BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0775
Length=207
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607915|ref|NP_215289.1| hypothetical protein Rv0775 [Mycoba... 400 6e-110
gi|15840190|ref|NP_335227.1| hypothetical protein MT0799 [Mycoba... 399 1e-109
gi|294996252|ref|ZP_06801943.1| hypothetical protein Mtub2_17536... 399 2e-109
gi|340625794|ref|YP_004744246.1| hypothetical protein MCAN_07791... 394 4e-108
gi|183984886|ref|YP_001853177.1| hypothetical protein MMAR_4918 ... 377 4e-103
gi|339293796|gb|AEJ45907.1| hypothetical protein CCDC5079_0717 [... 365 2e-99
gi|339297436|gb|AEJ49546.1| hypothetical protein CCDC5180_0709 [... 364 4e-99
gi|41406707|ref|NP_959543.1| hypothetical protein MAP0609 [Mycob... 352 2e-95
gi|254818446|ref|ZP_05223447.1| hypothetical protein MintA_00897... 345 2e-93
gi|118616329|ref|YP_904661.1| hypothetical protein MUL_0488 [Myc... 343 1e-92
gi|296166477|ref|ZP_06848909.1| transcriptional regulator [Mycob... 322 2e-86
gi|254231090|ref|ZP_04924417.1| conserved hypothetical protein [... 322 3e-86
gi|118464444|ref|YP_879995.1| TetR family transcriptional regula... 322 3e-86
gi|342862181|ref|ZP_08718823.1| hypothetical protein MCOL_24946 ... 290 1e-76
gi|333992230|ref|YP_004524844.1| hypothetical protein JDM601_359... 276 1e-72
gi|118469622|ref|YP_890077.1| TetR family transcriptional regula... 273 8e-72
gi|145222202|ref|YP_001132880.1| TetR family transcriptional reg... 269 2e-70
gi|120406096|ref|YP_955925.1| TetR family transcriptional regula... 266 1e-69
gi|108801532|ref|YP_641729.1| TetR family transcriptional regula... 252 2e-65
gi|126437517|ref|YP_001073208.1| TetR family transcriptional reg... 251 4e-65
gi|240172807|ref|ZP_04751466.1| hypothetical protein MkanA1_2607... 231 7e-59
gi|169627788|ref|YP_001701437.1| TetR family transcriptional reg... 187 7e-46
gi|226364287|ref|YP_002782069.1| TetR family transcriptional reg... 176 2e-42
gi|111021757|ref|YP_704729.1| hypothetical protein RHA1_ro04786 ... 175 3e-42
gi|226304513|ref|YP_002764471.1| TetR family transcriptional reg... 175 4e-42
gi|229494419|ref|ZP_04388182.1| transcriptional regulator, TetR ... 175 4e-42
gi|325674840|ref|ZP_08154527.1| transcriptional regulator [Rhodo... 170 1e-40
gi|256380872|ref|YP_003104532.1| TetR family transcriptional reg... 152 4e-35
gi|54022525|ref|YP_116767.1| hypothetical protein nfa5580 [Nocar... 147 7e-34
gi|312138252|ref|YP_004005588.1| tetr family transcriptional reg... 146 2e-33
gi|134103580|ref|YP_001109241.1| TetR family transcriptional reg... 143 1e-32
gi|300790872|ref|YP_003771163.1| TetR family transcriptional reg... 143 2e-32
gi|262200834|ref|YP_003272042.1| TetR family transcriptional reg... 139 3e-31
gi|302531080|ref|ZP_07283422.1| TetR family transcriptional regu... 131 5e-29
gi|296141299|ref|YP_003648542.1| TetR family transcriptional reg... 125 4e-27
gi|291008057|ref|ZP_06566030.1| TetR family transcriptional regu... 120 1e-25
gi|343925801|ref|ZP_08765316.1| putative TetR family transcripti... 120 1e-25
gi|257057744|ref|YP_003135576.1| hypothetical protein Svir_38050... 118 4e-25
gi|325001961|ref|ZP_08123073.1| TetR family transcriptional regu... 117 9e-25
gi|333918345|ref|YP_004491926.1| putative TetR family transcript... 98.2 6e-19
gi|269218690|ref|ZP_06162544.1| transcriptional regulator, TetR ... 80.5 1e-13
gi|296269737|ref|YP_003652369.1| TetR family transcriptional reg... 79.7 2e-13
