BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0757

Length=247
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15607897|ref|NP_215271.1|  two component system response trans...   496    2e-138
gi|148660534|ref|YP_001282057.1|  putative two component system r...   493    1e-137
gi|339961330|pdb|3R0J|A  Chain A, Structure Of Phop From Mycobact...   484    4e-135
gi|15840172|ref|NP_335209.1|  DNA-binding response regulator [Myc...   481    5e-134
gi|167968859|ref|ZP_02551136.1|  putative two component system re...   478    4e-133
gi|183984910|ref|YP_001853201.1|  two-component system response p...   463    9e-129
gi|118616306|ref|YP_904638.1|  two component system response phos...   462    2e-128
gi|240171667|ref|ZP_04750326.1|  two-component system response ph...   459    2e-127
gi|296166498|ref|ZP_06848929.1|  DNA-binding response regulator [...   458    3e-127
gi|342862203|ref|ZP_08718845.1|  DNA-binding response regulator P...   454    4e-126
gi|118466812|ref|YP_879977.1|  DNA-binding response regulator Pho...   452    2e-125
gi|254818466|ref|ZP_05223467.1|  DNA-binding response regulator P...   452    3e-125
gi|41406689|ref|NP_959525.1|  PhoP [Mycobacterium avium subsp. pa...   450    9e-125
gi|339297419|gb|AEJ49529.1|  DNA-binding response regulator [Myco...   447    5e-124
gi|333992254|ref|YP_004524868.1|  two-component system response p...   440    8e-122
gi|118471457|ref|YP_890099.1|  DNA-binding response regulator Pho...   435    3e-120
gi|108801553|ref|YP_641750.1|  two component transcriptional regu...   433    1e-119
gi|120406123|ref|YP_955952.1|  two component transcriptional regu...   433    1e-119
gi|145222173|ref|YP_001132851.1|  two component transcriptional r...   427    5e-118
gi|169627776|ref|YP_001701425.1|  putative DNA-binding response r...   413    1e-113
gi|37813698|gb|AAR04621.1|  PhoP [Rhodococcus equi]                    374    7e-102
gi|226304476|ref|YP_002764434.1|  two-component response regulato...   374    8e-102
gi|229494339|ref|ZP_04388102.1|  transcriptional regulatory prote...   373    1e-101
gi|226364243|ref|YP_002782025.1|  two-component response regulato...   372    2e-101
gi|111021712|ref|YP_704684.1|  response regulator, two-component ...   372    3e-101
gi|54022513|ref|YP_116755.1|  putative two-component system respo...   372    3e-101
gi|262200820|ref|YP_003272028.1|  response regulator receiver [Go...   372    4e-101
gi|325674850|ref|ZP_08154537.1|  DNA-binding response regulator [...   371    6e-101
gi|343925788|ref|ZP_08765303.1|  two-component response regulator...   369    2e-100
gi|312138242|ref|YP_004005578.1|  two component system response r...   364    5e-99 
gi|296141305|ref|YP_003648548.1|  winged helix family two compone...   363    2e-98 
gi|326384016|ref|ZP_08205699.1|  response regulator receiver [Gor...   358    4e-97 
gi|319951282|ref|ZP_08025117.1|  DNA-binding response regulator P...   355    3e-96 
gi|284993022|ref|YP_003411576.1|  winged helix family two compone...   325    3e-87 
gi|317509453|ref|ZP_07967071.1|  response regulator receiver doma...   322    3e-86 
gi|25029050|ref|NP_739104.1|  hypothetical protein CE2494 [Coryne...   320    1e-85 
gi|259505958|ref|ZP_05748860.1|  DNA-binding response regulator [...   319    2e-85 
gi|172041315|ref|YP_001801029.1|  two-component system response r...   318    4e-85 
gi|296392538|ref|YP_003657422.1|  PhoB family transcriptional reg...   318    5e-85 
gi|269124841|ref|YP_003298211.1|  winged helix family two compone...   318    7e-85 
gi|300780471|ref|ZP_07090327.1|  response regulator [Corynebacter...   317    1e-84 
gi|311740194|ref|ZP_07714026.1|  response regulator [Corynebacter...   315    4e-84 
gi|271970059|ref|YP_003344255.1|  response regulator receiver pro...   315    4e-84 
gi|255325893|ref|ZP_05366985.1|  alkaline phosphatase synthesis t...   314    6e-84 
gi|330469914|ref|YP_004407657.1|  winged helix family two compone...   314    1e-83 
gi|237784979|ref|YP_002905684.1|  two-component system response r...   313    1e-83 
gi|336324700|ref|YP_004604666.1|  two-component system response r...   313    1e-83 
gi|238060857|ref|ZP_04605566.1|  winged helix family two-componen...   312    2e-83 
gi|145296603|ref|YP_001139424.1|  hypothetical protein cgR_2511 [...   312    2e-83 
gi|227502103|ref|ZP_03932152.1|  response regulator [Corynebacter...   312    3e-83 


>gi|15607897|ref|NP_215271.1| two component system response transcriptional positive regulator 
PHOP [Mycobacterium tuberculosis H37Rv]
 gi|31791945|ref|NP_854438.1| two component system response transcriptional positive regulator 
PHOP [Mycobacterium bovis AF2122/97]
 gi|121636681|ref|YP_976904.1| putative two component system response transcriptional positive 
regulator phoP [Mycobacterium bovis BCG str. Pasteur 1173P2]
 68 more sequence titles
 Length=247

 Score =  496 bits (1276),  Expect = 2e-138, Method: Compositional matrix adjust.
 Identities = 247/247 (100%), Positives = 247/247 (100%), Gaps = 0/247 (0%)

Query  1    MRKGVDLVTAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRA  60
            MRKGVDLVTAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRA
Sbjct  1    MRKGVDLVTAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRA  60

Query  61   RETRPDAVILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVT  120
            RETRPDAVILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVT
Sbjct  61   RETRPDAVILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVT  120

Query  121  KPFSLEEVVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFT  180
            KPFSLEEVVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFT
Sbjct  121  KPFSLEEVVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFT  180

Query  181  LLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVG  240
            LLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVG
Sbjct  181  LLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVG  240

Query  241  YVLREPR  247
            YVLREPR
Sbjct  241  YVLREPR  247


>gi|148660534|ref|YP_001282057.1| putative two component system response transcriptional positive 
regulator PhoP [Mycobacterium tuberculosis H37Ra]
 gi|148504686|gb|ABQ72495.1| putative two component system response transcriptional positive 
regulator PhoP [Mycobacterium tuberculosis H37Ra]
Length=247

 Score =  493 bits (1268),  Expect = 1e-137, Method: Compositional matrix adjust.
 Identities = 246/247 (99%), Positives = 246/247 (99%), Gaps = 0/247 (0%)

Query  1    MRKGVDLVTAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRA  60
            MRKGVDLVTAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRA
Sbjct  1    MRKGVDLVTAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRA  60

Query  61   RETRPDAVILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVT  120
            RETRPDAVILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVT
Sbjct  61   RETRPDAVILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVT  120

Query  121  KPFSLEEVVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFT  180
            KPFSLEEVVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFT
Sbjct  121  KPFSLEEVVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFT  180

Query  181  LLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVG  240
            LLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYV YLRRKIDTGEKRLLHTLRGVG
Sbjct  181  LLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVLYLRRKIDTGEKRLLHTLRGVG  240

Query  241  YVLREPR  247
            YVLREPR
Sbjct  241  YVLREPR  247


>gi|339961330|pdb|3R0J|A Chain A, Structure Of Phop From Mycobacterium Tuberculosis
 gi|339961331|pdb|3R0J|B Chain B, Structure Of Phop From Mycobacterium Tuberculosis
Length=250

 Score =  484 bits (1247),  Expect = 4e-135, Method: Compositional matrix adjust.
 Identities = 243/246 (99%), Positives = 243/246 (99%), Gaps = 0/246 (0%)

Query  2    RKGVDLVTAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRAR  61
            RKGVDLVTAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRAR
Sbjct  5    RKGVDLVTAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRAR  64

Query  62   ETRPDAVILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTK  121
            ETRPDAVILDV  PG DGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTK
Sbjct  65   ETRPDAVILDVXXPGXDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTK  124

Query  122  PFSLEEVVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTL  181
            PFSLEEVVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTL
Sbjct  125  PFSLEEVVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTL  184

Query  182  LRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGY  241
            LRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGY
Sbjct  185  LRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGY  244

Query  242  VLREPR  247
            VLREPR
Sbjct  245  VLREPR  250


>gi|15840172|ref|NP_335209.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
 gi|306966786|ref|ZP_07479447.1| two component system transcriptional regulator phoP [Mycobacterium 
tuberculosis SUMu009]
 gi|308379861|ref|ZP_07487881.2| two component system transcriptional regulator phoP [Mycobacterium 
tuberculosis SUMu011]
 gi|13880325|gb|AAK45023.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
 gi|308355483|gb|EFP44334.1| two component system transcriptional regulator phoP [Mycobacterium 
tuberculosis SUMu009]
 gi|308363343|gb|EFP52194.1| two component system transcriptional regulator phoP [Mycobacterium 
tuberculosis SUMu011]
Length=240

 Score =  481 bits (1237),  Expect = 5e-134, Method: Compositional matrix adjust.
 Identities = 239/240 (99%), Positives = 240/240 (100%), Gaps = 0/240 (0%)

Query  8    VTAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDA  67
            +TAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDA
Sbjct  1    MTAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDA  60

Query  68   VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE  127
            VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE
Sbjct  61   VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE  120

Query  128  VVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI  187
            VVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI
Sbjct  121  VVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI  180

Query  188  NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  247
            NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR
Sbjct  181  NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  240


>gi|167968859|ref|ZP_02551136.1| putative two component system response transcriptional positive 
regulator PhoP [Mycobacterium tuberculosis H37Ra]
 gi|308397079|ref|ZP_07492385.2| two component system transcriptional regulator phoP [Mycobacterium 
tuberculosis SUMu012]
 gi|308367020|gb|EFP55871.1| two component system transcriptional regulator phoP [Mycobacterium 
tuberculosis SUMu012]
Length=240

