BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0750
Length=81
Score E
Sequences producing significant alignments: (Bits) Value
gi|15840164|ref|NP_335201.1| hypothetical protein MT0774 [Mycoba... 168 2e-40
gi|306970972|ref|ZP_07483633.1| hypothetical protein TMJG_03967 ... 167 4e-40
gi|15607890|ref|NP_215264.1| hypothetical protein Rv0750 [Mycoba... 167 5e-40
gi|148821955|ref|YP_001286709.1| hypothetical protein TBFG_10764... 166 1e-39
gi|340625760|ref|YP_004744212.1| hypothetical protein MCAN_07451... 161 3e-38
gi|167966633|ref|ZP_02548910.1| hypothetical protein MtubH3_0059... 159 1e-37
gi|148821945|ref|YP_001286699.1| hypothetical protein TBFG_10754... 159 1e-37
gi|15607880|ref|NP_215254.1| hypothetical protein Rv0740 [Mycoba... 159 2e-37
gi|308379859|ref|ZP_07487873.2| hypothetical protein TMKG_03458 ... 158 2e-37
gi|15840150|ref|NP_335187.1| hypothetical protein MT0766 [Mycoba... 158 2e-37
gi|294996225|ref|ZP_06801916.1| hypothetical protein Mtub2_17401... 157 5e-37
gi|306796514|ref|ZP_07434816.1| hypothetical protein TMFG_03913 ... 126 9e-28
>gi|15840164|ref|NP_335201.1| hypothetical protein MT0774 [Mycobacterium tuberculosis CDC1551]
gi|148660526|ref|YP_001282049.1| hypothetical protein MRA_0759 [Mycobacterium tuberculosis H37Ra]
gi|253797695|ref|YP_003030696.1| hypothetical protein TBMG_00764 [Mycobacterium tuberculosis KZN
1435]
22 more sequence titles
Length=89
Score = 168 bits (426), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 81/81 (100%), Positives = 81/81 (100%), Gaps = 0/81 (0%)
Query 1 VRAIVGDCVIHIMPMGTGVELSKLADLALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGW 60
VRAIVGDCVIHIMPMGTGVELSKLADLALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGW
Sbjct 9 VRAIVGDCVIHIMPMGTGVELSKLADLALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGW 68
Query 61 YTQGLAPYLPGLSDPKDAAEG 81
YTQGLAPYLPGLSDPKDAAEG
Sbjct 69 YTQGLAPYLPGLSDPKDAAEG 89
>gi|306970972|ref|ZP_07483633.1| hypothetical protein TMJG_03967 [Mycobacterium tuberculosis SUMu010]
gi|308231627|ref|ZP_07413204.2| hypothetical protein TMAG_03763 [Mycobacterium tuberculosis SUMu001]
gi|308216533|gb|EFO75932.1| hypothetical protein TMAG_03763 [Mycobacterium tuberculosis SUMu001]
gi|308359428|gb|EFP48279.1| hypothetical protein TMJG_03967 [Mycobacterium tuberculosis SUMu010]
Length=89
Score = 167 bits (423), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 80/81 (99%), Positives = 81/81 (100%), Gaps = 0/81 (0%)
Query 1 VRAIVGDCVIHIMPMGTGVELSKLADLALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGW 60
VRAIVGDCVIHIMPMGTGVELSKLAD+ALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGW
Sbjct 9 VRAIVGDCVIHIMPMGTGVELSKLADVALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGW 68
Query 61 YTQGLAPYLPGLSDPKDAAEG 81
YTQGLAPYLPGLSDPKDAAEG
Sbjct 69 YTQGLAPYLPGLSDPKDAAEG 89
>gi|15607890|ref|NP_215264.1| hypothetical protein Rv0750 [Mycobacterium tuberculosis H37Rv]
gi|31791937|ref|NP_854430.1| hypothetical protein Mb0772 [Mycobacterium bovis AF2122/97]
gi|121636673|ref|YP_976896.1| hypothetical protein BCG_0801 [Mycobacterium bovis BCG str. Pasteur
1173P2]
36 more sequence titles
Length=81
Score = 167 bits (423), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 80/81 (99%), Positives = 81/81 (100%), Gaps = 0/81 (0%)
Query 1 VRAIVGDCVIHIMPMGTGVELSKLADLALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGW 60
+RAIVGDCVIHIMPMGTGVELSKLADLALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGW
