BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0757
Length=247
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607897|ref|NP_215271.1| two component system response trans... 496 2e-138
gi|148660534|ref|YP_001282057.1| putative two component system r... 493 1e-137
gi|339961330|pdb|3R0J|A Chain A, Structure Of Phop From Mycobact... 484 4e-135
gi|15840172|ref|NP_335209.1| DNA-binding response regulator [Myc... 481 5e-134
gi|167968859|ref|ZP_02551136.1| putative two component system re... 478 4e-133
gi|183984910|ref|YP_001853201.1| two-component system response p... 463 9e-129
gi|118616306|ref|YP_904638.1| two component system response phos... 462 2e-128
gi|240171667|ref|ZP_04750326.1| two-component system response ph... 459 2e-127
gi|296166498|ref|ZP_06848929.1| DNA-binding response regulator [... 458 3e-127
gi|342862203|ref|ZP_08718845.1| DNA-binding response regulator P... 454 4e-126
gi|118466812|ref|YP_879977.1| DNA-binding response regulator Pho... 452 2e-125
gi|254818466|ref|ZP_05223467.1| DNA-binding response regulator P... 452 3e-125
gi|41406689|ref|NP_959525.1| PhoP [Mycobacterium avium subsp. pa... 450 9e-125
gi|339297419|gb|AEJ49529.1| DNA-binding response regulator [Myco... 447 5e-124
gi|333992254|ref|YP_004524868.1| two-component system response p... 440 8e-122
gi|118471457|ref|YP_890099.1| DNA-binding response regulator Pho... 435 3e-120
gi|108801553|ref|YP_641750.1| two component transcriptional regu... 433 1e-119
gi|120406123|ref|YP_955952.1| two component transcriptional regu... 433 1e-119
gi|145222173|ref|YP_001132851.1| two component transcriptional r... 427 5e-118
gi|169627776|ref|YP_001701425.1| putative DNA-binding response r... 413 1e-113
gi|37813698|gb|AAR04621.1| PhoP [Rhodococcus equi] 374 7e-102
gi|226304476|ref|YP_002764434.1| two-component response regulato... 374 8e-102
gi|229494339|ref|ZP_04388102.1| transcriptional regulatory prote... 373 1e-101
gi|226364243|ref|YP_002782025.1| two-component response regulato... 372 2e-101
gi|111021712|ref|YP_704684.1| response regulator, two-component ... 372 3e-101
gi|54022513|ref|YP_116755.1| putative two-component system respo... 372 3e-101
gi|262200820|ref|YP_003272028.1| response regulator receiver [Go... 372 4e-101
gi|325674850|ref|ZP_08154537.1| DNA-binding response regulator [... 371 6e-101
gi|343925788|ref|ZP_08765303.1| two-component response regulator... 369 2e-100
gi|312138242|ref|YP_004005578.1| two component system response r... 364 5e-99
gi|296141305|ref|YP_003648548.1| winged helix family two compone... 363 2e-98
gi|326384016|ref|ZP_08205699.1| response regulator receiver [Gor... 358 4e-97
gi|319951282|ref|ZP_08025117.1| DNA-binding response regulator P... 355 3e-96
gi|284993022|ref|YP_003411576.1| winged helix family two compone... 325 3e-87
gi|317509453|ref|ZP_07967071.1| response regulator receiver doma... 322 3e-86
gi|25029050|ref|NP_739104.1| hypothetical protein CE2494 [Coryne... 320 1e-85
gi|259505958|ref|ZP_05748860.1| DNA-binding response regulator [... 319 2e-85
gi|172041315|ref|YP_001801029.1| two-component system response r... 318 4e-85
gi|296392538|ref|YP_003657422.1| PhoB family transcriptional reg... 318 5e-85
gi|269124841|ref|YP_003298211.1| winged helix family two compone... 318 7e-85
gi|300780471|ref|ZP_07090327.1| response regulator [Corynebacter... 317 1e-84
gi|311740194|ref|ZP_07714026.1| response regulator [Corynebacter... 315 4e-84
gi|271970059|ref|YP_003344255.1| response regulator receiver pro... 315 4e-84
gi|255325893|ref|ZP_05366985.1| alkaline phosphatase synthesis t... 314 6e-84
gi|330469914|ref|YP_004407657.1| winged helix family two compone... 314 1e-83
gi|237784979|ref|YP_002905684.1| two-component system response r... 313 1e-83
gi|336324700|ref|YP_004604666.1| two-component system response r... 313 1e-83
gi|238060857|ref|ZP_04605566.1| winged helix family two-componen... 312 2e-83
gi|145296603|ref|YP_001139424.1| hypothetical protein cgR_2511 [... 312 2e-83
gi|227502103|ref|ZP_03932152.1| response regulator [Corynebacter... 312 3e-83
>gi|15607897|ref|NP_215271.1| two component system response transcriptional positive regulator
PHOP [Mycobacterium tuberculosis H37Rv]
gi|31791945|ref|NP_854438.1| two component system response transcriptional positive regulator
PHOP [Mycobacterium bovis AF2122/97]
gi|121636681|ref|YP_976904.1| putative two component system response transcriptional positive
regulator phoP [Mycobacterium bovis BCG str. Pasteur 1173P2]
68 more sequence titles
Length=247
Score = 496 bits (1276), Expect = 2e-138, Method: Compositional matrix adjust.
Identities = 247/247 (100%), Positives = 247/247 (100%), Gaps = 0/247 (0%)
Query 1 MRKGVDLVTAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRA 60
MRKGVDLVTAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRA
Sbjct 1 MRKGVDLVTAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRA 60
Query 61 RETRPDAVILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVT 120
RETRPDAVILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVT
Sbjct 61 RETRPDAVILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVT 120
Query 121 KPFSLEEVVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFT 180
KPFSLEEVVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFT
Sbjct 121 KPFSLEEVVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFT 180
Query 181 LLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVG 240
LLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVG
Sbjct 181 LLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVG 240
Query 241 YVLREPR 247
YVLREPR
Sbjct 241 YVLREPR 247
>gi|148660534|ref|YP_001282057.1| putative two component system response transcriptional positive
regulator PhoP [Mycobacterium tuberculosis H37Ra]
gi|148504686|gb|ABQ72495.1| putative two component system response transcriptional positive
regulator PhoP [Mycobacterium tuberculosis H37Ra]
Length=247
Score = 493 bits (1268), Expect = 1e-137, Method: Compositional matrix adjust.
Identities = 246/247 (99%), Positives = 246/247 (99%), Gaps = 0/247 (0%)
Query 1 MRKGVDLVTAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRA 60
MRKGVDLVTAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRA
Sbjct 1 MRKGVDLVTAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRA 60
Query 61 RETRPDAVILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVT 120
RETRPDAVILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVT
Sbjct 61 RETRPDAVILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVT 120
Query 121 KPFSLEEVVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFT 180
KPFSLEEVVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFT
Sbjct 121 KPFSLEEVVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFT 180
Query 181 LLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVG 240
LLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYV YLRRKIDTGEKRLLHTLRGVG
Sbjct 181 LLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVLYLRRKIDTGEKRLLHTLRGVG 240
Query 241 YVLREPR 247
YVLREPR
Sbjct 241 YVLREPR 247
>gi|339961330|pdb|3R0J|A Chain A, Structure Of Phop From Mycobacterium Tuberculosis
gi|339961331|pdb|3R0J|B Chain B, Structure Of Phop From Mycobacterium Tuberculosis
Length=250
Score = 484 bits (1247), Expect = 4e-135, Method: Compositional matrix adjust.
Identities = 243/246 (99%), Positives = 243/246 (99%), Gaps = 0/246 (0%)
Query 2 RKGVDLVTAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRAR 61
RKGVDLVTAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRAR
Sbjct 5 RKGVDLVTAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRAR 64
Query 62 ETRPDAVILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTK 121
ETRPDAVILDV PG DGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTK
Sbjct 65 ETRPDAVILDVXXPGXDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTK 124
Query 122 PFSLEEVVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTL 181
PFSLEEVVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTL
Sbjct 125 PFSLEEVVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTL 184
Query 182 LRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGY 241
LRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGY
Sbjct 185 LRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGY 244
Query 242 VLREPR 247
VLREPR
Sbjct 245 VLREPR 250
>gi|15840172|ref|NP_335209.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
gi|306966786|ref|ZP_07479447.1| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis SUMu009]
gi|308379861|ref|ZP_07487881.2| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis SUMu011]
gi|13880325|gb|AAK45023.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
gi|308355483|gb|EFP44334.1| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis SUMu009]
gi|308363343|gb|EFP52194.1| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis SUMu011]
Length=240
Score = 481 bits (1237), Expect = 5e-134, Method: Compositional matrix adjust.
Identities = 239/240 (99%), Positives = 240/240 (100%), Gaps = 0/240 (0%)
Query 8 VTAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDA 67
+TAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDA
Sbjct 1 MTAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDA 60
Query 68 VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE 127
VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE
Sbjct 61 VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE 120
Query 128 VVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI 187
VVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI
Sbjct 121 VVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI 180
Query 188 NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 247
NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR
Sbjct 181 NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 240
>gi|167968859|ref|ZP_02551136.1| putative two component system response transcriptional positive
regulator PhoP [Mycobacterium tuberculosis H37Ra]
gi|308397079|ref|ZP_07492385.2| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis SUMu012]
gi|308367020|gb|EFP55871.1| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis SUMu012]
Length=240
Score = 478 bits (1229), Expect = 4e-133, Method: Compositional matrix adjust.