 Score =  478 bits (1229),  Expect = 4e-133, Method: Compositional matrix adjust.
 Identities = 238/240 (99%), Positives = 239/240 (99%), Gaps = 0/240 (0%)

Query  8    VTAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDA  67
            +TAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDA
Sbjct  1    MTAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDA  60

Query  68   VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE  127
            VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE
Sbjct  61   VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE  120

Query  128  VVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI  187
            VVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI
Sbjct  121  VVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI  180

Query  188  NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  247
            NAGTVLSKPKILDHVWRYDFGGDVNVVESYV YLRRKIDTGEKRLLHTLRGVGYVLREPR
Sbjct  181  NAGTVLSKPKILDHVWRYDFGGDVNVVESYVLYLRRKIDTGEKRLLHTLRGVGYVLREPR  240


>gi|183984910|ref|YP_001853201.1| two-component system response phosphate regulon transcriptional 
regulator, PhoP [Mycobacterium marinum M]
 gi|183178236|gb|ACC43346.1| two-component system response phosphate regulon transcriptional 
regulator, PhoP [Mycobacterium marinum M]
Length=240

 Score =  463 bits (1192),  Expect = 9e-129, Method: Compositional matrix adjust.
 Identities = 230/240 (96%), Positives = 235/240 (98%), Gaps = 0/240 (0%)

Query  8    VTAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDA  67
            +TA TPGE TTPEAR+LVVDDE NIVELLSVSLKFQGFEV+TATNGAQALDRARETRPDA
Sbjct  1    MTATTPGEATTPEARILVVDDEDNIVELLSVSLKFQGFEVHTATNGAQALDRARETRPDA  60

Query  68   VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE  127
            VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE
Sbjct  61   VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE  120

Query  128  VVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI  187
            VVARLRVILRRAGKG+ EPRN RLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI
Sbjct  121  VVARLRVILRRAGKGSAEPRNSRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI  180

Query  188  NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  247
            NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTG+KRLLHTLRGVGYVLREPR
Sbjct  181  NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGDKRLLHTLRGVGYVLREPR  240


>gi|118616306|ref|YP_904638.1| two component system response phosphate regulon transcriptional 
regulator, PhoP [Mycobacterium ulcerans Agy99]
 gi|118568416|gb|ABL03167.1| two component system response phosphate regulon transcriptional 
regulator, PhoP [Mycobacterium ulcerans Agy99]
Length=240

 Score =  462 bits (1188),  Expect = 2e-128, Method: Compositional matrix adjust.
 Identities = 229/240 (96%), Positives = 235/240 (98%), Gaps = 0/240 (0%)

Query  8    VTAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDA  67
            +TA TPGE TTPEAR+LVVDDE NIVELLSVSLKFQGFEV+TATNGAQALDRARETRPDA
Sbjct  1    MTATTPGEATTPEARILVVDDEDNIVELLSVSLKFQGFEVHTATNGAQALDRARETRPDA  60

Query  68   VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE  127
            VILDVMMPGMDGFGVLRRL+ADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE
Sbjct  61   VILDVMMPGMDGFGVLRRLQADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE  120

Query  128  VVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI  187
            VVARLRVILRRAGKG+ EPRN RLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI
Sbjct  121  VVARLRVILRRAGKGSAEPRNSRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI  180

Query  188  NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  247
            NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTG+KRLLHTLRGVGYVLREPR
Sbjct  181  NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGDKRLLHTLRGVGYVLREPR  240


>gi|240171667|ref|ZP_04750326.1| two-component system response phosphate regulon transcriptional 
regulator, PhoP [Mycobacterium kansasii ATCC 12478]
Length=240

 Score =  459 bits (1180),  Expect = 2e-127, Method: Compositional matrix adjust.
 Identities = 227/240 (95%), Positives = 233/240 (98%), Gaps = 0/240 (0%)

Query  8    VTAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDA  67
            +TA  PGE  TPEAR+LVVDDEANIVELLSVSLKFQGFEV+TA+NGAQALDRARE RPDA
Sbjct  1    MTAVNPGEAGTPEARILVVDDEANIVELLSVSLKFQGFEVHTASNGAQALDRAREARPDA  60

Query  68   VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE  127
            VILDVMMPGMDGFGVLRRLRADG+DAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE
Sbjct  61   VILDVMMPGMDGFGVLRRLRADGVDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE  120

Query  128  VVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI  187
            VVARLRVILRRAGKG+ EPRN RLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI
Sbjct  121  VVARLRVILRRAGKGSAEPRNSRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI  180

Query  188  NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  247
            NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR
Sbjct  181  NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  240


>gi|296166498|ref|ZP_06848929.1| DNA-binding response regulator [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295898110|gb|EFG77685.1| DNA-binding response regulator [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=239

 Score =  458 bits (1178),  Expect = 3e-127, Method: Compositional matrix adjust.
 Identities = 230/240 (96%), Positives = 232/240 (97%), Gaps = 1/240 (0%)

Query  8    VTAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDA  67
            +TA TP E T PEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARE RPDA
Sbjct  1    MTAATPNE-TKPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRAREARPDA  59

Query  68   VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE  127
            VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE
Sbjct  60   VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE  119

Query  128  VVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI  187
            VVARLRVILRRAGKG  EPR+ RLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI
Sbjct  120  VVARLRVILRRAGKGGAEPRSARLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI  179

Query  188  NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  247
            NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR
Sbjct  180  NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  239


>gi|342862203|ref|ZP_08718845.1| DNA-binding response regulator PhoP [Mycobacterium colombiense 
CECT 3035]
 gi|342130281|gb|EGT83601.1| DNA-binding response regulator PhoP [Mycobacterium colombiense 
CECT 3035]
Length=239

 Score =  454 bits (1169),  Expect = 4e-126, Method: Compositional matrix adjust.
 Identities = 227/240 (95%), Positives = 232/240 (97%), Gaps = 1/240 (0%)

Query  8    VTAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDA  67
            +T+ TP  +T PEAR+LVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARE RPDA
Sbjct  1    MTSTTP-SDTKPEARILVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRAREARPDA  59

Query  68   VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE  127
            VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE
Sbjct  60   VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE  119

Query  128  VVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI  187
            VVARLRVILRRAGKG  EPR+ RLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI
Sbjct  120  VVARLRVILRRAGKGGAEPRSARLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI  179

Query  188  NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  247
            NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR
Sbjct  180  NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  239


>gi|118466812|ref|YP_879977.1| DNA-binding response regulator PhoP [Mycobacterium avium 104]
 gi|254773640|ref|ZP_05215156.1| DNA-binding response regulator PhoP [Mycobacterium avium subsp. 
avium ATCC 25291]
 gi|118168099|gb|ABK68996.1| DNA-binding response regulator PhoP [Mycobacterium avium 104]
 gi|336458353|gb|EGO37331.1| response regulator with CheY-like receiver domain and winged-helix 
DNA-binding domain [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=239

 Score =  452 bits (1162),  Expect = 2e-125, Method: Compositional matrix adjust.
 Identities = 226/240 (95%), Positives = 231/240 (97%), Gaps = 1/240 (0%)

Query  8    VTAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDA  67
            +T+ TP  +  PEARVLVVDDEANIVELLSVSLKFQGFEV+TATNGAQALDRARE RPDA
Sbjct  1    MTSATP-TDAKPEARVLVVDDEANIVELLSVSLKFQGFEVHTATNGAQALDRAREARPDA  59

Query  68   VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE  127
            VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE
Sbjct  60   VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE  119

Query  128  VVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI  187
            VVARLRVILRRAGKG  EPR+ RLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI
Sbjct  120  VVARLRVILRRAGKGGAEPRSARLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI  179

Query  188  NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  247
            NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR
Sbjct  180  NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  239


>gi|254818466|ref|ZP_05223467.1| DNA-binding response regulator PhoP [Mycobacterium intracellulare 
ATCC 13950]
Length=239

 Score =  452 bits (1162),  Expect = 3e-125, Method: Compositional matrix adjust.
 Identities = 227/240 (95%), Positives = 231/240 (97%), Gaps = 1/240 (0%)

Query  8    VTAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDA  67
            +T+ TP  +T PEARVLVVDDEANIVELLSVSLKFQGFEV TATNGAQALDRARE RPDA
Sbjct  1    MTSPTP-SDTKPEARVLVVDDEANIVELLSVSLKFQGFEVCTATNGAQALDRAREARPDA  59

Query  68   VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE  127
            VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE
Sbjct  60   VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE  119

Query  128  VVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI  187
            VVARLRVILRRAGKG  EPR+ RLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI
Sbjct  120  VVARLRVILRRAGKGGAEPRSARLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI  179

Query  188  NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  247
            NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR
Sbjct  180  NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  239


>gi|41406689|ref|NP_959525.1| PhoP [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41395039|gb|AAS02908.1| PhoP [Mycobacterium avium subsp. paratuberculosis K-10]
Length=239

 Score =  450 bits (1158),  Expect = 9e-125, Method: Compositional matrix adjust.
 Identities = 225/240 (94%), Positives = 230/240 (96%), Gaps = 1/240 (0%)

Query  8    VTAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDA  67
            +T+ TP  +  PEARVLVVDDEANIVELLSVSLKFQGFEV+TATNGAQALDRARE RPDA
Sbjct  1    MTSATP-TDAKPEARVLVVDDEANIVELLSVSLKFQGFEVHTATNGAQALDRAREARPDA  59

Query  68   VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE  127
            VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE
Sbjct  60   VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE  119

Query  128  VVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI  187
            VVARLRVILRRAGKG  EPR+ RLTFADIELDEETHEVWKAGQPVSLSP EFTLLRYFVI
Sbjct  120  VVARLRVILRRAGKGGAEPRSARLTFADIELDEETHEVWKAGQPVSLSPNEFTLLRYFVI  179

Query  188  NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  247
            NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR
Sbjct  180  NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  239


>gi|339297419|gb|AEJ49529.1| DNA-binding response regulator [Mycobacterium tuberculosis CCDC5180]
Length=223

 Score =  447 bits (1151),  Expect = 5e-124, Method: Compositional matrix adjust.
 Identities = 222/223 (99%), Positives = 223/223 (100%), Gaps = 0/223 (0%)

