BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0749A

Length=45
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15840163|ref|NP_335200.1|  hypothetical protein MT0773.1 [Myco...  93.6    8e-18
gi|296169394|ref|ZP_06851017.1|  conserved hypothetical protein [...  79.3    2e-13
gi|339632818|ref|YP_004724460.1|  hypothetical protein MAF_28120 ...  78.2    4e-13
gi|15842344|ref|NP_337381.1|  hypothetical protein MT2874 [Mycoba...  78.2    4e-13
gi|306798716|ref|ZP_07437018.1|  hypothetical protein TMFG_03703 ...  78.2    4e-13
gi|121638687|ref|YP_978911.1|  hypothetical protein BCG_2825 [Myc...  78.2    4e-13
gi|253798108|ref|YP_003031109.1|  hypothetical protein TBMG_01166...  78.2    4e-13
gi|15609944|ref|NP_217323.1|  hypothetical protein Rv2807 [Mycoba...  78.2    4e-13
gi|340627820|ref|YP_004746272.1|  hypothetical protein MCAN_28491...  76.3    2e-12
gi|7648576|gb|AAF65592.1|AF139916_13  hypothetical protein [Brevi...  72.0    3e-11
gi|338753668|gb|AEI96657.1|  integrase core domain-containing pro...  60.8    6e-08
gi|296454382|ref|YP_003661525.1|  integrase core domain-containin...  60.8    6e-08
gi|296454294|ref|YP_003661437.1|  integrase core domain-containin...  60.8    6e-08
gi|315656887|ref|ZP_07909774.1|  integrase domain protein [Mobilu...  60.8    7e-08
gi|298346652|ref|YP_003719339.1|  transposase [Mobiluncus curtisi...  60.5    7e-08
gi|304389639|ref|ZP_07371601.1|  integrase domain protein [Mobilu...  60.5    7e-08
gi|338755106|gb|AEI98095.1|  integrase core domain-containing pro...  60.5    9e-08
gi|260907374|ref|ZP_05915696.1|  Integrase catalytic region [Brev...  59.3    2e-07
gi|7477503|pir||C70990  hypothetical protein Rv3128c - Mycobacter...  58.5    3e-07
gi|32455734|ref|NP_862568.1|  hypothetical protein pCLPp01 [Mycob...  58.5    3e-07
gi|260905151|ref|ZP_05913473.1|  Integrase catalytic region [Brev...  57.8    5e-07
gi|291516953|emb|CBK70569.1|  Integrase core domain [Bifidobacter...  57.8    6e-07
gi|260906449|ref|ZP_05914771.1|  Integrase catalytic region [Brev...  56.2    2e-06
gi|258651135|ref|YP_003200291.1|  Integrase catalytic subunit [Na...  55.1    4e-06
gi|258652108|ref|YP_003201264.1|  Integrase catalytic subunit [Na...  55.1    4e-06
gi|296169348|ref|ZP_06850973.1|  integrase domain protein [Mycoba...  52.4    2e-05
gi|325963578|ref|YP_004241484.1|  integrase family protein [Arthr...  45.8    0.002
gi|260905080|ref|ZP_05913402.1|  hypothetical protein BlinB_07094...  45.1    0.004
gi|260907002|ref|ZP_05915324.1|  Integrase catalytic region [Brev...  42.4    0.022
gi|120403405|ref|YP_953234.1|  integrase catalytic subunit [Mycob...  42.0    0.031
gi|307299555|ref|ZP_07579354.1|  Integrase catalytic region [Ther...  40.0    0.13 
gi|254820517|ref|ZP_05225518.1|  integrase catalytic subunit [Myc...  39.7    0.14 
gi|260904862|ref|ZP_05913184.1|  Integrase catalytic region [Brev...  37.7    0.57 
gi|333990799|ref|YP_004523413.1|  integrase catalytic subunit [My...  36.6    1.1  
gi|333991761|ref|YP_004524375.1|  integrase catalytic subunit [My...  36.6    1.2  
gi|332296340|ref|YP_004438263.1|  Integrase catalytic region [The...  36.6    1.4  
gi|332295603|ref|YP_004437526.1|  Integrase catalytic region [The...  36.2    1.7  
gi|31794303|ref|NP_856796.1|  hypothetical protein Mb3151c [Mycob...  35.8    1.9  
gi|89894052|ref|YP_517539.1|  hypothetical protein DSY1306 [Desul...  35.8    2.1  
gi|239617520|ref|YP_002940842.1|  Integrase catalytic region [Kos...  35.4    2.7  
gi|339626993|ref|YP_004718636.1|  integrase catalytic subunit [Su...  35.4    3.0  
gi|339628622|ref|YP_004720265.1|  hypothetical protein TPY_2362 [...  35.4    3.1  
gi|239618188|ref|YP_002941510.1|  Integrase catalytic region [Kos...  35.0    3.6  
gi|239617798|ref|YP_002941120.1|  Integrase catalytic region [Kos...  35.0    3.6  
gi|239616742|ref|YP_002940064.1|  Integrase catalytic region [Kos...  35.0    3.7  
gi|239616771|ref|YP_002940093.1|  Integrase catalytic region [Kos...  35.0    3.9  
gi|317121722|ref|YP_004101725.1|  Integrase catalytic region [The...  34.3    5.9  
gi|313902057|ref|ZP_07835470.1|  Integrase catalytic region [Ther...  34.3    6.2  
gi|313902786|ref|ZP_07836183.1|  Integrase catalytic region [Ther...  34.3    6.5  
gi|313902437|ref|ZP_07835839.1|  Integrase catalytic region [Ther...  33.9    8.0  


