BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0749A
Length=45
Score E
Sequences producing significant alignments: (Bits) Value
gi|15840163|ref|NP_335200.1| hypothetical protein MT0773.1 [Myco... 93.6 8e-18
gi|296169394|ref|ZP_06851017.1| conserved hypothetical protein [... 79.3 2e-13
gi|339632818|ref|YP_004724460.1| hypothetical protein MAF_28120 ... 78.2 4e-13
gi|15842344|ref|NP_337381.1| hypothetical protein MT2874 [Mycoba... 78.2 4e-13
gi|306798716|ref|ZP_07437018.1| hypothetical protein TMFG_03703 ... 78.2 4e-13
gi|121638687|ref|YP_978911.1| hypothetical protein BCG_2825 [Myc... 78.2 4e-13
gi|253798108|ref|YP_003031109.1| hypothetical protein TBMG_01166... 78.2 4e-13
gi|15609944|ref|NP_217323.1| hypothetical protein Rv2807 [Mycoba... 78.2 4e-13
gi|340627820|ref|YP_004746272.1| hypothetical protein MCAN_28491... 76.3 2e-12
gi|7648576|gb|AAF65592.1|AF139916_13 hypothetical protein [Brevi... 72.0 3e-11
gi|338753668|gb|AEI96657.1| integrase core domain-containing pro... 60.8 6e-08
gi|296454382|ref|YP_003661525.1| integrase core domain-containin... 60.8 6e-08
gi|296454294|ref|YP_003661437.1| integrase core domain-containin... 60.8 6e-08
gi|315656887|ref|ZP_07909774.1| integrase domain protein [Mobilu... 60.8 7e-08
gi|298346652|ref|YP_003719339.1| transposase [Mobiluncus curtisi... 60.5 7e-08
gi|304389639|ref|ZP_07371601.1| integrase domain protein [Mobilu... 60.5 7e-08
gi|338755106|gb|AEI98095.1| integrase core domain-containing pro... 60.5 9e-08
gi|260907374|ref|ZP_05915696.1| Integrase catalytic region [Brev... 59.3 2e-07
gi|7477503|pir||C70990 hypothetical protein Rv3128c - Mycobacter... 58.5 3e-07
gi|32455734|ref|NP_862568.1| hypothetical protein pCLPp01 [Mycob... 58.5 3e-07
gi|260905151|ref|ZP_05913473.1| Integrase catalytic region [Brev... 57.8 5e-07
gi|291516953|emb|CBK70569.1| Integrase core domain [Bifidobacter... 57.8 6e-07
gi|260906449|ref|ZP_05914771.1| Integrase catalytic region [Brev... 56.2 2e-06
gi|258651135|ref|YP_003200291.1| Integrase catalytic subunit [Na... 55.1 4e-06
gi|258652108|ref|YP_003201264.1| Integrase catalytic subunit [Na... 55.1 4e-06
gi|296169348|ref|ZP_06850973.1| integrase domain protein [Mycoba... 52.4 2e-05
gi|325963578|ref|YP_004241484.1| integrase family protein [Arthr... 45.8 0.002
gi|260905080|ref|ZP_05913402.1| hypothetical protein BlinB_07094... 45.1 0.004
gi|260907002|ref|ZP_05915324.1| Integrase catalytic region [Brev... 42.4 0.022
gi|120403405|ref|YP_953234.1| integrase catalytic subunit [Mycob... 42.0 0.031
gi|307299555|ref|ZP_07579354.1| Integrase catalytic region [Ther... 40.0 0.13
gi|254820517|ref|ZP_05225518.1| integrase catalytic subunit [Myc... 39.7 0.14
gi|260904862|ref|ZP_05913184.1| Integrase catalytic region [Brev... 37.7 0.57
gi|333990799|ref|YP_004523413.1| integrase catalytic subunit [My... 36.6 1.1
gi|333991761|ref|YP_004524375.1| integrase catalytic subunit [My... 36.6 1.2
gi|332296340|ref|YP_004438263.1| Integrase catalytic region [The... 36.6 1.4
gi|332295603|ref|YP_004437526.1| Integrase catalytic region [The... 36.2 1.7
gi|31794303|ref|NP_856796.1| hypothetical protein Mb3151c [Mycob... 35.8 1.9
gi|89894052|ref|YP_517539.1| hypothetical protein DSY1306 [Desul... 35.8 2.1
gi|239617520|ref|YP_002940842.1| Integrase catalytic region [Kos... 35.4 2.7
gi|339626993|ref|YP_004718636.1| integrase catalytic subunit [Su... 35.4 3.0
gi|339628622|ref|YP_004720265.1| hypothetical protein TPY_2362 [... 35.4 3.1
gi|239618188|ref|YP_002941510.1| Integrase catalytic region [Kos... 35.0 3.6
gi|239617798|ref|YP_002941120.1| Integrase catalytic region [Kos... 35.0 3.6
gi|239616742|ref|YP_002940064.1| Integrase catalytic region [Kos... 35.0 3.7