Query  25   VVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGFGVLR  84
            +VDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGFGVLR
Sbjct  1    MVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGFGVLR  60

Query  85   RLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGKGNK  144
            RLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGKGNK
Sbjct  61   RLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGKGNK  120

Query  145  EPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHVWR  204
            EPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHVWR
Sbjct  121  EPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHVWR  180

Query  205  YDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  247
            YDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR
Sbjct  181  YDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  223


>gi|333992254|ref|YP_004524868.1| two-component system response phosphate regulon transcriptional 
regulator PhoP [Mycobacterium sp. JDM601]
 gi|333488222|gb|AEF37614.1| two-component system response phosphate regulon transcriptional 
regulator PhoP [Mycobacterium sp. JDM601]
Length=239

 Score =  440 bits (1132),  Expect = 8e-122, Method: Compositional matrix adjust.
 Identities = 217/237 (92%), Positives = 224/237 (95%), Gaps = 0/237 (0%)

Query  11   GTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVIL  70
             T  ++  PEAR+LVVDDE NIVELLSVSLKFQGFEVYTA++G  ALDRARE RPDAVIL
Sbjct  3    ATAAQDAAPEARILVVDDETNIVELLSVSLKFQGFEVYTASSGPAALDRAREVRPDAVIL  62

Query  71   DVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVA  130
            DVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKI GLTLGGDDYVTKPFSLEEVVA
Sbjct  63   DVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKITGLTLGGDDYVTKPFSLEEVVA  122

Query  131  RLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAG  190
            RLRVILRRAGKG  EPRN RL+FADIELDE+THEVWKAGQPVSLSPTEFTLLRYFVINAG
Sbjct  123  RLRVILRRAGKGAGEPRNSRLSFADIELDEDTHEVWKAGQPVSLSPTEFTLLRYFVINAG  182

Query  191  TVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  247
            TVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR
Sbjct  183  TVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  239


>gi|118471457|ref|YP_890099.1| DNA-binding response regulator PhoP [Mycobacterium smegmatis 
str. MC2 155]
 gi|118172744|gb|ABK73640.1| DNA-binding response regulator PhoP [Mycobacterium smegmatis 
str. MC2 155]
Length=239

 Score =  435 bits (1118),  Expect = 3e-120, Method: Compositional matrix adjust.
 Identities = 214/231 (93%), Positives = 224/231 (97%), Gaps = 0/231 (0%)

Query  17   TTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPG  76
              PEARVLVVDDEANIVELLSVSLKFQGFEV+TA+NGA ALD+ARE RPDAVILDVMMPG
Sbjct  9    NVPEARVLVVDDEANIVELLSVSLKFQGFEVHTASNGAAALDKAREVRPDAVILDVMMPG  68

Query  77   MDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVIL  136
            MDGFG+LRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVIL
Sbjct  69   MDGFGLLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVIL  128

Query  137  RRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKP  196
            RR+G+G +E RN RLTFADIELDE+THEVWKAG+PVSLSPTEFTLLRYF+INAGTVLSKP
Sbjct  129  RRSGRGVEETRNARLTFADIELDEDTHEVWKAGEPVSLSPTEFTLLRYFIINAGTVLSKP  188

Query  197  KILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  247
            KILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR
Sbjct  189  KILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  239


>gi|108801553|ref|YP_641750.1| two component transcriptional regulator [Mycobacterium sp. MCS]
 gi|119870707|ref|YP_940659.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|126437538|ref|YP_001073229.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|108771972|gb|ABG10694.1| two component transcriptional regulator, winged helix family 
[Mycobacterium sp. MCS]
 gi|119696796|gb|ABL93869.1| two component transcriptional regulator, winged helix family 
[Mycobacterium sp. KMS]
 gi|126237338|gb|ABO00739.1| two component transcriptional regulator, winged helix family 
[Mycobacterium sp. JLS]
Length=239

 Score =  433 bits (1114),  Expect = 1e-119, Method: Compositional matrix adjust.
 Identities = 211/232 (91%), Positives = 225/232 (97%), Gaps = 0/232 (0%)

Query  16   NTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMP  75
             TTPEARVLVVDDEANIVELLSVSLKFQGFEV+TA++GA ALD+AR+ RPDAVILDVMMP
Sbjct  8    ETTPEARVLVVDDEANIVELLSVSLKFQGFEVHTASDGASALDKARDVRPDAVILDVMMP  67

Query  76   GMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVI  135
            GMDGFG+LRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVI
Sbjct  68   GMDGFGLLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVI  127

Query  136  LRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSK  195
            LRR G+G +EP+  RL+FADIELDE+THEVWKAG+PVSLSPTEFTLLRYF+INAGTVLSK
Sbjct  128  LRRTGRGAEEPKTSRLSFADIELDEDTHEVWKAGEPVSLSPTEFTLLRYFIINAGTVLSK  187

Query  196  PKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  247
            PKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGE+RLLHTLRGVGYVLREPR
Sbjct  188  PKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGERRLLHTLRGVGYVLREPR  239


>gi|120406123|ref|YP_955952.1| two component transcriptional regulator [Mycobacterium vanbaalenii 
PYR-1]
 gi|119958941|gb|ABM15946.1| two component transcriptional regulator, winged helix family 
[Mycobacterium vanbaalenii PYR-1]
Length=236

 Score =  433 bits (1113),  Expect = 1e-119, Method: Compositional matrix adjust.
 Identities = 212/235 (91%), Positives = 225/235 (96%), Gaps = 0/235 (0%)

Query  13   PGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDV  72
            P     PEARVLVVDDEANIVELLSVSLKFQGFEV+TA+NG  ALD+ARE RPDA+ILDV
Sbjct  2    PVPENVPEARVLVVDDEANIVELLSVSLKFQGFEVHTASNGPAALDKAREVRPDAIILDV  61

Query  73   MMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARL  132
            MMPGMDGFG+LRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARL
Sbjct  62   MMPGMDGFGLLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARL  121

Query  133  RVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTV  192
            RVILRR+G+G++EPR  RLTFADIELDE+THEVWKAG+PVSLSPTEFTLLRYF+INAGTV
Sbjct  122  RVILRRSGRGHEEPRTSRLTFADIELDEDTHEVWKAGEPVSLSPTEFTLLRYFIINAGTV  181

Query  193  LSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  247
            LSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTG+KRLLHTLRGVGYVLREPR
Sbjct  182  LSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGDKRLLHTLRGVGYVLREPR  236


>gi|145222173|ref|YP_001132851.1| two component transcriptional regulator [Mycobacterium gilvum 
PYR-GCK]
 gi|315442611|ref|YP_004075490.1| response regulator with CheY-like receiver domain and winged-helix 
DNA-binding domain [Mycobacterium sp. Spyr1]
 gi|145214659|gb|ABP44063.1| two component transcriptional regulator, winged helix family 
[Mycobacterium gilvum PYR-GCK]
 gi|315260914|gb|ADT97655.1| response regulator with CheY-like receiver domain and winged-helix 
DNA-binding domain [Mycobacterium sp. Spyr1]
Length=238

 Score =  427 bits (1099),  Expect = 5e-118, Method: Compositional matrix adjust.
 Identities = 211/235 (90%), Positives = 222/235 (95%), Gaps = 0/235 (0%)

Query  13   PGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDV  72
            P     PEARVLVVDDEANIVELLSVSLKFQGFEV+TA+NG  ALD+ARE RPDA+ILDV
Sbjct  4    PVPENVPEARVLVVDDEANIVELLSVSLKFQGFEVHTASNGPAALDKAREVRPDAIILDV  63

Query  73   MMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARL  132
            MMPGMDGFG+LRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARL
Sbjct  64   MMPGMDGFGLLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARL  123

Query  133  RVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTV  192
            RVILRR+G   +EPR  RLTFADIELDE+THEVWKAG+PVSLSPTEFTLLRYF+INAGTV
Sbjct  124  RVILRRSGGRVQEPRTSRLTFADIELDEDTHEVWKAGEPVSLSPTEFTLLRYFIINAGTV  183

Query  193  LSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  247
            LSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTG+KRLLHTLRGVGYVLREPR
Sbjct  184  LSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGDKRLLHTLRGVGYVLREPR  238


>gi|169627776|ref|YP_001701425.1| putative DNA-binding response regulator PhoP [Mycobacterium abscessus 
ATCC 19977]
 gi|169239743|emb|CAM60771.1| Putative DNA-binding response regulator PhoP [Mycobacterium abscessus]
Length=247

 Score =  413 bits (1062),  Expect = 1e-113, Method: Compositional matrix adjust.
 Identities = 205/237 (87%), Positives = 217/237 (92%), Gaps = 0/237 (0%)

Query  11   GTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVIL  70
            GT   N T  A+VLVVDDE+NIVELLSVSLKFQGF+VYTA +GA ALD AR  RPDAVIL
Sbjct  11   GTFSANGTTPAKVLVVDDESNIVELLSVSLKFQGFDVYTADSGAAALDLARTVRPDAVIL  70

Query  71   DVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVA  130
            DVMMPGMDGFGVLRRLRADGIDAP LFLTARD LQDKIAGLTLG DDYVTKPFSLEEVVA
Sbjct  71   DVMMPGMDGFGVLRRLRADGIDAPTLFLTARDGLQDKIAGLTLGADDYVTKPFSLEEVVA  130

Query  131  RLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAG  190
            RLRVILRR+G G++  R  RL+FADIELDE+THEVWKAG+PV+LSPTEFTLLRYF+INAG
Sbjct  131  RLRVILRRSGMGSEPARKSRLSFADIELDEDTHEVWKAGEPVALSPTEFTLLRYFMINAG  190

Query  191  TVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  247
            TVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKID GEKRLLHTLRGVGYVLREPR
Sbjct  191  TVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDNGEKRLLHTLRGVGYVLREPR  247


>gi|37813698|gb|AAR04621.1| PhoP [Rhodococcus equi]
Length=242

 Score =  374 bits (960),  Expect = 7e-102, Method: Compositional matrix adjust.
 Identities = 180/234 (77%), Positives = 211/234 (91%), Gaps = 1/234 (0%)