gi|300790972|ref|YP_003771263.1| TetR family transcriptional reg... 74.7 7e-12
gi|340532668|gb|AEK47873.1| TetR family transcriptional regulato... 74.3 1e-11
gi|297560633|ref|YP_003679607.1| TetR family transcriptional reg... 71.2 8e-11
gi|257057801|ref|YP_003135633.1| hypothetical protein Svir_38620... 71.2 8e-11
gi|302531180|ref|ZP_07283522.1| predicted protein [Streptomyces ... 71.2 9e-11
gi|325068819|ref|ZP_08127492.1| transcriptional regulator, TetR ... 70.1 2e-10
gi|343521882|ref|ZP_08758848.1| transcriptional regulator, TetR ... 68.9 4e-10
gi|284034354|ref|YP_003384285.1| TetR family transcriptional reg... 68.6 5e-10
>gi|15607915|ref|NP_215289.1| hypothetical protein Rv0775 [Mycobacterium tuberculosis H37Rv]
gi|31791963|ref|NP_854456.1| hypothetical protein Mb0798 [Mycobacterium bovis AF2122/97]
gi|121636699|ref|YP_976922.1| hypothetical protein BCG_0827 [Mycobacterium bovis BCG str. Pasteur
1173P2]
70 more sequence titles
Length=207
Score = 400 bits (1028), Expect = 6e-110, Method: Compositional matrix adjust.
Identities = 207/207 (100%), Positives = 207/207 (100%), Gaps = 0/207 (0%)
Query 1 MGVTAAVTPKGERRRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDL 60
MGVTAAVTPKGERRRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDL
Sbjct 1 MGVTAAVTPKGERRRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDL 60
Query 61 IARAVEHIGMIEVAQLRARVSALSRRRRGPETTAVVLVDLLVGEMSSPGLAEQLISRYER 120
IARAVEHIGMIEVAQLRARVSALSRRRRGPETTAVVLVDLLVGEMSSPGLAEQLISRYER
Sbjct 61 IARAVEHIGMIEVAQLRARVSALSRRRRGPETTAVVLVDLLVGEMSSPGLAEQLISRYER 120
Query 121 HIACTRLPDLRESMRRSLRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALVEGR 180
HIACTRLPDLRESMRRSLRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALVEGR
Sbjct 121 HIACTRLPDLRESMRRSLRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALVEGR 180
Query 181 DPRAAALATVVDLIDVLAPVDQRPVPF 207
DPRAAALATVVDLIDVLAPVDQRPVPF
Sbjct 181 DPRAAALATVVDLIDVLAPVDQRPVPF 207
>gi|15840190|ref|NP_335227.1| hypothetical protein MT0799 [Mycobacterium tuberculosis CDC1551]
gi|13880344|gb|AAK45041.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
gi|323720806|gb|EGB29876.1| hypothetical protein TMMG_03834 [Mycobacterium tuberculosis CDC1551A]
Length=207
Score = 399 bits (1025), Expect = 1e-109, Method: Compositional matrix adjust.
Identities = 206/207 (99%), Positives = 207/207 (100%), Gaps = 0/207 (0%)
Query 1 MGVTAAVTPKGERRRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDL 60
MGVTAAVTPKGERRRYALVSAAAELLG+GGFEAVRHRAVARRAGLPLASTTYYFSSLDDL
Sbjct 1 MGVTAAVTPKGERRRYALVSAAAELLGKGGFEAVRHRAVARRAGLPLASTTYYFSSLDDL 60
Query 61 IARAVEHIGMIEVAQLRARVSALSRRRRGPETTAVVLVDLLVGEMSSPGLAEQLISRYER 120
IARAVEHIGMIEVAQLRARVSALSRRRRGPETTAVVLVDLLVGEMSSPGLAEQLISRYER
Sbjct 61 IARAVEHIGMIEVAQLRARVSALSRRRRGPETTAVVLVDLLVGEMSSPGLAEQLISRYER 120
Query 121 HIACTRLPDLRESMRRSLRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALVEGR 180
HIACTRLPDLRESMRRSLRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALVEGR
Sbjct 121 HIACTRLPDLRESMRRSLRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALVEGR 180
Query 181 DPRAAALATVVDLIDVLAPVDQRPVPF 207
DPRAAALATVVDLIDVLAPVDQRPVPF
Sbjct 181 DPRAAALATVVDLIDVLAPVDQRPVPF 207
>gi|294996252|ref|ZP_06801943.1| hypothetical protein Mtub2_17536 [Mycobacterium tuberculosis
210]
Length=207
Score = 399 bits (1025), Expect = 2e-109, Method: Compositional matrix adjust.