gi|239616771|ref|YP_002940093.1| Integrase catalytic region [Kos... 35.0 3.9
gi|317121722|ref|YP_004101725.1| Integrase catalytic region [The... 34.3 5.9
gi|313902057|ref|ZP_07835470.1| Integrase catalytic region [Ther... 34.3 6.2
gi|313902786|ref|ZP_07836183.1| Integrase catalytic region [Ther... 34.3 6.5
gi|313902437|ref|ZP_07835839.1| Integrase catalytic region [Ther... 33.9 8.0
>gi|15840163|ref|NP_335200.1| hypothetical protein MT0773.1 [Mycobacterium tuberculosis CDC1551]
gi|31791936|ref|NP_854429.1| hypothetical protein Mb0771c [Mycobacterium bovis AF2122/97]
gi|57116775|ref|YP_177632.1| hypothetical protein Rv0749A [Mycobacterium tuberculosis H37Rv]
29 more sequence titles
Length=45
Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 44/45 (98%), Positives = 45/45 (100%), Gaps = 0/45 (0%)
Query 1 VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALGFRP 45
+VRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALGFRP
Sbjct 1 MVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALGFRP 45
>gi|296169394|ref|ZP_06851017.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295895944|gb|EFG75636.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=242
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/43 (80%), Positives = 41/43 (96%), Gaps = 0/43 (0%)
Query 1 VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALGF 43
VVRKHAF+WRYD++EELELLN+LW+LVSLR NFFTPTKK +G+
Sbjct 108 VVRKHAFYWRYDTSEELELLNRLWKLVSLRCNFFTPTKKPIGY 150
>gi|339632818|ref|YP_004724460.1| hypothetical protein MAF_28120 [Mycobacterium africanum GM041182]
gi|339332174|emb|CCC27882.1| conserved hypothetical protein [Mycobacterium africanum GM041182]
Length=384
Score = 78.2 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 34/43 (80%), Positives = 39/43 (91%), Gaps = 0/43 (0%)
Query 1 VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALGF 43
VVRKHAF+WRYD+ EELELLN+LW LVSLR NFFTPTKK +G+
Sbjct 250 VVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGY 292
>gi|15842344|ref|NP_337381.1| hypothetical protein MT2874 [Mycobacterium tuberculosis CDC1551]
gi|31793983|ref|NP_856476.1| hypothetical protein Mb2830 [Mycobacterium bovis AF2122/97]
gi|148823996|ref|YP_001288750.1| hypothetical protein TBFG_12821 [Mycobacterium tuberculosis F11]
51 more sequence titles
Length=384
Score = 78.2 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 34/43 (80%), Positives = 39/43 (91%), Gaps = 0/43 (0%)
Query 1 VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALGF 43
VVRKHAF+WRYD+ EELELLN+LW LVSLR NFFTPTKK +G+
Sbjct 250 VVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGY 292
>gi|306798716|ref|ZP_07437018.1| hypothetical protein TMFG_03703 [Mycobacterium tuberculosis SUMu006]
gi|308341096|gb|EFP29947.1| hypothetical protein TMFG_03703 [Mycobacterium tuberculosis SUMu006]
Length=384
Score = 78.2 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 34/43 (80%), Positives = 39/43 (91%), Gaps = 0/43 (0%)
Query 1 VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALGF 43
VVRKHAF+WRYD+ EELELLN+LW LVSLR NFFTPTKK +G+
Sbjct 250 VVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGY 292
>gi|121638687|ref|YP_978911.1| hypothetical protein BCG_2825 [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|224991179|ref|YP_002645868.1| hypothetical protein JTY_2819 [Mycobacterium bovis BCG str. Tokyo
172]
gi|121494335|emb|CAL72813.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224774294|dbj|BAH27100.1| hypothetical protein JTY_2819 [Mycobacterium bovis BCG str. Tokyo
172]
gi|341602725|emb|CCC65401.1| conserved hypothetical protein [Mycobacterium bovis BCG str.