Query  14   GENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVM  73
            G + TP+ RVL+VDDE ++VELLSVSL+FQGFEV TA NGA+ LD+AR  RPDA+ILDVM
Sbjct  10   GVSETPQVRVLIVDDEPSLVELLSVSLRFQGFEVETAANGAEGLDKARAFRPDALILDVM  69

Query  74   MPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLR  133
            MPGMDGFG+LRRLRADG+DAP LFLTARD+++DK+ GLT+G DDYVTKPFSLEEVV RLR
Sbjct  70   MPGMDGFGMLRRLRADGVDAPVLFLTARDAVEDKVTGLTIGADDYVTKPFSLEEVVTRLR  129

Query  134  VILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVL  193
            VILRRAG  + + ++ R+TFAD+ELD++T EVWKAG+PVSLSPTEFTLLRYF++NAGTVL
Sbjct  130  VILRRAGHSD-DKQSARVTFADLELDDDTREVWKAGEPVSLSPTEFTLLRYFMVNAGTVL  188

Query  194  SKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  247
            SKP+ILDHVW YDFGG+V VVESYVSYLRRKIDT E RL+HTLRGVGYV+REPR
Sbjct  189  SKPRILDHVWNYDFGGEVGVVESYVSYLRRKIDTTEPRLIHTLRGVGYVMREPR  242


>gi|226304476|ref|YP_002764434.1| two-component response regulator PhoP [Rhodococcus erythropolis 
PR4]
 gi|226183591|dbj|BAH31695.1| two-component response regulator PhoP [Rhodococcus erythropolis 
PR4]
Length=243

 Score =  374 bits (959),  Expect = 8e-102, Method: Compositional matrix adjust.
 Identities = 181/232 (79%), Positives = 207/232 (90%), Gaps = 0/232 (0%)

Query  16   NTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMP  75
            + TPEAR+LVVDDE  IVELLSVSL+FQGFEV TA++GAQ LD AR  RPDA++LDVMMP
Sbjct  11   DKTPEARILVVDDEPTIVELLSVSLRFQGFEVATASSGAQGLDVARTFRPDAIVLDVMMP  70

Query  76   GMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVI  135
            GMDGFG+LRRLRADG+DAP LFLTA+DSL DKI+GLTLG DDYVTKPFSLEEVV RLRVI
Sbjct  71   GMDGFGLLRRLRADGVDAPVLFLTAKDSLDDKISGLTLGADDYVTKPFSLEEVVTRLRVI  130

Query  136  LRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSK  195
            LRRAG+G    ++ R+ FADIELD++T EVWK G+ V+LSPTEFTLLRYF++NAGTVLSK
Sbjct  131  LRRAGRGVAPEQSPRVKFADIELDDDTREVWKKGELVALSPTEFTLLRYFMVNAGTVLSK  190

Query  196  PKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  247
            P+ILDHVW YDFGG+V VVESYVSYLRRK+DTGE  L+HTLRGVGYV+REPR
Sbjct  191  PRILDHVWNYDFGGEVGVVESYVSYLRRKVDTGETPLIHTLRGVGYVMREPR  242


>gi|229494339|ref|ZP_04388102.1| transcriptional regulatory protein [Rhodococcus erythropolis 
SK121]
 gi|229318701|gb|EEN84559.1| transcriptional regulatory protein [Rhodococcus erythropolis 
SK121]
Length=235

 Score =  373 bits (958),  Expect = 1e-101, Method: Compositional matrix adjust.
 Identities = 181/232 (79%), Positives = 207/232 (90%), Gaps = 0/232 (0%)

Query  16   NTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMP  75
            + TPEAR+LVVDDE  IVELLSVSL+FQGFEV TA++GAQ LD AR  RPDA++LDVMMP
Sbjct  3    DKTPEARILVVDDEPTIVELLSVSLRFQGFEVATASSGAQGLDVARTFRPDAIVLDVMMP  62

Query  76   GMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVI  135
            GMDGFG+LRRLRADG+DAP LFLTA+DSL DKI+GLTLG DDYVTKPFSLEEVV RLRVI
Sbjct  63   GMDGFGLLRRLRADGVDAPVLFLTAKDSLDDKISGLTLGADDYVTKPFSLEEVVTRLRVI  122

Query  136  LRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSK  195
            LRRAG+G    ++ R+ FADIELD++T EVWK G+ V+LSPTEFTLLRYF++NAGTVLSK
Sbjct  123  LRRAGRGVAPEQSPRVKFADIELDDDTREVWKKGELVALSPTEFTLLRYFMVNAGTVLSK  182

Query  196  PKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  247
            P+ILDHVW YDFGG+V VVESYVSYLRRK+DTGE  L+HTLRGVGYV+REPR
Sbjct  183  PRILDHVWNYDFGGEVGVVESYVSYLRRKVDTGETPLIHTLRGVGYVMREPR  234


>gi|226364243|ref|YP_002782025.1| two-component response regulator PhoP [Rhodococcus opacus B4]
 gi|226242732|dbj|BAH53080.1| two-component response regulator PhoP [Rhodococcus opacus B4]
Length=240

 Score =  372 bits (956),  Expect = 2e-101, Method: Compositional matrix adjust.
 Identities = 183/233 (79%), Positives = 208/233 (90%), Gaps = 1/233 (0%)

Query  16   NTTP-EARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMM  74
            N  P EARVLVVDDE NI+ELLSVSL+FQGFEV TA+ GA+ LD AR  RPDAVILDVMM
Sbjct  7    NEKPVEARVLVVDDEPNILELLSVSLRFQGFEVATASTGAEGLDTARTFRPDAVILDVMM  66

Query  75   PGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRV  134
            PGMDGFG+L+RLRADG+DAP LFLTA+D+++DKI+GLTLG DDYVTKPFSLEEVV RLRV
Sbjct  67   PGMDGFGLLKRLRADGVDAPVLFLTAKDAVEDKISGLTLGADDYVTKPFSLEEVVTRLRV  126

Query  135  ILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLS  194
            ILRRAGK + E ++ R+ FADIELD++T EVWKAG  VSLSPTEFTLLRYF++NAGTVLS
Sbjct  127  ILRRAGKVSVEEQSARIKFADIELDDDTREVWKAGDLVSLSPTEFTLLRYFMVNAGTVLS  186

Query  195  KPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  247
            KP+ILDHVW YDFGG+V VVESYVSYLRRK+DTGE  L+HTLRGVGYV+REPR
Sbjct  187  KPRILDHVWNYDFGGEVGVVESYVSYLRRKVDTGETPLIHTLRGVGYVMREPR  239


>gi|111021712|ref|YP_704684.1| response regulator, two-component system [Rhodococcus jostii 
RHA1]
 gi|110821242|gb|ABG96526.1| response regulator, two-component system [Rhodococcus jostii 
RHA1]
Length=235

 Score =  372 bits (955),  Expect = 3e-101, Method: Compositional matrix adjust.
 Identities = 183/233 (79%), Positives = 208/233 (90%), Gaps = 1/233 (0%)

Query  16   NTTP-EARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMM  74
            N  P EARVLVVDDE NI+ELLSVSL+FQGFEV TA+ GA+ LD AR  RPDAVILDVMM
Sbjct  2    NEKPVEARVLVVDDEPNILELLSVSLRFQGFEVATASTGAEGLDTARTFRPDAVILDVMM  61

Query  75   PGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRV  134
            PGMDGFG+L+RLRADG+DAP LFLTA+D+++DKI+GLTLG DDYVTKPFSLEEVV RLRV
Sbjct  62   PGMDGFGLLKRLRADGVDAPVLFLTAKDAVEDKISGLTLGADDYVTKPFSLEEVVTRLRV  121

Query  135  ILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLS  194
            ILRRAGK + E ++ R+ FADIELD++T EVWKAG  VSLSPTEFTLLRYF++NAGTVLS
Sbjct  122  ILRRAGKVSVEEQSARIKFADIELDDDTREVWKAGDLVSLSPTEFTLLRYFMVNAGTVLS  181

Query  195  KPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  247
            KP+ILDHVW YDFGG+V VVESYVSYLRRK+DTGE  L+HTLRGVGYV+REPR
Sbjct  182  KPRILDHVWNYDFGGEVGVVESYVSYLRRKVDTGETPLIHTLRGVGYVMREPR  234


>gi|54022513|ref|YP_116755.1| putative two-component system response regulator [Nocardia farcinica 
IFM 10152]
 gi|54014021|dbj|BAD55391.1| putative two-component system response regulator [Nocardia farcinica 
IFM 10152]
Length=239

 Score =  372 bits (955),  Expect = 3e-101, Method: Compositional matrix adjust.
 Identities = 180/228 (79%), Positives = 205/228 (90%), Gaps = 0/228 (0%)

Query  19   PEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMD  78
            PEARVLVVDDE  IVELLSVSL+FQGFEV TA +GAQALD+AR  RP A+I+DVMMPG+D
Sbjct  10   PEARVLVVDDEPMIVELLSVSLRFQGFEVETAVDGAQALDKARSFRPQAMIVDVMMPGID  69

Query  79   GFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR  138
            GFG+L RLRADGIDAP LFLTARD +QDK+AGLTLG DDY+TKPFSLEEVVARLRV+LRR
Sbjct  70   GFGLLPRLRADGIDAPVLFLTARDDVQDKVAGLTLGADDYITKPFSLEEVVARLRVVLRR  129

Query  139  AGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKI  198
            AG G     + R+ F DIELD++THEVWKAG PVSLSPTEFTLLRYF++NAGTVLSKP+I
Sbjct  130  AGHGAPVRESSRIRFEDIELDDDTHEVWKAGVPVSLSPTEFTLLRYFMVNAGTVLSKPRI  189

Query  199  LDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREP  246
            LDHVWRYDFGG+V VVE+YVSYLR+K+DTGE+RL+HTLRGVGYV+R P
Sbjct  190  LDHVWRYDFGGEVGVVETYVSYLRKKVDTGERRLIHTLRGVGYVMRAP  237