>gi|15840163|ref|NP_335200.1| hypothetical protein MT0773.1 [Mycobacterium tuberculosis CDC1551]
 gi|31791936|ref|NP_854429.1| hypothetical protein Mb0771c [Mycobacterium bovis AF2122/97]
 gi|57116775|ref|YP_177632.1| hypothetical protein Rv0749A [Mycobacterium tuberculosis H37Rv]
 29 more sequence titles
 Length=45

 Score = 93.6 bits (231),  Expect = 8e-18, Method: Compositional matrix adjust.
 Identities = 44/45 (98%), Positives = 45/45 (100%), Gaps = 0/45 (0%)

Query  1   VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALGFRP  45
           +VRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALGFRP
Sbjct  1   MVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALGFRP  45


>gi|296169394|ref|ZP_06851017.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295895944|gb|EFG75636.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=242

 Score = 79.3 bits (194),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 34/43 (80%), Positives = 41/43 (96%), Gaps = 0/43 (0%)

Query  1    VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALGF  43
            VVRKHAF+WRYD++EELELLN+LW+LVSLR NFFTPTKK +G+
Sbjct  108  VVRKHAFYWRYDTSEELELLNRLWKLVSLRCNFFTPTKKPIGY  150


>gi|339632818|ref|YP_004724460.1| hypothetical protein MAF_28120 [Mycobacterium africanum GM041182]
 gi|339332174|emb|CCC27882.1| conserved hypothetical protein [Mycobacterium africanum GM041182]
Length=384

 Score = 78.2 bits (191),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 34/43 (80%), Positives = 39/43 (91%), Gaps = 0/43 (0%)

Query  1    VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALGF  43
            VVRKHAF+WRYD+ EELELLN+LW LVSLR NFFTPTKK +G+
Sbjct  250  VVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGY  292


>gi|15842344|ref|NP_337381.1| hypothetical protein MT2874 [Mycobacterium tuberculosis CDC1551]
 gi|31793983|ref|NP_856476.1| hypothetical protein Mb2830 [Mycobacterium bovis AF2122/97]
 gi|148823996|ref|YP_001288750.1| hypothetical protein TBFG_12821 [Mycobacterium tuberculosis F11]
 51 more sequence titles
 Length=384

 Score = 78.2 bits (191),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 34/43 (80%), Positives = 39/43 (91%), Gaps = 0/43 (0%)

Query  1    VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALGF  43
            VVRKHAF+WRYD+ EELELLN+LW LVSLR NFFTPTKK +G+
Sbjct  250  VVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGY  292


>gi|306798716|ref|ZP_07437018.1| hypothetical protein TMFG_03703 [Mycobacterium tuberculosis SUMu006]
 gi|308341096|gb|EFP29947.1| hypothetical protein TMFG_03703 [Mycobacterium tuberculosis SUMu006]
Length=384

 Score = 78.2 bits (191),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 34/43 (80%), Positives = 39/43 (91%), Gaps = 0/43 (0%)

Query  1    VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALGF  43
            VVRKHAF+WRYD+ EELELLN+LW LVSLR NFFTPTKK +G+
Sbjct  250  VVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGY  292


>gi|121638687|ref|YP_978911.1| hypothetical protein BCG_2825 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|224991179|ref|YP_002645868.1| hypothetical protein JTY_2819 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|121494335|emb|CAL72813.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|224774294|dbj|BAH27100.1| hypothetical protein JTY_2819 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|341602725|emb|CCC65401.1| conserved hypothetical protein [Mycobacterium bovis BCG str. 
Moreau RDJ]
Length=384

 Score = 78.2 bits (191),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 34/43 (80%), Positives = 39/43 (91%), Gaps = 0/43 (0%)

Query  1    VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALGF  43
            VVRKHAF+WRYD+ EELELLN+LW LVSLR NFFTPTKK +G+
Sbjct  250  VVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGY  292


>gi|253798108|ref|YP_003031109.1| hypothetical protein TBMG_01166 [Mycobacterium tuberculosis KZN 
1435]
 gi|289553405|ref|ZP_06442615.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
 gi|253319611|gb|ACT24214.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
1435]
 gi|289438037|gb|EFD20530.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
 gi|328457881|gb|AEB03304.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
4207]
 gi|339295655|gb|AEJ47766.1| hypothetical protein CCDC5079_2576 [Mycobacterium tuberculosis 
CCDC5079]
Length=383

 Score = 78.2 bits (191),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 34/43 (80%), Positives = 39/43 (91%), Gaps = 0/43 (0%)

