BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0767c
Length=213
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607907|ref|NP_215281.1| hypothetical protein Rv0767c [Mycob... 426 8e-118
gi|340625786|ref|YP_004744238.1| hypothetical protein MCAN_07711... 416 1e-114
gi|308231629|ref|ZP_07413222.2| hypothetical protein TMAG_03781 ... 385 2e-105
gi|253797713|ref|YP_003030714.1| hypothetical protein TBMG_00782... 361 4e-98
gi|296166487|ref|ZP_06848918.1| TetR family transcriptional regu... 309 2e-82
gi|240171681|ref|ZP_04750340.1| transcriptional regulator, TetR ... 309 2e-82
gi|183984897|ref|YP_001853188.1| hypothetical protein MMAR_4929 ... 300 1e-79
gi|254818456|ref|ZP_05223457.1| transcriptional regulator, TetR ... 283 1e-74
gi|342862191|ref|ZP_08718833.1| TetR family transcriptional regu... 281 4e-74
gi|41406699|ref|NP_959535.1| hypothetical protein MAP0601c [Myco... 277 6e-73
gi|333992241|ref|YP_004524855.1| hypothetical protein JDM601_360... 271 7e-71
gi|118470238|ref|YP_890087.1| TetR family transcriptional regula... 256 1e-66
gi|108801542|ref|YP_641739.1| TetR family transcriptional regula... 246 2e-63
gi|126437527|ref|YP_001073218.1| TetR family transcriptional reg... 245 3e-63
gi|169628310|ref|YP_001701959.1| TetR family transcriptional reg... 242 3e-62
gi|120406106|ref|YP_955935.1| TetR family transcriptional regula... 231 7e-59
gi|145222191|ref|YP_001132869.1| TetR family transcriptional reg... 229 2e-58
gi|118616318|ref|YP_904650.1| hypothetical protein MUL_0476 [Myc... 187 7e-46
gi|296164745|ref|ZP_06847309.1| TetR family transcriptional regu... 159 3e-37
gi|118462748|ref|YP_882144.1| TetR family transcriptional regula... 158 5e-37
gi|183982649|ref|YP_001850940.1| hypothetical protein MMAR_2639 ... 158 5e-37
gi|41407577|ref|NP_960413.1| hypothetical protein MAP1479c [Myco... 158 5e-37
gi|342861341|ref|ZP_08717989.1| hypothetical protein MCOL_20756 ... 157 1e-36
gi|333991639|ref|YP_004524253.1| hypothetical protein JDM601_299... 156 2e-36
gi|254818839|ref|ZP_05223840.1| hypothetical protein MintA_02884... 155 4e-36
gi|240170327|ref|ZP_04748986.1| hypothetical protein MkanA1_1352... 149 2e-34
gi|226364177|ref|YP_002781959.1| TetR family transcriptional reg... 149 3e-34
gi|111021640|ref|YP_704612.1| TetR family transcriptional regula... 147 1e-33
gi|336457632|gb|EGO36636.1| transcriptional regulator, tetR fami... 147 1e-33
gi|118618490|ref|YP_906822.1| hypothetical protein MUL_3114 [Myc... 146 2e-33
gi|229492660|ref|ZP_04386461.1| transcriptional regulator, TetR ... 142 2e-32
gi|226306848|ref|YP_002766808.1| TetR family transcriptional reg... 142 3e-32
gi|312138347|ref|YP_004005683.1| tetr family transcriptional reg... 140 1e-31
gi|226306867|ref|YP_002766827.1| TetR family transcriptional reg... 139 2e-31
gi|319950415|ref|ZP_08024331.1| putative TetR family transcripti... 138 5e-31
gi|229492756|ref|ZP_04386557.1| transcriptional regulator, TetR ... 136 2e-30
gi|54026631|ref|YP_120873.1| putative transcriptional regulator ... 131 5e-29
gi|325676488|ref|ZP_08156166.1| TetR family transcriptional regu... 130 2e-28
gi|312138812|ref|YP_004006148.1| tetr family transcriptional reg... 128 5e-28
gi|118471670|ref|YP_890693.1| transcriptional regulator [Mycobac... 125 3e-27
gi|315446568|ref|YP_004079447.1| TetR family transcriptional reg... 125 3e-27
gi|326331692|ref|ZP_08197980.1| transcriptional regulator, TetR ... 123 2e-26
gi|54024543|ref|YP_118785.1| putative transcriptional regulator ... 119 4e-25
gi|326383325|ref|ZP_08205013.1| tetr family transcriptional regu... 118 6e-25
gi|120406656|ref|YP_956485.1| TetR family transcriptional regula... 115 3e-24
gi|262203709|ref|YP_003274917.1| TetR family transcriptional reg... 114 9e-24
gi|108802058|ref|YP_642255.1| TetR family transcriptional regula... 114 1e-23
gi|343927850|ref|ZP_08767318.1| putative TetR family transcripti... 113 2e-23
gi|126434312|ref|YP_001070003.1| TetR family transcriptional reg... 112 2e-23
gi|326384241|ref|ZP_08205923.1| regulatory protein TetR [Gordoni... 112 4e-23
>gi|15607907|ref|NP_215281.1| hypothetical protein Rv0767c [Mycobacterium tuberculosis H37Rv]
gi|15840182|ref|NP_335219.1| TetR family transcriptional regulator [Mycobacterium tuberculosis
CDC1551]
gi|31791955|ref|NP_854448.1| hypothetical protein Mb0790c [Mycobacterium bovis AF2122/97]
54 more sequence titles
Length=213
Score = 426 bits (1096), Expect = 8e-118, Method: Compositional matrix adjust.
Identities = 212/213 (99%), Positives = 213/213 (100%), Gaps = 0/213 (0%)
Query 1 VSSDVLVTTPAQRQTEPHAEAVSRNRRQQATFRKVLAAAMATLREKSYADLTVRLVAARA 60
+SSDVLVTTPAQRQTEPHAEAVSRNRRQQATFRKVLAAAMATLREKSYADLTVRLVAARA
Sbjct 1 MSSDVLVTTPAQRQTEPHAEAVSRNRRQQATFRKVLAAAMATLREKSYADLTVRLVAARA 60
Query 61 KVAPATAYTYFSSKNHLIAEVYLDLVRQVPCVTDVNVPMPIRVTSSLRHLALVVADEPEI 120
KVAPATAYTYFSSKNHLIAEVYLDLVRQVPCVTDVNVPMPIRVTSSLRHLALVVADEPEI
Sbjct 61 KVAPATAYTYFSSKNHLIAEVYLDLVRQVPCVTDVNVPMPIRVTSSLRHLALVVADEPEI 120
Query 121 GAACTAALLDGGADPAVRAVRDRIGAEIHRRITSAIGPGADPGTVFALEMAFFGALVQAG 180
GAACTAALLDGGADPAVRAVRDRIGAEIHRRITSAIGPGADPGTVFALEMAFFGALVQAG
Sbjct 121 GAACTAALLDGGADPAVRAVRDRIGAEIHRRITSAIGPGADPGTVFALEMAFFGALVQAG 180
Query 181 SGTFTYHEIADRLGYVVGLILAGANEPSTGGSE 213
SGTFTYHEIADRLGYVVGLILAGANEPSTGGSE
Sbjct 181 SGTFTYHEIADRLGYVVGLILAGANEPSTGGSE 213
>gi|340625786|ref|YP_004744238.1| hypothetical protein MCAN_07711 [Mycobacterium canettii CIPT
140010059]
gi|340003976|emb|CCC43111.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=213
Score = 416 bits (1070), Expect = 1e-114, Method: Compositional matrix adjust.
Identities = 206/212 (98%), Positives = 209/212 (99%), Gaps = 0/212 (0%)
Query 1 VSSDVLVTTPAQRQTEPHAEAVSRNRRQQATFRKVLAAAMATLREKSYADLTVRLVAARA 60
+SSDVLVTTP QRQTEPH EAVSRNRRQQATFRKVLAAAMATLREKSYADLTVRLVAARA
Sbjct 1 MSSDVLVTTPTQRQTEPHTEAVSRNRRQQATFRKVLAAAMATLREKSYADLTVRLVAARA 60
Query 61 KVAPATAYTYFSSKNHLIAEVYLDLVRQVPCVTDVNVPMPIRVTSSLRHLALVVADEPEI 120
KVAPATAYTYFSSKNHLIAEVYLDLVRQVPCVTDVNVPMP RVTSSLRHLALVVADEPEI
Sbjct 61 KVAPATAYTYFSSKNHLIAEVYLDLVRQVPCVTDVNVPMPTRVTSSLRHLALVVADEPEI 120
Query 121 GAACTAALLDGGADPAVRAVRDRIGAEIHRRITSAIGPGADPGTVFALEMAFFGALVQAG 180
GAACTAALLDGGADPAVRAVRDRIGAEIHRRITSAIGPGA+PGTVFALEMAFFGALVQAG
Sbjct 121 GAACTAALLDGGADPAVRAVRDRIGAEIHRRITSAIGPGAEPGTVFALEMAFFGALVQAG 180
Query 181 SGTFTYHEIADRLGYVVGLILAGANEPSTGGS 212
SGTFTYHEIADRLGYVVGLILAGANEPSTGG+
Sbjct 181 SGTFTYHEIADRLGYVVGLILAGANEPSTGGN 212
>gi|308231629|ref|ZP_07413222.2| hypothetical protein TMAG_03781 [Mycobacterium tuberculosis SUMu001]
gi|308369966|ref|ZP_07419721.2| hypothetical protein TMBG_03317 [Mycobacterium tuberculosis SUMu002]
gi|308370490|ref|ZP_07421749.2| hypothetical protein TMCG_03879 [Mycobacterium tuberculosis SUMu003]
21 more sequence titles
Length=192
Score = 385 bits (990), Expect = 2e-105, Method: Compositional matrix adjust.