Identities = 206/207 (99%), Positives = 207/207 (100%), Gaps = 0/207 (0%)
Query 1 MGVTAAVTPKGERRRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDL 60
MGVTAAVTPKGERRRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDL
Sbjct 1 MGVTAAVTPKGERRRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDL 60
Query 61 IARAVEHIGMIEVAQLRARVSALSRRRRGPETTAVVLVDLLVGEMSSPGLAEQLISRYER 120
IARAVEHIGMIEVAQLRARVSALSR+RRGPETTAVVLVDLLVGEMSSPGLAEQLISRYER
Sbjct 61 IARAVEHIGMIEVAQLRARVSALSRQRRGPETTAVVLVDLLVGEMSSPGLAEQLISRYER 120
Query 121 HIACTRLPDLRESMRRSLRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALVEGR 180
HIACTRLPDLRESMRRSLRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALVEGR
Sbjct 121 HIACTRLPDLRESMRRSLRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALVEGR 180
Query 181 DPRAAALATVVDLIDVLAPVDQRPVPF 207
DPRAAALATVVDLIDVLAPVDQRPVPF
Sbjct 181 DPRAAALATVVDLIDVLAPVDQRPVPF 207
>gi|340625794|ref|YP_004744246.1| hypothetical protein MCAN_07791 [Mycobacterium canettii CIPT
140010059]
gi|340003984|emb|CCC43119.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=207
Score = 394 bits (1012), Expect = 4e-108, Method: Compositional matrix adjust.
Identities = 204/207 (99%), Positives = 205/207 (99%), Gaps = 0/207 (0%)
Query 1 MGVTAAVTPKGERRRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDL 60
MGVTAAVTPKGERRRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDL
Sbjct 1 MGVTAAVTPKGERRRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDL 60
Query 61 IARAVEHIGMIEVAQLRARVSALSRRRRGPETTAVVLVDLLVGEMSSPGLAEQLISRYER 120
IARAVEHIGMIEVAQLRARVSALSRRRRGPETTAVVLVDLLVGEMSSPGLAEQLISRYER
Sbjct 61 IARAVEHIGMIEVAQLRARVSALSRRRRGPETTAVVLVDLLVGEMSSPGLAEQLISRYER 120
Query 121 HIACTRLPDLRESMRRSLRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALVEGR 180
HIACTRLPDLRESMRRSLRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALVEGR
Sbjct 121 HIACTRLPDLRESMRRSLRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALVEGR 180
Query 181 DPRAAALATVVDLIDVLAPVDQRPVPF 207
DPR AALATVVDLIDVLAPV+QRPVP
Sbjct 181 DPRVAALATVVDLIDVLAPVEQRPVPI 207
>gi|183984886|ref|YP_001853177.1| hypothetical protein MMAR_4918 [Mycobacterium marinum M]
gi|183178212|gb|ACC43322.1| conserved protein [Mycobacterium marinum M]
Length=207
Score = 377 bits (969), Expect = 4e-103, Method: Compositional matrix adjust.