Query  1    VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALGF  43
            VVRKHAF+WRYD+ EELELLN+LW LVSLR NFFTPTKK +G+
Sbjct  249  VVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGY  291


>gi|15609944|ref|NP_217323.1| hypothetical protein Rv2807 [Mycobacterium tuberculosis H37Rv]
 gi|148662649|ref|YP_001284172.1| hypothetical protein MRA_2831 [Mycobacterium tuberculosis H37Ra]
 gi|167967620|ref|ZP_02549897.1| hypothetical protein MtubH3_06126 [Mycobacterium tuberculosis 
H37Ra]
 10 more sequence titles
 Length=384

 Score = 78.2 bits (191),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 34/43 (80%), Positives = 39/43 (91%), Gaps = 0/43 (0%)

Query  1    VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALGF  43
            VVRKHAF+WRYD+ EELELLN+LW LVSLR NFFTPTKK +G+
Sbjct  250  VVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGY  292


>gi|340627820|ref|YP_004746272.1| hypothetical protein MCAN_28491 [Mycobacterium canettii CIPT 
140010059]
 gi|340006010|emb|CCC45180.1| putative uncharacterized protein bcg_2825 [Mycobacterium canettii 
CIPT 140010059]
Length=384

 Score = 76.3 bits (186),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 33/43 (77%), Positives = 40/43 (94%), Gaps = 0/43 (0%)

Query  1    VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALGF  43
            VVRKHAF+WRYD+ +E ELLN+LW+LVSLRLNFFTPTKK +G+
Sbjct  250  VVRKHAFYWRYDTEQERELLNRLWRLVSLRLNFFTPTKKPVGY  292


>gi|7648576|gb|AAF65592.1|AF139916_13 hypothetical protein [Brevibacterium linens]
Length=418

 Score = 72.0 bits (175),  Expect = 3e-11, Method: Compositional matrix adjust.
 Identities = 32/43 (75%), Positives = 37/43 (87%), Gaps = 0/43 (0%)

Query  1    VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALGF  43
            VVRKHAF+WRYD++EEL LL QLW LVSLRLNFF PTKK + +
Sbjct  285  VVRKHAFYWRYDTSEELGLLGQLWPLVSLRLNFFVPTKKPVEY  327


>gi|338753668|gb|AEI96657.1| integrase core domain-containing protein [Bifidobacterium longum 
subsp. longum KACC 91563]
Length=438

 Score = 60.8 bits (146),  Expect = 6e-08, Method: Composition-based stats.
 Identities = 27/42 (65%), Positives = 37/42 (89%), Gaps = 1/42 (2%)

Query  1    VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALG  42
            VVRKHAF++RY+   EL+LLN+LWQLVS+++N FTP+KK +G
Sbjct  283  VVRKHAFYYRYE-LAELDLLNELWQLVSVKVNLFTPSKKPVG  323


>gi|296454382|ref|YP_003661525.1| integrase core domain-containing protein [Bifidobacterium longum 
subsp. longum JDM301]
 gi|296183813|gb|ADH00695.1| Integrase core domain protein [Bifidobacterium longum subsp. 
longum JDM301]
Length=432

 Score = 60.8 bits (146),  Expect = 6e-08, Method: Composition-based stats.
 Identities = 27/42 (65%), Positives = 37/42 (89%), Gaps = 1/42 (2%)

Query  1    VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALG  42
            VVRKHAF++RY+   EL+LLN+LWQLVS+++N FTP+KK +G
Sbjct  277  VVRKHAFYYRYE-LAELDLLNELWQLVSVKVNLFTPSKKPVG  317


>gi|296454294|ref|YP_003661437.1| integrase core domain-containing protein [Bifidobacterium longum 
subsp. longum JDM301]
 gi|296183725|gb|ADH00607.1| Integrase core domain protein [Bifidobacterium longum subsp. 
longum JDM301]
Length=432

 Score = 60.8 bits (146),  Expect = 6e-08, Method: Composition-based stats.
 Identities = 27/42 (65%), Positives = 37/42 (89%), Gaps = 1/42 (2%)

Query  1    VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALG  42
            VVRKHAF++RY+   EL+LLN+LWQLVS+++N FTP+KK +G
Sbjct  277  VVRKHAFYYRYE-LAELDLLNELWQLVSVKVNLFTPSKKPVG  317


>gi|315656887|ref|ZP_07909774.1| integrase domain protein [Mobiluncus curtisii subsp. holmesii 
ATCC 35242]
 gi|315492842|gb|EFU82446.1| integrase domain protein [Mobiluncus curtisii subsp. holmesii 
ATCC 35242]
Length=310

 Score = 60.8 bits (146),  Expect = 7e-08, Method: Compositional matrix adjust.
 Identities = 24/42 (58%), Positives = 35/42 (84%), Gaps = 0/42 (0%)

Query  1    VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALG  42
            VVRK+ FH+RYD+ +EL++L +LW+ V LR+N FTPT+K +G
Sbjct  174  VVRKYGFHYRYDTPKELKVLRKLWKTVCLRMNLFTPTRKPIG  215