Moreau RDJ]
Length=384
Score = 78.2 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 34/43 (80%), Positives = 39/43 (91%), Gaps = 0/43 (0%)
Query 1 VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALGF 43
VVRKHAF+WRYD+ EELELLN+LW LVSLR NFFTPTKK +G+
Sbjct 250 VVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGY 292
>gi|253798108|ref|YP_003031109.1| hypothetical protein TBMG_01166 [Mycobacterium tuberculosis KZN
1435]
gi|289553405|ref|ZP_06442615.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
605]
gi|253319611|gb|ACT24214.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
1435]
gi|289438037|gb|EFD20530.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
605]
gi|328457881|gb|AEB03304.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
4207]
gi|339295655|gb|AEJ47766.1| hypothetical protein CCDC5079_2576 [Mycobacterium tuberculosis
CCDC5079]
Length=383
Score = 78.2 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 34/43 (80%), Positives = 39/43 (91%), Gaps = 0/43 (0%)
Query 1 VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALGF 43
VVRKHAF+WRYD+ EELELLN+LW LVSLR NFFTPTKK +G+
Sbjct 249 VVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGY 291
>gi|15609944|ref|NP_217323.1| hypothetical protein Rv2807 [Mycobacterium tuberculosis H37Rv]
gi|148662649|ref|YP_001284172.1| hypothetical protein MRA_2831 [Mycobacterium tuberculosis H37Ra]
gi|167967620|ref|ZP_02549897.1| hypothetical protein MtubH3_06126 [Mycobacterium tuberculosis
H37Ra]
10 more sequence titles
Length=384
Score = 78.2 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 34/43 (80%), Positives = 39/43 (91%), Gaps = 0/43 (0%)
Query 1 VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALGF 43
VVRKHAF+WRYD+ EELELLN+LW LVSLR NFFTPTKK +G+
Sbjct 250 VVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGY 292
>gi|340627820|ref|YP_004746272.1| hypothetical protein MCAN_28491 [Mycobacterium canettii CIPT
140010059]
gi|340006010|emb|CCC45180.1| putative uncharacterized protein bcg_2825 [Mycobacterium canettii
CIPT 140010059]
Length=384
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/43 (77%), Positives = 40/43 (94%), Gaps = 0/43 (0%)
Query 1 VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALGF 43
VVRKHAF+WRYD+ +E ELLN+LW+LVSLRLNFFTPTKK +G+
Sbjct 250 VVRKHAFYWRYDTEQERELLNRLWRLVSLRLNFFTPTKKPVGY 292
>gi|7648576|gb|AAF65592.1|AF139916_13 hypothetical protein [Brevibacterium linens]
Length=418
Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/43 (75%), Positives = 37/43 (87%), Gaps = 0/43 (0%)
Query 1 VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALGF 43
VVRKHAF+WRYD++EEL LL QLW LVSLRLNFF PTKK + +
Sbjct 285 VVRKHAFYWRYDTSEELGLLGQLWPLVSLRLNFFVPTKKPVEY 327
>gi|338753668|gb|AEI96657.1| integrase core domain-containing protein [Bifidobacterium longum
subsp. longum KACC 91563]
Length=438
Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 27/42 (65%), Positives = 37/42 (89%), Gaps = 1/42 (2%)
Query 1 VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALG 42
VVRKHAF++RY+ EL+LLN+LWQLVS+++N FTP+KK +G
Sbjct 283 VVRKHAFYYRYE-LAELDLLNELWQLVSVKVNLFTPSKKPVG 323
>gi|296454382|ref|YP_003661525.1| integrase core domain-containing protein [Bifidobacterium longum
subsp. longum JDM301]
gi|296183813|gb|ADH00695.1| Integrase core domain protein [Bifidobacterium longum subsp.
longum JDM301]
Length=432
Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 27/42 (65%), Positives = 37/42 (89%), Gaps = 1/42 (2%)
Query 1 VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALG 42
VVRKHAF++RY+ EL+LLN+LWQLVS+++N FTP+KK +G
Sbjct 277 VVRKHAFYYRYE-LAELDLLNELWQLVSVKVNLFTPSKKPVG 317
>gi|296454294|ref|YP_003661437.1| integrase core domain-containing protein [Bifidobacterium longum
subsp. longum JDM301]
gi|296183725|gb|ADH00607.1| Integrase core domain protein [Bifidobacterium longum subsp.