Identities = 196/205 (96%), Positives = 202/205 (99%), Gaps = 0/205 (0%)
Query 1 MGVTAAVTPKGERRRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDL 60
MGVTAAVTPKGERRRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDL
Sbjct 1 MGVTAAVTPKGERRRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDL 60
Query 61 IARAVEHIGMIEVAQLRARVSALSRRRRGPETTAVVLVDLLVGEMSSPGLAEQLISRYER 120
IARAVEH+GMIEVAQLRARV+ALSRRRRGPETTA VLVDLLVG++SSPGLAEQLISRYER
Sbjct 61 IARAVEHVGMIEVAQLRARVNALSRRRRGPETTADVLVDLLVGDVSSPGLAEQLISRYER 120
Query 121 HIACTRLPDLRESMRRSLRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALVEGR 180
+IACTRLP LRESMRRSLRQRAEAVAEAIERSGRS +IELVCTLICAVDGSVVSALVEGR
Sbjct 121 NIACTRLPALRESMRRSLRQRAEAVAEAIERSGRSVRIELVCTLICAVDGSVVSALVEGR 180
Query 181 DPRAAALATVVDLIDVLAPVDQRPV 205
DPRAAALATVVDLIDVLAPVDQRPV
Sbjct 181 DPRAAALATVVDLIDVLAPVDQRPV 205
>gi|339293796|gb|AEJ45907.1| hypothetical protein CCDC5079_0717 [Mycobacterium tuberculosis
CCDC5079]
Length=190
Score = 365 bits (938), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 189/190 (99%), Positives = 190/190 (100%), Gaps = 0/190 (0%)
Query 18 LVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLIARAVEHIGMIEVAQLR 77
+VSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLIARAVEHIGMIEVAQLR
Sbjct 1 MVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLIARAVEHIGMIEVAQLR 60
Query 78 ARVSALSRRRRGPETTAVVLVDLLVGEMSSPGLAEQLISRYERHIACTRLPDLRESMRRS 137
ARVSALSRRRRGPETTAVVLVDLLVGEMSSPGLAEQLISRYERHIACTRLPDLRESMRRS
Sbjct 61 ARVSALSRRRRGPETTAVVLVDLLVGEMSSPGLAEQLISRYERHIACTRLPDLRESMRRS 120
Query 138 LRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALVEGRDPRAAALATVVDLIDVL 197
LRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALVEGRDPRAAALATVVDLIDVL
Sbjct 121 LRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALVEGRDPRAAALATVVDLIDVL 180
Query 198 APVDQRPVPF 207
APVDQRPVPF
Sbjct 181 APVDQRPVPF 190
>gi|339297436|gb|AEJ49546.1| hypothetical protein CCDC5180_0709 [Mycobacterium tuberculosis
CCDC5180]
Length=190
Score = 364 bits (935), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 188/190 (99%), Positives = 190/190 (100%), Gaps = 0/190 (0%)
Query 18 LVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLIARAVEHIGMIEVAQLR 77
+VSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLIARAVEHIGMIEVAQLR
Sbjct 1 MVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLIARAVEHIGMIEVAQLR 60
Query 78 ARVSALSRRRRGPETTAVVLVDLLVGEMSSPGLAEQLISRYERHIACTRLPDLRESMRRS 137
ARVSALSR+RRGPETTAVVLVDLLVGEMSSPGLAEQLISRYERHIACTRLPDLRESMRRS
Sbjct 61 ARVSALSRQRRGPETTAVVLVDLLVGEMSSPGLAEQLISRYERHIACTRLPDLRESMRRS 120
Query 138 LRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALVEGRDPRAAALATVVDLIDVL 197
LRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALVEGRDPRAAALATVVDLIDVL
Sbjct 121 LRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALVEGRDPRAAALATVVDLIDVL 180
Query 198 APVDQRPVPF 207
APVDQRPVPF
Sbjct 181 APVDQRPVPF 190
>gi|41406707|ref|NP_959543.1| hypothetical protein MAP0609 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41395057|gb|AAS02926.1| hypothetical protein MAP_0609 [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=205