>gi|262200820|ref|YP_003272028.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262084167|gb|ACY20135.1| response regulator receiver [Gordonia bronchialis DSM 43247]
Length=241

 Score =  372 bits (954),  Expect = 4e-101, Method: Compositional matrix adjust.
 Identities = 181/236 (77%), Positives = 211/236 (90%), Gaps = 2/236 (0%)

Query  14   GENTTPE--ARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILD  71
            G+N  P   A++LVVDDE NI +LLSVSLKFQG+EV TA +G  A+DR R  +PDA+ILD
Sbjct  5    GKNQNPGQGAKILVVDDEENIRQLLSVSLKFQGYEVETAESGPAAIDRCRTFKPDALILD  64

Query  72   VMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVAR  131
            VMMPGMDGFG+LRRLRADGI+APALFL+ARDS++DKI GLT+GGDDYVTKPFSLEEVVAR
Sbjct  65   VMMPGMDGFGLLRRLRADGIEAPALFLSARDSVEDKINGLTIGGDDYVTKPFSLEEVVAR  124

Query  132  LRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGT  191
            L+V+LRR+G    E +  R+TFADIELD+ETHEV+KAG  VSLSPTEFTLLRYF++NAGT
Sbjct  125  LQVLLRRSGFDATEKQASRITFADIELDDETHEVFKAGNLVSLSPTEFTLLRYFMVNAGT  184

Query  192  VLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  247
            VLSKP+ILDHVW YDFGG+VNVVESYVSYLRRK+DTG+KRL+HTLRGVGYV+REPR
Sbjct  185  VLSKPRILDHVWNYDFGGEVNVVESYVSYLRRKLDTGDKRLIHTLRGVGYVMREPR  240


>gi|325674850|ref|ZP_08154537.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
 gi|325554436|gb|EGD24111.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
Length=232

 Score =  371 bits (952),  Expect = 6e-101, Method: Compositional matrix adjust.
 Identities = 178/232 (77%), Positives = 209/232 (91%), Gaps = 1/232 (0%)

Query  16   NTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMP  75
            + TP+ RVL+VDDE ++VELLSVSL+FQGFEV T TNGA+ LD+AR  RPDA+ILDVMMP
Sbjct  2    SETPQVRVLIVDDEPSLVELLSVSLRFQGFEVETGTNGAEGLDKARAFRPDALILDVMMP  61

Query  76   GMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVI  135
            GMDGFG+LRRLRADG+DAP LFLTARD+++DK+ GLT+G DDYVTKPFSLEEVV RLRVI
Sbjct  62   GMDGFGMLRRLRADGVDAPVLFLTARDAVEDKVTGLTIGADDYVTKPFSLEEVVTRLRVI  121

Query  136  LRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSK  195
            LRRAG  + + ++ R+TFAD+ELD++T EVWKAG+PVSLSPTEFTLLRYF++NAGTVLSK
Sbjct  122  LRRAGHSD-DKQSARVTFADLELDDDTREVWKAGEPVSLSPTEFTLLRYFMVNAGTVLSK  180

Query  196  PKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  247
            P+IL HVW YDFGG+V VVESYVSYLRRKIDT E RL+HTLRGVGYV+REPR
Sbjct  181  PRILAHVWNYDFGGEVGVVESYVSYLRRKIDTTEPRLIHTLRGVGYVMREPR  232


>gi|343925788|ref|ZP_08765303.1| two-component response regulator PhoP [Gordonia alkanivorans 
NBRC 16433]
 gi|343764139|dbj|GAA12229.1| two-component response regulator PhoP [Gordonia alkanivorans 
NBRC 16433]
Length=226

 Score =  369 bits (948),  Expect = 2e-100, Method: Compositional matrix adjust.
 Identities = 175/225 (78%), Positives = 205/225 (92%), Gaps = 0/225 (0%)

Query  23   VLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGFGV  82
            +LVVDDE NI ELLSVSLKFQG++V TA +G  A+DR R  +PD +ILDVMMPGMDGFG+
Sbjct  1    MLVVDDEENIRELLSVSLKFQGYDVETAADGPAAIDRCRSRKPDVLILDVMMPGMDGFGL  60

Query  83   LRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGKG  142
            LRRLRADG++APALFL+ARDS++DK+ GLT+GGDDYVTKPFSLEEVVARL+V+LRR+G G
Sbjct  61   LRRLRADGVEAPALFLSARDSVEDKVNGLTIGGDDYVTKPFSLEEVVARLQVLLRRSGFG  120

Query  143  NKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHV  202
              E  + R+TFADIELD+ETHEV+KAGQPV LSPTEFTLLRYF++NAGTVLSKP+ILDHV
Sbjct  121  EAEQSSSRITFADIELDDETHEVFKAGQPVQLSPTEFTLLRYFMVNAGTVLSKPRILDHV  180

Query  203  WRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  247
            W YDFGG+VNVVESYVSYLRRK+D GE+RL+HTLRGVGYV+REPR
Sbjct  181  WNYDFGGEVNVVESYVSYLRRKLDNGERRLIHTLRGVGYVMREPR  225


>gi|312138242|ref|YP_004005578.1| two component system response regulator phop [Rhodococcus equi 
103S]
 gi|311887581|emb|CBH46893.1| two component system response regulator PhoP [Rhodococcus equi 
103S]
Length=224

 Score =  364 bits (935),  Expect = 5e-99, Method: Compositional matrix adjust.
 Identities = 175/225 (78%), Positives = 205/225 (92%), Gaps = 1/225 (0%)

Query  23   VLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGFGV  82
            +L+VDDE ++VELLSVSL+FQGFEV TA NGA+ LD+AR  RPDA+ILDVMMPGMDGFG+
Sbjct  1    MLIVDDEPSLVELLSVSLRFQGFEVETAANGAEGLDKARAFRPDALILDVMMPGMDGFGM  60

Query  83   LRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGKG  142
            LRRLRADG+DAP LFLTARD+++DK+ GLT+G DDYVTKPFSLEEVV RLRVILRRAG  
Sbjct  61   LRRLRADGVDAPVLFLTARDAVEDKVTGLTIGADDYVTKPFSLEEVVTRLRVILRRAGHS  120

Query  143  NKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHV  202
            + + ++ R+TFAD+ELD++T EVWKAG+PVSLSPTEFTLLRYF++NAGTVLSKP+ILDHV
Sbjct  121  D-DKQSARVTFADLELDDDTREVWKAGEPVSLSPTEFTLLRYFMVNAGTVLSKPRILDHV  179

Query  203  WRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  247
            W YDFGG+V VVESYVSYLRRKIDT E RL+HTLRGVGYV+REPR
Sbjct  180  WNYDFGGEVGVVESYVSYLRRKIDTTEPRLIHTLRGVGYVMREPR  224


>gi|296141305|ref|YP_003648548.1| winged helix family two component transcriptional regulator [Tsukamurella 
paurometabola DSM 20162]
 gi|296029439|gb|ADG80209.1| two component transcriptional regulator, winged helix family 
[Tsukamurella paurometabola DSM 20162]
Length=235

 Score =  363 bits (931),  Expect = 2e-98, Method: Compositional matrix adjust.
 Identities = 177/228 (78%), Positives = 200/228 (88%), Gaps = 1/228 (0%)

Query  20   EARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDG  79
            + RVLVVDDE +I ELL VSLKFQGF+V  A +G  ALDR R   PD ++LD+MMPGMDG
Sbjct  9    QPRVLVVDDEQSIRELLQVSLKFQGFDVTVAQDGPSALDRVRTFHPDVMVLDIMMPGMDG  68

Query  80   FGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRA  139
             G+L+RLR DGIDAPALFLTARDS++DK+AGLTLGGDDYVTKPFSLEEVVAR+ V+LRR+
Sbjct  69   LGLLKRLRQDGIDAPALFLTARDSVEDKVAGLTLGGDDYVTKPFSLEEVVARINVLLRRS  128

Query  140  GKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKIL  199
            G G KE    RL FAD+ELD+ETHEVWKAG+ VSLSPTEFTLLRYF++NAG VLSKP+IL
Sbjct  129  GFGQKE-EITRLKFADLELDDETHEVWKAGELVSLSPTEFTLLRYFMVNAGVVLSKPRIL  187

Query  200  DHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  247
            DHVW YDFGGDVNVVESYVSYLRRK+DTGE RL+HTLRGVGYVLREPR
Sbjct  188  DHVWHYDFGGDVNVVESYVSYLRRKVDTGEPRLIHTLRGVGYVLREPR  235


>gi|326384016|ref|ZP_08205699.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
 gi|326197176|gb|EGD54367.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
Length=235

 Score =  358 bits (919),  Expect = 4e-97, Method: Compositional matrix adjust.
 Identities = 174/227 (77%), Positives = 202/227 (89%), Gaps = 0/227 (0%)

Query  21   ARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGF  80
            A+VLVVDDE NI ELLSVSLKFQG+EV  A +G +ALD  R  +PD ++LDVMMPGMDGF
Sbjct  8    AKVLVVDDEENIRELLSVSLKFQGYEVVAAADGPRALDVVRTFKPDILVLDVMMPGMDGF  67

Query  81   GVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAG  140
            G+LRRLRADGIDAPALFL+ARDS++DK+ GLT+GGDDYVTKPFSLEEVVARL V+LRR+G
Sbjct  68   GLLRRLRADGIDAPALFLSARDSVEDKVNGLTIGGDDYVTKPFSLEEVVARLAVLLRRSG  127

Query  141  KGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILD  200
             G  +    R+ F+D+ELD+ETHEV+K G+ VSLSPTEFTLLRYF++NAGTVLSKP+ILD
Sbjct  128  FGVGDEEPTRIVFSDLELDDETHEVFKNGELVSLSPTEFTLLRYFMVNAGTVLSKPRILD  187

Query  201  HVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  247
            HVW YDFGGDVNVVESYVSYLRRK+DTG KRL+HTLRGVGYV+REPR
Sbjct  188  HVWSYDFGGDVNVVESYVSYLRRKVDTGPKRLIHTLRGVGYVMREPR  234