longum JDM301]
Length=432
Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 27/42 (65%), Positives = 37/42 (89%), Gaps = 1/42 (2%)
Query 1 VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALG 42
VVRKHAF++RY+ EL+LLN+LWQLVS+++N FTP+KK +G
Sbjct 277 VVRKHAFYYRYE-LAELDLLNELWQLVSVKVNLFTPSKKPVG 317
>gi|315656887|ref|ZP_07909774.1| integrase domain protein [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
gi|315492842|gb|EFU82446.1| integrase domain protein [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
Length=310
Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/42 (58%), Positives = 35/42 (84%), Gaps = 0/42 (0%)
Query 1 VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALG 42
VVRK+ FH+RYD+ +EL++L +LW+ V LR+N FTPT+K +G
Sbjct 174 VVRKYGFHYRYDTPKELKVLRKLWKTVCLRMNLFTPTRKPIG 215
>gi|298346652|ref|YP_003719339.1| transposase [Mobiluncus curtisii ATCC 43063]
gi|298236713|gb|ADI67845.1| transposase [Mobiluncus curtisii ATCC 43063]
Length=310
Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/42 (58%), Positives = 35/42 (84%), Gaps = 0/42 (0%)
Query 1 VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALG 42
VVRK+ FH+RYD+ +EL++L +LW+ V LR+N FTPT+K +G
Sbjct 174 VVRKYGFHYRYDTPKELKVLRKLWKTVCLRMNLFTPTRKPIG 215
>gi|304389639|ref|ZP_07371601.1| integrase domain protein [Mobiluncus curtisii subsp. curtisii
ATCC 35241]
gi|304327192|gb|EFL94428.1| integrase domain protein [Mobiluncus curtisii subsp. curtisii
ATCC 35241]
Length=293
Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/42 (58%), Positives = 35/42 (84%), Gaps = 0/42 (0%)
Query 1 VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALG 42
VVRK+ FH+RYD+ +EL++L +LW+ V LR+N FTPT+K +G
Sbjct 157 VVRKYGFHYRYDTPKELKVLRKLWKTVCLRMNLFTPTRKPIG 198
>gi|338755106|gb|AEI98095.1| integrase core domain-containing protein [Bifidobacterium longum
subsp. longum KACC 91563]
gi|338755216|gb|AEI98205.1| integrase core domain-containing protein [Bifidobacterium longum
subsp. longum KACC 91563]
Length=377
Score = 60.5 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 27/42 (65%), Positives = 37/42 (89%), Gaps = 1/42 (2%)
Query 1 VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALG 42
VVRKHAF++RY+ EL+LLN+LWQLVS+++N FTP+KK +G
Sbjct 222 VVRKHAFYYRYE-LAELDLLNELWQLVSVKVNLFTPSKKPVG 262
>gi|260907374|ref|ZP_05915696.1| Integrase catalytic region [Brevibacterium linens BL2]
Length=430
Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/43 (56%), Positives = 34/43 (80%), Gaps = 0/43 (0%)
Query 1 VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALGF 43
+VR++ F++RYD+T EL L+ LW LV+ RLN+FTPTKK G+
Sbjct 294 LVRRYGFYYRYDTTTELGLMTTLWALVNDRLNYFTPTKKPTGY 336
>gi|7477503|pir||C70990 hypothetical protein Rv3128c - Mycobacterium tuberculosis (strain
H37RV)
Length=337
Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/43 (54%), Positives = 36/43 (84%), Gaps = 0/43 (0%)
Query 1 VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALGF 43
+VRK+AF++RYD+ EE +LN++W+LV+ RLN+ TPT K +G+
Sbjct 204 LVRKYAFYYRYDTAEERAVLNRMWKLVNDRLNYLTPTIKPIGY 246
>gi|32455734|ref|NP_862568.1| hypothetical protein pCLPp01 [Mycobacterium celatum]
gi|13810877|gb|AAK40065.1| Rv3128c-like protein [Mycobacterium celatum]
Length=423
Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/43 (56%), Positives = 36/43 (84%), Gaps = 0/43 (0%)
Query 1 VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALGF 43
+VRK+AF++RYD+ EE +LN+LW+LV+ RLN+ TPT K +G+
Sbjct 290 LVRKYAFYYRYDTDEERAVLNRLWKLVNDRLNYLTPTIKPIGY 332
>gi|260905151|ref|ZP_05913473.1| Integrase catalytic region [Brevibacterium linens BL2]
Length=218
Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/43 (56%), Positives = 34/43 (80%), Gaps = 0/43 (0%)
Query 1 VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALGF 43
+VR++ F++RYD+T EL L+ LW LV+ RLN+FTPTKK G+
Sbjct 82 LVRRYGFYYRYDTTTELGLMTTLWALVNDRLNYFTPTKKPTGY 124
>gi|291516953|emb|CBK70569.1| Integrase core domain [Bifidobacterium longum subsp. longum F8]
Length=436