Score = 352 bits (903), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 182/203 (90%), Positives = 190/203 (94%), Gaps = 0/203 (0%)
Query 3 VTAAVTPKGERRRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLIA 62
+TAAVTPKGERRRYALVSAAAELL EGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLIA
Sbjct 1 MTAAVTPKGERRRYALVSAAAELLAEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLIA 60
Query 63 RAVEHIGMIEVAQLRARVSALSRRRRGPETTAVVLVDLLVGEMSSPGLAEQLISRYERHI 122
RAVEHI MIEVAQLR+RVSALSRRRRGPET A VL DLLVG++S PGL EQLISRYERHI
Sbjct 61 RAVEHIAMIEVAQLRSRVSALSRRRRGPETIAEVLADLLVGDVSGPGLTEQLISRYERHI 120
Query 123 ACTRLPDLRESMRRSLRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALVEGRDP 182
ACTRLP LRE+MRRSLRQRAEAVAEAIERSGRS I+LVCTLICAVDGSVVSALVEGRDP
Sbjct 121 ACTRLPALRETMRRSLRQRAEAVAEAIERSGRSVHIDLVCTLICAVDGSVVSALVEGRDP 180
Query 183 RAAALATVVDLIDVLAPVDQRPV 205
RAAA VVDLI+VLAP+DQRPV
Sbjct 181 RAAAQGAVVDLIEVLAPIDQRPV 203
>gi|254818446|ref|ZP_05223447.1| hypothetical protein MintA_00897 [Mycobacterium intracellulare
ATCC 13950]
Length=205
Score = 345 bits (886), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 178/203 (88%), Positives = 188/203 (93%), Gaps = 0/203 (0%)
Query 3 VTAAVTPKGERRRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLIA 62
+TAAVTPKGERRRYAL+SAAAELL EGGFEAVRHRAVA RAGLPLASTTYYFSSLDDLIA
Sbjct 1 MTAAVTPKGERRRYALISAAAELLAEGGFEAVRHRAVAGRAGLPLASTTYYFSSLDDLIA 60
Query 63 RAVEHIGMIEVAQLRARVSALSRRRRGPETTAVVLVDLLVGEMSSPGLAEQLISRYERHI 122
RAVEHI MIEVAQLR+RV+ALSRRRRGPET A VL DLLVG++S PGL EQLISRYERHI
Sbjct 61 RAVEHIAMIEVAQLRSRVTALSRRRRGPETIAEVLADLLVGDVSGPGLTEQLISRYERHI 120
Query 123 ACTRLPDLRESMRRSLRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALVEGRDP 182
ACTRLP L+E+MRRSLRQRAEAVAEAIERSGRS IELVCTLICAVDG VVSALVEGRDP
Sbjct 121 ACTRLPALQETMRRSLRQRAEAVAEAIERSGRSVHIELVCTLICAVDGCVVSALVEGRDP 180
Query 183 RAAALATVVDLIDVLAPVDQRPV 205
RAAA VVDLI+VLAP+DQRPV
Sbjct 181 RAAAQGAVVDLIEVLAPIDQRPV 203
>gi|118616329|ref|YP_904661.1| hypothetical protein MUL_0488 [Mycobacterium ulcerans Agy99]
gi|118568439|gb|ABL03190.1| conserved protein [Mycobacterium ulcerans Agy99]
Length=189
Score = 343 bits (879), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 178/189 (95%), Positives = 186/189 (99%), Gaps = 0/189 (0%)
Query 3 VTAAVTPKGERRRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLIA 62
+TAAVTPKGERRRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDL+A
Sbjct 1 MTAAVTPKGERRRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLVA 60
Query 63 RAVEHIGMIEVAQLRARVSALSRRRRGPETTAVVLVDLLVGEMSSPGLAEQLISRYERHI 122
RAVEH+GMIEVAQLRARV+ALSRRRRGPETTA VLVDLLVG++SSPGLAEQLISRYER+I
Sbjct 61 RAVEHVGMIEVAQLRARVNALSRRRRGPETTADVLVDLLVGDVSSPGLAEQLISRYERNI 120
Query 123 ACTRLPDLRESMRRSLRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALVEGRDP 182
ACTRLP LRESMRRSLRQRAEAVAEAIERSGRS +IELVCTLICAVDGSVVSALVEGRDP
Sbjct 121 ACTRLPALRESMRRSLRQRAEAVAEAIERSGRSVRIELVCTLICAVDGSVVSALVEGRDP 180
Query 183 RAAALATVV 191
RAAALATVV
Sbjct 181 RAAALATVV 189
>gi|296166477|ref|ZP_06848909.1| transcriptional regulator [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295898238|gb|EFG77812.1| transcriptional regulator [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=204