Identities = 238/240 (99%), Positives = 239/240 (99%), Gaps = 0/240 (0%)
Query 8 VTAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDA 67
+TAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDA
Sbjct 1 MTAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDA 60
Query 68 VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE 127
VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE
Sbjct 61 VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE 120
Query 128 VVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI 187
VVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI
Sbjct 121 VVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI 180
Query 188 NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 247
NAGTVLSKPKILDHVWRYDFGGDVNVVESYV YLRRKIDTGEKRLLHTLRGVGYVLREPR
Sbjct 181 NAGTVLSKPKILDHVWRYDFGGDVNVVESYVLYLRRKIDTGEKRLLHTLRGVGYVLREPR 240
>gi|183984910|ref|YP_001853201.1| two-component system response phosphate regulon transcriptional
regulator, PhoP [Mycobacterium marinum M]
gi|183178236|gb|ACC43346.1| two-component system response phosphate regulon transcriptional
regulator, PhoP [Mycobacterium marinum M]
Length=240
Score = 463 bits (1192), Expect = 9e-129, Method: Compositional matrix adjust.
Identities = 230/240 (96%), Positives = 235/240 (98%), Gaps = 0/240 (0%)
Query 8 VTAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDA 67
+TA TPGE TTPEAR+LVVDDE NIVELLSVSLKFQGFEV+TATNGAQALDRARETRPDA
Sbjct 1 MTATTPGEATTPEARILVVDDEDNIVELLSVSLKFQGFEVHTATNGAQALDRARETRPDA 60
Query 68 VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE 127
VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE
Sbjct 61 VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE 120
Query 128 VVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI 187
VVARLRVILRRAGKG+ EPRN RLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI
Sbjct 121 VVARLRVILRRAGKGSAEPRNSRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI 180
Query 188 NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 247
NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTG+KRLLHTLRGVGYVLREPR
Sbjct 181 NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGDKRLLHTLRGVGYVLREPR 240
>gi|118616306|ref|YP_904638.1| two component system response phosphate regulon transcriptional
regulator, PhoP [Mycobacterium ulcerans Agy99]
gi|118568416|gb|ABL03167.1| two component system response phosphate regulon transcriptional
regulator, PhoP [Mycobacterium ulcerans Agy99]
Length=240
Score = 462 bits (1188), Expect = 2e-128, Method: Compositional matrix adjust.
Identities = 229/240 (96%), Positives = 235/240 (98%), Gaps = 0/240 (0%)
Query 8 VTAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDA 67
+TA TPGE TTPEAR+LVVDDE NIVELLSVSLKFQGFEV+TATNGAQALDRARETRPDA
Sbjct 1 MTATTPGEATTPEARILVVDDEDNIVELLSVSLKFQGFEVHTATNGAQALDRARETRPDA 60
Query 68 VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE 127
VILDVMMPGMDGFGVLRRL+ADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE
Sbjct 61 VILDVMMPGMDGFGVLRRLQADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE 120
Query 128 VVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI 187
VVARLRVILRRAGKG+ EPRN RLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI
Sbjct 121 VVARLRVILRRAGKGSAEPRNSRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI 180
Query 188 NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 247
NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTG+KRLLHTLRGVGYVLREPR
Sbjct 181 NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGDKRLLHTLRGVGYVLREPR 240
>gi|240171667|ref|ZP_04750326.1| two-component system response phosphate regulon transcriptional
regulator, PhoP [Mycobacterium kansasii ATCC 12478]
Length=240
Score = 459 bits (1180), Expect = 2e-127, Method: Compositional matrix adjust.
Identities = 227/240 (95%), Positives = 233/240 (98%), Gaps = 0/240 (0%)
Query 8 VTAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDA 67
+TA PGE TPEAR+LVVDDEANIVELLSVSLKFQGFEV+TA+NGAQALDRARE RPDA
Sbjct 1 MTAVNPGEAGTPEARILVVDDEANIVELLSVSLKFQGFEVHTASNGAQALDRAREARPDA 60
Query 68 VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE 127
VILDVMMPGMDGFGVLRRLRADG+DAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE
Sbjct 61 VILDVMMPGMDGFGVLRRLRADGVDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE 120
Query 128 VVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI 187
VVARLRVILRRAGKG+ EPRN RLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI
Sbjct 121 VVARLRVILRRAGKGSAEPRNSRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI 180
Query 188 NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 247
NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR
Sbjct 181 NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 240
>gi|296166498|ref|ZP_06848929.1| DNA-binding response regulator [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295898110|gb|EFG77685.1| DNA-binding response regulator [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=239
Score = 458 bits (1178), Expect = 3e-127, Method: Compositional matrix adjust.
Identities = 230/240 (96%), Positives = 232/240 (97%), Gaps = 1/240 (0%)
Query 8 VTAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDA 67
+TA TP E T PEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARE RPDA
Sbjct 1 MTAATPNE-TKPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRAREARPDA 59
Query 68 VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE 127
VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE
Sbjct 60 VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE 119
Query 128 VVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI 187
VVARLRVILRRAGKG EPR+ RLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI
Sbjct 120 VVARLRVILRRAGKGGAEPRSARLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI 179
Query 188 NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 247
NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR
Sbjct 180 NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 239
>gi|342862203|ref|ZP_08718845.1| DNA-binding response regulator PhoP [Mycobacterium colombiense
CECT 3035]
gi|342130281|gb|EGT83601.1| DNA-binding response regulator PhoP [Mycobacterium colombiense
CECT 3035]
Length=239
Score = 454 bits (1169), Expect = 4e-126, Method: Compositional matrix adjust.
Identities = 227/240 (95%), Positives = 232/240 (97%), Gaps = 1/240 (0%)
Query 8 VTAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDA 67
+T+ TP +T PEAR+LVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARE RPDA
Sbjct 1 MTSTTP-SDTKPEARILVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRAREARPDA 59
Query 68 VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE 127
VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE
Sbjct 60 VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE 119
Query 128 VVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI 187
VVARLRVILRRAGKG EPR+ RLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI
Sbjct 120 VVARLRVILRRAGKGGAEPRSARLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI 179
Query 188 NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 247
NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR
Sbjct 180 NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 239
>gi|118466812|ref|YP_879977.1| DNA-binding response regulator PhoP [Mycobacterium avium 104]
gi|254773640|ref|ZP_05215156.1| DNA-binding response regulator PhoP [Mycobacterium avium subsp.
avium ATCC 25291]
gi|118168099|gb|ABK68996.1| DNA-binding response regulator PhoP [Mycobacterium avium 104]
gi|336458353|gb|EGO37331.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Mycobacterium avium subsp. paratuberculosis
S397]
Length=239
Score = 452 bits (1162), Expect = 2e-125, Method: Compositional matrix adjust.
Identities = 226/240 (95%), Positives = 231/240 (97%), Gaps = 1/240 (0%)
Query 8 VTAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDA 67
+T+ TP + PEARVLVVDDEANIVELLSVSLKFQGFEV+TATNGAQALDRARE RPDA
Sbjct 1 MTSATP-TDAKPEARVLVVDDEANIVELLSVSLKFQGFEVHTATNGAQALDRAREARPDA 59
Query 68 VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE 127
VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE
Sbjct 60 VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE 119
Query 128 VVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI 187
VVARLRVILRRAGKG EPR+ RLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI
Sbjct 120 VVARLRVILRRAGKGGAEPRSARLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI 179
Query 188 NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 247
NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR
Sbjct 180 NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 239
>gi|254818466|ref|ZP_05223467.1| DNA-binding response regulator PhoP [Mycobacterium intracellulare
ATCC 13950]
Length=239
Score = 452 bits (1162), Expect = 3e-125, Method: Compositional matrix adjust.
Identities = 227/240 (95%), Positives = 231/240 (97%), Gaps = 1/240 (0%)
Query 8 VTAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDA 67
+T+ TP +T PEARVLVVDDEANIVELLSVSLKFQGFEV TATNGAQALDRARE RPDA
Sbjct 1 MTSPTP-SDTKPEARVLVVDDEANIVELLSVSLKFQGFEVCTATNGAQALDRAREARPDA 59
Query 68 VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE 127
VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE
Sbjct 60 VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE 119
Query 128 VVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI 187
VVARLRVILRRAGKG EPR+ RLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI
Sbjct 120 VVARLRVILRRAGKGGAEPRSARLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI 179
Query 188 NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 247
NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR
Sbjct 180 NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 239
>gi|41406689|ref|NP_959525.1| PhoP [Mycobacterium avium subsp. paratuberculosis K-10]
gi|41395039|gb|AAS02908.1| PhoP [Mycobacterium avium subsp. paratuberculosis K-10]
Length=239
Score = 450 bits (1158), Expect = 9e-125, Method: Compositional matrix adjust.
Identities = 225/240 (94%), Positives = 230/240 (96%), Gaps = 1/240 (0%)
Query 8 VTAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDA 67
+T+ TP + PEARVLVVDDEANIVELLSVSLKFQGFEV+TATNGAQALDRARE RPDA
Sbjct 1 MTSATP-TDAKPEARVLVVDDEANIVELLSVSLKFQGFEVHTATNGAQALDRAREARPDA 59
Query 68 VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE 127
VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE
Sbjct 60 VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE 119
Query 128 VVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI 187
VVARLRVILRRAGKG EPR+ RLTFADIELDEETHEVWKAGQPVSLSP EFTLLRYFVI
Sbjct 120 VVARLRVILRRAGKGGAEPRSARLTFADIELDEETHEVWKAGQPVSLSPNEFTLLRYFVI 179
Query 188 NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 247
NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR
Sbjct 180 NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 239
>gi|339297419|gb|AEJ49529.1| DNA-binding response regulator [Mycobacterium tuberculosis CCDC5180]
Length=223
Score = 447 bits (1151), Expect = 5e-124, Method: Compositional matrix adjust.