Score = 57.8 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 24/42 (58%), Positives = 35/42 (84%), Gaps = 1/42 (2%)
Query 1 VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALG 42
+VR+HAFH+RY + +EL LLN+LW+LV ++ N FTP+KK +G
Sbjct 281 IVRRHAFHYRY-TVDELGLLNELWELVRIKANLFTPSKKPVG 321
>gi|260906449|ref|ZP_05914771.1| Integrase catalytic region [Brevibacterium linens BL2]
Length=136
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/42 (55%), Positives = 33/42 (79%), Gaps = 0/42 (0%)
Query 2 VRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALGF 43
+R++ F++RYD+T EL L+ LW LV+ RLN+FTPTKK G+
Sbjct 1 MRRYGFYYRYDTTTELGLMTTLWALVNDRLNYFTPTKKPTGY 42
>gi|258651135|ref|YP_003200291.1| Integrase catalytic subunit [Nakamurella multipartita DSM 44233]
gi|258554360|gb|ACV77302.1| Integrase catalytic region [Nakamurella multipartita DSM 44233]
Length=418
Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/42 (55%), Positives = 34/42 (81%), Gaps = 0/42 (0%)
Query 1 VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALG 42
+VR++AF++RYD+ EE LN+LW+LV+ RLN+ TPT K +G
Sbjct 285 LVRRYAFYYRYDTDEERHALNRLWKLVNDRLNYLTPTIKPVG 326
>gi|258652108|ref|YP_003201264.1| Integrase catalytic subunit [Nakamurella multipartita DSM 44233]
gi|258555333|gb|ACV78275.1| Integrase catalytic region [Nakamurella multipartita DSM 44233]
Length=418
Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/42 (55%), Positives = 34/42 (81%), Gaps = 0/42 (0%)
Query 1 VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALG 42
+VR++AF++RYD+ EE LN+LW+LV+ RLN+ TPT K +G
Sbjct 285 LVRRYAFYYRYDTDEERHALNRLWKLVNDRLNYLTPTIKPVG 326
>gi|296169348|ref|ZP_06850973.1| integrase domain protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295895970|gb|EFG75660.1| integrase domain protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=210
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/39 (57%), Positives = 32/39 (83%), Gaps = 0/39 (0%)
Query 1 VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKK 39
+VRK+ F++RYD+ EE +LN+LW+LV+ RLN+ TPT K
Sbjct 171 LVRKYGFYYRYDTDEERAVLNRLWRLVNDRLNYLTPTIK 209
>gi|325963578|ref|YP_004241484.1| integrase family protein [Arthrobacter phenanthrenivorans Sphe3]
gi|323469665|gb|ADX73350.1| integrase family protein [Arthrobacter phenanthrenivorans Sphe3]
Length=318
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 24/35 (69%), Gaps = 0/35 (0%)
Query 2 VRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTP 36
VRKHAF +RY+S EL LLN+LW LV R N P
Sbjct 284 VRKHAFRYRYESAAELTLLNELWDLVMARKNHLLP 318
>gi|260905080|ref|ZP_05913402.1| hypothetical protein BlinB_07094 [Brevibacterium linens BL2]
Length=205
Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 19/43 (45%), Positives = 29/43 (68%), Gaps = 0/43 (0%)
Query 1 VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALGF 43
VVR++ F++RYD+ E LN+LW L + R+N+ PT K G+
Sbjct 72 VVRRYGFYYRYDTDLERRALNRLWHLDNDRVNYLMPTIKPTGY 114
>gi|260907002|ref|ZP_05915324.1| Integrase catalytic region [Brevibacterium linens BL2]
Length=389
Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/43 (45%), Positives = 28/43 (66%), Gaps = 0/43 (0%)
Query 1 VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALGF 43
+V ++ F RYD+ E LN LW+ V+ RLNFFTP +K + +
Sbjct 280 LVHEYGFVERYDTEEARSALNHLWRAVNDRLNFFTPIRKPVAW 322
>gi|120403405|ref|YP_953234.1| integrase catalytic subunit [Mycobacterium vanbaalenii PYR-1]
gi|119956223|gb|ABM13228.1| Integrase, catalytic region [Mycobacterium vanbaalenii PYR-1]
Length=410
Score = 42.0 bits (97), Expect = 0.031, Method: Composition-based stats.
Identities = 18/41 (44%), Positives = 28/41 (69%), Gaps = 0/41 (0%)
Query 1 VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKAL 41
VVR ++RYD+ EL LLN++W+L S+ N+F P +K +
Sbjct 277 VVRTVVSYYRYDTAPELLLLNEIWKLQSMLTNYFHPQQKLI 317
>gi|307299555|ref|ZP_07579354.1| Integrase catalytic region [Thermotogales bacterium MesG1.Ag.4.2]
gi|306914790|gb|EFN45178.1| Integrase catalytic region [Thermotogales bacterium MesG1.Ag.4.2]
Length=228
Score = 40.0 bits (92), Expect = 0.13, Method: Composition-based stats.