Score = 322 bits (825), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 165/187 (89%), Positives = 177/187 (95%), Gaps = 0/187 (0%)
Query 19 VSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLIARAVEHIGMIEVAQLRA 78
+SAAAELL EGGFEAV HRAVARRAGLPLASTTYYFSSLDDLIARAVEHI MIEVAQLR+
Sbjct 1 MSAAAELLAEGGFEAVGHRAVARRAGLPLASTTYYFSSLDDLIARAVEHIAMIEVAQLRS 60
Query 79 RVSALSRRRRGPETTAVVLVDLLVGEMSSPGLAEQLISRYERHIACTRLPDLRESMRRSL 138
RV+ALSRRRRGPET A VLVDLLVG++SSPGL++QLISRYERHIACTRLP LRE+MRRSL
Sbjct 61 RVAALSRRRRGPETIAEVLVDLLVGDVSSPGLSDQLISRYERHIACTRLPALRETMRRSL 120
Query 139 RQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALVEGRDPRAAALATVVDLIDVLA 198
RQRAEAVAEAIERSGR+ +ELVCTLICAVDG VVSALVEGRDPRAAA+ TVVDLIDVLA
Sbjct 121 RQRAEAVAEAIERSGRTVHLELVCTLICAVDGCVVSALVEGRDPRAAAVGTVVDLIDVLA 180
Query 199 PVDQRPV 205
P+DQRPV
Sbjct 181 PIDQRPV 187
>gi|254231090|ref|ZP_04924417.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|124600149|gb|EAY59159.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
Length=220
Score = 322 bits (824), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 170/180 (95%), Positives = 172/180 (96%), Gaps = 2/180 (1%)
Query 1 MGVTAAVTPKGERRRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDL 60
MGVTAAVTPKGERRRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSL+DL
Sbjct 1 MGVTAAVTPKGERRRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLEDL 60
Query 61 IARAVEHIGMIEVAQLRARVSALSRRRRGPETTAVVLVDLLVGEMSSPGLAEQLISRYER 120
IARAVEHIGMIEVAQLRARVSALSRRRRGPETTAVVLVDLLVGEMSSPGLAEQLISRYER
Sbjct 61 IARAVEHIGMIEVAQLRARVSALSRRRRGPETTAVVLVDLLVGEMSSPGLAEQLISRYER 120
Query 121 HIACTRLPDLRESMRRSLRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALVEGR 180
HIACTRLPDLRESMRRSLRQRAEAVAEAIERSGRSAQIELVCTLICA G + L GR
Sbjct 121 HIACTRLPDLRESMRRSLRQRAEAVAEAIERSGRSAQIELVCTLICA--GRRIGGLGAGR 178
>gi|118464444|ref|YP_879995.1| TetR family transcriptional regulator [Mycobacterium avium 104]
gi|254773658|ref|ZP_05215174.1| hypothetical protein MaviaA2_03147 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|118165731|gb|ABK66628.1| transcriptional regulator, TetR family protein [Mycobacterium
avium 104]
gi|336458296|gb|EGO37275.1| hypothetical protein MAPs_13970 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=189
Score = 322 bits (824), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 166/187 (89%), Positives = 174/187 (94%), Gaps = 0/187 (0%)
Query 19 VSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLIARAVEHIGMIEVAQLRA 78
+SAAAELL EGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLIARAVEHI MIEVAQLR+
Sbjct 1 MSAAAELLAEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLIARAVEHIAMIEVAQLRS 60
Query 79 RVSALSRRRRGPETTAVVLVDLLVGEMSSPGLAEQLISRYERHIACTRLPDLRESMRRSL 138
RVSALSRRRRGPET A VL DLLVG++S PGL EQLISRYERHIACTRLP LRE+MRRSL
Sbjct 61 RVSALSRRRRGPETIAEVLADLLVGDVSGPGLTEQLISRYERHIACTRLPALRETMRRSL 120
Query 139 RQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALVEGRDPRAAALATVVDLIDVLA 198
RQRAEAVAEAIERSGRS I+LVCTLICAVDGSVVSALVEGRDPRAAA VVDLI+VLA