Identities = 222/223 (99%), Positives = 223/223 (100%), Gaps = 0/223 (0%)
Query 25 VVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGFGVLR 84
+VDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGFGVLR
Sbjct 1 MVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGFGVLR 60
Query 85 RLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGKGNK 144
RLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGKGNK
Sbjct 61 RLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGKGNK 120
Query 145 EPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHVWR 204
EPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHVWR
Sbjct 121 EPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHVWR 180
Query 205 YDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 247
YDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR
Sbjct 181 YDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 223
>gi|333992254|ref|YP_004524868.1| two-component system response phosphate regulon transcriptional
regulator PhoP [Mycobacterium sp. JDM601]
gi|333488222|gb|AEF37614.1| two-component system response phosphate regulon transcriptional
regulator PhoP [Mycobacterium sp. JDM601]
Length=239
Score = 440 bits (1132), Expect = 8e-122, Method: Compositional matrix adjust.
Identities = 217/237 (92%), Positives = 224/237 (95%), Gaps = 0/237 (0%)
Query 11 GTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVIL 70
T ++ PEAR+LVVDDE NIVELLSVSLKFQGFEVYTA++G ALDRARE RPDAVIL
Sbjct 3 ATAAQDAAPEARILVVDDETNIVELLSVSLKFQGFEVYTASSGPAALDRAREVRPDAVIL 62
Query 71 DVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVA 130
DVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKI GLTLGGDDYVTKPFSLEEVVA
Sbjct 63 DVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKITGLTLGGDDYVTKPFSLEEVVA 122
Query 131 RLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAG 190
RLRVILRRAGKG EPRN RL+FADIELDE+THEVWKAGQPVSLSPTEFTLLRYFVINAG
Sbjct 123 RLRVILRRAGKGAGEPRNSRLSFADIELDEDTHEVWKAGQPVSLSPTEFTLLRYFVINAG 182
Query 191 TVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 247
TVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR
Sbjct 183 TVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 239
>gi|118471457|ref|YP_890099.1| DNA-binding response regulator PhoP [Mycobacterium smegmatis
str. MC2 155]
gi|118172744|gb|ABK73640.1| DNA-binding response regulator PhoP [Mycobacterium smegmatis
str. MC2 155]
Length=239
Score = 435 bits (1118), Expect = 3e-120, Method: Compositional matrix adjust.
Identities = 214/231 (93%), Positives = 224/231 (97%), Gaps = 0/231 (0%)
Query 17 TTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPG 76
PEARVLVVDDEANIVELLSVSLKFQGFEV+TA+NGA ALD+ARE RPDAVILDVMMPG
Sbjct 9 NVPEARVLVVDDEANIVELLSVSLKFQGFEVHTASNGAAALDKAREVRPDAVILDVMMPG 68
Query 77 MDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVIL 136
MDGFG+LRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVIL
Sbjct 69 MDGFGLLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVIL 128
Query 137 RRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKP 196
RR+G+G +E RN RLTFADIELDE+THEVWKAG+PVSLSPTEFTLLRYF+INAGTVLSKP
Sbjct 129 RRSGRGVEETRNARLTFADIELDEDTHEVWKAGEPVSLSPTEFTLLRYFIINAGTVLSKP 188
Query 197 KILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 247
KILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR
Sbjct 189 KILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 239
>gi|108801553|ref|YP_641750.1| two component transcriptional regulator [Mycobacterium sp. MCS]
gi|119870707|ref|YP_940659.1| two component transcriptional regulator [Mycobacterium sp. KMS]
gi|126437538|ref|YP_001073229.1| two component transcriptional regulator [Mycobacterium sp. JLS]
gi|108771972|gb|ABG10694.1| two component transcriptional regulator, winged helix family
[Mycobacterium sp. MCS]
gi|119696796|gb|ABL93869.1| two component transcriptional regulator, winged helix family
[Mycobacterium sp. KMS]
gi|126237338|gb|ABO00739.1| two component transcriptional regulator, winged helix family
[Mycobacterium sp. JLS]
Length=239
Score = 433 bits (1114), Expect = 1e-119, Method: Compositional matrix adjust.
Identities = 211/232 (91%), Positives = 225/232 (97%), Gaps = 0/232 (0%)
Query 16 NTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMP 75
TTPEARVLVVDDEANIVELLSVSLKFQGFEV+TA++GA ALD+AR+ RPDAVILDVMMP
Sbjct 8 ETTPEARVLVVDDEANIVELLSVSLKFQGFEVHTASDGASALDKARDVRPDAVILDVMMP 67
Query 76 GMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVI 135
GMDGFG+LRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVI
Sbjct 68 GMDGFGLLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVI 127
Query 136 LRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSK 195
LRR G+G +EP+ RL+FADIELDE+THEVWKAG+PVSLSPTEFTLLRYF+INAGTVLSK
Sbjct 128 LRRTGRGAEEPKTSRLSFADIELDEDTHEVWKAGEPVSLSPTEFTLLRYFIINAGTVLSK 187
Query 196 PKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 247
PKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGE+RLLHTLRGVGYVLREPR
Sbjct 188 PKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGERRLLHTLRGVGYVLREPR 239
>gi|120406123|ref|YP_955952.1| two component transcriptional regulator [Mycobacterium vanbaalenii
PYR-1]
gi|119958941|gb|ABM15946.1| two component transcriptional regulator, winged helix family
[Mycobacterium vanbaalenii PYR-1]
Length=236
Score = 433 bits (1113), Expect = 1e-119, Method: Compositional matrix adjust.
Identities = 212/235 (91%), Positives = 225/235 (96%), Gaps = 0/235 (0%)
Query 13 PGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDV 72
P PEARVLVVDDEANIVELLSVSLKFQGFEV+TA+NG ALD+ARE RPDA+ILDV
Sbjct 2 PVPENVPEARVLVVDDEANIVELLSVSLKFQGFEVHTASNGPAALDKAREVRPDAIILDV 61
Query 73 MMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARL 132
MMPGMDGFG+LRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARL
Sbjct 62 MMPGMDGFGLLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARL 121
Query 133 RVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTV 192
RVILRR+G+G++EPR RLTFADIELDE+THEVWKAG+PVSLSPTEFTLLRYF+INAGTV
Sbjct 122 RVILRRSGRGHEEPRTSRLTFADIELDEDTHEVWKAGEPVSLSPTEFTLLRYFIINAGTV 181
Query 193 LSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 247
LSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTG+KRLLHTLRGVGYVLREPR
Sbjct 182 LSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGDKRLLHTLRGVGYVLREPR 236
>gi|145222173|ref|YP_001132851.1| two component transcriptional regulator [Mycobacterium gilvum
PYR-GCK]
gi|315442611|ref|YP_004075490.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Mycobacterium sp. Spyr1]
gi|145214659|gb|ABP44063.1| two component transcriptional regulator, winged helix family
[Mycobacterium gilvum PYR-GCK]
gi|315260914|gb|ADT97655.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Mycobacterium sp. Spyr1]
Length=238
Score = 427 bits (1099), Expect = 5e-118, Method: Compositional matrix adjust.
Identities = 211/235 (90%), Positives = 222/235 (95%), Gaps = 0/235 (0%)
Query 13 PGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDV 72
P PEARVLVVDDEANIVELLSVSLKFQGFEV+TA+NG ALD+ARE RPDA+ILDV
Sbjct 4 PVPENVPEARVLVVDDEANIVELLSVSLKFQGFEVHTASNGPAALDKAREVRPDAIILDV 63
Query 73 MMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARL 132
MMPGMDGFG+LRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARL
Sbjct 64 MMPGMDGFGLLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARL 123
Query 133 RVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTV 192
RVILRR+G +EPR RLTFADIELDE+THEVWKAG+PVSLSPTEFTLLRYF+INAGTV
Sbjct 124 RVILRRSGGRVQEPRTSRLTFADIELDEDTHEVWKAGEPVSLSPTEFTLLRYFIINAGTV 183
Query 193 LSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 247
LSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTG+KRLLHTLRGVGYVLREPR
Sbjct 184 LSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGDKRLLHTLRGVGYVLREPR 238
>gi|169627776|ref|YP_001701425.1| putative DNA-binding response regulator PhoP [Mycobacterium abscessus
ATCC 19977]
gi|169239743|emb|CAM60771.1| Putative DNA-binding response regulator PhoP [Mycobacterium abscessus]
Length=247
Score = 413 bits (1062), Expect = 1e-113, Method: Compositional matrix adjust.
Identities = 205/237 (87%), Positives = 217/237 (92%), Gaps = 0/237 (0%)
Query 11 GTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVIL 70
GT N T A+VLVVDDE+NIVELLSVSLKFQGF+VYTA +GA ALD AR RPDAVIL
Sbjct 11 GTFSANGTTPAKVLVVDDESNIVELLSVSLKFQGFDVYTADSGAAALDLARTVRPDAVIL 70
Query 71 DVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVA 130
DVMMPGMDGFGVLRRLRADGIDAP LFLTARD LQDKIAGLTLG DDYVTKPFSLEEVVA
Sbjct 71 DVMMPGMDGFGVLRRLRADGIDAPTLFLTARDGLQDKIAGLTLGADDYVTKPFSLEEVVA 130
Query 131 RLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAG 190
RLRVILRR+G G++ R RL+FADIELDE+THEVWKAG+PV+LSPTEFTLLRYF+INAG
Sbjct 131 RLRVILRRSGMGSEPARKSRLSFADIELDEDTHEVWKAGEPVALSPTEFTLLRYFMINAG 190
Query 191 TVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 247
TVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKID GEKRLLHTLRGVGYVLREPR
Sbjct 191 TVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDNGEKRLLHTLRGVGYVLREPR 247
>gi|37813698|gb|AAR04621.1| PhoP [Rhodococcus equi]
Length=242
Score = 374 bits (960), Expect = 7e-102, Method: Compositional matrix adjust.