Identities = 191/192 (99%), Positives = 192/192 (100%), Gaps = 0/192 (0%)
Query 22 VSRNRRQQATFRKVLAAAMATLREKSYADLTVRLVAARAKVAPATAYTYFSSKNHLIAEV 81
+SRNRRQQATFRKVLAAAMATLREKSYADLTVRLVAARAKVAPATAYTYFSSKNHLIAEV
Sbjct 1 MSRNRRQQATFRKVLAAAMATLREKSYADLTVRLVAARAKVAPATAYTYFSSKNHLIAEV 60
Query 82 YLDLVRQVPCVTDVNVPMPIRVTSSLRHLALVVADEPEIGAACTAALLDGGADPAVRAVR 141
YLDLVRQVPCVTDVNVPMPIRVTSSLRHLALVVADEPEIGAACTAALLDGGADPAVRAVR
Sbjct 61 YLDLVRQVPCVTDVNVPMPIRVTSSLRHLALVVADEPEIGAACTAALLDGGADPAVRAVR 120
Query 142 DRIGAEIHRRITSAIGPGADPGTVFALEMAFFGALVQAGSGTFTYHEIADRLGYVVGLIL 201
DRIGAEIHRRITSAIGPGADPGTVFALEMAFFGALVQAGSGTFTYHEIADRLGYVVGLIL
Sbjct 121 DRIGAEIHRRITSAIGPGADPGTVFALEMAFFGALVQAGSGTFTYHEIADRLGYVVGLIL 180
Query 202 AGANEPSTGGSE 213
AGANEPSTGGSE
Sbjct 181 AGANEPSTGGSE 192
>gi|253797713|ref|YP_003030714.1| hypothetical protein TBMG_00782 [Mycobacterium tuberculosis KZN
1435]
gi|253319216|gb|ACT23819.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
1435]
Length=204
Score = 361 bits (926), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 181/182 (99%), Positives = 182/182 (100%), Gaps = 0/182 (0%)
Query 1 VSSDVLVTTPAQRQTEPHAEAVSRNRRQQATFRKVLAAAMATLREKSYADLTVRLVAARA 60
+SSDVLVTTPAQRQTEPHAEAVSRNRRQQATFRKVLAAAMATLREKSYADLTVRLVAARA
Sbjct 1 MSSDVLVTTPAQRQTEPHAEAVSRNRRQQATFRKVLAAAMATLREKSYADLTVRLVAARA 60
Query 61 KVAPATAYTYFSSKNHLIAEVYLDLVRQVPCVTDVNVPMPIRVTSSLRHLALVVADEPEI 120
KVAPATAYTYFSSKNHLIAEVYLDLVRQVPCVTDVNVPMPIRVTSSLRHLALVVADEPEI
Sbjct 61 KVAPATAYTYFSSKNHLIAEVYLDLVRQVPCVTDVNVPMPIRVTSSLRHLALVVADEPEI 120
Query 121 GAACTAALLDGGADPAVRAVRDRIGAEIHRRITSAIGPGADPGTVFALEMAFFGALVQAG 180
GAACTAALLDGGADPAVRAVRDRIGAEIHRRITSAIGPGADPGTVFALEMAFFGALVQAG
Sbjct 121 GAACTAALLDGGADPAVRAVRDRIGAEIHRRITSAIGPGADPGTVFALEMAFFGALVQAG 180
Query 181 SG 182
SG
Sbjct 181 SG 182
>gi|296166487|ref|ZP_06848918.1| TetR family transcriptional regulator [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295898099|gb|EFG77674.1| TetR family transcriptional regulator [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=212
Score = 309 bits (792), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 162/210 (78%), Positives = 173/210 (83%), Gaps = 6/210 (2%)
Query 1 VSSDVLV--TTPAQRQTEPHAEAVSRNRRQQATFRKVLAAAMATLREKSYADLTVRLVAA 58
+SSD LV T+ A+ QT A RNRRQ+ TFRKVLAA + TLREKSYADLTVR+VAA
Sbjct 1 MSSDALVATTSHAEEQTGRPA----RNRRQEETFRKVLAAGIETLREKSYADLTVRVVAA 56
Query 59 RAKVAPATAYTYFSSKNHLIAEVYLDLVRQVPCVTDVNVPMPIRVTSSLRHLALVVADEP 118
RAKVAPATAYTYFSSKNHLIAEVYLDLVRQVP TDVN PMP RV LRHLA+VVADEP
Sbjct 57 RAKVAPATAYTYFSSKNHLIAEVYLDLVRQVPYFTDVNDPMPTRVEQVLRHLAVVVADEP 116
Query 119 EIGAACTAALLDGGADPAVRAVRDRIGAEIHRRITSAIGPGADPGTVFALEMAFFGALVQ 178
E+ AACT ALL GGA+PAVRA RDRIGAEIHRRITSA+GP ADP V ALEM+FFGALVQ
Sbjct 117 EVSAACTTALLSGGAEPAVRAARDRIGAEIHRRITSAMGPDADPTAVSALEMSFFGALVQ 176
Query 179 AGSGTFTYHEIADRLGYVVGLILAGANEPS 208
AGSG FTY EIADRL YVV LIL GA E S
Sbjct 177 AGSGEFTYREIADRLAYVVRLILTGAKETS 206
>gi|240171681|ref|ZP_04750340.1| transcriptional regulator, TetR family protein [Mycobacterium
kansasii ATCC 12478]
Length=208
Score = 309 bits (791), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 161/209 (78%), Positives = 173/209 (83%), Gaps = 8/209 (3%)
Query 1 VSSDVLVTTPAQRQTEPHAEAVS---RNRRQQATFRKVLAAAMATLREKSYADLTVRLVA 57
+SSD LV T+ A+AV RNRRQ+ TFRKVLAA M TLRE SY DLTVR+VA
Sbjct 1 MSSDALVAV-----TDRAAQAVDDRPRNRRQEETFRKVLAAGMQTLRENSYTDLTVRMVA 55
Query 58 ARAKVAPATAYTYFSSKNHLIAEVYLDLVRQVPCVTDVNVPMPIRVTSSLRHLALVVADE 117
ARAKVAPATAYTYFSSKNHLIAEVYLDLVRQVP TDVNVPMP+RV +LRHLALVVADE
Sbjct 56 ARAKVAPATAYTYFSSKNHLIAEVYLDLVRQVPYFTDVNVPMPVRVDQALRHLALVVADE 115
Query 118 PEIGAACTAALLDGGADPAVRAVRDRIGAEIHRRITSAIGPGADPGTVFALEMAFFGALV 177
PE+GAACT ALL GGADPAVRA R+RIG EIHRRI SAIGPGA+P TV AL+MAFFGALV
Sbjct 116 PEVGAACTTALLGGGADPAVRAARERIGVEIHRRIASAIGPGAEPTTVSALQMAFFGALV 175
Query 178 QAGSGTFTYHEIADRLGYVVGLILAGANE 206
QAGSG FTYHEIADRL V LILAGA +
Sbjct 176 QAGSGEFTYHEIADRLADAVRLILAGAEK 204
>gi|183984897|ref|YP_001853188.1| hypothetical protein MMAR_4929 [Mycobacterium marinum M]
gi|183178223|gb|ACC43333.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=222
Score = 300 bits (767), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 156/210 (75%), Positives = 170/210 (81%), Gaps = 2/210 (0%)
Query 1 VSSDVLVTTPAQRQTEPHAEAVSRNRRQQATFRKVLAAAMATLREKSYADLTVRLVAARA 60
+SSD LVT Q+Q E RNRRQ+ TFR+VLAA M TLR SY DLTVR+VAARA
Sbjct 1 MSSDALVTVTDQQQHESGDR--RRNRRQEETFRRVLAAGMDTLRASSYPDLTVRMVAARA 58
Query 61 KVAPATAYTYFSSKNHLIAEVYLDLVRQVPCVTDVNVPMPIRVTSSLRHLALVVADEPEI 120
V+PATAYTYFSSKNHLIAEVYLDLVR+VP TDVNV M RV +LRHLALVVADEPE+
Sbjct 59 GVSPATAYTYFSSKNHLIAEVYLDLVRKVPFFTDVNVAMRDRVVQALRHLALVVADEPEV 118
Query 121 GAACTAALLDGGADPAVRAVRDRIGAEIHRRITSAIGPGADPGTVFALEMAFFGALVQAG 180
GAACTAALL GGADPAVRAVRD+IGAEIHRRI SAIGPGA PGT+ ALEMAFFGALV AG
Sbjct 119 GAACTAALLGGGADPAVRAVRDQIGAEIHRRIASAIGPGAQPGTIAALEMAFFGALVHAG 178
Query 181 SGTFTYHEIADRLGYVVGLILAGANEPSTG 210
SG FTYHE+ADRL V LIL GA + + G
Sbjct 179 SGEFTYHEVADRLADVAVLILVGAGQAAPG 208
>gi|254818456|ref|ZP_05223457.1| transcriptional regulator, TetR family protein [Mycobacterium
intracellulare ATCC 13950]
Length=212
Score = 283 bits (724), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 160/209 (77%), Positives = 170/209 (82%), Gaps = 5/209 (2%)
Query 1 VSSDVL-VTTPAQRQTEPHAEAVSRNRRQQATFRKVLAAAMATLREKSYADLTVRLVAAR 59
+SSD L +T+ A RQT RNRRQ+ TFRKVLAA + TLREKSYADLTVR VAAR
Sbjct 1 MSSDALAITSDADRQTG----QTPRNRRQEETFRKVLAAGIETLREKSYADLTVRAVAAR 56
Query 60 AKVAPATAYTYFSSKNHLIAEVYLDLVRQVPCVTDVNVPMPIRVTSSLRHLALVVADEPE 119
AKVAPATAYTYFSSKNHLIAEVYLDLVRQVP TDVN PMP RV LRHLALVVADEPE
Sbjct 57 AKVAPATAYTYFSSKNHLIAEVYLDLVRQVPYFTDVNDPMPSRVEQVLRHLALVVADEPE 116
Query 120 IGAACTAALLDGGADPAVRAVRDRIGAEIHRRITSAIGPGADPGTVFALEMAFFGALVQA 179
+ AACT ALL GGADPAVRA RDRIG EIHRRITSA+GP ADP TV ALEM+FFGALVQ
Sbjct 117 VSAACTTALLSGGADPAVRAARDRIGVEIHRRITSAMGPNADPTTVSALEMSFFGALVQG 176
Query 180 GSGTFTYHEIADRLGYVVGLILAGANEPS 208
GSG F+Y EIADRL YVV LIL GA + S
Sbjct 177 GSGEFSYREIADRLAYVVRLILTGAKDTS 205
>gi|342862191|ref|ZP_08718833.1| TetR family transcriptional regulator [Mycobacterium colombiense
CECT 3035]
gi|342130269|gb|EGT83589.1| TetR family transcriptional regulator [Mycobacterium colombiense
CECT 3035]
Length=211
Score = 281 bits (719), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 161/211 (77%), Positives = 172/211 (82%), Gaps = 8/211 (3%)
Query 1 VSSDVLVT--TPAQRQT-EPHAEAVSRNRRQQATFRKVLAAAMATLREKSYADLTVRLVA 57
+SSD LVT + RQT +P +RNRRQ+ TFRKVL A + TLREKSYADLTVR VA
Sbjct 1 MSSDALVTITSDGDRQTGQP-----ARNRRQEETFRKVLVAGIETLREKSYADLTVRAVA 55
Query 58 ARAKVAPATAYTYFSSKNHLIAEVYLDLVRQVPCVTDVNVPMPIRVTSSLRHLALVVADE 117