>gi|298346652|ref|YP_003719339.1| transposase [Mobiluncus curtisii ATCC 43063]
 gi|298236713|gb|ADI67845.1| transposase [Mobiluncus curtisii ATCC 43063]
Length=310

 Score = 60.5 bits (145),  Expect = 7e-08, Method: Compositional matrix adjust.
 Identities = 24/42 (58%), Positives = 35/42 (84%), Gaps = 0/42 (0%)

Query  1    VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALG  42
            VVRK+ FH+RYD+ +EL++L +LW+ V LR+N FTPT+K +G
Sbjct  174  VVRKYGFHYRYDTPKELKVLRKLWKTVCLRMNLFTPTRKPIG  215


>gi|304389639|ref|ZP_07371601.1| integrase domain protein [Mobiluncus curtisii subsp. curtisii 
ATCC 35241]
 gi|304327192|gb|EFL94428.1| integrase domain protein [Mobiluncus curtisii subsp. curtisii 
ATCC 35241]
Length=293

 Score = 60.5 bits (145),  Expect = 7e-08, Method: Compositional matrix adjust.
 Identities = 24/42 (58%), Positives = 35/42 (84%), Gaps = 0/42 (0%)

Query  1    VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALG  42
            VVRK+ FH+RYD+ +EL++L +LW+ V LR+N FTPT+K +G
Sbjct  157  VVRKYGFHYRYDTPKELKVLRKLWKTVCLRMNLFTPTRKPIG  198


>gi|338755106|gb|AEI98095.1| integrase core domain-containing protein [Bifidobacterium longum 
subsp. longum KACC 91563]
 gi|338755216|gb|AEI98205.1| integrase core domain-containing protein [Bifidobacterium longum 
subsp. longum KACC 91563]
Length=377

 Score = 60.5 bits (145),  Expect = 9e-08, Method: Composition-based stats.
 Identities = 27/42 (65%), Positives = 37/42 (89%), Gaps = 1/42 (2%)

Query  1    VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALG  42
            VVRKHAF++RY+   EL+LLN+LWQLVS+++N FTP+KK +G
Sbjct  222  VVRKHAFYYRYE-LAELDLLNELWQLVSVKVNLFTPSKKPVG  262


>gi|260907374|ref|ZP_05915696.1| Integrase catalytic region [Brevibacterium linens BL2]
Length=430

 Score = 59.3 bits (142),  Expect = 2e-07, Method: Composition-based stats.
 Identities = 24/43 (56%), Positives = 34/43 (80%), Gaps = 0/43 (0%)

Query  1    VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALGF  43
            +VR++ F++RYD+T EL L+  LW LV+ RLN+FTPTKK  G+
Sbjct  294  LVRRYGFYYRYDTTTELGLMTTLWALVNDRLNYFTPTKKPTGY  336


>gi|7477503|pir||C70990 hypothetical protein Rv3128c - Mycobacterium tuberculosis  (strain 
H37RV)
Length=337

 Score = 58.5 bits (140),  Expect = 3e-07, Method: Composition-based stats.
 Identities = 23/43 (54%), Positives = 36/43 (84%), Gaps = 0/43 (0%)

Query  1    VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALGF  43
            +VRK+AF++RYD+ EE  +LN++W+LV+ RLN+ TPT K +G+
Sbjct  204  LVRKYAFYYRYDTAEERAVLNRMWKLVNDRLNYLTPTIKPIGY  246


>gi|32455734|ref|NP_862568.1| hypothetical protein pCLPp01 [Mycobacterium celatum]
 gi|13810877|gb|AAK40065.1| Rv3128c-like protein [Mycobacterium celatum]
Length=423

 Score = 58.5 bits (140),  Expect = 3e-07, Method: Composition-based stats.
 Identities = 24/43 (56%), Positives = 36/43 (84%), Gaps = 0/43 (0%)

Query  1    VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALGF  43
            +VRK+AF++RYD+ EE  +LN+LW+LV+ RLN+ TPT K +G+
Sbjct  290  LVRKYAFYYRYDTDEERAVLNRLWKLVNDRLNYLTPTIKPIGY  332


>gi|260905151|ref|ZP_05913473.1| Integrase catalytic region [Brevibacterium linens BL2]
Length=218

 Score = 57.8 bits (138),  Expect = 5e-07, Method: Composition-based stats.
 Identities = 24/43 (56%), Positives = 34/43 (80%), Gaps = 0/43 (0%)

Query  1    VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALGF  43
            +VR++ F++RYD+T EL L+  LW LV+ RLN+FTPTKK  G+
Sbjct  82   LVRRYGFYYRYDTTTELGLMTTLWALVNDRLNYFTPTKKPTGY  124


>gi|291516953|emb|CBK70569.1| Integrase core domain [Bifidobacterium longum subsp. longum F8]
Length=436

 Score = 57.8 bits (138),  Expect = 6e-07, Method: Composition-based stats.
 Identities = 24/42 (58%), Positives = 35/42 (84%), Gaps = 1/42 (2%)

Query  1    VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALG  42
            +VR+HAFH+RY + +EL LLN+LW+LV ++ N FTP+KK +G
Sbjct  281  IVRRHAFHYRY-TVDELGLLNELWELVRIKANLFTPSKKPVG  321