Identities = 180/234 (77%), Positives = 211/234 (91%), Gaps = 1/234 (0%)
Query 14 GENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVM 73
G + TP+ RVL+VDDE ++VELLSVSL+FQGFEV TA NGA+ LD+AR RPDA+ILDVM
Sbjct 10 GVSETPQVRVLIVDDEPSLVELLSVSLRFQGFEVETAANGAEGLDKARAFRPDALILDVM 69
Query 74 MPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLR 133
MPGMDGFG+LRRLRADG+DAP LFLTARD+++DK+ GLT+G DDYVTKPFSLEEVV RLR
Sbjct 70 MPGMDGFGMLRRLRADGVDAPVLFLTARDAVEDKVTGLTIGADDYVTKPFSLEEVVTRLR 129
Query 134 VILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVL 193
VILRRAG + + ++ R+TFAD+ELD++T EVWKAG+PVSLSPTEFTLLRYF++NAGTVL
Sbjct 130 VILRRAGHSD-DKQSARVTFADLELDDDTREVWKAGEPVSLSPTEFTLLRYFMVNAGTVL 188
Query 194 SKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 247
SKP+ILDHVW YDFGG+V VVESYVSYLRRKIDT E RL+HTLRGVGYV+REPR
Sbjct 189 SKPRILDHVWNYDFGGEVGVVESYVSYLRRKIDTTEPRLIHTLRGVGYVMREPR 242
>gi|226304476|ref|YP_002764434.1| two-component response regulator PhoP [Rhodococcus erythropolis
PR4]
gi|226183591|dbj|BAH31695.1| two-component response regulator PhoP [Rhodococcus erythropolis
PR4]
Length=243
Score = 374 bits (959), Expect = 8e-102, Method: Compositional matrix adjust.
Identities = 181/232 (79%), Positives = 207/232 (90%), Gaps = 0/232 (0%)
Query 16 NTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMP 75
+ TPEAR+LVVDDE IVELLSVSL+FQGFEV TA++GAQ LD AR RPDA++LDVMMP
Sbjct 11 DKTPEARILVVDDEPTIVELLSVSLRFQGFEVATASSGAQGLDVARTFRPDAIVLDVMMP 70
Query 76 GMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVI 135
GMDGFG+LRRLRADG+DAP LFLTA+DSL DKI+GLTLG DDYVTKPFSLEEVV RLRVI
Sbjct 71 GMDGFGLLRRLRADGVDAPVLFLTAKDSLDDKISGLTLGADDYVTKPFSLEEVVTRLRVI 130
Query 136 LRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSK 195
LRRAG+G ++ R+ FADIELD++T EVWK G+ V+LSPTEFTLLRYF++NAGTVLSK
Sbjct 131 LRRAGRGVAPEQSPRVKFADIELDDDTREVWKKGELVALSPTEFTLLRYFMVNAGTVLSK 190
Query 196 PKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 247
P+ILDHVW YDFGG+V VVESYVSYLRRK+DTGE L+HTLRGVGYV+REPR
Sbjct 191 PRILDHVWNYDFGGEVGVVESYVSYLRRKVDTGETPLIHTLRGVGYVMREPR 242
>gi|229494339|ref|ZP_04388102.1| transcriptional regulatory protein [Rhodococcus erythropolis
SK121]
gi|229318701|gb|EEN84559.1| transcriptional regulatory protein [Rhodococcus erythropolis
SK121]
Length=235
Score = 373 bits (958), Expect = 1e-101, Method: Compositional matrix adjust.
Identities = 181/232 (79%), Positives = 207/232 (90%), Gaps = 0/232 (0%)
Query 16 NTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMP 75
+ TPEAR+LVVDDE IVELLSVSL+FQGFEV TA++GAQ LD AR RPDA++LDVMMP
Sbjct 3 DKTPEARILVVDDEPTIVELLSVSLRFQGFEVATASSGAQGLDVARTFRPDAIVLDVMMP 62
Query 76 GMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVI 135
GMDGFG+LRRLRADG+DAP LFLTA+DSL DKI+GLTLG DDYVTKPFSLEEVV RLRVI
Sbjct 63 GMDGFGLLRRLRADGVDAPVLFLTAKDSLDDKISGLTLGADDYVTKPFSLEEVVTRLRVI 122
Query 136 LRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSK 195
LRRAG+G ++ R+ FADIELD++T EVWK G+ V+LSPTEFTLLRYF++NAGTVLSK
Sbjct 123 LRRAGRGVAPEQSPRVKFADIELDDDTREVWKKGELVALSPTEFTLLRYFMVNAGTVLSK 182
Query 196 PKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 247
P+ILDHVW YDFGG+V VVESYVSYLRRK+DTGE L+HTLRGVGYV+REPR
Sbjct 183 PRILDHVWNYDFGGEVGVVESYVSYLRRKVDTGETPLIHTLRGVGYVMREPR 234
>gi|226364243|ref|YP_002782025.1| two-component response regulator PhoP [Rhodococcus opacus B4]
gi|226242732|dbj|BAH53080.1| two-component response regulator PhoP [Rhodococcus opacus B4]
Length=240
Score = 372 bits (956), Expect = 2e-101, Method: Compositional matrix adjust.
Identities = 183/233 (79%), Positives = 208/233 (90%), Gaps = 1/233 (0%)
Query 16 NTTP-EARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMM 74
N P EARVLVVDDE NI+ELLSVSL+FQGFEV TA+ GA+ LD AR RPDAVILDVMM
Sbjct 7 NEKPVEARVLVVDDEPNILELLSVSLRFQGFEVATASTGAEGLDTARTFRPDAVILDVMM 66
Query 75 PGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRV 134
PGMDGFG+L+RLRADG+DAP LFLTA+D+++DKI+GLTLG DDYVTKPFSLEEVV RLRV
Sbjct 67 PGMDGFGLLKRLRADGVDAPVLFLTAKDAVEDKISGLTLGADDYVTKPFSLEEVVTRLRV 126
Query 135 ILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLS 194
ILRRAGK + E ++ R+ FADIELD++T EVWKAG VSLSPTEFTLLRYF++NAGTVLS
Sbjct 127 ILRRAGKVSVEEQSARIKFADIELDDDTREVWKAGDLVSLSPTEFTLLRYFMVNAGTVLS 186
Query 195 KPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 247
KP+ILDHVW YDFGG+V VVESYVSYLRRK+DTGE L+HTLRGVGYV+REPR
Sbjct 187 KPRILDHVWNYDFGGEVGVVESYVSYLRRKVDTGETPLIHTLRGVGYVMREPR 239
>gi|111021712|ref|YP_704684.1| response regulator, two-component system [Rhodococcus jostii
RHA1]
gi|110821242|gb|ABG96526.1| response regulator, two-component system [Rhodococcus jostii
RHA1]
Length=235
Score = 372 bits (955), Expect = 3e-101, Method: Compositional matrix adjust.
Identities = 183/233 (79%), Positives = 208/233 (90%), Gaps = 1/233 (0%)
Query 16 NTTP-EARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMM 74
N P EARVLVVDDE NI+ELLSVSL+FQGFEV TA+ GA+ LD AR RPDAVILDVMM
Sbjct 2 NEKPVEARVLVVDDEPNILELLSVSLRFQGFEVATASTGAEGLDTARTFRPDAVILDVMM 61
Query 75 PGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRV 134
PGMDGFG+L+RLRADG+DAP LFLTA+D+++DKI+GLTLG DDYVTKPFSLEEVV RLRV
Sbjct 62 PGMDGFGLLKRLRADGVDAPVLFLTAKDAVEDKISGLTLGADDYVTKPFSLEEVVTRLRV 121
Query 135 ILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLS 194
ILRRAGK + E ++ R+ FADIELD++T EVWKAG VSLSPTEFTLLRYF++NAGTVLS
Sbjct 122 ILRRAGKVSVEEQSARIKFADIELDDDTREVWKAGDLVSLSPTEFTLLRYFMVNAGTVLS 181
Query 195 KPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 247
KP+ILDHVW YDFGG+V VVESYVSYLRRK+DTGE L+HTLRGVGYV+REPR
Sbjct 182 KPRILDHVWNYDFGGEVGVVESYVSYLRRKVDTGETPLIHTLRGVGYVMREPR 234
>gi|54022513|ref|YP_116755.1| putative two-component system response regulator [Nocardia farcinica
IFM 10152]
gi|54014021|dbj|BAD55391.1| putative two-component system response regulator [Nocardia farcinica
IFM 10152]
Length=239
Score = 372 bits (955), Expect = 3e-101, Method: Compositional matrix adjust.
Identities = 180/228 (79%), Positives = 205/228 (90%), Gaps = 0/228 (0%)
Query 19 PEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMD 78
PEARVLVVDDE IVELLSVSL+FQGFEV TA +GAQALD+AR RP A+I+DVMMPG+D
Sbjct 10 PEARVLVVDDEPMIVELLSVSLRFQGFEVETAVDGAQALDKARSFRPQAMIVDVMMPGID 69
Query 79 GFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 138
GFG+L RLRADGIDAP LFLTARD +QDK+AGLTLG DDY+TKPFSLEEVVARLRV+LRR
Sbjct 70 GFGLLPRLRADGIDAPVLFLTARDDVQDKVAGLTLGADDYITKPFSLEEVVARLRVVLRR 129
Query 139 AGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKI 198
AG G + R+ F DIELD++THEVWKAG PVSLSPTEFTLLRYF++NAGTVLSKP+I
Sbjct 130 AGHGAPVRESSRIRFEDIELDDDTHEVWKAGVPVSLSPTEFTLLRYFMVNAGTVLSKPRI 189
Query 199 LDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREP 246
LDHVWRYDFGG+V VVE+YVSYLR+K+DTGE+RL+HTLRGVGYV+R P
Sbjct 190 LDHVWRYDFGGEVGVVETYVSYLRKKVDTGERRLIHTLRGVGYVMRAP 237
>gi|262200820|ref|YP_003272028.1| response regulator receiver [Gordonia bronchialis DSM 43247]
gi|262084167|gb|ACY20135.1| response regulator receiver [Gordonia bronchialis DSM 43247]
Length=241
Score = 372 bits (954), Expect = 4e-101, Method: Compositional matrix adjust.