Sbjct 121 RQRAEAVAEAIERSGRSVHIDLVCTLICAVDGSVVSALVEGRDPRAAAQGAVVDLIEVLA 180
Query 199 PVDQRPV 205
P+DQRPV
Sbjct 181 PIDQRPV 187
>gi|342862181|ref|ZP_08718823.1| hypothetical protein MCOL_24946 [Mycobacterium colombiense CECT
3035]
gi|342130259|gb|EGT83579.1| hypothetical protein MCOL_24946 [Mycobacterium colombiense CECT
3035]
Length=174
Score = 290 bits (741), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 149/172 (87%), Positives = 158/172 (92%), Gaps = 0/172 (0%)
Query 34 VRHRAVARRAGLPLASTTYYFSSLDDLIARAVEHIGMIEVAQLRARVSALSRRRRGPETT 93
+RHRAVARRAGLPLASTTYYFSSLDDLIARAVEHI MIEVAQLR+RVS LSRRRRGPET
Sbjct 1 MRHRAVARRAGLPLASTTYYFSSLDDLIARAVEHIAMIEVAQLRSRVSGLSRRRRGPETI 60
Query 94 AVVLVDLLVGEMSSPGLAEQLISRYERHIACTRLPDLRESMRRSLRQRAEAVAEAIERSG 153
A VL DLLVG+++ PG +QLISRYERHIACTRLP LRE+MRRSLRQRAEAVAEAIERSG
Sbjct 61 AEVLADLLVGDVAGPGRTDQLISRYERHIACTRLPALRETMRRSLRQRAEAVAEAIERSG 120
Query 154 RSAQIELVCTLICAVDGSVVSALVEGRDPRAAALATVVDLIDVLAPVDQRPV 205
RS IELVCTLICAVDGSVVSALVEGRDPRAAA VVDLI+VLAP+DQRPV
Sbjct 121 RSVHIELVCTLICAVDGSVVSALVEGRDPRAAAQGAVVDLIEVLAPIDQRPV 172
>gi|333992230|ref|YP_004524844.1| hypothetical protein JDM601_3590 [Mycobacterium sp. JDM601]
gi|333488198|gb|AEF37590.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=206
Score = 276 bits (706), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 145/201 (73%), Positives = 169/201 (85%), Gaps = 1/201 (0%)
Query 6 AVTPKGERRRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLIARAV 65
AVTPKGERRRYAL+SAAAELL EGGFEAVRHRAVA+RAGLPLASTTYYFSSL+DLIA AV
Sbjct 4 AVTPKGERRRYALISAAAELLREGGFEAVRHRAVAQRAGLPLASTTYYFSSLEDLIASAV 63
Query 66 EHIGMIEVAQLRARVSALSRRRRGPETTAVVLVDLLVGEMSSPGLAEQLISRYERHIACT 125
EHIGM+EVAQLRAR++ LSRRRR ETTA +LVDLLVGE ++EQLISRYER I C
Sbjct 64 EHIGMLEVAQLRARIAGLSRRRRSAETTADMLVDLLVGEEHGSQVSEQLISRYERSIVCA 123
Query 126 RLPDLRESMRRSLRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALVEGRD-PRA 184
R P LRE RR L QR++AVAEA+ERSGR A++E+ L+C VDG+V++ALV+ R PRA
Sbjct 124 RQPALREIQRRILHQRSDAVAEAVERSGRIARVEMAHALVCMVDGAVMAALVDDRQGPRA 183
Query 185 AALATVVDLIDVLAPVDQRPV 205
A A V+D+ID+LAP+DQR V
Sbjct 184 VARAAVIDVIDLLAPLDQRAV 204
>gi|118469622|ref|YP_890077.1| TetR family transcriptional regulator [Mycobacterium smegmatis
str. MC2 155]
gi|118170909|gb|ABK71805.1| transcriptional regulator, TetR family protein [Mycobacterium
smegmatis str. MC2 155]
Length=206
Score = 273 bits (699), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 145/204 (72%), Positives = 171/204 (84%), Gaps = 1/204 (0%)
Query 3 VTAAVTPKGERRRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLIA 62
+TAAVTPKGERRRYAL+ AAAELL EGGF+AVRHRAVARRAGLPLASTTYYFSSLDDLIA
Sbjct 1 MTAAVTPKGERRRYALIRAAAELLCEGGFDAVRHRAVARRAGLPLASTTYYFSSLDDLIA 60
Query 63 RAVEHIGMIEVAQLRARVSALSRRRRGPETTAVVLVDLLVGEMSSPGLAEQLISRYERHI 122
+AVE+IGM E QLR V++LSRRRRG E+TA +LVDLLVG+ + E+LISRYER+I
Sbjct 61 KAVEYIGMREANQLRESVASLSRRRRGAESTAEILVDLLVGDEPGARVTEELISRYERYI 120
Query 123 ACTRLPDLRESMRRSLRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALV-EGRD 181
AC R P LR+ RR L+QR +AV EA+ERSGRS + ELV L+CAVDG+VV++LV EG
Sbjct 121 ACARQPGLRDIQRRILQQRTDAVVEAVERSGRSVRAELVTALVCAVDGAVVASLVDEGDG 180