Identities = 17/41 (42%), Positives = 30/41 (74%), Gaps = 0/41 (0%)
Query 1 VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKAL 41
+VR+ ++RYD+ EEL +LN+L++ ++L N F PT+K +
Sbjct 103 LVRRAVGYYRYDTLEELSILNELYESLNLYNNHFQPTQKMI 143
>gi|254820517|ref|ZP_05225518.1| integrase catalytic subunit [Mycobacterium intracellulare ATCC
13950]
Length=417
Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 19/41 (47%), Positives = 26/41 (64%), Gaps = 0/41 (0%)
Query 1 VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKAL 41
VVR + RYD+ EL LLN++WQL S N+F P +K +
Sbjct 284 VVRTVVGYHRYDTAAELLLLNEIWQLQSKLTNYFYPQQKLI 324
>gi|260904862|ref|ZP_05913184.1| Integrase catalytic region [Brevibacterium linens BL2]
Length=323
Score = 37.7 bits (86), Expect = 0.57, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 22/28 (79%), Gaps = 0/28 (0%)
Query 1 VVRKHAFHWRYDSTEELELLNQLWQLVS 28
+VR++ F++RYD+T EL L+ LW LV+
Sbjct 294 LVRRYGFYYRYDTTTELGLMTTLWALVN 321
>gi|333990799|ref|YP_004523413.1| integrase catalytic subunit [Mycobacterium sp. JDM601]
gi|333486767|gb|AEF36159.1| integrase catalytic subunit [Mycobacterium sp. JDM601]
Length=410
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/39 (44%), Positives = 24/39 (62%), Gaps = 0/39 (0%)
Query 1 VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKK 39
VVR + RYD+ E+ LLN++W L S N+F P +K
Sbjct 277 VVRSMVGYHRYDTAAEVLLLNEIWHLQSKLTNYFYPQQK 315
>gi|333991761|ref|YP_004524375.1| integrase catalytic subunit [Mycobacterium sp. JDM601]
gi|333487729|gb|AEF37121.1| integrase catalytic subunit [Mycobacterium sp. JDM601]
Length=410
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/39 (44%), Positives = 24/39 (62%), Gaps = 0/39 (0%)
Query 1 VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKK 39
VVR + RYD+ E+ LLN++W L S N+F P +K
Sbjct 277 VVRSMVGYHRYDTAAEVLLLNEIWHLQSKLTNYFYPQQK 315
>gi|332296340|ref|YP_004438263.1| Integrase catalytic region [Thermodesulfobium narugense DSM 14796]
gi|332179443|gb|AEE15132.1| Integrase catalytic region [Thermodesulfobium narugense DSM 14796]
Length=417
Score = 36.6 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 17/41 (42%), Positives = 26/41 (64%), Gaps = 0/41 (0%)
Query 1 VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKAL 41
VVRK+ ++RYD EL L +L++ + L +NFF P K +
Sbjct 288 VVRKYVGYFRYDREVELITLKRLYESLRLYINFFQPVMKQI 328
>gi|332295603|ref|YP_004437526.1| Integrase catalytic region [Thermodesulfobium narugense DSM 14796]
gi|332178706|gb|AEE14395.1| Integrase catalytic region [Thermodesulfobium narugense DSM 14796]
Length=417
Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 17/41 (42%), Positives = 26/41 (64%), Gaps = 0/41 (0%)
Query 1 VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKAL 41
VVRK+ ++RYD EL L +L++ + L +NFF P K +
Sbjct 288 VVRKYVGYFRYDREVELITLKRLYESLRLYINFFQPIMKQI 328
>gi|31794303|ref|NP_856796.1| hypothetical protein Mb3151c [Mycobacterium bovis AF2122/97]
gi|121639010|ref|YP_979234.1| hypothetical protein BCG_3150c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|148824321|ref|YP_001289075.1| hypothetical protein TBFG_13148 [Mycobacterium tuberculosis F11]
31 more sequence titles
Length=116
Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 21/25 (84%), Gaps = 0/25 (0%)
Query 19 LLNQLWQLVSLRLNFFTPTKKALGF 43
+LN++W+LV+ RLN+ TPT K +G+
Sbjct 1 MLNRMWKLVNDRLNYLTPTIKPIGY 25
>gi|89894052|ref|YP_517539.1| hypothetical protein DSY1306 [Desulfitobacterium hafniense Y51]
gi|89333500|dbj|BAE83095.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length=390
Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 16/41 (40%), Positives = 25/41 (61%), Gaps = 0/41 (0%)