Identities = 181/236 (77%), Positives = 211/236 (90%), Gaps = 2/236 (0%)
Query 14 GENTTPE--ARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILD 71
G+N P A++LVVDDE NI +LLSVSLKFQG+EV TA +G A+DR R +PDA+ILD
Sbjct 5 GKNQNPGQGAKILVVDDEENIRQLLSVSLKFQGYEVETAESGPAAIDRCRTFKPDALILD 64
Query 72 VMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVAR 131
VMMPGMDGFG+LRRLRADGI+APALFL+ARDS++DKI GLT+GGDDYVTKPFSLEEVVAR
Sbjct 65 VMMPGMDGFGLLRRLRADGIEAPALFLSARDSVEDKINGLTIGGDDYVTKPFSLEEVVAR 124
Query 132 LRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGT 191
L+V+LRR+G E + R+TFADIELD+ETHEV+KAG VSLSPTEFTLLRYF++NAGT
Sbjct 125 LQVLLRRSGFDATEKQASRITFADIELDDETHEVFKAGNLVSLSPTEFTLLRYFMVNAGT 184
Query 192 VLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 247
VLSKP+ILDHVW YDFGG+VNVVESYVSYLRRK+DTG+KRL+HTLRGVGYV+REPR
Sbjct 185 VLSKPRILDHVWNYDFGGEVNVVESYVSYLRRKLDTGDKRLIHTLRGVGYVMREPR 240
>gi|325674850|ref|ZP_08154537.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
gi|325554436|gb|EGD24111.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
Length=232
Score = 371 bits (952), Expect = 6e-101, Method: Compositional matrix adjust.
Identities = 178/232 (77%), Positives = 209/232 (91%), Gaps = 1/232 (0%)
Query 16 NTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMP 75
+ TP+ RVL+VDDE ++VELLSVSL+FQGFEV T TNGA+ LD+AR RPDA+ILDVMMP
Sbjct 2 SETPQVRVLIVDDEPSLVELLSVSLRFQGFEVETGTNGAEGLDKARAFRPDALILDVMMP 61
Query 76 GMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVI 135
GMDGFG+LRRLRADG+DAP LFLTARD+++DK+ GLT+G DDYVTKPFSLEEVV RLRVI
Sbjct 62 GMDGFGMLRRLRADGVDAPVLFLTARDAVEDKVTGLTIGADDYVTKPFSLEEVVTRLRVI 121
Query 136 LRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSK 195
LRRAG + + ++ R+TFAD+ELD++T EVWKAG+PVSLSPTEFTLLRYF++NAGTVLSK
Sbjct 122 LRRAGHSD-DKQSARVTFADLELDDDTREVWKAGEPVSLSPTEFTLLRYFMVNAGTVLSK 180
Query 196 PKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 247
P+IL HVW YDFGG+V VVESYVSYLRRKIDT E RL+HTLRGVGYV+REPR
Sbjct 181 PRILAHVWNYDFGGEVGVVESYVSYLRRKIDTTEPRLIHTLRGVGYVMREPR 232
>gi|343925788|ref|ZP_08765303.1| two-component response regulator PhoP [Gordonia alkanivorans
NBRC 16433]
gi|343764139|dbj|GAA12229.1| two-component response regulator PhoP [Gordonia alkanivorans
NBRC 16433]
Length=226
Score = 369 bits (948), Expect = 2e-100, Method: Compositional matrix adjust.
Identities = 175/225 (78%), Positives = 205/225 (92%), Gaps = 0/225 (0%)
Query 23 VLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGFGV 82
+LVVDDE NI ELLSVSLKFQG++V TA +G A+DR R +PD +ILDVMMPGMDGFG+
Sbjct 1 MLVVDDEENIRELLSVSLKFQGYDVETAADGPAAIDRCRSRKPDVLILDVMMPGMDGFGL 60
Query 83 LRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGKG 142
LRRLRADG++APALFL+ARDS++DK+ GLT+GGDDYVTKPFSLEEVVARL+V+LRR+G G
Sbjct 61 LRRLRADGVEAPALFLSARDSVEDKVNGLTIGGDDYVTKPFSLEEVVARLQVLLRRSGFG 120
Query 143 NKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHV 202
E + R+TFADIELD+ETHEV+KAGQPV LSPTEFTLLRYF++NAGTVLSKP+ILDHV
Sbjct 121 EAEQSSSRITFADIELDDETHEVFKAGQPVQLSPTEFTLLRYFMVNAGTVLSKPRILDHV 180
Query 203 WRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 247
W YDFGG+VNVVESYVSYLRRK+D GE+RL+HTLRGVGYV+REPR
Sbjct 181 WNYDFGGEVNVVESYVSYLRRKLDNGERRLIHTLRGVGYVMREPR 225
>gi|312138242|ref|YP_004005578.1| two component system response regulator phop [Rhodococcus equi
103S]
gi|311887581|emb|CBH46893.1| two component system response regulator PhoP [Rhodococcus equi
103S]
Length=224
Score = 364 bits (935), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 175/225 (78%), Positives = 205/225 (92%), Gaps = 1/225 (0%)
Query 23 VLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGFGV 82
+L+VDDE ++VELLSVSL+FQGFEV TA NGA+ LD+AR RPDA+ILDVMMPGMDGFG+
Sbjct 1 MLIVDDEPSLVELLSVSLRFQGFEVETAANGAEGLDKARAFRPDALILDVMMPGMDGFGM 60
Query 83 LRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGKG 142
LRRLRADG+DAP LFLTARD+++DK+ GLT+G DDYVTKPFSLEEVV RLRVILRRAG
Sbjct 61 LRRLRADGVDAPVLFLTARDAVEDKVTGLTIGADDYVTKPFSLEEVVTRLRVILRRAGHS 120
Query 143 NKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHV 202
+ + ++ R+TFAD+ELD++T EVWKAG+PVSLSPTEFTLLRYF++NAGTVLSKP+ILDHV
Sbjct 121 D-DKQSARVTFADLELDDDTREVWKAGEPVSLSPTEFTLLRYFMVNAGTVLSKPRILDHV 179
Query 203 WRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 247
W YDFGG+V VVESYVSYLRRKIDT E RL+HTLRGVGYV+REPR
Sbjct 180 WNYDFGGEVGVVESYVSYLRRKIDTTEPRLIHTLRGVGYVMREPR 224
>gi|296141305|ref|YP_003648548.1| winged helix family two component transcriptional regulator [Tsukamurella
paurometabola DSM 20162]
gi|296029439|gb|ADG80209.1| two component transcriptional regulator, winged helix family
[Tsukamurella paurometabola DSM 20162]
Length=235
Score = 363 bits (931), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 177/228 (78%), Positives = 200/228 (88%), Gaps = 1/228 (0%)
Query 20 EARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDG 79
+ RVLVVDDE +I ELL VSLKFQGF+V A +G ALDR R PD ++LD+MMPGMDG
Sbjct 9 QPRVLVVDDEQSIRELLQVSLKFQGFDVTVAQDGPSALDRVRTFHPDVMVLDIMMPGMDG 68
Query 80 FGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRA 139
G+L+RLR DGIDAPALFLTARDS++DK+AGLTLGGDDYVTKPFSLEEVVAR+ V+LRR+
Sbjct 69 LGLLKRLRQDGIDAPALFLTARDSVEDKVAGLTLGGDDYVTKPFSLEEVVARINVLLRRS 128
Query 140 GKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKIL 199
G G KE RL FAD+ELD+ETHEVWKAG+ VSLSPTEFTLLRYF++NAG VLSKP+IL
Sbjct 129 GFGQKE-EITRLKFADLELDDETHEVWKAGELVSLSPTEFTLLRYFMVNAGVVLSKPRIL 187
Query 200 DHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 247
DHVW YDFGGDVNVVESYVSYLRRK+DTGE RL+HTLRGVGYVLREPR
Sbjct 188 DHVWHYDFGGDVNVVESYVSYLRRKVDTGEPRLIHTLRGVGYVLREPR 235
>gi|326384016|ref|ZP_08205699.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
gi|326197176|gb|EGD54367.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
Length=235
Score = 358 bits (919), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 174/227 (77%), Positives = 202/227 (89%), Gaps = 0/227 (0%)
Query 21 ARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGF 80
A+VLVVDDE NI ELLSVSLKFQG+EV A +G +ALD R +PD ++LDVMMPGMDGF
Sbjct 8 AKVLVVDDEENIRELLSVSLKFQGYEVVAAADGPRALDVVRTFKPDILVLDVMMPGMDGF 67
Query 81 GVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAG 140
G+LRRLRADGIDAPALFL+ARDS++DK+ GLT+GGDDYVTKPFSLEEVVARL V+LRR+G
Sbjct 68 GLLRRLRADGIDAPALFLSARDSVEDKVNGLTIGGDDYVTKPFSLEEVVARLAVLLRRSG 127
Query 141 KGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILD 200
G + R+ F+D+ELD+ETHEV+K G+ VSLSPTEFTLLRYF++NAGTVLSKP+ILD
Sbjct 128 FGVGDEEPTRIVFSDLELDDETHEVFKNGELVSLSPTEFTLLRYFMVNAGTVLSKPRILD 187
Query 201 HVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 247
HVW YDFGGDVNVVESYVSYLRRK+DTG KRL+HTLRGVGYV+REPR
Sbjct 188 HVWSYDFGGDVNVVESYVSYLRRKVDTGPKRLIHTLRGVGYVMREPR 234
>gi|319951282|ref|ZP_08025117.1| DNA-binding response regulator PhoP [Dietzia cinnamea P4]
gi|319435055|gb|EFV90340.1| DNA-binding response regulator PhoP [Dietzia cinnamea P4]
Length=225
Score = 355 bits (912), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 173/225 (77%), Positives = 198/225 (88%), Gaps = 0/225 (0%)