>gi|319951282|ref|ZP_08025117.1| DNA-binding response regulator PhoP [Dietzia cinnamea P4]
 gi|319435055|gb|EFV90340.1| DNA-binding response regulator PhoP [Dietzia cinnamea P4]
Length=225

 Score =  355 bits (912),  Expect = 3e-96, Method: Compositional matrix adjust.
 Identities = 173/225 (77%), Positives = 198/225 (88%), Gaps = 0/225 (0%)

Query  23   VLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGFGV  82
            +LVVDDE NIVELLSVSLKFQGFEV TA  GA+A+D+AR  RPDAVILDVMMP MDGF  
Sbjct  1    MLVVDDEENIVELLSVSLKFQGFEVATARTGAEAIDKARTFRPDAVILDVMMPVMDGFDA  60

Query  83   LRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGKG  142
            ++RLRADG DAP LFLTARD+++D++AGLTLG DDYVTKPFSLEEVVARLR ILRR G  
Sbjct  61   VKRLRADGCDAPVLFLTARDAVEDRVAGLTLGADDYVTKPFSLEEVVARLRTILRRTGTL  120

Query  143  NKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHV  202
            +   R+ RLTFAD+ELDE++HEV+KAG+PV+LSPTEFTLLRY ++NAGTVLSK +ILDHV
Sbjct  121  SAAERSARLTFADLELDEDSHEVYKAGRPVALSPTEFTLLRYLMLNAGTVLSKARILDHV  180

Query  203  WRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  247
            W YDFGGD  VVESYVSYLR+KIDT E RL+HT+RGVGYVLREPR
Sbjct  181  WDYDFGGDGGVVESYVSYLRKKIDTAEPRLIHTIRGVGYVLREPR  225


>gi|284993022|ref|YP_003411576.1| winged helix family two component transcriptional regulator [Geodermatophilus 
obscurus DSM 43160]
 gi|284066267|gb|ADB77205.1| two component transcriptional regulator, winged helix family 
[Geodermatophilus obscurus DSM 43160]
Length=240

 Score =  325 bits (834),  Expect = 3e-87, Method: Compositional matrix adjust.
 Identities = 159/231 (69%), Positives = 187/231 (81%), Gaps = 0/231 (0%)

Query  17   TTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPG  76
            + PEAR+LVVDDE NI ELLS SL++ GFEV TA +G QAL  A   RPD ++LDVMMPG
Sbjct  8    SAPEARLLVVDDEPNIRELLSASLRYAGFEVATAADGHQALAMAASFRPDLLVLDVMMPG  67

Query  77   MDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVIL  136
            +DGFGV+RRLR  G   P LFLTARD+ +DK++GLTLGGDDYVTKPFSL+EV+AR+R +L
Sbjct  68   LDGFGVVRRLRESGRHTPVLFLTARDAAEDKVSGLTLGGDDYVTKPFSLDEVLARIRAVL  127

Query  137  RRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKP  196
            RR+    +   + RL+FADIELDEE+HEV KAG+ VSLSPTEF LLRY + NAG VLSK 
Sbjct  128  RRSTGPQRPAESPRLSFADIELDEESHEVVKAGEVVSLSPTEFKLLRYLMANAGRVLSKA  187

Query  197  KILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  247
            +ILDHVW YDF GD NVVESY+SYLRRK+DT E RLLHT+RGVGY LR PR
Sbjct  188  QILDHVWNYDFNGDANVVESYISYLRRKVDTTEPRLLHTIRGVGYTLRLPR  238


>gi|317509453|ref|ZP_07967071.1| response regulator receiver domain-containing protein [Segniliparus 
rugosus ATCC BAA-974]
 gi|316252282|gb|EFV11734.1| response regulator receiver domain-containing protein [Segniliparus 
rugosus ATCC BAA-974]
Length=240

 Score =  322 bits (825),  Expect = 3e-86, Method: Compositional matrix adjust.
 Identities = 162/240 (68%), Positives = 187/240 (78%), Gaps = 0/240 (0%)

Query  8    VTAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDA  67
            +TA     +    + +L+VDDE NI  LL   L  QGF V  A N   AL    +  PDA
Sbjct  1    MTATLASNSGARTSSILIVDDEPNIAYLLRECLLAQGFNVKEAHNPTDALAVVTKEPPDA  60

Query  68   VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE  127
            +ILDVM+PGMDG+ +LRR+R  G + P LFLTARDSL+DK+ GLT+GGDDYVTKPFSLEE
Sbjct  61   MILDVMLPGMDGYTLLRRVREMGTECPVLFLTARDSLEDKLTGLTIGGDDYVTKPFSLEE  120

Query  128  VVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI  187
            VVARLRVILRRAGK +    +  L F DIEL+EETHEVWKAGQ VSLSPTEFTLLRYF++
Sbjct  121  VVARLRVILRRAGKSDGARESPTLVFEDIELNEETHEVWKAGQLVSLSPTEFTLLRYFMV  180

Query  188  NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  247
            NA  VLSK +IL+HVW YDFGGD+NVVESYVSYLRRKIDTGEK++L TLRGVGYVLREPR
Sbjct  181  NARIVLSKRQILEHVWHYDFGGDMNVVESYVSYLRRKIDTGEKKMLQTLRGVGYVLREPR  240


>gi|25029050|ref|NP_739104.1| hypothetical protein CE2494 [Corynebacterium efficiens YS-314]
 gi|23494337|dbj|BAC19304.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
Length=240

 Score =  320 bits (820),  Expect = 1e-85, Method: Compositional matrix adjust.
 Identities = 157/234 (68%), Positives = 190/234 (82%), Gaps = 1/234 (0%)

Query  15   ENTTP-EARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVM  73
            EN T  + +VLVVDDE NIVELL+VSLKFQGF V TA++G + L  ARE RPDA ILDVM
Sbjct  6    ENQTDGQVKVLVVDDEPNIVELLTVSLKFQGFNVMTASDGNEGLKIAREFRPDAYILDVM  65

Query  74   MPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLR  133
            MPGMDGF +L +LRA+G+D P L+LTA+D+++++I GLT+G DDYVTKPFSLEEV+ RLR
Sbjct  66   MPGMDGFELLTKLRAEGLDGPVLYLTAKDAVENRIHGLTIGADDYVTKPFSLEEVITRLR  125

Query  134  VILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVL  193
            VILRR G    E  +  LT+AD+ L++ETHEV KAG+ V LSPTEF LLRY ++NA  VL
Sbjct  126  VILRRGGSVESESNDATLTYADLTLNDETHEVTKAGELVDLSPTEFNLLRYLMLNAEVVL  185

Query  194  SKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  247
            SK KILD+VW YDFGGD NVVESY+SYLRRK+DT E +L+ T+RGVGYVLR PR
Sbjct  186  SKAKILDNVWHYDFGGDGNVVESYISYLRRKVDTHEPQLIQTVRGVGYVLRTPR  239


>gi|259505958|ref|ZP_05748860.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
 gi|259166439|gb|EEW50993.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
Length=236

 Score =  319 bits (818),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 157/234 (68%), Positives = 190/234 (82%), Gaps = 1/234 (0%)

Query  15   ENTTP-EARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVM  73
            EN T  + +VLVVDDE NIVELL+VSLKFQGF V TA++G + L  ARE RPDA ILDVM
Sbjct  2    ENQTDGQVKVLVVDDEPNIVELLTVSLKFQGFNVMTASDGNEGLKIAREFRPDAYILDVM  61

Query  74   MPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLR  133
            MPGMDGF +L +LRA+G+D P L+LTA+D+++++I GLT+G DDYVTKPFSLEEV+ RLR
Sbjct  62   MPGMDGFELLTKLRAEGLDGPVLYLTAKDAVENRIHGLTIGADDYVTKPFSLEEVITRLR  121

Query  134  VILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVL  193
            VILRR G    E  +  LT+AD+ L++ETHEV KAG+ V LSPTEF LLRY ++NA  VL
Sbjct  122  VILRRGGSVESESNDATLTYADLTLNDETHEVTKAGELVDLSPTEFNLLRYLMLNAEVVL  181

Query  194  SKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  247
            SK KILD+VW YDFGGD NVVESY+SYLRRK+DT E +L+ T+RGVGYVLR PR
Sbjct  182  SKAKILDNVWHYDFGGDGNVVESYISYLRRKVDTHEPQLIQTVRGVGYVLRTPR  235


>gi|172041315|ref|YP_001801029.1| two-component system response regulator [Corynebacterium urealyticum 
DSM 7109]
 gi|171852619|emb|CAQ05595.1| two-component system response regulator [Corynebacterium urealyticum 
DSM 7109]
Length=256

 Score =  318 bits (816),  Expect = 4e-85, Method: Compositional matrix adjust.
 Identities = 163/240 (68%), Positives = 189/240 (79%), Gaps = 7/240 (2%)

Query  14   GEN---TTPEA---RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDA  67
            GEN   TTP     +VLVVDDE NI +L+ VSLKFQGF+V TA NG  AL+ A   RPDA
Sbjct  17   GENRAMTTPNTQPVKVLVVDDEDNISDLIKVSLKFQGFDVETADNGQTALEIAETYRPDA  76

Query  68   VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE  127
             ILDVMMPGMDGF +L +LR  G DAPALFLTA+D ++D+I GLT+G DDYVTKPFSLEE
Sbjct  77   FILDVMMPGMDGFTLLNKLREAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEE  136

Query  128  VVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI  187
            V+ RLRVILRR  K + E  ++ +T+ DI LD++ HEV KAG+ V LSPTEF LLRY ++
Sbjct  137  VITRLRVILRRVAKDDSEESSL-ITYEDITLDDDMHEVTKAGEVVDLSPTEFQLLRYLMV  195

Query  188  NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  247
            NA  VLSK KILDHVW YDFGGD NVVESYVSYLRRKIDT E RL+HT+RGVGYVLR+PR
Sbjct  196  NAEVVLSKSKILDHVWNYDFGGDGNVVESYVSYLRRKIDTKEPRLIHTVRGVGYVLRKPR  255


>gi|296392538|ref|YP_003657422.1| PhoB family transcriptional regulator [Segniliparus rotundus 
DSM 44985]
 gi|296179685|gb|ADG96591.1| two component transcriptional regulator, winged helix family 
[Segniliparus rotundus DSM 44985]
Length=240