ARAKVAPATAYTYFSSKNHLIAEVYLDLVRQVP TDVN PMP+RV LRHLALVVADE
Sbjct 56 ARAKVAPATAYTYFSSKNHLIAEVYLDLVRQVPFFTDVNDPMPVRVDKVLRHLALVVADE 115
Query 118 PEIGAACTAALLDGGADPAVRAVRDRIGAEIHRRITSAIGPGADPGTVFALEMAFFGALV 177
PE+GAACT ALL GGADPAV AVRDRIGAEIHRRI +AIGPGADP TV ALEM FFGALV
Sbjct 116 PEVGAACTTALLGGGADPAVGAVRDRIGAEIHRRIATAIGPGADPKTVAALEMMFFGALV 175
Query 178 QAGSGTFTYHEIADRLGYVVGLILAGANEPS 208
QA SG FTYH+IAD+L YVV LIL G S
Sbjct 176 QAASGQFTYHQIADQLAYVVSLILPGPGNTS 206
>gi|41406699|ref|NP_959535.1| hypothetical protein MAP0601c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118463659|ref|YP_879986.1| TetR family transcriptional regulator [Mycobacterium avium 104]
gi|254773650|ref|ZP_05215166.1| transcriptional regulator, TetR family protein [Mycobacterium
avium subsp. avium ATCC 25291]
gi|41395049|gb|AAS02918.1| hypothetical protein MAP_0601c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118164946|gb|ABK65843.1| transcriptional regulator, TetR family protein [Mycobacterium
avium 104]
gi|336458363|gb|EGO37341.1| transcriptional regulator [Mycobacterium avium subsp. paratuberculosis
S397]
Length=215
Score = 277 bits (709), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 157/208 (76%), Positives = 167/208 (81%), Gaps = 2/208 (0%)
Query 1 VSSDVLVTTPAQRQTEPHAEAVSRNRRQQATFRKVLAAAMATLREKSYADLTVRLVAARA 60
+SSD LVT + E RNRRQ+ TFRKVLAA + TLREKSY+DLTVR VAARA
Sbjct 1 MSSDALVTITSDAGGETGQPP--RNRRQEETFRKVLAAGIETLREKSYSDLTVRAVAARA 58
Query 61 KVAPATAYTYFSSKNHLIAEVYLDLVRQVPCVTDVNVPMPIRVTSSLRHLALVVADEPEI 120
KVAPATAYTYFSSKNHLIAEVYLDLVRQVP TDVN PMP RV LRHLALVVADEPE+
Sbjct 59 KVAPATAYTYFSSKNHLIAEVYLDLVRQVPYFTDVNDPMPTRVEQVLRHLALVVADEPEV 118
Query 121 GAACTAALLDGGADPAVRAVRDRIGAEIHRRITSAIGPGADPGTVFALEMAFFGALVQAG 180
AACT ALL GGADPAVRA RDRIG EIHRRITSA+GP ADP TV ALEM+FFGALVQAG
Sbjct 119 SAACTTALLSGGADPAVRAARDRIGVEIHRRITSAMGPDADPTTVSALEMSFFGALVQAG 178
Query 181 SGTFTYHEIADRLGYVVGLILAGANEPS 208
SG F+Y EIADRL YVV LIL G + S
Sbjct 179 SGEFSYREIADRLAYVVRLILTGTTQAS 206
>gi|333992241|ref|YP_004524855.1| hypothetical protein JDM601_3601 [Mycobacterium sp. JDM601]
gi|333488209|gb|AEF37601.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=207
Score = 271 bits (692), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 146/179 (82%), Positives = 152/179 (85%), Gaps = 0/179 (0%)
Query 23 SRNRRQQATFRKVLAAAMATLREKSYADLTVRLVAARAKVAPATAYTYFSSKNHLIAEVY 82
+RNRRQ+ TFRKVL A + LREKSYADLTVR VAARAKVAPATAYTYFSSKNHLIAEVY
Sbjct 23 TRNRRQEETFRKVLTAGVEMLREKSYADLTVRAVAARAKVAPATAYTYFSSKNHLIAEVY 82
Query 83 LDLVRQVPCVTDVNVPMPIRVTSSLRHLALVVADEPEIGAACTAALLDGGADPAVRAVRD 142
LDLVRQVP TDVN PMP RV +LRHLALVVADEPE+ AACTAALL G DPAVR VRD
Sbjct 83 LDLVRQVPYFTDVNEPMPSRVNQALRHLALVVADEPEVAAACTAALLSGSGDPAVRTVRD 142
Query 143 RIGAEIHRRITSAIGPGADPGTVFALEMAFFGALVQAGSGTFTYHEIADRLGYVVGLIL 201
RIGAEIHRRI SAIGPGADP V ALEM FFGALV AGSG FTYH+I DRL YVV LIL
Sbjct 143 RIGAEIHRRIVSAIGPGADPEKVSALEMTFFGALVNAGSGAFTYHQITDRLSYVVSLIL 201
>gi|118470238|ref|YP_890087.1| TetR family transcriptional regulator [Mycobacterium smegmatis
str. MC2 155]
gi|118171525|gb|ABK72421.1| transcriptional regulator, TetR family protein [Mycobacterium
smegmatis str. MC2 155]
Length=199
Score = 256 bits (655), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 142/185 (77%), Positives = 150/185 (82%), Gaps = 0/185 (0%)
Query 17 PHAEAVSRNRRQQATFRKVLAAAMATLREKSYADLTVRLVAARAKVAPATAYTYFSSKNH 76
P RNRRQ+ TFRKVL A + LRE SYADLTVR VAARAKVAPATAYTYFSSKNH
Sbjct 11 PSGGETPRNRRQEETFRKVLTAGIEMLRESSYADLTVRAVAARAKVAPATAYTYFSSKNH 70
Query 77 LIAEVYLDLVRQVPCVTDVNVPMPIRVTSSLRHLALVVADEPEIGAACTAALLDGGADPA 136
LIAEVYLDLVRQVP TDVN M RV +LR L LVVADEPE+ AACT ALL GG+D A
Sbjct 71 LIAEVYLDLVRQVPYFTDVNDSMKTRVDKALRALTLVVADEPEVAAACTTALLGGGSDEA 130
Query 137 VRAVRDRIGAEIHRRITSAIGPGADPGTVFALEMAFFGALVQAGSGTFTYHEIADRLGYV 196
VRAVRDRIGAEIH+RI SA+GP ADP TV ALEM FFGALV AGSG FTYH+IADRL YV
Sbjct 131 VRAVRDRIGAEIHKRIRSAVGPDADPRTVSALEMTFFGALVNAGSGAFTYHQIADRLTYV 190
Query 197 VGLIL 201
VGLIL
Sbjct 191 VGLIL 195
>gi|108801542|ref|YP_641739.1| TetR family transcriptional regulator [Mycobacterium sp. MCS]
gi|119870696|ref|YP_940648.1| TetR family transcriptional regulator [Mycobacterium sp. KMS]
gi|108771961|gb|ABG10683.1| transcriptional regulator, TetR family [Mycobacterium sp. MCS]
gi|119696785|gb|ABL93858.1| transcriptional regulator, TetR family [Mycobacterium sp. KMS]
Length=203
Score = 246 bits (627), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 136/188 (73%), Positives = 150/188 (80%), Gaps = 1/188 (0%)
Query 24 RNRRQQATFRKVLAAAMATLREKSYADLTVRLVAARAKVAPATAYTYFSSKNHLIAEVYL 83
RNRRQ+ TFRKVL+A + LRE SYADLTVR VAARA+VAPATAYTYFSSKNHLIAEVYL
Sbjct 14 RNRRQEETFRKVLSAGVEMLRESSYADLTVRAVAARARVAPATAYTYFSSKNHLIAEVYL 73
Query 84 DLVRQVPCVTDVNVPMPIRVTSSLRHLALVVADEPEIGAACTAALLDGGADPAVRAVRDR 143
DL+RQVP TDVN MP RV +LR + L++ADEPE+ AACT ALL +D AVR RDR
Sbjct 74 DLIRQVPYFTDVNDSMPTRVDKALRSMTLILADEPEVAAACTTALL-SNSDAAVRTARDR 132
Query 144 IGAEIHRRITSAIGPGADPGTVFALEMAFFGALVQAGSGTFTYHEIADRLGYVVGLILAG 203
IGAEIH+RITSAIGPGADP V ALEM FFGALV AGSG FTYHEIADRL YVVGL+L
Sbjct 133 IGAEIHKRITSAIGPGADPRKVSALEMTFFGALVNAGSGVFTYHEIADRLTYVVGLVLGE 192
Query 204 ANEPSTGG 211
+ G
Sbjct 193 DQMNKSSG 200
>gi|126437527|ref|YP_001073218.1| TetR family transcriptional regulator [Mycobacterium sp. JLS]
gi|126237327|gb|ABO00728.1| transcriptional regulator, TetR family [Mycobacterium sp. JLS]
Length=203
Score = 245 bits (625), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 135/178 (76%), Positives = 148/178 (84%), Gaps = 1/178 (0%)
Query 24 RNRRQQATFRKVLAAAMATLREKSYADLTVRLVAARAKVAPATAYTYFSSKNHLIAEVYL 83
RNRRQ+ TFRKVL+A + LRE SYADLTVR VAARA+VAPATAYTYFSSKNHLIAEVYL
Sbjct 14 RNRRQEETFRKVLSAGVEMLRESSYADLTVRAVAARARVAPATAYTYFSSKNHLIAEVYL 73
Query 84 DLVRQVPCVTDVNVPMPIRVTSSLRHLALVVADEPEIGAACTAALLDGGADPAVRAVRDR 143
DL+RQVP TDVN MP RV +LR + L++ADEPE+ AACT ALL +D AVR RDR
Sbjct 74 DLIRQVPYFTDVNDSMPTRVDKALRSMTLILADEPEVAAACTTALL-SNSDAAVRTARDR 132
Query 144 IGAEIHRRITSAIGPGADPGTVFALEMAFFGALVQAGSGTFTYHEIADRLGYVVGLIL 201
IGAEIH+RITSAIGPGADP V ALEM FFGALV AGSG FTYHEIADRL YVVGL+L
Sbjct 133 IGAEIHKRITSAIGPGADPRKVSALEMTFFGALVNAGSGVFTYHEIADRLTYVVGLVL 190
>gi|169628310|ref|YP_001701959.1| TetR family transcriptional regulator [Mycobacterium abscessus
ATCC 19977]
gi|169240277|emb|CAM61305.1| Putative transcriptional regulator, TetR family [Mycobacterium
abscessus]
Length=195
Score = 242 bits (617), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 121/185 (66%), Positives = 140/185 (76%), Gaps = 1/185 (0%)
Query 17 PHAEAVSRNRRQQATFRKVLAAAMATLREKSYADLTVRLVAARAKVAPATAYTYFSSKNH 76