Query 23 VLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGFGV 82
+LVVDDE NIVELLSVSLKFQGFEV TA GA+A+D+AR RPDAVILDVMMP MDGF
Sbjct 1 MLVVDDEENIVELLSVSLKFQGFEVATARTGAEAIDKARTFRPDAVILDVMMPVMDGFDA 60
Query 83 LRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGKG 142
++RLRADG DAP LFLTARD+++D++AGLTLG DDYVTKPFSLEEVVARLR ILRR G
Sbjct 61 VKRLRADGCDAPVLFLTARDAVEDRVAGLTLGADDYVTKPFSLEEVVARLRTILRRTGTL 120
Query 143 NKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHV 202
+ R+ RLTFAD+ELDE++HEV+KAG+PV+LSPTEFTLLRY ++NAGTVLSK +ILDHV
Sbjct 121 SAAERSARLTFADLELDEDSHEVYKAGRPVALSPTEFTLLRYLMLNAGTVLSKARILDHV 180
Query 203 WRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 247
W YDFGGD VVESYVSYLR+KIDT E RL+HT+RGVGYVLREPR
Sbjct 181 WDYDFGGDGGVVESYVSYLRKKIDTAEPRLIHTIRGVGYVLREPR 225
>gi|284993022|ref|YP_003411576.1| winged helix family two component transcriptional regulator [Geodermatophilus
obscurus DSM 43160]
gi|284066267|gb|ADB77205.1| two component transcriptional regulator, winged helix family
[Geodermatophilus obscurus DSM 43160]
Length=240
Score = 325 bits (834), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 159/231 (69%), Positives = 187/231 (81%), Gaps = 0/231 (0%)
Query 17 TTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPG 76
+ PEAR+LVVDDE NI ELLS SL++ GFEV TA +G QAL A RPD ++LDVMMPG
Sbjct 8 SAPEARLLVVDDEPNIRELLSASLRYAGFEVATAADGHQALAMAASFRPDLLVLDVMMPG 67
Query 77 MDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVIL 136
+DGFGV+RRLR G P LFLTARD+ +DK++GLTLGGDDYVTKPFSL+EV+AR+R +L
Sbjct 68 LDGFGVVRRLRESGRHTPVLFLTARDAAEDKVSGLTLGGDDYVTKPFSLDEVLARIRAVL 127
Query 137 RRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKP 196
RR+ + + RL+FADIELDEE+HEV KAG+ VSLSPTEF LLRY + NAG VLSK
Sbjct 128 RRSTGPQRPAESPRLSFADIELDEESHEVVKAGEVVSLSPTEFKLLRYLMANAGRVLSKA 187
Query 197 KILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 247
+ILDHVW YDF GD NVVESY+SYLRRK+DT E RLLHT+RGVGY LR PR
Sbjct 188 QILDHVWNYDFNGDANVVESYISYLRRKVDTTEPRLLHTIRGVGYTLRLPR 238
>gi|317509453|ref|ZP_07967071.1| response regulator receiver domain-containing protein [Segniliparus
rugosus ATCC BAA-974]
gi|316252282|gb|EFV11734.1| response regulator receiver domain-containing protein [Segniliparus
rugosus ATCC BAA-974]
Length=240
Score = 322 bits (825), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 162/240 (68%), Positives = 187/240 (78%), Gaps = 0/240 (0%)
Query 8 VTAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDA 67
+TA + + +L+VDDE NI LL L QGF V A N AL + PDA
Sbjct 1 MTATLASNSGARTSSILIVDDEPNIAYLLRECLLAQGFNVKEAHNPTDALAVVTKEPPDA 60
Query 68 VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE 127
+ILDVM+PGMDG+ +LRR+R G + P LFLTARDSL+DK+ GLT+GGDDYVTKPFSLEE
Sbjct 61 MILDVMLPGMDGYTLLRRVREMGTECPVLFLTARDSLEDKLTGLTIGGDDYVTKPFSLEE 120
Query 128 VVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI 187
VVARLRVILRRAGK + + L F DIEL+EETHEVWKAGQ VSLSPTEFTLLRYF++
Sbjct 121 VVARLRVILRRAGKSDGARESPTLVFEDIELNEETHEVWKAGQLVSLSPTEFTLLRYFMV 180
Query 188 NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 247
NA VLSK +IL+HVW YDFGGD+NVVESYVSYLRRKIDTGEK++L TLRGVGYVLREPR
Sbjct 181 NARIVLSKRQILEHVWHYDFGGDMNVVESYVSYLRRKIDTGEKKMLQTLRGVGYVLREPR 240
>gi|25029050|ref|NP_739104.1| hypothetical protein CE2494 [Corynebacterium efficiens YS-314]
gi|23494337|dbj|BAC19304.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
Length=240
Score = 320 bits (820), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 157/234 (68%), Positives = 190/234 (82%), Gaps = 1/234 (0%)
Query 15 ENTTP-EARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVM 73
EN T + +VLVVDDE NIVELL+VSLKFQGF V TA++G + L ARE RPDA ILDVM
Sbjct 6 ENQTDGQVKVLVVDDEPNIVELLTVSLKFQGFNVMTASDGNEGLKIAREFRPDAYILDVM 65
Query 74 MPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLR 133
MPGMDGF +L +LRA+G+D P L+LTA+D+++++I GLT+G DDYVTKPFSLEEV+ RLR
Sbjct 66 MPGMDGFELLTKLRAEGLDGPVLYLTAKDAVENRIHGLTIGADDYVTKPFSLEEVITRLR 125
Query 134 VILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVL 193
VILRR G E + LT+AD+ L++ETHEV KAG+ V LSPTEF LLRY ++NA VL
Sbjct 126 VILRRGGSVESESNDATLTYADLTLNDETHEVTKAGELVDLSPTEFNLLRYLMLNAEVVL 185
Query 194 SKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 247
SK KILD+VW YDFGGD NVVESY+SYLRRK+DT E +L+ T+RGVGYVLR PR
Sbjct 186 SKAKILDNVWHYDFGGDGNVVESYISYLRRKVDTHEPQLIQTVRGVGYVLRTPR 239
>gi|259505958|ref|ZP_05748860.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
gi|259166439|gb|EEW50993.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
Length=236
Score = 319 bits (818), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 157/234 (68%), Positives = 190/234 (82%), Gaps = 1/234 (0%)
Query 15 ENTTP-EARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVM 73
EN T + +VLVVDDE NIVELL+VSLKFQGF V TA++G + L ARE RPDA ILDVM
Sbjct 2 ENQTDGQVKVLVVDDEPNIVELLTVSLKFQGFNVMTASDGNEGLKIAREFRPDAYILDVM 61
Query 74 MPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLR 133
MPGMDGF +L +LRA+G+D P L+LTA+D+++++I GLT+G DDYVTKPFSLEEV+ RLR
Sbjct 62 MPGMDGFELLTKLRAEGLDGPVLYLTAKDAVENRIHGLTIGADDYVTKPFSLEEVITRLR 121
Query 134 VILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVL 193
VILRR G E + LT+AD+ L++ETHEV KAG+ V LSPTEF LLRY ++NA VL
Sbjct 122 VILRRGGSVESESNDATLTYADLTLNDETHEVTKAGELVDLSPTEFNLLRYLMLNAEVVL 181
Query 194 SKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 247
SK KILD+VW YDFGGD NVVESY+SYLRRK+DT E +L+ T+RGVGYVLR PR
Sbjct 182 SKAKILDNVWHYDFGGDGNVVESYISYLRRKVDTHEPQLIQTVRGVGYVLRTPR 235
>gi|172041315|ref|YP_001801029.1| two-component system response regulator [Corynebacterium urealyticum
DSM 7109]
gi|171852619|emb|CAQ05595.1| two-component system response regulator [Corynebacterium urealyticum
DSM 7109]
Length=256
Score = 318 bits (816), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 163/240 (68%), Positives = 189/240 (79%), Gaps = 7/240 (2%)
Query 14 GEN---TTPEA---RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDA 67
GEN TTP +VLVVDDE NI +L+ VSLKFQGF+V TA NG AL+ A RPDA
Sbjct 17 GENRAMTTPNTQPVKVLVVDDEDNISDLIKVSLKFQGFDVETADNGQTALEIAETYRPDA 76
Query 68 VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE 127
ILDVMMPGMDGF +L +LR G DAPALFLTA+D ++D+I GLT+G DDYVTKPFSLEE
Sbjct 77 FILDVMMPGMDGFTLLNKLREAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEE 136
Query 128 VVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI 187
V+ RLRVILRR K + E ++ +T+ DI LD++ HEV KAG+ V LSPTEF LLRY ++
Sbjct 137 VITRLRVILRRVAKDDSEESSL-ITYEDITLDDDMHEVTKAGEVVDLSPTEFQLLRYLMV 195
Query 188 NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 247
NA VLSK KILDHVW YDFGGD NVVESYVSYLRRKIDT E RL+HT+RGVGYVLR+PR
Sbjct 196 NAEVVLSKSKILDHVWNYDFGGDGNVVESYVSYLRRKIDTKEPRLIHTVRGVGYVLRKPR 255
>gi|296392538|ref|YP_003657422.1| PhoB family transcriptional regulator [Segniliparus rotundus
DSM 44985]
gi|296179685|gb|ADG96591.1| two component transcriptional regulator, winged helix family
[Segniliparus rotundus DSM 44985]
Length=240
Score = 318 bits (815), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 160/240 (67%), Positives = 185/240 (78%), Gaps = 0/240 (0%)