 Score =  318 bits (815),  Expect = 5e-85, Method: Compositional matrix adjust.
 Identities = 160/240 (67%), Positives = 185/240 (78%), Gaps = 0/240 (0%)

Query  8    VTAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDA  67
            +TA     +    + +L+VDDE NI  LL   L  QGF V  A N   AL    +  PDA
Sbjct  1    MTATLASNSAAHTSSILIVDDEPNIAYLLRECLLAQGFSVKEAHNPTDALAVVTKEPPDA  60

Query  68   VILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE  127
            +ILDVM+PGMDG+ +LRR+R  G + P LFLTARDSL+DK+ GLT+GGDDYVTKPFSLEE
Sbjct  61   MILDVMLPGMDGYTLLRRVREMGTECPVLFLTARDSLEDKLTGLTIGGDDYVTKPFSLEE  120

Query  128  VVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVI  187
            VVARLRVILRRAGK +    +  L F DIEL+EETHEVWKAG  V LSPTEFTLLRYF++
Sbjct  121  VVARLRVILRRAGKSDGARESPTLVFEDIELNEETHEVWKAGVLVPLSPTEFTLLRYFMV  180

Query  188  NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  247
            NA  VLSK +IL+HVW YDFGGD+NVVESYVSYLRRKIDTGEK++L TLRGVGYVLREPR
Sbjct  181  NARIVLSKRQILEHVWHYDFGGDMNVVESYVSYLRRKIDTGEKKMLQTLRGVGYVLREPR  240


>gi|269124841|ref|YP_003298211.1| winged helix family two component transcriptional regulator [Thermomonospora 
curvata DSM 43183]
 gi|268309799|gb|ACY96173.1| two component transcriptional regulator, winged helix family 
[Thermomonospora curvata DSM 43183]
Length=244

 Score =  318 bits (814),  Expect = 7e-85, Method: Compositional matrix adjust.
 Identities = 156/239 (66%), Positives = 188/239 (79%), Gaps = 1/239 (0%)

Query  9    TAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAV  68
            TA  P       AR+LVV+D+ANI ELL+ SL+F GFEV TAT+G  A++ A   RPD +
Sbjct  5    TAHRPRPQRAAGARLLVVEDDANIRELLAGSLRFAGFEVVTATSGTTAVEAAHRHRPDLI  64

Query  69   ILDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEV  128
            +LDVM+P  DGF V+RRLR+ G   P LFLTARD++ D+I GLT+GGDDYVTKPFSLEEV
Sbjct  65   VLDVMLPDFDGFAVVRRLRSGGTHTPVLFLTARDAVGDRITGLTIGGDDYVTKPFSLEEV  124

Query  129  VARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVIN  188
            +AR+  ILRRA  G  EP + R+ FADIELDE++HEVW+AG+P+SLSPTEF LLRYF+ N
Sbjct  125  IARIHAILRRARGGAAEP-SPRMVFADIELDEDSHEVWRAGKPISLSPTEFKLLRYFMAN  183

Query  189  AGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  247
            AG VLSK +ILDHVW YDF GD  +VESYVS LRRK+D  E RL+HTLRGVGYVLR+PR
Sbjct  184  AGRVLSKAQILDHVWNYDFRGDAGIVESYVSALRRKVDNTEPRLIHTLRGVGYVLRQPR  242


>gi|300780471|ref|ZP_07090327.1| response regulator [Corynebacterium genitalium ATCC 33030]
 gi|300534581|gb|EFK55640.1| response regulator [Corynebacterium genitalium ATCC 33030]
Length=239

 Score =  317 bits (811),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 157/238 (66%), Positives = 192/238 (81%), Gaps = 3/238 (1%)

Query  10   AGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVI  69
            A TP   T    +VLVVDDE NIVELL+VSLKFQGFEV +A +G QAL+ ARE +P+A I
Sbjct  2    ADTP---TPQNVKVLVVDDEPNIVELLTVSLKFQGFEVESAESGQQALEMARELKPEAYI  58

Query  70   LDVMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVV  129
            LDVMMPGMDGF +L +LRA+G+DAP LFLTA+D+++D+I GLT+G DDYVTKPFSLEEV+
Sbjct  59   LDVMMPGMDGFELLGKLRAEGLDAPVLFLTAKDAVEDRIHGLTIGADDYVTKPFSLEEVI  118

Query  130  ARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINA  189
             RLRVILRR      E  +  + +AD+ L+++THEV KAG+ V LSPTEF LLRY ++NA
Sbjct  119  TRLRVILRRGNVTETETGDSTIRYADLTLNDDTHEVTKAGEIVELSPTEFNLLRYLMLNA  178

Query  190  GTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  247
              VLSK KILD+VW YDFGGD NVVESY+SYLRRK+D GE +L++T+RGVGYVLR PR
Sbjct  179  EVVLSKAKILDNVWHYDFGGDGNVVESYISYLRRKVDQGEPQLINTVRGVGYVLRTPR  236


>gi|311740194|ref|ZP_07714026.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311304749|gb|EFQ80820.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
Length=234

 Score =  315 bits (807),  Expect = 4e-84, Method: Compositional matrix adjust.
 Identities = 151/230 (66%), Positives = 184/230 (80%), Gaps = 0/230 (0%)

Query  18   TPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGM  77
            T  A+VLVVDDE NIVELL+VSLKFQ FEVY+A +G +AL  ARE  PDA ILDVMMPGM
Sbjct  4    TKLAKVLVVDDEPNIVELLTVSLKFQNFEVYSANSGNEALRIAREVNPDAYILDVMMPGM  63

Query  78   DGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILR  137
            DGF +L +LR +G+D P L+LTA+D +  +I GLT+G DDYVTKPFSLEEV+ RLRVI+R
Sbjct  64   DGFELLGKLRQEGLDGPVLYLTAKDGVDQRIHGLTIGADDYVTKPFSLEEVITRLRVIMR  123

Query  138  RAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPK  197
            R G   +   +  +++AD+ L+++THEV KAG+ + LSPTEF LLRY + N   VLSK K
Sbjct  124  RGGAAEESTNDATMSYADLTLNDDTHEVTKAGELIELSPTEFNLLRYLMQNKEVVLSKSK  183

Query  198  ILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  247
            ILD+VW YDFGGD NVVESY+SYLRRKIDTGE +L+HT+RGVGYVLR PR
Sbjct  184  ILDNVWHYDFGGDGNVVESYISYLRRKIDTGETQLIHTVRGVGYVLRTPR  233


>gi|271970059|ref|YP_003344255.1| response regulator receiver protein [Streptosporangium roseum 
DSM 43021]
 gi|270513234|gb|ACZ91512.1| response regulator receiver protein [Streptosporangium roseum 
DSM 43021]
Length=235

 Score =  315 bits (806),  Expect = 4e-84, Method: Compositional matrix adjust.
 Identities = 155/229 (68%), Positives = 183/229 (80%), Gaps = 0/229 (0%)

Query  18   TPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGM  77
            +PEAR+L+V+DE NI+ELL+ SL+F GF V TA NG  A+   +  RPD ++LDVM+P M
Sbjct  4    SPEARLLIVEDEPNILELLAASLRFAGFGVNTAGNGTDAVAAVQRHRPDLIVLDVMLPDM  63

Query  78   DGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILR  137
            DGF V+RRLR  G D P +FLTARD+ +DKI GLT GGDDYVTKPFSLEEVVAR+R +LR
Sbjct  64   DGFDVVRRLRGGGTDTPVVFLTARDATEDKIRGLTAGGDDYVTKPFSLEEVVARIRAVLR  123

Query  138  RAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPK  197
            R G G+   R  RLTFADIELDEE+HEVW+ G+ V+LSPTEF LLRYF+ NAG VLSK +
Sbjct  124  RTGAGDLPARPPRLTFADIELDEESHEVWRRGRAVALSPTEFKLLRYFMANAGRVLSKAQ  183

Query  198  ILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREP  246
            ILDHVW YDF GDV +VESYVS LRRKID  + RL+HTLRGVGYVLR P
Sbjct  184  ILDHVWDYDFRGDVGIVESYVSVLRRKIDNADPRLIHTLRGVGYVLRLP  232


>gi|255325893|ref|ZP_05366985.1| alkaline phosphatase synthesis transcriptional regulatory protein 
phoP [Corynebacterium tuberculostearicum SK141]
 gi|255297105|gb|EET76430.1| alkaline phosphatase synthesis transcriptional regulatory protein 
phoP [Corynebacterium tuberculostearicum SK141]
Length=234

 Score =  314 bits (805),  Expect = 6e-84, Method: Compositional matrix adjust.
 Identities = 151/230 (66%), Positives = 184/230 (80%), Gaps = 0/230 (0%)

Query  18   TPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGM  77
            T  A+VLVVDDE NIVELL+VSLKFQ FEVY+A +G +AL  ARE  PDA ILDVMMPGM
Sbjct  4    TKLAKVLVVDDEPNIVELLTVSLKFQDFEVYSANSGNEALRIAREVNPDAYILDVMMPGM  63

Query  78   DGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILR  137
            DGF +L +LR +G+D P L+LTA+D +  +I GLT+G DDYVTKPFSLEEV+ RLRVI+R
Sbjct  64   DGFELLGKLRQEGLDGPVLYLTAKDGVDQRIHGLTIGADDYVTKPFSLEEVITRLRVIMR  123

Query  138  RAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPK  197
            R G   +   +  +++AD+ L+++THEV KAG+ + LSPTEF LLRY + N   VLSK K
Sbjct  124  RGGAAEESTNDATMSYADLTLNDDTHEVTKAGELIELSPTEFNLLRYLMQNKEVVLSKSK  183

Query  198  ILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  247
            ILD+VW YDFGGD NVVESY+SYLRRKIDTGE +L+HT+RGVGYVLR PR
Sbjct  184  ILDNVWHYDFGGDGNVVESYISYLRRKIDTGETQLIHTVRGVGYVLRTPR  233