>gi|260906449|ref|ZP_05914771.1| Integrase catalytic region [Brevibacterium linens BL2]
Length=136

 Score = 56.2 bits (134),  Expect = 2e-06, Method: Composition-based stats.
 Identities = 23/42 (55%), Positives = 33/42 (79%), Gaps = 0/42 (0%)

Query  2   VRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALGF  43
           +R++ F++RYD+T EL L+  LW LV+ RLN+FTPTKK  G+
Sbjct  1   MRRYGFYYRYDTTTELGLMTTLWALVNDRLNYFTPTKKPTGY  42


>gi|258651135|ref|YP_003200291.1| Integrase catalytic subunit [Nakamurella multipartita DSM 44233]
 gi|258554360|gb|ACV77302.1| Integrase catalytic region [Nakamurella multipartita DSM 44233]
Length=418

 Score = 55.1 bits (131),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 23/42 (55%), Positives = 34/42 (81%), Gaps = 0/42 (0%)

Query  1    VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALG  42
            +VR++AF++RYD+ EE   LN+LW+LV+ RLN+ TPT K +G
Sbjct  285  LVRRYAFYYRYDTDEERHALNRLWKLVNDRLNYLTPTIKPVG  326


>gi|258652108|ref|YP_003201264.1| Integrase catalytic subunit [Nakamurella multipartita DSM 44233]
 gi|258555333|gb|ACV78275.1| Integrase catalytic region [Nakamurella multipartita DSM 44233]
Length=418

 Score = 55.1 bits (131),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 23/42 (55%), Positives = 34/42 (81%), Gaps = 0/42 (0%)

Query  1    VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALG  42
            +VR++AF++RYD+ EE   LN+LW+LV+ RLN+ TPT K +G
Sbjct  285  LVRRYAFYYRYDTDEERHALNRLWKLVNDRLNYLTPTIKPVG  326


>gi|296169348|ref|ZP_06850973.1| integrase domain protein [Mycobacterium parascrofulaceum ATCC 
BAA-614]
 gi|295895970|gb|EFG75660.1| integrase domain protein [Mycobacterium parascrofulaceum ATCC 
BAA-614]
Length=210

 Score = 52.4 bits (124),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 22/39 (57%), Positives = 32/39 (83%), Gaps = 0/39 (0%)

Query  1    VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKK  39
            +VRK+ F++RYD+ EE  +LN+LW+LV+ RLN+ TPT K
Sbjct  171  LVRKYGFYYRYDTDEERAVLNRLWRLVNDRLNYLTPTIK  209


>gi|325963578|ref|YP_004241484.1| integrase family protein [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469665|gb|ADX73350.1| integrase family protein [Arthrobacter phenanthrenivorans Sphe3]
Length=318

 Score = 45.8 bits (107),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 21/35 (60%), Positives = 24/35 (69%), Gaps = 0/35 (0%)

Query  2    VRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTP  36
            VRKHAF +RY+S  EL LLN+LW LV  R N   P
Sbjct  284  VRKHAFRYRYESAAELTLLNELWDLVMARKNHLLP  318


>gi|260905080|ref|ZP_05913402.1| hypothetical protein BlinB_07094 [Brevibacterium linens BL2]
Length=205

 Score = 45.1 bits (105),  Expect = 0.004, Method: Composition-based stats.
 Identities = 19/43 (45%), Positives = 29/43 (68%), Gaps = 0/43 (0%)

Query  1    VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALGF  43
            VVR++ F++RYD+  E   LN+LW L + R+N+  PT K  G+
Sbjct  72   VVRRYGFYYRYDTDLERRALNRLWHLDNDRVNYLMPTIKPTGY  114


>gi|260907002|ref|ZP_05915324.1| Integrase catalytic region [Brevibacterium linens BL2]
Length=389

 Score = 42.4 bits (98),  Expect = 0.022, Method: Compositional matrix adjust.
 Identities = 19/43 (45%), Positives = 28/43 (66%), Gaps = 0/43 (0%)

Query  1    VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALGF  43
            +V ++ F  RYD+ E    LN LW+ V+ RLNFFTP +K + +
Sbjct  280  LVHEYGFVERYDTEEARSALNHLWRAVNDRLNFFTPIRKPVAW  322


>gi|120403405|ref|YP_953234.1| integrase catalytic subunit [Mycobacterium vanbaalenii PYR-1]
 gi|119956223|gb|ABM13228.1| Integrase, catalytic region [Mycobacterium vanbaalenii PYR-1]
Length=410

 Score = 42.0 bits (97),  Expect = 0.031, Method: Composition-based stats.
 Identities = 18/41 (44%), Positives = 28/41 (69%), Gaps = 0/41 (0%)

Query  1    VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKAL  41
            VVR    ++RYD+  EL LLN++W+L S+  N+F P +K +
Sbjct  277  VVRTVVSYYRYDTAPELLLLNEIWKLQSMLTNYFHPQQKLI  317