P E RNRRQ+ T RK++ A L E +YAD+T+R VAARAKVAPATAYTYFSSK+H
Sbjct 8 PLTEETPRNRRQEETIRKIVTAGREMLGETTYADMTIRGVAARAKVAPATAYTYFSSKSH 67
Query 77 LIAEVYLDLVRQVPCVTDVNVPMPIRVTSSLRHLALVVADEPEIGAACTAALLDGGADPA 136
L+AE+YLDL+ + P TDVN RVT +LR LALVVADEPEI CT ALL D A
Sbjct 68 LVAEIYLDLIHEAPYFTDVNDTQAARVTKTLRSLALVVADEPEIATGCTTALLSNN-DEA 126
Query 137 VRAVRDRIGAEIHRRITSAIGPGADPGTVFALEMAFFGALVQAGSGTFTYHEIADRLGYV 196
VRAVRD+IG EIHRRI SA+GP ADP V ALEM FFGAL+ AGSGTFTYH+IAD+L +V
Sbjct 127 VRAVRDKIGLEIHRRIRSAMGPDADPRVVSALEMTFFGALMHAGSGTFTYHQIADKLTFV 186
Query 197 VGLIL 201
V L+L
Sbjct 187 VDLML 191
>gi|120406106|ref|YP_955935.1| TetR family transcriptional regulator [Mycobacterium vanbaalenii
PYR-1]
gi|119958924|gb|ABM15929.1| transcriptional regulator, TetR family [Mycobacterium vanbaalenii
PYR-1]
Length=198
Score = 231 bits (588), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 127/178 (72%), Positives = 144/178 (81%), Gaps = 1/178 (0%)
Query 24 RNRRQQATFRKVLAAAMATLREKSYADLTVRLVAARAKVAPATAYTYFSSKNHLIAEVYL 83
RNRRQ+ TFRKVLAA + LRE SYADLTVR VAARAKVAPATAYTYFSSKNHLIAE+YL
Sbjct 18 RNRRQEETFRKVLAAGLEMLRESSYADLTVRAVAARAKVAPATAYTYFSSKNHLIAEIYL 77
Query 84 DLVRQVPCVTDVNVPMPIRVTSSLRHLALVVADEPEIGAACTAALLDGGADPAVRAVRDR 143
L+ +V TDVN +RV +LR +AL++ADEPE+ AACT ALL G D AVR VR+R
Sbjct 78 SLITKVDYFTDVNDSTAVRVEKTLRSMALMIADEPEVAAACTTALLSGN-DAAVRTVRER 136
Query 144 IGAEIHRRITSAIGPGADPGTVFALEMAFFGALVQAGSGTFTYHEIADRLGYVVGLIL 201
IGAEIHRRI +A+GP DP T+ ALEM FFGALV AGSG FTYH+IADRL YVVGLI+
Sbjct 137 IGAEIHRRIRAAVGPDPDPRTLAALEMTFFGALVNAGSGAFTYHQIADRLSYVVGLIV 194
>gi|145222191|ref|YP_001132869.1| TetR family transcriptional regulator [Mycobacterium gilvum PYR-GCK]
gi|315442630|ref|YP_004075509.1| TetR family transcriptional regulator [Mycobacterium sp. Spyr1]
gi|145214677|gb|ABP44081.1| transcriptional regulator, TetR family [Mycobacterium gilvum
PYR-GCK]
gi|315260933|gb|ADT97674.1| transcriptional regulator, TetR family [Mycobacterium sp. Spyr1]
Length=198
Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 127/178 (72%), Positives = 144/178 (81%), Gaps = 1/178 (0%)
Query 24 RNRRQQATFRKVLAAAMATLREKSYADLTVRLVAARAKVAPATAYTYFSSKNHLIAEVYL 83
RNRRQ+ TFRKVLAA + LRE SYADLTVR VAARAKVAPATAYTYFSSKNHLIAE+YL
Sbjct 18 RNRRQEETFRKVLAAGLEMLRESSYADLTVRAVAARAKVAPATAYTYFSSKNHLIAEIYL 77
Query 84 DLVRQVPCVTDVNVPMPIRVTSSLRHLALVVADEPEIGAACTAALLDGGADPAVRAVRDR 143
+L++QV TDVN RV +LR +AL+VADEPE+ AACT ALL G D VR+VR+R
Sbjct 78 NLMQQVDYFTDVNDSTVTRVEKTLRSMALMVADEPEVAAACTTALLSGN-DATVRSVRER 136
Query 144 IGAEIHRRITSAIGPGADPGTVFALEMAFFGALVQAGSGTFTYHEIADRLGYVVGLIL 201
IG EIHRRI +A+GP DP T+ ALEM FFGALV AGSG FTYH+IADRL YVVGLI+
Sbjct 137 IGGEIHRRIRAAVGPDPDPRTLAALEMTFFGALVNAGSGAFTYHQIADRLSYVVGLIV 194
>gi|118616318|ref|YP_904650.1| hypothetical protein MUL_0476 [Mycobacterium ulcerans Agy99]
gi|118568428|gb|ABL03179.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=139
Score = 187 bits (476), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 95/125 (76%), Positives = 104/125 (84%), Gaps = 0/125 (0%)
Query 86 VRQVPCVTDVNVPMPIRVTSSLRHLALVVADEPEIGAACTAALLDGGADPAVRAVRDRIG 145
+R+VP TDVNV M RV +LRHLALVVADEPE+GAACTAALL GGADPAVRAVRD+IG
Sbjct 1 MRKVPFFTDVNVAMRDRVVQALRHLALVVADEPEVGAACTAALLGGGADPAVRAVRDQIG 60
Query 146 AEIHRRITSAIGPGADPGTVFALEMAFFGALVQAGSGTFTYHEIADRLGYVVGLILAGAN 205
AEIHRRI SAIGPGA PGT+ ALEMAFFGALV AGSG FTYHE+ADRL V LIL GA
Sbjct 61 AEIHRRIASAIGPGAQPGTIAALEMAFFGALVHAGSGKFTYHEVADRLADVAVLILVGAG 120
Query 206 EPSTG 210
+ + G
Sbjct 121 QAAPG 125
>gi|296164745|ref|ZP_06847309.1| TetR family transcriptional regulator [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295899916|gb|EFG79358.1| TetR family transcriptional regulator [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=187
Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/177 (52%), Positives = 120/177 (68%), Gaps = 4/177 (2%)
Query 25 NRRQQATFRKVLAAAMATLREKSYADLTVRLVAARAKVAPATAYTYFSSKNHLIAEVYLD 84
+RR T RKVL A + LRE S+ADLT+R VAARA V+PA+AYTYF SK+ L+A VYL
Sbjct 10 DRRPGQTIRKVLDAGLEELREASFADLTMRSVAARAGVSPASAYTYFPSKSALVAAVYLR 69
Query 85 LVRQVPCVTDVNVPMPIRVTSSLRHLALVVADEPEIGAACTAALLDGGADPAVRAVRDRI 144
+R++P TDVN RV+++LR +A+VVADEPE+ AAC AAL+ DPAV+ +R++I
Sbjct 70 FLRELPLHTDVNETTKTRVSATLRDMAVVVADEPELTAACGAALM--ADDPAVKPIREQI 127
Query 145 GAEIHRRITSAIGPGADPGTVFALEMAFFGALVQAGSGTFTYHEIADRLGYVVGLIL 201
G E+ RI +A+GPG L+M F GAL+ A +F EIA +L V LIL
Sbjct 128 GHEVATRIGAALGPGWPRAVKSTLQMTFSGALMTARFVSF--DEIAGQLEEAVNLIL 182
>gi|118462748|ref|YP_882144.1| TetR family transcriptional regulator [Mycobacterium avium 104]
gi|254775430|ref|ZP_05216946.1| transcriptional regulator, TetR family protein [Mycobacterium
avium subsp. avium ATCC 25291]
gi|118164035|gb|ABK64932.1| transcriptional regulator, TetR family protein [Mycobacterium
avium 104]
Length=201
Score = 158 bits (400), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 93/189 (50%), Positives = 121/189 (65%), Gaps = 4/189 (2%)
Query 17 PHAEAVSRNRRQQATFRKVLAAAMATLREKSYADLTVRLVAARAKVAPATAYTYFSSKNH 76
P A +RR T RKVL A + LRE SYA LT+R VA RA V+PA+AYTYF SK+
Sbjct 15 PTGPARRSDRRPGQTIRKVLDAGLQELRESSYAGLTMRAVATRAGVSPASAYTYFPSKSA 74
Query 77 LIAEVYLDLVRQVPCVTDVNVPMPIRVTSSLRHLALVVADEPEIGAACTAALLDGGADPA 136
L+A VYL +R +P TDVN RV+++LR +A+VVADEPE+ AAC AAL+ DPA
Sbjct 75 LVAAVYLRFLRDLPVHTDVNETAQRRVSATLRDMAVVVADEPELTAACGAALM--ADDPA 132
Query 137 VRAVRDRIGAEIHRRITSAIGPGADPGTVFALEMAFFGALVQAGSGTFTYHEIADRLGYV 196
V+ +R++IG E+ RRI +A+GPG L+M F GAL+ A +F EI+ +L
Sbjct 133 VKPLREQIGEEVSRRIAAALGPGWPRAVKSTLQMTFSGALMTARFVSFA--EISGQLDEA 190
Query 197 VGLILAGAN 205
V LIL A
Sbjct 191 VDLILGAAR 199
>gi|183982649|ref|YP_001850940.1| hypothetical protein MMAR_2639 [Mycobacterium marinum M]
gi|183175975|gb|ACC41085.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=215
Score = 158 bits (399), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 90/180 (50%), Positives = 119/180 (67%), Gaps = 4/180 (2%)
Query 25 NRRQQATFRKVLAAAMATLREKSYADLTVRLVAARAKVAPATAYTYFSSKNHLIAEVYLD 84
+RR T RKVL A + LR S+A+LT+R VAARA V+PA+AYTYF SK+ L+A VYL
Sbjct 38 DRRPAQTIRKVLEAGLDELRATSFANLTMRAVAARAGVSPASAYTYFPSKSALVAAVYLR 97
Query 85 LVRQVPCVTDVNVPMPIRVTSSLRHLALVVADEPEIGAACTAALLDGGADPAVRAVRDRI 144
L+R +P TDVN RV++++R +A+VVADEPE+ AAC AL+ DPAV+ +R +I
Sbjct 98 LLRDLPLHTDVNDTTKTRVSATMRDMAMVVADEPELTAACGTALM--ADDPAVQPLRAQI 155
Query 145 GAEIHRRITSAIGPGADPGTVFALEMAFFGALVQAGSGTFTYHEIADRLGYVVGLILAGA 204
G E+ RRI +A+GPG L+M F GAL+ A +Y EIA +L V LIL A
Sbjct 156 GEEVARRIGAALGPGWPRSVKSTLQMTFSGALMTA--RFLSYEEIAGQLDEAVNLILGAA 213