>gi|330469914|ref|YP_004407657.1| winged helix family two component transcriptional regulator [Verrucosispora 
maris AB-18-032]
 gi|328812885|gb|AEB47057.1| two component transcriptional regulator, winged helix family 
protein [Verrucosispora maris AB-18-032]
Length=236

 Score =  314 bits (804),  Expect = 1e-83, Method: Compositional matrix adjust.
 Identities = 153/230 (67%), Positives = 185/230 (81%), Gaps = 2/230 (0%)

Query  17   TTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPG  76
            T  EAR+LVV+D+ NI+ELLS SL+F GF+V TAT+G+ AL+ AR+ RPD V+LDVM+P 
Sbjct  7    TQTEARLLVVEDDPNILELLSASLRFAGFDVATATSGSAALNAARDHRPDLVVLDVMLPD  66

Query  77   MDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVIL  136
            +DGF V+R +R  G   P +FLTARD+  DKI GLTLGGDDYVTKPFSLEE+ AR+R +L
Sbjct  67   LDGFEVIRMMREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVL  126

Query  137  RRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKP  196
            RR   G + P   RLTFAD+ELDEETHEV++AGQ V LSPTEF LLRY ++NA  VLSK 
Sbjct  127  RRTSTGEQAP--ARLTFADLELDEETHEVYRAGQRVQLSPTEFKLLRYLMLNANRVLSKA  184

Query  197  KILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREP  246
            +ILDHVW YDF GD N+VESY+SYLRRK+D  E RL+HTLRGVGYVLR+P
Sbjct  185  QILDHVWNYDFRGDDNIVESYISYLRRKVDNVEPRLIHTLRGVGYVLRKP  234


>gi|237784979|ref|YP_002905684.1| two-component system response regulator [Corynebacterium kroppenstedtii 
DSM 44385]
 gi|237757891|gb|ACR17141.1| two-component system, response regulator [Corynebacterium kroppenstedtii 
DSM 44385]
Length=234

 Score =  313 bits (803),  Expect = 1e-83, Method: Compositional matrix adjust.
 Identities = 158/226 (70%), Positives = 182/226 (81%), Gaps = 1/226 (0%)

Query  22   RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGFG  81
            RVLVVDDEANIVELL VSLKFQGFEV TA++G +ALD AR   PDA ILDVMMP MDGF 
Sbjct  9    RVLVVDDEANIVELLKVSLKFQGFEVATASDGGEALDIARSFHPDAFILDVMMPRMDGFT  68

Query  82   VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK  141
            +L +LRADG DAP LFLTA+D++ D+I GLT+G DDYVTKPFSLEEVV RL+VILRR   
Sbjct  69   LLSKLRADGHDAPVLFLTAKDAVDDRIHGLTIGADDYVTKPFSLEEVVTRLKVILRRVSP  128

Query  142  GNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH  201
               +  + R+T+AD+ LD+ +HEV KAG+ V LSPTEF LLRY ++NA  VLSK KILDH
Sbjct  129  PEVDD-DQRITYADLTLDDNSHEVTKAGEYVDLSPTEFKLLRYLMVNAEVVLSKAKILDH  187

Query  202  VWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  247
            VW YDFGGD NVVESYVSYLRRK+D  E  L+ T+RGVGYVLR PR
Sbjct  188  VWNYDFGGDGNVVESYVSYLRRKVDKDEPHLIQTVRGVGYVLRTPR  233


>gi|336324700|ref|YP_004604666.1| two-component system response regulator [Corynebacterium resistens 
DSM 45100]
 gi|336100682|gb|AEI08502.1| two-component system response regulator [Corynebacterium resistens 
DSM 45100]
Length=235

 Score =  313 bits (803),  Expect = 1e-83, Method: Compositional matrix adjust.
 Identities = 155/227 (69%), Positives = 184/227 (82%), Gaps = 1/227 (0%)

Query  21   ARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGF  80
             +VLVVDDEANI +LL VSLKFQGF+V TA +G  ALD   E +PDA ILDVMMPGMDGF
Sbjct  9    TKVLVVDDEANISDLLKVSLKFQGFDVETADSGQAALDIVDEYQPDAFILDVMMPGMDGF  68

Query  81   GVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAG  140
             +L +LRA G DAP LFLTA+D ++D+I GLT+G DDYVTKPFSLEEV+ RLRVILRR  
Sbjct  69   SLLNKLRAKGHDAPVLFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVS  128

Query  141  KGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILD  200
              +++  NV +++ D+ LD++ HEV KAG+ V LSPTEF LLRY ++NA  VLSK KILD
Sbjct  129  PEDEKESNV-ISYEDLTLDDDMHEVTKAGKVVDLSPTEFKLLRYLMVNAEVVLSKAKILD  187

Query  201  HVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  247
            HVW YDFGGD NVVESYVSYLRRKIDT + RL+HT+RGVGYVLR+PR
Sbjct  188  HVWNYDFGGDGNVVESYVSYLRRKIDTDDPRLIHTVRGVGYVLRKPR  234


>gi|238060857|ref|ZP_04605566.1| winged helix family two-component system transcriptional regulator 
[Micromonospora sp. ATCC 39149]
 gi|237882668|gb|EEP71496.1| winged helix family two-component system transcriptional regulator 
[Micromonospora sp. ATCC 39149]
Length=233

 Score =  312 bits (800),  Expect = 2e-83, Method: Compositional matrix adjust.
 Identities = 152/230 (67%), Positives = 185/230 (81%), Gaps = 2/230 (0%)

Query  17   TTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPG  76
            T  EAR+LVV+D+ NI+ELLS SL+F GF+V TAT+G+ AL+ A++ RPD V+LDVM+P 
Sbjct  4    TQTEARLLVVEDDPNILELLSASLRFAGFDVATATSGSAALNAAKDHRPDLVVLDVMLPD  63

Query  77   MDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVIL  136
            +DGF V+R LR  G   P +FLTARD+  DKI GLTLGGDDYVTKPFSLEE+ AR+R +L
Sbjct  64   LDGFEVIRMLREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVL  123

Query  137  RRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKP  196
            RR   G++ P   RLTFAD+ELDEETHEV +AGQ V LSPTEF LLRY ++NA  VLSK 
Sbjct  124  RRTANGDQAPS--RLTFADLELDEETHEVHRAGQRVQLSPTEFKLLRYLMLNANRVLSKA  181

Query  197  KILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREP  246
            +ILDHVW YDF GD N+VESY+SYLRRK+D  + RL+HTLRGVGYVLR+P
Sbjct  182  QILDHVWNYDFRGDDNIVESYISYLRRKVDNTQPRLIHTLRGVGYVLRKP  231


>gi|145296603|ref|YP_001139424.1| hypothetical protein cgR_2511 [Corynebacterium glutamicum R]
 gi|140846523|dbj|BAF55522.1| hypothetical protein [Corynebacterium glutamicum R]
Length=240

 Score =  312 bits (800),  Expect = 2e-83, Method: Compositional matrix adjust.
 Identities = 153/228 (68%), Positives = 187/228 (83%), Gaps = 1/228 (0%)

Query  20   EARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDG  79
            + RVLVVDDE NIVELL+VSLKFQGF V TA +G +AL  ARE RPDA ILDVMMPGMDG
Sbjct  13   QIRVLVVDDEPNIVELLTVSLKFQGFAVMTANDGNEALKIAREFRPDAYILDVMMPGMDG  72

Query  80   FGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRA  139
            F +L +LR++G+D+P L+LTA+D+++ +I GLT+G DDYVTKPFSLEEV+ RLRVILRR 
Sbjct  73   FELLTKLRSEGLDSPVLYLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRRG  132

Query  140  GKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKIL  199
            G   +E  +  L +AD+ L++ETHEV KAG+ + LSPTEF LLRY ++NA  VLSK KIL
Sbjct  133  G-AVEEDTSTSLQYADLTLNDETHEVTKAGELIDLSPTEFNLLRYLMLNAEVVLSKAKIL  191

Query  200  DHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  247
            D+VW YDFGGD NVVESY+SYLRRK+DT E +L+ T+RGVGYVLR PR
Sbjct  192  DNVWHYDFGGDGNVVESYISYLRRKVDTQEPQLIQTVRGVGYVLRTPR  239


>gi|227502103|ref|ZP_03932152.1| response regulator [Corynebacterium accolens ATCC 49725]
 gi|306836868|ref|ZP_07469824.1| response regulator [Corynebacterium accolens ATCC 49726]
 gi|227077162|gb|EEI15125.1| response regulator [Corynebacterium accolens ATCC 49725]
 gi|304567240|gb|EFM42849.1| response regulator [Corynebacterium accolens ATCC 49726]
Length=234

 Score =  312 bits (799),  Expect = 3e-83, Method: Compositional matrix adjust.
 Identities = 148/227 (66%), Positives = 182/227 (81%), Gaps = 0/227 (0%)

Query  21   ARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGF  80
            A+VLVVDDE NIVELL+VSLKFQ FEVY+A +G +AL  ARE  PDA ILDVMMPGMDGF
Sbjct  7    AKVLVVDDEPNIVELLTVSLKFQNFEVYSANSGNEALRVAREVNPDAYILDVMMPGMDGF  66

Query  81   GVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAG  140
             +L +LR +G+D P L+LTA+D +  +I GLT+G DDYVTKPFSLEEV+ RLRVI+RR G
Sbjct  67   ELLGKLRQEGLDGPVLYLTAKDGVDQRIHGLTIGADDYVTKPFSLEEVITRLRVIMRRGG  126

Query  141  KGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILD  200
               +   +  +++AD+ L+++THEV K G+ + LSPTEF LLRY + N   VLSK KILD
Sbjct  127  AAEESSNDATMSYADLTLNDDTHEVTKGGELIELSPTEFNLLRYLMQNKEVVLSKSKILD  186

Query  201  HVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREPR  247
            +VW YDFGGD NVVESY+SYLRRKIDTG+ +L+HT+RGVGYVLR PR
Sbjct  187  NVWHYDFGGDGNVVESYISYLRRKIDTGDTQLIHTVRGVGYVLRTPR  233



Lambda     K      H
   0.320    0.139    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 349499277540




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40