Sbjct 1 MRAIVGDCVIHIMPMGTGVELSKLADLALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGW 60
Query 61 YTQGLAPYLPGLSDPKDAAEG 81
YTQGLAPYLPGLSDPKDAAEG
Sbjct 61 YTQGLAPYLPGLSDPKDAAEG 81
>gi|148821955|ref|YP_001286709.1| hypothetical protein TBFG_10764 [Mycobacterium tuberculosis F11]
gi|148720482|gb|ABR05107.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
Length=81
Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 79/81 (98%), Positives = 81/81 (100%), Gaps = 0/81 (0%)
Query 1 VRAIVGDCVIHIMPMGTGVELSKLADLALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGW 60
+RAIVGDCVIHIMPMGTGVELSKLAD+ALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGW
Sbjct 1 MRAIVGDCVIHIMPMGTGVELSKLADVALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGW 60
Query 61 YTQGLAPYLPGLSDPKDAAEG 81
YTQGLAPYLPGLSDPKDAAEG
Sbjct 61 YTQGLAPYLPGLSDPKDAAEG 81
>gi|340625760|ref|YP_004744212.1| hypothetical protein MCAN_07451 [Mycobacterium canettii CIPT
140010059]
gi|340003950|emb|CCC43085.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=175
Score = 161 bits (408), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 77/81 (96%), Positives = 79/81 (98%), Gaps = 0/81 (0%)
Query 1 VRAIVGDCVIHIMPMGTGVELSKLADLALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGW 60
VRAIVG+C I IMPMGTGVELSKLAD+ALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGW
Sbjct 95 VRAIVGNCYIEIMPMGTGVELSKLADVALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGW 154
Query 61 YTQGLAPYLPGLSDPKDAAEG 81
YTQGLAPYLPGLSDPKDAAEG
Sbjct 155 YTQGLAPYLPGLSDPKDAAEG 175
>gi|167966633|ref|ZP_02548910.1| hypothetical protein MtubH3_00591 [Mycobacterium tuberculosis
H37Ra]
Length=77
Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/77 (99%), Positives = 77/77 (100%), Gaps = 0/77 (0%)
Query 5 VGDCVIHIMPMGTGVELSKLADLALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQG 64
+GDCVIHIMPMGTGVELSKLADLALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQG
Sbjct 1 MGDCVIHIMPMGTGVELSKLADLALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQG 60
Query 65 LAPYLPGLSDPKDAAEG 81
LAPYLPGLSDPKDAAEG
Sbjct 61 LAPYLPGLSDPKDAAEG 77
>gi|148821945|ref|YP_001286699.1| hypothetical protein TBFG_10754 [Mycobacterium tuberculosis F11]
gi|167968301|ref|ZP_02550578.1| hypothetical protein MtubH3_09829 [Mycobacterium tuberculosis
H37Ra]
gi|253797684|ref|YP_003030685.1| hypothetical protein TBMG_00754 [Mycobacterium tuberculosis KZN
1435]
35 more sequence titles
Length=202
Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/81 (94%), Positives = 78/81 (97%), Gaps = 0/81 (0%)
Query 1 VRAIVGDCVIHIMPMGTGVELSKLADLALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGW 60
VRAIVG+C I IMPMGT VELSKLAD+ALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGW
Sbjct 122 VRAIVGNCYIEIMPMGTRVELSKLADVALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGW 181
Query 61 YTQGLAPYLPGLSDPKDAAEG 81
YTQGLAPYLPGLSDPKDAAEG
Sbjct 182 YTQGLAPYLPGLSDPKDAAEG 202
>gi|15607880|ref|NP_215254.1| hypothetical protein Rv0740 [Mycobacterium tuberculosis H37Rv]
gi|31791926|ref|NP_854419.1| hypothetical protein Mb0761 [Mycobacterium bovis AF2122/97]
gi|121636662|ref|YP_976885.1| hypothetical protein BCG_0790 [Mycobacterium bovis BCG str. Pasteur
1173P2]
30 more sequence titles
Length=175
Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/81 (94%), Positives = 78/81 (97%), Gaps = 0/81 (0%)