>gi|41407577|ref|NP_960413.1| hypothetical protein MAP1479c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41395930|gb|AAS03796.1| hypothetical protein MAP_1479c [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=198
Score = 158 bits (399), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 93/189 (50%), Positives = 121/189 (65%), Gaps = 4/189 (2%)
Query 17 PHAEAVSRNRRQQATFRKVLAAAMATLREKSYADLTVRLVAARAKVAPATAYTYFSSKNH 76
P A +RR T RKVL A + LRE SYA LT+R VA RA V+PA+AYTYF SK+
Sbjct 12 PTGPARRSDRRPGQTIRKVLDAGLQELRESSYAGLTMRAVATRAGVSPASAYTYFPSKSA 71
Query 77 LIAEVYLDLVRQVPCVTDVNVPMPIRVTSSLRHLALVVADEPEIGAACTAALLDGGADPA 136
L+A VYL +R +P TDVN RV+++LR +A+VVADEPE+ AAC AAL+ DPA
Sbjct 72 LVAAVYLRFLRDLPVHTDVNETAQRRVSATLRDMAVVVADEPELTAACGAALM--ADDPA 129
Query 137 VRAVRDRIGAEIHRRITSAIGPGADPGTVFALEMAFFGALVQAGSGTFTYHEIADRLGYV 196
V+ +R++IG E+ RRI +A+GPG L+M F GAL+ A +F EI+ +L
Sbjct 130 VKPLREQIGEEVSRRIAAALGPGWPRAVKSTLQMTFSGALMTARFVSFA--EISGQLDEA 187
Query 197 VGLILAGAN 205
V LIL A
Sbjct 188 VDLILGAAR 196
>gi|342861341|ref|ZP_08717989.1| hypothetical protein MCOL_20756 [Mycobacterium colombiense CECT
3035]
gi|342131241|gb|EGT84522.1| hypothetical protein MCOL_20756 [Mycobacterium colombiense CECT
3035]
Length=201
Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/177 (51%), Positives = 119/177 (68%), Gaps = 4/177 (2%)
Query 25 NRRQQATFRKVLAAAMATLREKSYADLTVRLVAARAKVAPATAYTYFSSKNHLIAEVYLD 84
+RR T RKVL A +A LRE SYA+LT+R VA RA V+PA+AYTYF SK+ L+A VYL
Sbjct 24 DRRPGQTIRKVLDAGLAELRESSYANLTMRAVATRAGVSPASAYTYFPSKSALVAAVYLR 83
Query 85 LVRQVPCVTDVNVPMPIRVTSSLRHLALVVADEPEIGAACTAALLDGGADPAVRAVRDRI 144
+R +P TDVN RV+++LR +A+VVADEPE+ AAC AAL+ DPAV +R++I
Sbjct 84 FLRDLPLHTDVNDTTKTRVSATLRDMAVVVADEPELTAACGAALM--ADDPAVAPLREQI 141
Query 145 GAEIHRRITSAIGPGADPGTVFALEMAFFGALVQAGSGTFTYHEIADRLGYVVGLIL 201
G E+ +RI +A+GPG L+M F GAL+ A +F EI+ +L V LIL
Sbjct 142 GEEVAKRIGAALGPGWPRSVKSTLQMTFSGALMTARFVSFA--EISGQLDEAVNLIL 196
>gi|333991639|ref|YP_004524253.1| hypothetical protein JDM601_2999 [Mycobacterium sp. JDM601]
gi|333487607|gb|AEF36999.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=189
Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/179 (48%), Positives = 118/179 (66%), Gaps = 2/179 (1%)
Query 27 RQQATFRKVLAAAMATLREKSYADLTVRLVAARAKVAPATAYTYFSSKNHLIAEVYLDLV 86
+Q T ++ AAM L + ++ LT+R+VAA A + ATAYTYFSSK HL+AE++ +
Sbjct 13 KQADTVERLSRAAMTVLGREGFSGLTIRMVAAEAGIGAATAYTYFSSKEHLVAEIFWRRL 72
Query 87 RQVPCVTDVNVPMPIRVTSSLRHLALVVADEPEIGAACTAALLDGGADPAVRAVRDRIGA 146
P T + IRV + LRH+AL+VADEPE+ A TAALL G+DP V +R RIG
Sbjct 73 ALTPAPTVDSPDRIIRVVTVLRHIALLVADEPELAGAVTAALL--GSDPDVEHLRRRIGT 130
Query 147 EIHRRITSAIGPGADPGTVFALEMAFFGALVQAGSGTFTYHEIADRLGYVVGLILAGAN 205
EIH R+ +A+GPG +P V +LE+ + GALV+AG G +Y +IADRL L+L+ A+
Sbjct 131 EIHDRLATAVGPGGEPDLVDSLELLYSGALVRAGMGYGSYQQIADRLEKSARLLLSAAS 189
>gi|254818839|ref|ZP_05223840.1| hypothetical protein MintA_02884 [Mycobacterium intracellulare
ATCC 13950]
Length=200
Score = 155 bits (392), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 88/171 (52%), Positives = 115/171 (68%), Gaps = 4/171 (2%)
Query 31 TFRKVLAAAMATLREKSYADLTVRLVAARAKVAPATAYTYFSSKNHLIAEVYLDLVRQVP 90
T RKVL A + LRE SYA+LT+R VA RA V+PA+AYTYF SK+ L+A VYL +R +P
Sbjct 29 TIRKVLDAGLEELRETSYANLTMRAVATRAGVSPASAYTYFPSKSALVAAVYLRFLRDLP 88
Query 91 CVTDVNVPMPIRVTSSLRHLALVVADEPEIGAACTAALLDGGADPAVRAVRDRIGAEIHR 150
TDVN RV+++LR +A+VVADEPE+ AAC AAL+ DPAV +R++IG E+ R
Sbjct 89 LHTDVNETTKTRVSATLRDMAVVVADEPELTAACGAALM--ADDPAVTPLREQIGEEVSR 146
Query 151 RITSAIGPGADPGTVFALEMAFFGALVQAGSGTFTYHEIADRLGYVVGLIL 201
RI +A+GPG L+M F GAL+ A ++ EIA +L V LIL
Sbjct 147 RIGAALGPGWPRAVKSTLQMTFSGALMTA--RFISFAEIAGQLDEAVNLIL 195
>gi|240170327|ref|ZP_04748986.1| hypothetical protein MkanA1_13523 [Mycobacterium kansasii ATCC
12478]
Length=205
Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/206 (43%), Positives = 116/206 (57%), Gaps = 11/206 (5%)
Query 7 VTTPAQRQTEPHAEAVSRNRRQQATFRKVLAAAMATLREKSYADLTVRLVAARAKVAPAT 66
V P QR+ R++R + + R++L AA+ L E YA+LTVR VAARA V+P T
Sbjct 10 VDRPIQRR---------RDKRAEQSVRRLLDAAVEELAESPYAELTVRGVAARAAVSPTT 60
Query 67 AYTYFSSKNHLIAEVYLDLVRQVPCVTDVNVPMPIRVTSSLRHLALVVADEPEIGAACTA 126
AYTYF SK+ LI EVYL L+ DVN RV + LR L L+VAD P + ACT
Sbjct 61 AYTYFKSKDTLIGEVYLRLLHDADTFVDVNDNAETRVKAQLRELLLLVADMPYLADACTT 120
Query 127 ALLDGGADPAVRAVRDRIGAEIHRRITSAIGPGADPGTVFALEMAFFGALVQAGSGTFTY 186
A++ DP + +R RI E+ RRIT+++GPGA L M F GA + A S Y
Sbjct 121 AIM--ADDPVMDDIRGRIAVEVSRRITASLGPGAATEVAATLHMVFSGAQMHARSTAGGY 178
Query 187 HEIADRLGYVVGLILAGANEPSTGGS 212
+AD+L V LI+ +P T G
Sbjct 179 RAVADKLDDAVSLIMNSQRDPHTAGK 204
>gi|226364177|ref|YP_002781959.1| TetR family transcriptional regulator [Rhodococcus opacus B4]
gi|226242666|dbj|BAH53014.1| putative TetR family transcriptional regulator [Rhodococcus opacus
B4]
Length=190
Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 93/201 (47%), Positives = 119/201 (60%), Gaps = 12/201 (5%)
Query 1 VSSDVLVTTPAQRQTEPHAEAVSRNRRQQATFRKVLAAAMATLREKSYADLTVRLVAARA 60
+SS + + +R TE A+ V R R AA+ LRE+ +A LTVR VA A
Sbjct 1 MSSSMNFESTRRRLTEKQADTVDRLTR----------AAVEVLREEGFAGLTVRSVAGIA 50
Query 61 KVAPATAYTYFSSKNHLIAEVYLDLVRQVPCVTDVNVPMPIRVTSSLRHLALVVADEPEI 120
VAPATAYTYFSSK HL+AEV+ + P D + RV + LRH+AL+VADEPE+
Sbjct 51 GVAPATAYTYFSSKEHLVAEVFWRRLAASPQPADEGLDRTGRVVAVLRHIALLVADEPEL 110
Query 121 GAACTAALLDGGADPAVRAVRDRIGAEIHRRITSAIGPGADPGTVFALEMAFFGALVQAG 180
A T ALL G DP V +R RIG EI R+ +A+G G DP + ALE+ + G LV+AG
Sbjct 111 AGAVTNALL--GRDPDVEHLRARIGLEIRDRLATALGEGHDPDVLEALELLYAGGLVRAG 168
Query 181 SGTFTYHEIADRLGYVVGLIL 201
G +Y + ADRL LIL
Sbjct 169 MGYGSYAQFADRLETSAKLIL 189
>gi|111021640|ref|YP_704612.1| TetR family transcriptional regulator [Rhodococcus jostii RHA1]
gi|110821170|gb|ABG96454.1| possible transcriptional regulator, TetR family protein [Rhodococcus
jostii RHA1]
Length=186
Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/190 (48%), Positives = 114/190 (60%), Gaps = 12/190 (6%)
Query 12 QRQTEPHAEAVSRNRRQQATFRKVLAAAMATLREKSYADLTVRLVAARAKVAPATAYTYF 71
+R TE A+ V R R AA+ LRE+ +A LTVR VA A VAPATAYTYF
Sbjct 8 RRLTEKQADTVDRLTR----------AAVEVLREEGFAGLTVRSVAGIAGVAPATAYTYF 57
Query 72 SSKNHLIAEVYLDLVRQVPCVTDVNVPMPIRVTSSLRHLALVVADEPEIGAACTAALLDG 131
SSK HL+AEV+ + P D + RV + LRH+AL+VADEPE+ A T ALL
Sbjct 58 SSKEHLVAEVFWRRLAGSPQPADDGLDRTGRVVAVLRHIALLVADEPELAGAVTNALL-- 115
Query 132 GADPAVRAVRDRIGAEIHRRITSAIGPGADPGTVFALEMAFFGALVQAGSGTFTYHEIAD 191
G DP V +R RIG EI R+ +A+G G DP + ALE+ + G LV+AG G +Y + AD
Sbjct 116 GRDPDVEHLRARIGLEIRDRLATALGEGHDPDVLEALELLYAGGLVRAGMGYGSYAQFAD 175
Query 192 RLGYVVGLIL 201
RL LIL
Sbjct 176 RLETSAKLIL 185
>gi|336457632|gb|EGO36636.1| transcriptional regulator, tetR family [Mycobacterium avium subsp.