Query 8 VTAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDA 67
+TA + + +L+VDDE NI LL L QGF V A N AL + PDA
Sbjct 1 MTATLASNSAAHTSSILIVDDEPNIAYLLRECLLAQGFSVKEAHNPTDALAVVTKEPPDA 60
Query 68 VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE 127
+ILDVM+PGMDG+ +LRR+R G + P LFLTARDSL+DK+ GLT+GGDDYVTKPFSLEE
Sbjct 61 MILDVMLPGMDGYTLLRRVREMGTECPVLFLTARDSLEDKLTGLTIGGDDYVTKPFSLEE 120
Query 128 VVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI 187
VVARLRVILRRAGK + + L F DIEL+EETHEVWKAG V LSPTEFTLLRYF++
Sbjct 121 VVARLRVILRRAGKSDGARESPTLVFEDIELNEETHEVWKAGVLVPLSPTEFTLLRYFMV 180
Query 188 NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 247
NA VLSK +IL+HVW YDFGGD+NVVESYVSYLRRKIDTGEK++L TLRGVGYVLREPR
Sbjct 181 NARIVLSKRQILEHVWHYDFGGDMNVVESYVSYLRRKIDTGEKKMLQTLRGVGYVLREPR 240
>gi|269124841|ref|YP_003298211.1| winged helix family two component transcriptional regulator [Thermomonospora
curvata DSM 43183]
gi|268309799|gb|ACY96173.1| two component transcriptional regulator, winged helix family
[Thermomonospora curvata DSM 43183]
Length=244
Score = 318 bits (814), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 156/239 (66%), Positives = 188/239 (79%), Gaps = 1/239 (0%)
Query 9 TAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAV 68
TA P AR+LVV+D+ANI ELL+ SL+F GFEV TAT+G A++ A RPD +
Sbjct 5 TAHRPRPQRAAGARLLVVEDDANIRELLAGSLRFAGFEVVTATSGTTAVEAAHRHRPDLI 64
Query 69 ILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEV 128
+LDVM+P DGF V+RRLR+ G P LFLTARD++ D+I GLT+GGDDYVTKPFSLEEV
Sbjct 65 VLDVMLPDFDGFAVVRRLRSGGTHTPVLFLTARDAVGDRITGLTIGGDDYVTKPFSLEEV 124
Query 129 VARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVIN 188
+AR+ ILRRA G EP + R+ FADIELDE++HEVW+AG+P+SLSPTEF LLRYF+ N
Sbjct 125 IARIHAILRRARGGAAEP-SPRMVFADIELDEDSHEVWRAGKPISLSPTEFKLLRYFMAN 183
Query 189 AGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 247
AG VLSK +ILDHVW YDF GD +VESYVS LRRK+D E RL+HTLRGVGYVLR+PR
Sbjct 184 AGRVLSKAQILDHVWNYDFRGDAGIVESYVSALRRKVDNTEPRLIHTLRGVGYVLRQPR 242
>gi|300780471|ref|ZP_07090327.1| response regulator [Corynebacterium genitalium ATCC 33030]
gi|300534581|gb|EFK55640.1| response regulator [Corynebacterium genitalium ATCC 33030]
Length=239
Score = 317 bits (811), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 157/238 (66%), Positives = 192/238 (81%), Gaps = 3/238 (1%)
Query 10 AGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVI 69
A TP T +VLVVDDE NIVELL+VSLKFQGFEV +A +G QAL+ ARE +P+A I
Sbjct 2 ADTP---TPQNVKVLVVDDEPNIVELLTVSLKFQGFEVESAESGQQALEMARELKPEAYI 58
Query 70 LDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVV 129
LDVMMPGMDGF +L +LRA+G+DAP LFLTA+D+++D+I GLT+G DDYVTKPFSLEEV+
Sbjct 59 LDVMMPGMDGFELLGKLRAEGLDAPVLFLTAKDAVEDRIHGLTIGADDYVTKPFSLEEVI 118
Query 130 ARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINA 189
RLRVILRR E + + +AD+ L+++THEV KAG+ V LSPTEF LLRY ++NA
Sbjct 119 TRLRVILRRGNVTETETGDSTIRYADLTLNDDTHEVTKAGEIVELSPTEFNLLRYLMLNA 178
Query 190 GTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 247
VLSK KILD+VW YDFGGD NVVESY+SYLRRK+D GE +L++T+RGVGYVLR PR
Sbjct 179 EVVLSKAKILDNVWHYDFGGDGNVVESYISYLRRKVDQGEPQLINTVRGVGYVLRTPR 236
>gi|311740194|ref|ZP_07714026.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
gi|311304749|gb|EFQ80820.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
Length=234
Score = 315 bits (807), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 151/230 (66%), Positives = 184/230 (80%), Gaps = 0/230 (0%)
Query 18 TPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGM 77
T A+VLVVDDE NIVELL+VSLKFQ FEVY+A +G +AL ARE PDA ILDVMMPGM
Sbjct 4 TKLAKVLVVDDEPNIVELLTVSLKFQNFEVYSANSGNEALRIAREVNPDAYILDVMMPGM 63
Query 78 DGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILR 137
DGF +L +LR +G+D P L+LTA+D + +I GLT+G DDYVTKPFSLEEV+ RLRVI+R
Sbjct 64 DGFELLGKLRQEGLDGPVLYLTAKDGVDQRIHGLTIGADDYVTKPFSLEEVITRLRVIMR 123
Query 138 RAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPK 197
R G + + +++AD+ L+++THEV KAG+ + LSPTEF LLRY + N VLSK K
Sbjct 124 RGGAAEESTNDATMSYADLTLNDDTHEVTKAGELIELSPTEFNLLRYLMQNKEVVLSKSK 183
Query 198 ILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 247
ILD+VW YDFGGD NVVESY+SYLRRKIDTGE +L+HT+RGVGYVLR PR
Sbjct 184 ILDNVWHYDFGGDGNVVESYISYLRRKIDTGETQLIHTVRGVGYVLRTPR 233
>gi|271970059|ref|YP_003344255.1| response regulator receiver protein [Streptosporangium roseum
DSM 43021]
gi|270513234|gb|ACZ91512.1| response regulator receiver protein [Streptosporangium roseum
DSM 43021]
Length=235
Score = 315 bits (806), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 155/229 (68%), Positives = 183/229 (80%), Gaps = 0/229 (0%)
Query 18 TPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGM 77
+PEAR+L+V+DE NI+ELL+ SL+F GF V TA NG A+ + RPD ++LDVM+P M
Sbjct 4 SPEARLLIVEDEPNILELLAASLRFAGFGVNTAGNGTDAVAAVQRHRPDLIVLDVMLPDM 63
Query 78 DGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILR 137
DGF V+RRLR G D P +FLTARD+ +DKI GLT GGDDYVTKPFSLEEVVAR+R +LR
Sbjct 64 DGFDVVRRLRGGGTDTPVVFLTARDATEDKIRGLTAGGDDYVTKPFSLEEVVARIRAVLR 123
Query 138 RAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPK 197
R G G+ R RLTFADIELDEE+HEVW+ G+ V+LSPTEF LLRYF+ NAG VLSK +
Sbjct 124 RTGAGDLPARPPRLTFADIELDEESHEVWRRGRAVALSPTEFKLLRYFMANAGRVLSKAQ 183
Query 198 ILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREP 246
ILDHVW YDF GDV +VESYVS LRRKID + RL+HTLRGVGYVLR P
Sbjct 184 ILDHVWDYDFRGDVGIVESYVSVLRRKIDNADPRLIHTLRGVGYVLRLP 232
>gi|255325893|ref|ZP_05366985.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Corynebacterium tuberculostearicum SK141]
gi|255297105|gb|EET76430.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Corynebacterium tuberculostearicum SK141]
Length=234
Score = 314 bits (805), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 151/230 (66%), Positives = 184/230 (80%), Gaps = 0/230 (0%)
Query 18 TPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGM 77
T A+VLVVDDE NIVELL+VSLKFQ FEVY+A +G +AL ARE PDA ILDVMMPGM
Sbjct 4 TKLAKVLVVDDEPNIVELLTVSLKFQDFEVYSANSGNEALRIAREVNPDAYILDVMMPGM 63
Query 78 DGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILR 137
DGF +L +LR +G+D P L+LTA+D + +I GLT+G DDYVTKPFSLEEV+ RLRVI+R
Sbjct 64 DGFELLGKLRQEGLDGPVLYLTAKDGVDQRIHGLTIGADDYVTKPFSLEEVITRLRVIMR 123
Query 138 RAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPK 197
R G + + +++AD+ L+++THEV KAG+ + LSPTEF LLRY + N VLSK K
Sbjct 124 RGGAAEESTNDATMSYADLTLNDDTHEVTKAGELIELSPTEFNLLRYLMQNKEVVLSKSK 183
Query 198 ILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 247
ILD+VW YDFGGD NVVESY+SYLRRKIDTGE +L+HT+RGVGYVLR PR
Sbjct 184 ILDNVWHYDFGGDGNVVESYISYLRRKIDTGETQLIHTVRGVGYVLRTPR 233
>gi|330469914|ref|YP_004407657.1| winged helix family two component transcriptional regulator [Verrucosispora
maris AB-18-032]
gi|328812885|gb|AEB47057.1| two component transcriptional regulator, winged helix family
protein [Verrucosispora maris AB-18-032]
Length=236
Score = 314 bits (804), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 153/230 (67%), Positives = 185/230 (81%), Gaps = 2/230 (0%)