Query 1 VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKAL 41
+VR+H + RY+ L LLNQ + L+ +NFF P+ K +
Sbjct 284 LVRRHIGYGRYEGQAALALLNQYYGLLRRYVNFFQPSTKLI 324
>gi|239617520|ref|YP_002940842.1| Integrase catalytic region [Kosmotoga olearia TBF 19.5.1]
gi|239618041|ref|YP_002941363.1| Integrase catalytic region [Kosmotoga olearia TBF 19.5.1]
gi|239618189|ref|YP_002941511.1| Integrase catalytic region [Kosmotoga olearia TBF 19.5.1]
gi|239506351|gb|ACR79838.1| Integrase catalytic region [Kosmotoga olearia TBF 19.5.1]
gi|239506872|gb|ACR80359.1| Integrase catalytic region [Kosmotoga olearia TBF 19.5.1]
gi|239507020|gb|ACR80507.1| Integrase catalytic region [Kosmotoga olearia TBF 19.5.1]
Length=394
Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/41 (37%), Positives = 27/41 (66%), Gaps = 0/41 (0%)
Query 1 VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKAL 41
VVR+ ++RYD+ EE ++L +L+ ++L N F P +K +
Sbjct 273 VVRRAVGYYRYDTEEEFQILKELYASLNLYNNHFQPNQKIV 313
>gi|339626993|ref|YP_004718636.1| integrase catalytic subunit [Sulfobacillus acidophilus TPY]
gi|339284782|gb|AEJ38893.1| integrase catalytic subunit [Sulfobacillus acidophilus TPY]
Length=389
Score = 35.4 bits (80), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/42 (39%), Positives = 26/42 (62%), Gaps = 0/42 (0%)
Query 1 VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALG 42
VVR+ + RY+ E+++ LN L+ + L NFF P +KA+
Sbjct 273 VVRRFVGYLRYEGAEQVQWLNDLYATLRLYTNFFQPLQKAVA 314
>gi|339628622|ref|YP_004720265.1| hypothetical protein TPY_2362 [Sulfobacillus acidophilus TPY]
gi|339286411|gb|AEJ40522.1| hypothetical protein TPY_2362 [Sulfobacillus acidophilus TPY]
Length=281
Score = 35.4 bits (80), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/42 (39%), Positives = 26/42 (62%), Gaps = 0/42 (0%)
Query 1 VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKALG 42
VVR+ + RY+ E+++ LN L+ + L NFF P +KA+
Sbjct 165 VVRRFVGYLRYEGAEQVQWLNDLYATLRLYANFFQPLQKAVA 206
>gi|239618188|ref|YP_002941510.1| Integrase catalytic region [Kosmotoga olearia TBF 19.5.1]
gi|239507019|gb|ACR80506.1| Integrase catalytic region [Kosmotoga olearia TBF 19.5.1]
Length=394
Score = 35.0 bits (79), Expect = 3.6, Method: Composition-based stats.
Identities = 15/41 (37%), Positives = 27/41 (66%), Gaps = 0/41 (0%)
Query 1 VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKAL 41
VVR+ ++RYD+ EE ++L +L+ ++L N F P +K +
Sbjct 273 VVRRAVGYYRYDTEEEFQILKELYASLNLYNNHFQPNQKII 313
>gi|239617798|ref|YP_002941120.1| Integrase catalytic region [Kosmotoga olearia TBF 19.5.1]
gi|239506629|gb|ACR80116.1| Integrase catalytic region [Kosmotoga olearia TBF 19.5.1]
Length=394
Score = 35.0 bits (79), Expect = 3.6, Method: Composition-based stats.
Identities = 15/41 (37%), Positives = 27/41 (66%), Gaps = 0/41 (0%)
Query 1 VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKAL 41
VVR+ ++RYD+ EE ++L +L+ ++L N F P +K +
Sbjct 273 VVRRAVGYYRYDTEEEFQILKELYASLNLYNNHFQPNQKII 313
>gi|239616742|ref|YP_002940064.1| Integrase catalytic region [Kosmotoga olearia TBF 19.5.1]
gi|239505573|gb|ACR79060.1| Integrase catalytic region [Kosmotoga olearia TBF 19.5.1]
Length=394
Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 15/41 (37%), Positives = 27/41 (66%), Gaps = 0/41 (0%)
Query 1 VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKKAL 41
VVR+ ++RYD+ EE ++L +L+ ++L N F P +K +
Sbjct 273 VVRRAVGYYRYDTEEEFQILKELYASLNLYNNHFQPNQKII 313
>gi|239616771|ref|YP_002940093.1| Integrase catalytic region [Kosmotoga olearia TBF 19.5.1]
gi|239505602|gb|ACR79089.1| Integrase catalytic region [Kosmotoga olearia TBF 19.5.1]
Length=394
Score = 35.0 bits (79), Expect = 3.9, Method: Composition-based stats.