paratuberculosis S397]
Length=169
Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/171 (50%), Positives = 113/171 (67%), Gaps = 4/171 (2%)
Query 35 VLAAAMATLREKSYADLTVRLVAARAKVAPATAYTYFSSKNHLIAEVYLDLVRQVPCVTD 94
+L A + LRE SYA LT+R VA RA V+PA+AYTYF SK+ L+A VYL +R +P TD
Sbjct 1 MLDAGLQELRESSYAGLTMRAVATRAGVSPASAYTYFPSKSALVAAVYLRFLRDLPVHTD 60
Query 95 VNVPMPIRVTSSLRHLALVVADEPEIGAACTAALLDGGADPAVRAVRDRIGAEIHRRITS 154
VN RV+++LR +A+VVADEPE+ AAC AAL+ DPAV+ +R++IG E+ RRI +
Sbjct 61 VNETAQRRVSATLRDMAVVVADEPELTAACGAALM--ADDPAVKPLREQIGEEVSRRIAA 118
Query 155 AIGPGADPGTVFALEMAFFGALVQAGSGTFTYHEIADRLGYVVGLILAGAN 205
A+GPG L+M F GAL+ A +F EI+ +L V LIL A
Sbjct 119 ALGPGWPRAVKSTLQMTFSGALMTARFVSFA--EISGQLDEAVDLILGAAR 167
>gi|118618490|ref|YP_906822.1| hypothetical protein MUL_3114 [Mycobacterium ulcerans Agy99]
gi|118570600|gb|ABL05351.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=163
Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/165 (51%), Positives = 110/165 (67%), Gaps = 4/165 (2%)
Query 40 MATLREKSYADLTVRLVAARAKVAPATAYTYFSSKNHLIAEVYLDLVRQVPCVTDVNVPM 99
M LR S+A+LT+R VAARA V+PA+AYTYF SK+ L+A VYL L+R +P TDVN
Sbjct 1 MDELRATSFANLTMRAVAARAGVSPASAYTYFPSKSALVAAVYLRLLRDLPLHTDVNDTT 60
Query 100 PIRVTSSLRHLALVVADEPEIGAACTAALLDGGADPAVRAVRDRIGAEIHRRITSAIGPG 159
RV++++R +A+VVADEPE+ AAC AL+ DPAV+ +R +IG E+ RRI +A+GPG
Sbjct 61 KTRVSATMRDMAMVVADEPELTAACGTALM--ADDPAVQPLRTQIGEEVARRIGAALGPG 118
Query 160 ADPGTVFALEMAFFGALVQAGSGTFTYHEIADRLGYVVGLILAGA 204
L+M F GAL+ A +Y EIA +L V LIL A
Sbjct 119 WPRSVKSTLQMTFSGALMTA--RFLSYEEIAGQLDEAVNLILGAA 161
>gi|229492660|ref|ZP_04386461.1| transcriptional regulator, TetR family protein [Rhodococcus erythropolis
SK121]
gi|229320319|gb|EEN86139.1| transcriptional regulator, TetR family protein [Rhodococcus erythropolis
SK121]
Length=196
Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/180 (48%), Positives = 118/180 (66%), Gaps = 2/180 (1%)
Query 26 RRQQATFRKVLAAAMATLREKSYADLTVRLVAARAKVAPATAYTYFSSKNHLIAEVYLDL 85
++Q T ++ AAA+ LR+K +ADLTVR+VAA A VA ATAYTYFSSK+HL+AE++
Sbjct 16 QQQAETVDRLTAAAITVLRDKGFADLTVRMVAAEAGVAAATAYTYFSSKSHLVAELFWRR 75
Query 86 VRQVPCVTDVNVPMPIRVTSSLRHLALVVADEPEIGAACTAALLDGGADPAVRAVRDRIG 145
+ VP +V S LR +AL+V+DEPE+ AA T A++ G DP V +R RIG
Sbjct 76 LDAVPHEPSPEAEREAQVCSVLRSVALLVSDEPELAAAVTTAMM--GNDPDVEHLRGRIG 133
Query 146 AEIHRRITSAIGPGADPGTVFALEMAFFGALVQAGSGTFTYHEIADRLGYVVGLILAGAN 205
I R+ A+GP DP + ALE+++ GALV+AG G +Y +IADRL LI+AG +
Sbjct 134 KNIRERLIEALGPSYDPDVLEALEISWSGALVRAGMGYESYSQIADRLEVTARLIMAGRD 193
>gi|226306848|ref|YP_002766808.1| TetR family transcriptional regulator [Rhodococcus erythropolis
PR4]
gi|226185965|dbj|BAH34069.1| putative TetR family transcriptional regulator [Rhodococcus erythropolis
PR4]
Length=200
Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 86/180 (48%), Positives = 118/180 (66%), Gaps = 2/180 (1%)
Query 26 RRQQATFRKVLAAAMATLREKSYADLTVRLVAARAKVAPATAYTYFSSKNHLIAEVYLDL 85
++Q T ++ AAA+ LR+K +ADLTVR+VAA A VA ATAYTYFSSK+HL+AE++
Sbjct 20 QQQAETVDRLTAAAITVLRDKGFADLTVRMVAAEAGVAAATAYTYFSSKSHLVAELFWRR 79
Query 86 VRQVPCVTDVNVPMPIRVTSSLRHLALVVADEPEIGAACTAALLDGGADPAVRAVRDRIG 145
+ VP +V S LR +AL+V+DEPE+ AA T A++ G DP V +R RIG
Sbjct 80 LDAVPHEPSPEAEREAQVCSVLRSVALLVSDEPELAAAVTTAMM--GNDPDVEHLRGRIG 137
Query 146 AEIHRRITSAIGPGADPGTVFALEMAFFGALVQAGSGTFTYHEIADRLGYVVGLILAGAN 205
I R+ A+GP DP + ALE+++ GALV+AG G +Y +IADRL LI+AG +
Sbjct 138 KNIRERLIEALGPSYDPDVLEALEISWSGALVRAGMGYESYSQIADRLEVTARLIMAGRD 197
>gi|312138347|ref|YP_004005683.1| tetr family transcriptional regulator [Rhodococcus equi 103S]
gi|325674662|ref|ZP_08154349.1| TetR family transcriptional regulator [Rhodococcus equi ATCC
33707]
gi|311887686|emb|CBH46998.1| putative TetR family transcriptional regulator [Rhodococcus equi
103S]
gi|325554248|gb|EGD23923.1| TetR family transcriptional regulator [Rhodococcus equi ATCC
33707]
Length=188
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 89/190 (47%), Positives = 113/190 (60%), Gaps = 12/190 (6%)
Query 12 QRQTEPHAEAVSRNRRQQATFRKVLAAAMATLREKSYADLTVRLVAARAKVAPATAYTYF 71
+R T AE VSR R A+ LRE +A LTVRLVA +A VAPATAYTYF
Sbjct 10 RRLTTKQAETVSRLTR----------CAVEVLRENGFAGLTVRLVAKQAGVAPATAYTYF 59
Query 72 SSKNHLIAEVYLDLVRQVPCVTDVNVPMPIRVTSSLRHLALVVADEPEIGAACTAALLDG 131
SSK HL+AEV+ + +P V+ R+ LR +AL+V+DEPE+ AA T ALL
Sbjct 60 SSKEHLVAEVFWRRLAAMPADEPVSDDRTTRIVEVLRSVALLVSDEPELAAAVTTALL-- 117
Query 132 GADPAVRAVRDRIGAEIHRRITSAIGPGADPGTVFALEMAFFGALVQAGSGTFTYHEIAD 191
G DP V +R RIG EI +R+ A+G D + ALEM + GAL++AG G +Y IAD
Sbjct 118 GRDPDVVHLRARIGLEIRKRLLHAMGDEPDDDLLEALEMLYAGALLRAGMGYDSYGHIAD 177
Query 192 RLGYVVGLIL 201
RL L+L
Sbjct 178 RLEISARLLL 187
>gi|226306867|ref|YP_002766827.1| TetR family transcriptional regulator [Rhodococcus erythropolis
PR4]
gi|226185984|dbj|BAH34088.1| putative TetR family transcriptional regulator [Rhodococcus erythropolis
PR4]
Length=201
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/175 (46%), Positives = 110/175 (63%), Gaps = 2/175 (1%)
Query 27 RQQATFRKVLAAAMATLREKSYADLTVRLVAARAKVAPATAYTYFSSKNHLIAEVYLDLV 86
+Q T ++ A + LR++ ++ LTVR VAA A V ATAYTYF+SK HL+AEV+ +
Sbjct 26 KQAETVARLAEATVKVLRKQEFSGLTVRSVAAEAGVGTATAYTYFASKEHLVAEVFWRRL 85
Query 87 RQVPCVTDVNVPMPIRVTSSLRHLALVVADEPEIGAACTAALLDGGADPAVRAVRDRIGA 146
+ + V S LR++AL++ADEPE+ AA T ALL G+DP V +R RIG
Sbjct 86 QNSSAPDGSGLDRTAHVLSVLRNIALLLADEPEVSAAVTNALL--GSDPEVEHLRGRIGL 143
Query 147 EIHRRITSAIGPGADPGTVFALEMAFFGALVQAGSGTFTYHEIADRLGYVVGLIL 201
EIH+R+ SA+ P +P + ALEM + GAL++AG G TY +IA RL LIL
Sbjct 144 EIHQRLASALDPNGEPEVLEALEMLYAGALLRAGIGYGTYAQIAGRLEASALLIL 198
>gi|319950415|ref|ZP_08024331.1| putative TetR family transcriptional regulator [Dietzia cinnamea
P4]
gi|319435931|gb|EFV91135.1| putative TetR family transcriptional regulator [Dietzia cinnamea
P4]
Length=190
Score = 138 bits (348), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 86/177 (49%), Positives = 110/177 (63%), Gaps = 2/177 (1%)
Query 25 NRRQQATFRKVLAAAMATLREKSYADLTVRLVAARAKVAPATAYTYFSSKNHLIAEVYLD 84
N +Q T ++ AA+ LREK L VR VAARA VAPATAYTYFSSK HLIAEV+
Sbjct 15 NGQQAETVDRLTTAAVEVLREKGPGGLAVRGVAARAGVAPATAYTYFSSKGHLIAEVFWR 74
Query 85 LVRQVPCVTDVNVPMPIRVTSSLRHLALVVADEPEIGAACTAALLDGGADPAVRAVRDRI 144
+ + RV + LR +AL++ADEPE+ +A TAALL G DP V +R RI
Sbjct 75 RLSEHVTERPEGGSTADRVVAVLRDVALLLADEPELSSAVTAALL--GDDPEVSHLRIRI 132
Query 145 GAEIHRRITSAIGPGADPGTVFALEMAFFGALVQAGSGTFTYHEIADRLGYVVGLIL 201
GA+I RR+ +A+G D V ALEM + GALV+AG G +Y ++AD + LIL
Sbjct 133 GADIRRRLVAALGEENDDEVVSALEMVYAGALVRAGMGYGSYSDMADAIESAARLIL 189
>gi|229492756|ref|ZP_04386557.1| transcriptional regulator, TetR family protein [Rhodococcus erythropolis
SK121]
gi|229320415|gb|EEN86235.1| transcriptional regulator, TetR family protein [Rhodococcus erythropolis
SK121]
Length=171
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/164 (48%), Positives = 105/164 (65%), Gaps = 2/164 (1%)
Query 38 AAMATLREKSYADLTVRLVAARAKVAPATAYTYFSSKNHLIAEVYLDLVRQVPCVTDVNV 97
A + LR++ ++ LTVR VAA A V ATAYTYF+SK HL+AEV+ ++ +
Sbjct 7 ATVKVLRKQEFSGLTVRSVAAEAGVGTATAYTYFASKEHLVAEVFWRRLQNSSAPDGSGL 66