>gi|307299555|ref|ZP_07579354.1| Integrase catalytic region [Thermotogales bacterium MesG1.Ag.4.2]
 gi|306914790|gb|EFN45178.1| Integrase catalytic region [Thermotogales bacterium MesG1.Ag.4.2]
Length=228

 Score = 40.0 bits (92),  Expect = 0.13, Method: Composition-based stats.
 Identities = 17/41 (42%), Positives = 30/41 (74%), Gaps = 0/41 (0%)

Query  1    VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKAL  41
            +VR+   ++RYD+ EEL +LN+L++ ++L  N F PT+K +
Sbjct  103  LVRRAVGYYRYDTLEELSILNELYESLNLYNNHFQPTQKMI  143


>gi|254820517|ref|ZP_05225518.1| integrase catalytic subunit [Mycobacterium intracellulare ATCC 
13950]
Length=417

 Score = 39.7 bits (91),  Expect = 0.14, Method: Composition-based stats.
 Identities = 19/41 (47%), Positives = 26/41 (64%), Gaps = 0/41 (0%)

Query  1    VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKAL  41
            VVR    + RYD+  EL LLN++WQL S   N+F P +K +
Sbjct  284  VVRTVVGYHRYDTAAELLLLNEIWQLQSKLTNYFYPQQKLI  324


>gi|260904862|ref|ZP_05913184.1| Integrase catalytic region [Brevibacterium linens BL2]
Length=323

 Score = 37.7 bits (86),  Expect = 0.57, Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 22/28 (79%), Gaps = 0/28 (0%)

Query  1    VVRKHAFHWRYDSTEELELLNQLWQLVS  28
            +VR++ F++RYD+T EL L+  LW LV+
Sbjct  294  LVRRYGFYYRYDTTTELGLMTTLWALVN  321


>gi|333990799|ref|YP_004523413.1| integrase catalytic subunit [Mycobacterium sp. JDM601]
 gi|333486767|gb|AEF36159.1| integrase catalytic subunit [Mycobacterium sp. JDM601]
Length=410

 Score = 36.6 bits (83),  Expect = 1.1, Method: Compositional matrix adjust.
 Identities = 17/39 (44%), Positives = 24/39 (62%), Gaps = 0/39 (0%)

Query  1    VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKK  39
            VVR    + RYD+  E+ LLN++W L S   N+F P +K
Sbjct  277  VVRSMVGYHRYDTAAEVLLLNEIWHLQSKLTNYFYPQQK  315


>gi|333991761|ref|YP_004524375.1| integrase catalytic subunit [Mycobacterium sp. JDM601]
 gi|333487729|gb|AEF37121.1| integrase catalytic subunit [Mycobacterium sp. JDM601]
Length=410

 Score = 36.6 bits (83),  Expect = 1.2, Method: Compositional matrix adjust.
 Identities = 17/39 (44%), Positives = 24/39 (62%), Gaps = 0/39 (0%)

Query  1    VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKK  39
            VVR    + RYD+  E+ LLN++W L S   N+F P +K
Sbjct  277  VVRSMVGYHRYDTAAEVLLLNEIWHLQSKLTNYFYPQQK  315


>gi|332296340|ref|YP_004438263.1| Integrase catalytic region [Thermodesulfobium narugense DSM 14796]
 gi|332179443|gb|AEE15132.1| Integrase catalytic region [Thermodesulfobium narugense DSM 14796]
Length=417

 Score = 36.6 bits (83),  Expect = 1.4, Method: Composition-based stats.
 Identities = 17/41 (42%), Positives = 26/41 (64%), Gaps = 0/41 (0%)

Query  1    VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKAL  41
            VVRK+  ++RYD   EL  L +L++ + L +NFF P  K +
Sbjct  288  VVRKYVGYFRYDREVELITLKRLYESLRLYINFFQPVMKQI  328


>gi|332295603|ref|YP_004437526.1| Integrase catalytic region [Thermodesulfobium narugense DSM 14796]
 gi|332178706|gb|AEE14395.1| Integrase catalytic region [Thermodesulfobium narugense DSM 14796]
Length=417

 Score = 36.2 bits (82),  Expect = 1.7, Method: Composition-based stats.
 Identities = 17/41 (42%), Positives = 26/41 (64%), Gaps = 0/41 (0%)

Query  1    VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKAL  41
            VVRK+  ++RYD   EL  L +L++ + L +NFF P  K +
Sbjct  288  VVRKYVGYFRYDREVELITLKRLYESLRLYINFFQPIMKQI  328


>gi|31794303|ref|NP_856796.1| hypothetical protein Mb3151c [Mycobacterium bovis AF2122/97]
 gi|121639010|ref|YP_979234.1| hypothetical protein BCG_3150c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|148824321|ref|YP_001289075.1| hypothetical protein TBFG_13148 [Mycobacterium tuberculosis F11]
 31 more sequence titles
 Length=116

 Score = 35.8 bits (81),  Expect = 1.9, Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 21/25 (84%), Gaps = 0/25 (0%)