Query 17 TTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPG 76
T EAR+LVV+D+ NI+ELLS SL+F GF+V TAT+G+ AL+ AR+ RPD V+LDVM+P
Sbjct 7 TQTEARLLVVEDDPNILELLSASLRFAGFDVATATSGSAALNAARDHRPDLVVLDVMLPD 66
Query 77 MDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVIL 136
+DGF V+R +R G P +FLTARD+ DKI GLTLGGDDYVTKPFSLEE+ AR+R +L
Sbjct 67 LDGFEVIRMMREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVL 126
Query 137 RRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKP 196
RR G + P RLTFAD+ELDEETHEV++AGQ V LSPTEF LLRY ++NA VLSK
Sbjct 127 RRTSTGEQAP--ARLTFADLELDEETHEVYRAGQRVQLSPTEFKLLRYLMLNANRVLSKA 184
Query 197 KILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREP 246
+ILDHVW YDF GD N+VESY+SYLRRK+D E RL+HTLRGVGYVLR+P
Sbjct 185 QILDHVWNYDFRGDDNIVESYISYLRRKVDNVEPRLIHTLRGVGYVLRKP 234
>gi|237784979|ref|YP_002905684.1| two-component system response regulator [Corynebacterium kroppenstedtii
DSM 44385]
gi|237757891|gb|ACR17141.1| two-component system, response regulator [Corynebacterium kroppenstedtii
DSM 44385]
Length=234
Score = 313 bits (803), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 158/226 (70%), Positives = 182/226 (81%), Gaps = 1/226 (0%)
Query 22 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGFG 81
RVLVVDDEANIVELL VSLKFQGFEV TA++G +ALD AR PDA ILDVMMP MDGF
Sbjct 9 RVLVVDDEANIVELLKVSLKFQGFEVATASDGGEALDIARSFHPDAFILDVMMPRMDGFT 68
Query 82 VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 141
+L +LRADG DAP LFLTA+D++ D+I GLT+G DDYVTKPFSLEEVV RL+VILRR
Sbjct 69 LLSKLRADGHDAPVLFLTAKDAVDDRIHGLTIGADDYVTKPFSLEEVVTRLKVILRRVSP 128
Query 142 GNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 201
+ + R+T+AD+ LD+ +HEV KAG+ V LSPTEF LLRY ++NA VLSK KILDH
Sbjct 129 PEVDD-DQRITYADLTLDDNSHEVTKAGEYVDLSPTEFKLLRYLMVNAEVVLSKAKILDH 187
Query 202 VWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 247
VW YDFGGD NVVESYVSYLRRK+D E L+ T+RGVGYVLR PR
Sbjct 188 VWNYDFGGDGNVVESYVSYLRRKVDKDEPHLIQTVRGVGYVLRTPR 233
>gi|336324700|ref|YP_004604666.1| two-component system response regulator [Corynebacterium resistens
DSM 45100]
gi|336100682|gb|AEI08502.1| two-component system response regulator [Corynebacterium resistens
DSM 45100]
Length=235
Score = 313 bits (803), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 155/227 (69%), Positives = 184/227 (82%), Gaps = 1/227 (0%)
Query 21 ARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGF 80
+VLVVDDEANI +LL VSLKFQGF+V TA +G ALD E +PDA ILDVMMPGMDGF
Sbjct 9 TKVLVVDDEANISDLLKVSLKFQGFDVETADSGQAALDIVDEYQPDAFILDVMMPGMDGF 68
Query 81 GVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAG 140
+L +LRA G DAP LFLTA+D ++D+I GLT+G DDYVTKPFSLEEV+ RLRVILRR
Sbjct 69 SLLNKLRAKGHDAPVLFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVS 128
Query 141 KGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILD 200
+++ NV +++ D+ LD++ HEV KAG+ V LSPTEF LLRY ++NA VLSK KILD
Sbjct 129 PEDEKESNV-ISYEDLTLDDDMHEVTKAGKVVDLSPTEFKLLRYLMVNAEVVLSKAKILD 187
Query 201 HVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 247
HVW YDFGGD NVVESYVSYLRRKIDT + RL+HT+RGVGYVLR+PR
Sbjct 188 HVWNYDFGGDGNVVESYVSYLRRKIDTDDPRLIHTVRGVGYVLRKPR 234
>gi|238060857|ref|ZP_04605566.1| winged helix family two-component system transcriptional regulator
[Micromonospora sp. ATCC 39149]
gi|237882668|gb|EEP71496.1| winged helix family two-component system transcriptional regulator
[Micromonospora sp. ATCC 39149]
Length=233
Score = 312 bits (800), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 152/230 (67%), Positives = 185/230 (81%), Gaps = 2/230 (0%)
Query 17 TTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPG 76
T EAR+LVV+D+ NI+ELLS SL+F GF+V TAT+G+ AL+ A++ RPD V+LDVM+P
Sbjct 4 TQTEARLLVVEDDPNILELLSASLRFAGFDVATATSGSAALNAAKDHRPDLVVLDVMLPD 63
Query 77 MDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVIL 136
+DGF V+R LR G P +FLTARD+ DKI GLTLGGDDYVTKPFSLEE+ AR+R +L
Sbjct 64 LDGFEVIRMLREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVL 123
Query 137 RRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKP 196
RR G++ P RLTFAD+ELDEETHEV +AGQ V LSPTEF LLRY ++NA VLSK
Sbjct 124 RRTANGDQAPS--RLTFADLELDEETHEVHRAGQRVQLSPTEFKLLRYLMLNANRVLSKA 181
Query 197 KILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREP 246
+ILDHVW YDF GD N+VESY+SYLRRK+D + RL+HTLRGVGYVLR+P
Sbjct 182 QILDHVWNYDFRGDDNIVESYISYLRRKVDNTQPRLIHTLRGVGYVLRKP 231
>gi|145296603|ref|YP_001139424.1| hypothetical protein cgR_2511 [Corynebacterium glutamicum R]
gi|140846523|dbj|BAF55522.1| hypothetical protein [Corynebacterium glutamicum R]
Length=240
Score = 312 bits (800), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 153/228 (68%), Positives = 187/228 (83%), Gaps = 1/228 (0%)
Query 20 EARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDG 79
+ RVLVVDDE NIVELL+VSLKFQGF V TA +G +AL ARE RPDA ILDVMMPGMDG
Sbjct 13 QIRVLVVDDEPNIVELLTVSLKFQGFAVMTANDGNEALKIAREFRPDAYILDVMMPGMDG 72
Query 80 FGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRA 139
F +L +LR++G+D+P L+LTA+D+++ +I GLT+G DDYVTKPFSLEEV+ RLRVILRR
Sbjct 73 FELLTKLRSEGLDSPVLYLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRRG 132
Query 140 GKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKIL 199
G +E + L +AD+ L++ETHEV KAG+ + LSPTEF LLRY ++NA VLSK KIL
Sbjct 133 G-AVEEDTSTSLQYADLTLNDETHEVTKAGELIDLSPTEFNLLRYLMLNAEVVLSKAKIL 191
Query 200 DHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 247
D+VW YDFGGD NVVESY+SYLRRK+DT E +L+ T+RGVGYVLR PR
Sbjct 192 DNVWHYDFGGDGNVVESYISYLRRKVDTQEPQLIQTVRGVGYVLRTPR 239
>gi|227502103|ref|ZP_03932152.1| response regulator [Corynebacterium accolens ATCC 49725]
gi|306836868|ref|ZP_07469824.1| response regulator [Corynebacterium accolens ATCC 49726]
gi|227077162|gb|EEI15125.1| response regulator [Corynebacterium accolens ATCC 49725]
gi|304567240|gb|EFM42849.1| response regulator [Corynebacterium accolens ATCC 49726]
Length=234
Score = 312 bits (799), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 148/227 (66%), Positives = 182/227 (81%), Gaps = 0/227 (0%)
Query 21 ARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGF 80
A+VLVVDDE NIVELL+VSLKFQ FEVY+A +G +AL ARE PDA ILDVMMPGMDGF
Sbjct 7 AKVLVVDDEPNIVELLTVSLKFQNFEVYSANSGNEALRVAREVNPDAYILDVMMPGMDGF 66
Query 81 GVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAG 140
+L +LR +G+D P L+LTA+D + +I GLT+G DDYVTKPFSLEEV+ RLRVI+RR G
Sbjct 67 ELLGKLRQEGLDGPVLYLTAKDGVDQRIHGLTIGADDYVTKPFSLEEVITRLRVIMRRGG 126
Query 141 KGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILD 200
+ + +++AD+ L+++THEV K G+ + LSPTEF LLRY + N VLSK KILD
Sbjct 127 AAEESSNDATMSYADLTLNDDTHEVTKGGELIELSPTEFNLLRYLMQNKEVVLSKSKILD 186
Query 201 HVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR 247
+VW YDFGGD NVVESY+SYLRRKIDTG+ +L+HT+RGVGYVLR PR
Sbjct 187 NVWHYDFGGDGNVVESYISYLRRKIDTGDTQLIHTVRGVGYVLRTPR 233
Lambda K H
0.320 0.139 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 349499277540
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40