Query 98 PMPIRVTSSLRHLALVVADEPEIGAACTAALLDGGADPAVRAVRDRIGAEIHRRITSAIG 157
V S LR++AL++ADEPE+ AA T ALL G+DP V +R RIG EIH+R+ SA+
Sbjct 67 DRTAHVLSVLRNIALLLADEPEVSAAVTNALL--GSDPEVEHLRGRIGLEIHQRLASALD 124
Query 158 PGADPGTVFALEMAFFGALVQAGSGTFTYHEIADRLGYVVGLIL 201
P +P + ALEM + GAL++AG G TY +IA RL LIL
Sbjct 125 PNGEPEVLEALEMLYAGALLRAGIGYGTYAQIAGRLEASALLIL 168
>gi|54026631|ref|YP_120873.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
gi|54018139|dbj|BAD59509.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
Length=192
Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 89/193 (47%), Positives = 121/193 (63%), Gaps = 9/193 (4%)
Query 15 TEPHAEAVSRNRR-----QQATFRKVLAAAMATLREKSYADLTVRLVAARAKVAPATAYT 69
+E + AV RR Q T K+ AA+ L + +A +T+RLVAA A V ATAYT
Sbjct 2 SEGESRAVEATRRRLSGKQADTVDKLTRAAVEVLSREGFAGMTIRLVAAAAGVGTATAYT 61
Query 70 YFSSKNHLIAEVYLDLVRQVPC-VTDVNVPMPIRVTSSLRHLALVVADEPEIGAACTAAL 128
YFSSK HL+AE++ + P +D + P+ RV + LR++AL+VADE E+ A T+AL
Sbjct 62 YFSSKEHLVAEIFWRRLVASPSPASDSDDPVA-RVIAELRNIALLVADEQELSGAVTSAL 120
Query 129 LDGGADPAVRAVRDRIGAEIHRRITSAIGPGADPGTVFALEMAFFGALVQAGSGTFTYHE 188
L G DP V +RDRIGAEI +RI A+GP DP V +LE+ + GALV+AG G +Y +
Sbjct 121 L--GRDPDVAHLRDRIGAEIRKRILRALGPDPDPDVVESLELLYAGALVRAGMGYGSYSQ 178
Query 189 IADRLGYVVGLIL 201
IADR+ +IL
Sbjct 179 IADRIEKSALMIL 191
>gi|325676488|ref|ZP_08156166.1| TetR family transcriptional regulator [Rhodococcus equi ATCC
33707]
gi|325552666|gb|EGD22350.1| TetR family transcriptional regulator [Rhodococcus equi ATCC
33707]
Length=186
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/175 (43%), Positives = 110/175 (63%), Gaps = 2/175 (1%)
Query 27 RQQATFRKVLAAAMATLREKSYADLTVRLVAARAKVAPATAYTYFSSKNHLIAEVYLDLV 86
+Q T ++ +A+ LR++ +A LTVR VA+RA V PATAYTYFSSK HL+AEV+ +
Sbjct 13 KQADTVDRLCESAVQVLRQEDFAGLTVRAVASRAGVGPATAYTYFSSKEHLVAEVFWRRL 72
Query 87 RQVPCVTDVNVPMPIRVTSSLRHLALVVADEPEIGAACTAALLDGGADPAVRAVRDRIGA 146
Q P + RV + LR +AL++ADEP + +A T ALL G+DP V +R RIG
Sbjct 73 SQSPRPESDGLDRTGRVVAVLRGIALLLADEPGLSSAVTNALL--GSDPDVEHLRVRIGI 130
Query 147 EIHRRITSAIGPGADPGTVFALEMAFFGALVQAGSGTFTYHEIADRLGYVVGLIL 201
+I R+ A+G ADP + L++ + GAL++AG G +Y ++A +L +IL
Sbjct 131 DIRGRLEEALGKPADPELLETLDLLYAGALLRAGIGYGSYQDLAGQLERSATMIL 185
>gi|312138812|ref|YP_004006148.1| tetr family transcriptional regulator [Rhodococcus equi 103S]
gi|311888151|emb|CBH47463.1| putative TetR family transcriptional regulator [Rhodococcus equi
103S]
Length=193
Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 74/175 (43%), Positives = 109/175 (63%), Gaps = 2/175 (1%)
Query 27 RQQATFRKVLAAAMATLREKSYADLTVRLVAARAKVAPATAYTYFSSKNHLIAEVYLDLV 86
+Q T ++ +A+ LR++ +A LTVR VA+RA V PATAYTYFSSK HL+AEV+ +
Sbjct 20 KQADTVDRLCESAVQVLRQEDFAGLTVRAVASRAGVGPATAYTYFSSKEHLVAEVFWRRL 79
Query 87 RQVPCVTDVNVPMPIRVTSSLRHLALVVADEPEIGAACTAALLDGGADPAVRAVRDRIGA 146
Q P + RV + LR + L++ADEP + +A T ALL G+DP V +R RIG
Sbjct 80 SQSPRPESDGLDRTGRVVAVLRGIVLLLADEPGLSSAVTNALL--GSDPDVEHLRVRIGI 137
Query 147 EIHRRITSAIGPGADPGTVFALEMAFFGALVQAGSGTFTYHEIADRLGYVVGLIL 201
+I R+ A+G ADP + L++ + GAL++AG G +Y ++A +L +IL
Sbjct 138 DIRGRLEEALGKPADPELLETLDLLYAGALLRAGIGYGSYQDLAGQLERSATMIL 192
>gi|118471670|ref|YP_890693.1| transcriptional regulator [Mycobacterium smegmatis str. MC2 155]
gi|118172957|gb|ABK73853.1| putative transcriptional regulator [Mycobacterium smegmatis str.
MC2 155]
Length=189
Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/190 (42%), Positives = 109/190 (58%), Gaps = 4/190 (2%)
Query 15 TEPHAEAVSR--NRRQQATFRKVLAAAMATLREKSYADLTVRLVAARAKVAPATAYTYFS 72
++P E+ R + RQ T ++ AA+ + + YA LTVR VAA A V ATAYTYFS
Sbjct 2 SDPAMESTRRRLSARQADTVERLGRAAVELISREGYAGLTVRRVAAEAGVGSATAYTYFS 61
Query 73 SKNHLIAEVYLDLVRQVPCVTDVNVPMPIRVTSSLRHLALVVADEPEIGAACTAALLDGG 132
SK HL+AEV+ + P + RV L+H+A +VADEP A T ALL G
Sbjct 62 SKEHLVAEVFWRRLSAAPPAVHESPDPATRVVEVLQHIASLVADEPAFAGAVTTALL--G 119
Query 133 ADPAVRAVRDRIGAEIHRRITSAIGPGADPGTVFALEMAFFGALVQAGSGTFTYHEIADR 192
DP V A+R RIGA+I +R+ +A+GP + ALE+ + G +V AG G +Y ++ R
Sbjct 120 KDPDVDALRQRIGADIRQRLVAALGPDVRIDVIEALELLYTGTMVWAGMGYDSYEQVVRR 179
Query 193 LGYVVGLILA 202
L L+L+
Sbjct 180 LEKSARLVLS 189
>gi|315446568|ref|YP_004079447.1| TetR family transcriptional regulator [Mycobacterium sp. Spyr1]
gi|315264871|gb|ADU01613.1| transcriptional regulator, TetR family [Mycobacterium sp. Spyr1]
Length=190
Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 86/191 (46%), Positives = 109/191 (58%), Gaps = 4/191 (2%)
Query 15 TEPHAEAVSRNR--RQQATFRKVLAAAMATLREKSYADLTVRLVAARAKVAPATAYTYFS 72
++P E+ R RQ T ++ AA+ LR + LTVR VAA A V ATAYTYFS
Sbjct 2 SDPTLESTRRRLTARQADTVDRLGRAAVDLLRRDGFGALTVRRVAAEAGVGAATAYTYFS 61
Query 73 SKNHLIAEVYLDLVRQVPCVTDVNVPMPIRVTSSLRHLALVVADEPEIGAACTAALLDGG 132
SK HL+AEV+ + P RV L H++L+VADEP+ A T ALL G
Sbjct 62 SKEHLVAEVFWRRLTSSPRCEYGAADRAARVIEVLGHISLLVADEPQFAGAVTTALL--G 119
Query 133 ADPAVRAVRDRIGAEIHRRITSAIGPGADPGTVFALEMAFFGALVQAGSGTFTYHEIADR 192
DP V +R RIG +I R+ A+GP DP + ALEM + GALV+AG G +Y EIAD+
Sbjct 120 RDPDVEVLRQRIGLDIRDRLADALGPDTDPDVLDALEMLYSGALVRAGMGYASYEEIADK 179
Query 193 LGYVVGLILAG 203
L LIL G
Sbjct 180 LERSARLILGG 190
>gi|326331692|ref|ZP_08197980.1| transcriptional regulator, TetR family [Nocardioidaceae bacterium
Broad-1]
gi|325950491|gb|EGD42543.1| transcriptional regulator, TetR family [Nocardioidaceae bacterium
Broad-1]
Length=190
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/183 (43%), Positives = 108/183 (60%), Gaps = 6/183 (3%)
Query 27 RQQATFRKVLAAAMATLREKSYADLTVRLVAARAKVAPATAYTYFSSKNHLIAEVYLDLV 86
RQ T ++ +A + LRE + LT+R VAARA V+ ATAYTY +SK+ L AE++ +
Sbjct 8 RQAETVERLFSAGLQELREVGHEALTIRSVAARAGVSSATAYTYLASKSRLFAELFWRHL 67
Query 87 RQVPCVTDVNVPMPIRVTSSLRHLALVVADEPEIGAACTAALLDGGADPAVRAVRDRIGA 146
V T + RV ++R L +A+EP + AA T ALL G+D V +R RIG
Sbjct 68 THVSSTTATGSRVE-RVQEAVRSLTTRIAEEPALAAAVTPALL--GSDADVERLRLRIGG 124
Query 147 EIHRRITSAIGPGADPGTVFALEMAFFGALVQAGSGTFTYHEIADRLGYVVGLILAGANE 206
E R +A+G GA+ AL +AF GAL+QAG G TY E+ADRL VV +I+ ++
Sbjct 125 EFAARFEAALGEGAEDAVREALLLAFSGALLQAGMGLMTYDEMADRLAPVVAVIV---DK 181
Query 207 PST 209
PS
Sbjct 182 PSN 184
>gi|54024543|ref|YP_118785.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
gi|54016051|dbj|BAD57421.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
Length=159
Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/151 (48%), Positives = 98/151 (65%), Gaps = 2/151 (1%)
Query 43 LREKSYADLTVRLVAARAKVAPATAYTYFSSKNHLIAEVYLDLVRQVPCVTDVNVPMPIR 102
L + YA +T+R+VAA A V ATAYTYFSSK HL+AE++ +R P R
Sbjct 2 LAREGYAGMTIRMVAAAAGVGAATAYTYFSSKEHLVAEIFWRRLRAAPVPATAGSDRTAR 61
Query 103 VTSSLRHLALVVADEPEIGAACTAALLDGGADPAVRAVRDRIGAEIHRRITSAIGPGADP 162
V + LR +AL+VADEPE+ A T ALL G DP V+ +R RIG EI RI++A+ P DP
Sbjct 62 VIAELRTIALLVADEPELSGAVTGALL--GRDPDVQHLRTRIGVEIRGRISAALAPDPDP 119
Query 163 GTVFALEMAFFGALVQAGSGTFTYHEIADRL 193
+ +LE+ + GAL++AG G +Y +IADR+
Sbjct 120 EIIESLELIYAGALMRAGMGHESYADIADRI 150
>gi|326383325|ref|ZP_08205013.1| tetr family transcriptional regulator [Gordonia neofelifaecis
NRRL B-59395]
gi|326198075|gb|EGD55261.1| tetr family transcriptional regulator [Gordonia neofelifaecis