Query 1 VRAIVGDCVIHIMPMGTGVELSKLADLALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGW 60
VRAIVG+C I IMPMGT VELSKLAD+ALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGW
Sbjct 95 VRAIVGNCYIEIMPMGTRVELSKLADVALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGW 154
Query 61 YTQGLAPYLPGLSDPKDAAEG 81
YTQGLAPYLPGLSDPKDAAEG
Sbjct 155 YTQGLAPYLPGLSDPKDAAEG 175
>gi|308379859|ref|ZP_07487873.2| hypothetical protein TMKG_03458 [Mycobacterium tuberculosis SUMu011]
gi|308363335|gb|EFP52186.1| hypothetical protein TMKG_03458 [Mycobacterium tuberculosis SUMu011]
Length=77
Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 75/77 (98%), Positives = 77/77 (100%), Gaps = 0/77 (0%)
Query 5 VGDCVIHIMPMGTGVELSKLADLALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQG 64
+GDCVIHIMPMGTGVELSKLAD+ALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQG
Sbjct 1 MGDCVIHIMPMGTGVELSKLADVALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQG 60
Query 65 LAPYLPGLSDPKDAAEG 81
LAPYLPGLSDPKDAAEG
Sbjct 61 LAPYLPGLSDPKDAAEG 77
>gi|15840150|ref|NP_335187.1| hypothetical protein MT0766 [Mycobacterium tuberculosis CDC1551]
gi|13880302|gb|AAK45001.1| hypothetical protein MT0766 [Mycobacterium tuberculosis CDC1551]
Length=120
Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/81 (94%), Positives = 78/81 (97%), Gaps = 0/81 (0%)
Query 1 VRAIVGDCVIHIMPMGTGVELSKLADLALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGW 60
VRAIVG+C I IMPMGT VELSKLAD+ALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGW
Sbjct 40 VRAIVGNCYIEIMPMGTRVELSKLADVALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGW 99
Query 61 YTQGLAPYLPGLSDPKDAAEG 81
YTQGLAPYLPGLSDPKDAAEG
Sbjct 100 YTQGLAPYLPGLSDPKDAAEG 120
>gi|294996225|ref|ZP_06801916.1| hypothetical protein Mtub2_17401 [Mycobacterium tuberculosis
210]
gi|297633242|ref|ZP_06951022.1| hypothetical protein MtubK4_03920 [Mycobacterium tuberculosis
KZN 4207]
gi|297730222|ref|ZP_06959340.1| hypothetical protein MtubKR_03975 [Mycobacterium tuberculosis
KZN R506]
gi|313657549|ref|ZP_07814429.1| hypothetical protein MtubKV_03965 [Mycobacterium tuberculosis
KZN V2475]
Length=81
Score = 157 bits (397), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 75/81 (93%), Positives = 78/81 (97%), Gaps = 0/81 (0%)
Query 1 VRAIVGDCVIHIMPMGTGVELSKLADLALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGW 60
+RAIVG+C I IMPMGT VELSKLAD+ALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGW
Sbjct 1 MRAIVGNCYIEIMPMGTRVELSKLADVALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGW 60
Query 61 YTQGLAPYLPGLSDPKDAAEG 81
YTQGLAPYLPGLSDPKDAAEG
Sbjct 61 YTQGLAPYLPGLSDPKDAAEG 81
>gi|306796514|ref|ZP_07434816.1| hypothetical protein TMFG_03913 [Mycobacterium tuberculosis SUMu006]
gi|308343012|gb|EFP31863.1| hypothetical protein TMFG_03913 [Mycobacterium tuberculosis SUMu006]
Length=61
Score = 126 bits (317), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 60/61 (99%), Positives = 61/61 (100%), Gaps = 0/61 (0%)
Query 21 LSKLADLALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQGLAPYLPGLSDPKDAAE 80
+SKLADLALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQGLAPYLPGLSDPKDAAE
Sbjct 1 MSKLADLALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQGLAPYLPGLSDPKDAAE 60
Query 81 G 81
G
Sbjct 61 G 61
Lambda K H
0.319 0.140 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 128409240708
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40