Query  19  LLNQLWQLVSLRLNFFTPTKKALGF  43
           +LN++W+LV+ RLN+ TPT K +G+
Sbjct  1   MLNRMWKLVNDRLNYLTPTIKPIGY  25


>gi|89894052|ref|YP_517539.1| hypothetical protein DSY1306 [Desulfitobacterium hafniense Y51]
 gi|89333500|dbj|BAE83095.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length=390

 Score = 35.8 bits (81),  Expect = 2.1, Method: Composition-based stats.
 Identities = 16/41 (40%), Positives = 25/41 (61%), Gaps = 0/41 (0%)

Query  1    VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKAL  41
            +VR+H  + RY+    L LLNQ + L+   +NFF P+ K +
Sbjct  284  LVRRHIGYGRYEGQAALALLNQYYGLLRRYVNFFQPSTKLI  324


>gi|239617520|ref|YP_002940842.1| Integrase catalytic region [Kosmotoga olearia TBF 19.5.1]
 gi|239618041|ref|YP_002941363.1| Integrase catalytic region [Kosmotoga olearia TBF 19.5.1]
 gi|239618189|ref|YP_002941511.1| Integrase catalytic region [Kosmotoga olearia TBF 19.5.1]
 gi|239506351|gb|ACR79838.1| Integrase catalytic region [Kosmotoga olearia TBF 19.5.1]
 gi|239506872|gb|ACR80359.1| Integrase catalytic region [Kosmotoga olearia TBF 19.5.1]
 gi|239507020|gb|ACR80507.1| Integrase catalytic region [Kosmotoga olearia TBF 19.5.1]
Length=394

 Score = 35.4 bits (80),  Expect = 2.7, Method: Compositional matrix adjust.
 Identities = 15/41 (37%), Positives = 27/41 (66%), Gaps = 0/41 (0%)

Query  1    VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKAL  41
            VVR+   ++RYD+ EE ++L +L+  ++L  N F P +K +
Sbjct  273  VVRRAVGYYRYDTEEEFQILKELYASLNLYNNHFQPNQKIV  313


>gi|339626993|ref|YP_004718636.1| integrase catalytic subunit [Sulfobacillus acidophilus TPY]
 gi|339284782|gb|AEJ38893.1| integrase catalytic subunit [Sulfobacillus acidophilus TPY]
Length=389

 Score = 35.4 bits (80),  Expect = 3.0, Method: Compositional matrix adjust.
 Identities = 16/42 (39%), Positives = 26/42 (62%), Gaps = 0/42 (0%)

Query  1    VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALG  42
            VVR+   + RY+  E+++ LN L+  + L  NFF P +KA+ 
Sbjct  273  VVRRFVGYLRYEGAEQVQWLNDLYATLRLYTNFFQPLQKAVA  314


>gi|339628622|ref|YP_004720265.1| hypothetical protein TPY_2362 [Sulfobacillus acidophilus TPY]
 gi|339286411|gb|AEJ40522.1| hypothetical protein TPY_2362 [Sulfobacillus acidophilus TPY]
Length=281

 Score = 35.4 bits (80),  Expect = 3.1, Method: Compositional matrix adjust.
 Identities = 16/42 (39%), Positives = 26/42 (62%), Gaps = 0/42 (0%)

Query  1    VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALG  42
            VVR+   + RY+  E+++ LN L+  + L  NFF P +KA+ 
Sbjct  165  VVRRFVGYLRYEGAEQVQWLNDLYATLRLYANFFQPLQKAVA  206


>gi|239618188|ref|YP_002941510.1| Integrase catalytic region [Kosmotoga olearia TBF 19.5.1]
 gi|239507019|gb|ACR80506.1| Integrase catalytic region [Kosmotoga olearia TBF 19.5.1]
Length=394

 Score = 35.0 bits (79),  Expect = 3.6, Method: Composition-based stats.
 Identities = 15/41 (37%), Positives = 27/41 (66%), Gaps = 0/41 (0%)

Query  1    VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKAL  41
            VVR+   ++RYD+ EE ++L +L+  ++L  N F P +K +
Sbjct  273  VVRRAVGYYRYDTEEEFQILKELYASLNLYNNHFQPNQKII  313


>gi|239617798|ref|YP_002941120.1| Integrase catalytic region [Kosmotoga olearia TBF 19.5.1]
 gi|239506629|gb|ACR80116.1| Integrase catalytic region [Kosmotoga olearia TBF 19.5.1]
Length=394

 Score = 35.0 bits (79),  Expect = 3.6, Method: Composition-based stats.
 Identities = 15/41 (37%), Positives = 27/41 (66%), Gaps = 0/41 (0%)

Query  1    VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKAL  41
            VVR+   ++RYD+ EE ++L +L+  ++L  N F P +K +
Sbjct  273  VVRRAVGYYRYDTEEEFQILKELYASLNLYNNHFQPNQKII  313


>gi|239616742|ref|YP_002940064.1| Integrase catalytic region [Kosmotoga olearia TBF 19.5.1]
 gi|239505573|gb|ACR79060.1| Integrase catalytic region [Kosmotoga olearia TBF 19.5.1]
Length=394

 Score = 35.0 bits (79),  Expect = 3.7, Method: Composition-based stats.
 Identities = 15/41 (37%), Positives = 27/41 (66%), Gaps = 0/41 (0%)