NRRL B-59395]
Length=191
Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 71/179 (40%), Positives = 103/179 (58%), Gaps = 3/179 (1%)
Query 25 NRRQQATFRKVLAAAMATLREKSYADLTVRLVAARAKVAPATAYTYFSSKNHLIAEVYLD 84
N RQ T ++L A +A L + Y DLT+RL+AA A V+PATAYTYFSSK+HL A ++
Sbjct 14 NARQLETVGRLLDAGLALLEDSPYEDLTLRLIAAGANVSPATAYTYFSSKDHLFASLFWR 73
Query 85 LVRQVPCVTDVNVPMPIRVTSSLRHLALVVADEPEIGAACTAALLDGGADPAVRAVRDRI 144
V Q P +++ R+ ++R++A VV + P + A T +LL ADP V +R I
Sbjct 74 QVAQTPE-PELSGDAGERLRQTVRYIADVVGESPTVTEAATKSLL--AADPDVGRIRVEI 130
Query 145 GAEIHRRITSAIGPGADPGTVFALEMAFFGALVQAGSGTFTYHEIADRLGYVVGLILAG 203
G + +A+G DP + AL F GAL++AG G Y ++ D+L V +I G
Sbjct 131 GTHWYGLFKAALGDDVDPAVLRALTFTFSGALLEAGMGVIAYDDLFDQLDAAVAVIARG 189
>gi|120406656|ref|YP_956485.1| TetR family transcriptional regulator [Mycobacterium vanbaalenii
PYR-1]
gi|119959474|gb|ABM16479.1| transcriptional regulator, TetR family [Mycobacterium vanbaalenii
PYR-1]
Length=189
Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/190 (45%), Positives = 109/190 (58%), Gaps = 4/190 (2%)
Query 15 TEPHAEAVSRNR--RQQATFRKVLAAAMATLREKSYADLTVRLVAARAKVAPATAYTYFS 72
++P E+ R RQ T ++ AA+ LR +A LTVR VAA A V ATAYTYFS
Sbjct 2 SDPALESTRRRLTARQADTVDRLGRAAVELLRRDGFAALTVRRVAAEAGVGAATAYTYFS 61
Query 73 SKNHLIAEVYLDLVRQVPCVTDVNVPMPIRVTSSLRHLALVVADEPEIGAACTAALLDGG 132
SK HL+AEV+ + V + RV L H++L+VA EPE A T ALL G
Sbjct 62 SKEHLVAEVFWRRLAGSQRVDHGSGDPASRVVEVLGHISLLVAGEPEFAGAVTTALL--G 119
Query 133 ADPAVRAVRDRIGAEIHRRITSAIGPGADPGTVFALEMAFFGALVQAGSGTFTYHEIADR 192
DP V +R RIG +I R++ A+GP DP + ALEM + GALV+AG G +Y EIA +
Sbjct 120 KDPDVEVLRLRIGRDIRDRLSDALGPDTDPDVIDALEMLYSGALVRAGMGYTSYPEIAAK 179
Query 193 LGYVVGLILA 202
L L+L
Sbjct 180 LEKAARLMLG 189
>gi|262203709|ref|YP_003274917.1| TetR family transcriptional regulator [Gordonia bronchialis DSM
43247]
gi|262087056|gb|ACY23024.1| regulatory protein TetR [Gordonia bronchialis DSM 43247]
Length=193
Score = 114 bits (285), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 78/184 (43%), Positives = 106/184 (58%), Gaps = 7/184 (3%)
Query 15 TEPHAEAVSRNR--RQQA-TFRKVLAAAMATLREKSYADLTVRLVAARAKVAPATAYTYF 71
+ P ++ +R R +QQA T ++ AA+ L + + LTVR VA A VAPATAYTYF
Sbjct 2 SSPVSQESTRRRLTQQQAETVTRLTDAAVDILNQDGFDGLTVRSVAKLAGVAPATAYTYF 61
Query 72 SSKNHLIAEVYLDLVRQVPCVTDVNVPMPIRVTSSLRHLALVVADEPEIGAACTAALLDG 131
SSK+HL+AEV+ + D RV LR +++VVA E ++G A T ALL
Sbjct 62 SSKSHLVAEVFWRRLSAGVSDPDPQATHTERVAQVLREVSMVVAGEGQLGGAVTMALL-- 119
Query 132 GADPAVRAVRDRIGAEIHRRITSAIGPGAD-PGTVF-ALEMAFFGALVQAGSGTFTYHEI 189
G DP V +R RIG I RR+ A+ + PG + ALEM + G LV AG G TY +
Sbjct 120 GTDPDVEHLRLRIGGFIRRRLAQALETDPEHPGPLLDALEMIYAGGLVHAGMGHMTYEQT 179
Query 190 ADRL 193
++RL
Sbjct 180 SERL 183
>gi|108802058|ref|YP_642255.1| TetR family transcriptional regulator [Mycobacterium sp. MCS]
gi|119871210|ref|YP_941162.1| TetR family transcriptional regulator [Mycobacterium sp. KMS]
gi|126438037|ref|YP_001073728.1| TetR family transcriptional regulator [Mycobacterium sp. JLS]
gi|108772477|gb|ABG11199.1| transcriptional regulator, TetR family [Mycobacterium sp. MCS]
gi|119697299|gb|ABL94372.1| transcriptional regulator, TetR family [Mycobacterium sp. KMS]
gi|126237837|gb|ABO01238.1| transcriptional regulator, TetR family [Mycobacterium sp. JLS]
Length=189
Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/190 (42%), Positives = 107/190 (57%), Gaps = 4/190 (2%)
Query 15 TEPHAEAVSRNR--RQQATFRKVLAAAMATLREKSYADLTVRLVAARAKVAPATAYTYFS 72
++P E+ R +Q T ++ AA+ L ++ LTVR VAA A V ATAYTYFS
Sbjct 2 SDPTLESTRRRLTAKQADTVDRLGRAAVDILNRDGFSGLTVRRVAAEAGVGAATAYTYFS 61
Query 73 SKNHLIAEVYLDLVRQVPCVTDVNVPMPIRVTSSLRHLALVVADEPEIGAACTAALLDGG 132
SK HL+AEV+ + P V+ RV LR +AL+VADEPE A T ALL G
Sbjct 62 SKEHLVAEVFWRRLSAAPPAAHVSDDPAARVVEVLRDIALLVADEPEFAGAVTNALL--G 119
Query 133 ADPAVRAVRDRIGAEIHRRITSAIGPGADPGTVFALEMAFFGALVQAGSGTFTYHEIADR 192
DP V +R RIG ++ R+ A+GP D + ALE+ + GALV AG G +Y ++ R
Sbjct 120 KDPDVEVLRQRIGRDVRDRLVDALGPPVDFDVIEALELLYVGALVWAGMGYSSYDDMTQR 179
Query 193 LGYVVGLILA 202
L L+L+
Sbjct 180 LERSARLLLS 189
>gi|343927850|ref|ZP_08767318.1| putative TetR family transcriptional regulator [Gordonia alkanivorans
NBRC 16433]
gi|343762491|dbj|GAA14244.1| putative TetR family transcriptional regulator [Gordonia alkanivorans
NBRC 16433]
Length=193
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/189 (44%), Positives = 112/189 (60%), Gaps = 17/189 (8%)
Query 15 TEPHAEAVSRNR--RQQA-TFRKVLAAAMATLREKSYADLTVRLVAARAKVAPATAYTYF 71
+ P ++ +R R +QQA T ++ AA+ L + + LTVR VA A VAPATAYTYF
Sbjct 2 SSPVSQESTRRRLTQQQAETVARLTDAAVDVLNAEGFDGLTVRSVAKLAGVAPATAYTYF 61
Query 72 SSKNHLIAEVYLDLVRQVPCVTDVNVPMPI-----RVTSSLRHLALVVADEPEIGAACTA 126
SSK+HL+AEV+ R++ V+ P P RV LR +ALVVA E ++G A T
Sbjct 62 SSKSHLVAEVFW---RRLSA--GVSEPDPAATPAERVAQVLREVALVVAGEGQLGGAVTV 116
Query 127 ALLDGGADPAVRAVRDRIGAEIHRRITSAIGPG-ADPGTVF-ALEMAFFGALVQAGSGTF 184
ALL G DP V +R RIGA I RR+ +A+ +PG + LEM + G LV AG G
Sbjct 117 ALL--GTDPDVEHLRVRIGAFIRRRLAAALEEDPENPGPLLDTLEMIYSGGLVYAGMGHM 174
Query 185 TYHEIADRL 193
TY + ++RL
Sbjct 175 TYEQTSERL 183
>gi|126434312|ref|YP_001070003.1| TetR family transcriptional regulator [Mycobacterium sp. JLS]
gi|126234112|gb|ABN97512.1| putative transcriptional regulator, TetR family [Mycobacterium
sp. JLS]
Length=194
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/177 (44%), Positives = 106/177 (60%), Gaps = 1/177 (0%)
Query 27 RQQATFRKVLAAAMATLREKSYADLTVRLVAARAKVAPATAYTYFSSKNHLIAEVYLDLV 86
R+ T R+V +AA A L E + L++ +AARA++APA F S + ++AE+YL V
Sbjct 18 RRSLTCRRVFSAAAALLGECADNRLSMPALAARARLAPAAVNARFPSVDAVLAELYLHRV 77
Query 87 RQVPCVTDVNVPMPIRVTSSLRHLALVVADEPEIGAACTAALLDGGADPAVRAVRDRIGA 146
+P D + RV+ LR + LV+ADEP + AAC+ ALL DPAV RDRIGA
Sbjct 78 SALPLTVDTGAAVAARVSGQLRAVTLVMADEPTLAAACSRALL-CSDDPAVLTARDRIGA 136
Query 147 EIHRRITSAIGPGADPGTVFALEMAFFGALVQAGSGTFTYHEIADRLGYVVGLILAG 203
E+ RRI +A+G GA P LE F+GAL+Q S Y ++A RL ++ LIL G
Sbjct 137 EVQRRIAAALGTGAWPEVQATLETVFWGALLQVQSRHIDYRDMAGRLDTMLSLILPG 193
>gi|326384241|ref|ZP_08205923.1| regulatory protein TetR [Gordonia neofelifaecis NRRL B-59395]
gi|326197106|gb|EGD54298.1| regulatory protein TetR [Gordonia neofelifaecis NRRL B-59395]
Length=199
Score = 112 bits (280), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/179 (44%), Positives = 105/179 (59%), Gaps = 8/179 (4%)
Query 27 RQQATFRKVLAAAMATLREKSYADLTVRLVAARAKVAPATAYTYFSSKNHLIAEVYL-DL 85
+Q K+ AA+ L + L+VR VA RA VAPATAYTYFSSK+HL+AEV+ L
Sbjct 22 QQAEKISKMADAAVEILAADGFDALSVRDVAKRAGVAPATAYTYFSSKSHLVAEVFWRRL 81
Query 86 VRQVPCVTDVNVPMPIRVTSSLRHLALVVADEPEIGAACTAALLDGGADPAVRAVRDRIG 145
VP D ++P RV LR +++VVA + ++G A T ALL G DP +R RIG
Sbjct 82 AAGVPE-ADPSLPARDRVAQVLRGVSMVVAGDGQLGGAVTVALL--GNDPDSEHLRWRIG 138
Query 146 AEIHRRITSAIG---PGADPGTVFALEMAFFGALVQAGSGTFTYHEIADRLGYVVGLIL 201
IH R+ +A+G P A+ V AL+M + G LV AG G TY ++RL GL++
Sbjct 139 RFIHDRLAAAVGNDHPEAER-VVDALQMLYAGGLVTAGMGHLTYEATSERLVAAAGLLM 196
Lambda K H
0.319 0.132 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 251148961304
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40