Identities = 15/39 (39%), Positives = 26/39 (67%), Gaps = 0/39 (0%)
Query 1 VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKK 39
VVR+ ++RYD+ EE ++L +L+ ++L N F P +K
Sbjct 273 VVRRAVGYYRYDTEEEFQILKELYASLNLYNNHFQPNQK 311
>gi|317121722|ref|YP_004101725.1| Integrase catalytic region [Thermaerobacter marianensis DSM 12885]
gi|317122764|ref|YP_004102767.1| Integrase catalytic region [Thermaerobacter marianensis DSM 12885]
gi|317123176|ref|YP_004103179.1| Integrase catalytic region [Thermaerobacter marianensis DSM 12885]
gi|315591702|gb|ADU50998.1| Integrase catalytic region [Thermaerobacter marianensis DSM 12885]
gi|315592744|gb|ADU52040.1| Integrase catalytic region [Thermaerobacter marianensis DSM 12885]
gi|315593156|gb|ADU52452.1| Integrase catalytic region [Thermaerobacter marianensis DSM 12885]
Length=384
Score = 34.3 bits (77), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/39 (42%), Positives = 25/39 (65%), Gaps = 0/39 (0%)
Query 1 VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKK 39
+VR+ + RYD E++E LN+L+ + L N F PT+K
Sbjct 273 LVREIVGYARYDRPEQVEQLNRLYARLDLYANLFLPTRK 311
>gi|313902057|ref|ZP_07835470.1| Integrase catalytic region [Thermaerobacter subterraneus DSM
13965]
gi|313902844|ref|ZP_07836241.1| Integrase catalytic region [Thermaerobacter subterraneus DSM
13965]
gi|313903723|ref|ZP_07837112.1| Integrase catalytic region [Thermaerobacter subterraneus DSM
13965]
gi|313465911|gb|EFR61436.1| Integrase catalytic region [Thermaerobacter subterraneus DSM
13965]
gi|313466964|gb|EFR62481.1| Integrase catalytic region [Thermaerobacter subterraneus DSM
13965]
gi|313467666|gb|EFR63167.1| Integrase catalytic region [Thermaerobacter subterraneus DSM
13965]
Length=384
Score = 34.3 bits (77), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/39 (42%), Positives = 25/39 (65%), Gaps = 0/39 (0%)
Query 1 VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKK 39
+VR+ + RYD E++E LN+L+ + L N F PT+K
Sbjct 273 LVREIVGYARYDRPEQVEQLNRLYARLDLYANLFLPTRK 311
>gi|313902786|ref|ZP_07836183.1| Integrase catalytic region [Thermaerobacter subterraneus DSM
13965]
gi|313903582|ref|ZP_07836972.1| Integrase catalytic region [Thermaerobacter subterraneus DSM
13965]
gi|313466135|gb|EFR61659.1| Integrase catalytic region [Thermaerobacter subterraneus DSM
13965]
gi|313466906|gb|EFR62423.1| Integrase catalytic region [Thermaerobacter subterraneus DSM
13965]
Length=384
Score = 34.3 bits (77), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/39 (42%), Positives = 25/39 (65%), Gaps = 0/39 (0%)
Query 1 VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKK 39
+VR+ + RYD E++E LN+L+ + L N F PT+K
Sbjct 273 LVREIVGYARYDRPEQVEQLNRLYARLDLYANLFLPTRK 311
>gi|313902437|ref|ZP_07835839.1| Integrase catalytic region [Thermaerobacter subterraneus DSM
13965]
gi|313467235|gb|EFR62747.1| Integrase catalytic region [Thermaerobacter subterraneus DSM
13965]
Length=150
Score = 33.9 bits (76), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/39 (42%), Positives = 25/39 (65%), Gaps = 0/39 (0%)
Query 1 VVRKHAFHWRYDSTEELELLNQLWQLVSLRLNFFTPTKK 39
+VR+ + RYD E++E LN+L+ + L N F PT+K
Sbjct 39 LVREIVGYARYDRPEQVEQLNRLYARLDLYANLFLPTRK 77
Lambda K H
0.327 0.139 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 128192280996
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40