Query  1    VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKAL  41
            VVR+   ++RYD+ EE ++L +L+  ++L  N F P +K +
Sbjct  273  VVRRAVGYYRYDTEEEFQILKELYASLNLYNNHFQPNQKII  313


>gi|239616771|ref|YP_002940093.1| Integrase catalytic region [Kosmotoga olearia TBF 19.5.1]
 gi|239505602|gb|ACR79089.1| Integrase catalytic region [Kosmotoga olearia TBF 19.5.1]
Length=394

 Score = 35.0 bits (79),  Expect = 3.9, Method: Composition-based stats.
 Identities = 15/39 (39%), Positives = 26/39 (67%), Gaps = 0/39 (0%)

Query  1    VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKK  39
            VVR+   ++RYD+ EE ++L +L+  ++L  N F P +K
Sbjct  273  VVRRAVGYYRYDTEEEFQILKELYASLNLYNNHFQPNQK  311


>gi|317121722|ref|YP_004101725.1| Integrase catalytic region [Thermaerobacter marianensis DSM 12885]
 gi|317122764|ref|YP_004102767.1| Integrase catalytic region [Thermaerobacter marianensis DSM 12885]
 gi|317123176|ref|YP_004103179.1| Integrase catalytic region [Thermaerobacter marianensis DSM 12885]
 gi|315591702|gb|ADU50998.1| Integrase catalytic region [Thermaerobacter marianensis DSM 12885]
 gi|315592744|gb|ADU52040.1| Integrase catalytic region [Thermaerobacter marianensis DSM 12885]
 gi|315593156|gb|ADU52452.1| Integrase catalytic region [Thermaerobacter marianensis DSM 12885]
Length=384

 Score = 34.3 bits (77),  Expect = 5.9, Method: Compositional matrix adjust.
 Identities = 16/39 (42%), Positives = 25/39 (65%), Gaps = 0/39 (0%)

Query  1    VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKK  39
            +VR+   + RYD  E++E LN+L+  + L  N F PT+K
Sbjct  273  LVREIVGYARYDRPEQVEQLNRLYARLDLYANLFLPTRK  311


>gi|313902057|ref|ZP_07835470.1| Integrase catalytic region [Thermaerobacter subterraneus DSM 
13965]
 gi|313902844|ref|ZP_07836241.1| Integrase catalytic region [Thermaerobacter subterraneus DSM 
13965]
 gi|313903723|ref|ZP_07837112.1| Integrase catalytic region [Thermaerobacter subterraneus DSM 
13965]
 gi|313465911|gb|EFR61436.1| Integrase catalytic region [Thermaerobacter subterraneus DSM 
13965]
 gi|313466964|gb|EFR62481.1| Integrase catalytic region [Thermaerobacter subterraneus DSM 
13965]
 gi|313467666|gb|EFR63167.1| Integrase catalytic region [Thermaerobacter subterraneus DSM 
13965]
Length=384

 Score = 34.3 bits (77),  Expect = 6.2, Method: Compositional matrix adjust.
 Identities = 16/39 (42%), Positives = 25/39 (65%), Gaps = 0/39 (0%)

Query  1    VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKK  39
            +VR+   + RYD  E++E LN+L+  + L  N F PT+K
Sbjct  273  LVREIVGYARYDRPEQVEQLNRLYARLDLYANLFLPTRK  311


>gi|313902786|ref|ZP_07836183.1| Integrase catalytic region [Thermaerobacter subterraneus DSM 
13965]
 gi|313903582|ref|ZP_07836972.1| Integrase catalytic region [Thermaerobacter subterraneus DSM 
13965]
 gi|313466135|gb|EFR61659.1| Integrase catalytic region [Thermaerobacter subterraneus DSM 
13965]
 gi|313466906|gb|EFR62423.1| Integrase catalytic region [Thermaerobacter subterraneus DSM 
13965]
Length=384

 Score = 34.3 bits (77),  Expect = 6.5, Method: Compositional matrix adjust.
 Identities = 16/39 (42%), Positives = 25/39 (65%), Gaps = 0/39 (0%)

Query  1    VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKK  39
            +VR+   + RYD  E++E LN+L+  + L  N F PT+K
Sbjct  273  LVREIVGYARYDRPEQVEQLNRLYARLDLYANLFLPTRK  311


>gi|313902437|ref|ZP_07835839.1| Integrase catalytic region [Thermaerobacter subterraneus DSM 
13965]
 gi|313467235|gb|EFR62747.1| Integrase catalytic region [Thermaerobacter subterraneus DSM 
13965]
Length=150

 Score = 33.9 bits (76),  Expect = 8.0, Method: Compositional matrix adjust.
 Identities = 16/39 (42%), Positives = 25/39 (65%), Gaps = 0/39 (0%)

Query  1   VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKK  39
           +VR+   + RYD  E++E LN+L+  + L  N F PT+K
Sbjct  39  LVREIVGYARYDRPEQVEQLNRLYARLDLYANLFLPTRK  77



Lambda     K      H
   0.327    0.139    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128192280996




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40