Query 182 PRAAALATVVDLIDVLAPVDQRPV 205
PRA+A AT++D+IDVLAPVD R V
Sbjct 181 PRASARATLIDVIDVLAPVDDRAV 204
>gi|145222202|ref|YP_001132880.1| TetR family transcriptional regulator [Mycobacterium gilvum PYR-GCK]
gi|315442641|ref|YP_004075520.1| hypothetical protein Mspyr1_09960 [Mycobacterium sp. Spyr1]
gi|145214688|gb|ABP44092.1| putative transcriptional regulator, TetR family [Mycobacterium
gilvum PYR-GCK]
gi|315260944|gb|ADT97685.1| uncharacterized conserved protein [Mycobacterium sp. Spyr1]
Length=202
Score = 269 bits (688), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 144/202 (72%), Positives = 169/202 (84%), Gaps = 2/202 (0%)
Query 1 MGVTAAVTPKGERRRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDL 60
+ VTAAVTPKGERRRYALVSAAA+LL EGGF+AVRHRAVARRAGLPLASTTYYFSSLDDL
Sbjct 2 LKVTAAVTPKGERRRYALVSAAADLLCEGGFDAVRHRAVARRAGLPLASTTYYFSSLDDL 61
Query 61 IARAVEHIGMIEVAQLRARVSALSRRRRGPETTAVVLVDLLVGEMSSPGLAEQLISRYER 120
IA AVEH+G E QLR RV+ALSRRRRG E+TA +LVDLLVG+ + + EQ+ISRYER
Sbjct 62 IANAVEHVGSRETEQLRHRVAALSRRRRGAESTADILVDLLVGD-NPERVTEQMISRYER 120
Query 121 HIACTRLPDLRESMRRSLRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALV-EG 179
+IAC R P LR+ RR LRQR++AV E +ERSGRS + ELV L+CAVDG+VV+ALV +G
Sbjct 121 YIACARQPGLRDIQRRILRQRSDAVVEVVERSGRSVRAELVTALVCAVDGAVVAALVGDG 180
Query 180 RDPRAAALATVVDLIDVLAPVD 201
PRA A AT++D+IDVLAP +
Sbjct 181 DGPRATARATLIDVIDVLAPFN 202
>gi|120406096|ref|YP_955925.1| TetR family transcriptional regulator [Mycobacterium vanbaalenii
PYR-1]
gi|119958914|gb|ABM15919.1| putative transcriptional regulator, TetR family [Mycobacterium
vanbaalenii PYR-1]
Length=199
Score = 266 bits (681), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 141/200 (71%), Positives = 167/200 (84%), Gaps = 2/200 (1%)
Query 3 VTAAVTPKGERRRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLIA 62
+TAAVTPKGERRRYALVSAAA+LL EGGF+AVRHRAVARRAGLPLASTTYYFSSLDDLIA
Sbjct 1 MTAAVTPKGERRRYALVSAAADLLCEGGFDAVRHRAVARRAGLPLASTTYYFSSLDDLIA 60
Query 63 RAVEHIGMIEVAQLRARVSALSRRRRGPETTAVVLVDLLVGEMSSPGLAEQLISRYERHI 122
+AVEH+G E QLR RV LSRRRRG E+TA ++VDLLVG+ + + EQ+ISRYER+I
Sbjct 61 KAVEHVGTRESEQLRTRVETLSRRRRGAESTADIIVDLLVGD-NPERVTEQIISRYERYI 119
Query 123 ACTRLPDLRESMRRSLRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALV-EGRD 181
AC R P LR+ RR LRQR++AV E +ERSGRS + ELV L+CAVDG+VV+ALV +G
Sbjct 120 ACARQPGLRDIQRRILRQRSDAVVEVVERSGRSVRTELVTALVCAVDGAVVAALVGDGEG 179
Query 182 PRAAALATVVDLIDVLAPVD 201
PRA A AT++D+IDVLAP +
Sbjct 180 PRATARATLIDVIDVLAPFN 199
>gi|108801532|ref|YP_641729.1| TetR family transcriptional regulator [Mycobacterium sp. MCS]
gi|119870686|ref|YP_940638.1| TetR family transcriptional regulator [Mycobacterium sp. KMS]
gi|108771951|gb|ABG10673.1| putative transcriptional regulator, TetR family [Mycobacterium
sp. MCS]
gi|119696775|gb|ABL93848.1| putative transcriptional regulator, TetR family [Mycobacterium
sp. KMS]
Length=203
Score = 252 bits (644), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 136/199 (69%), Positives = 162/199 (82%), Gaps = 1/199 (0%)
Query 3 VTAAVTPKGERRRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLIA 62
VTAAVTPKGERRRYALVSAAA+LL EGGF+AVRHRAVARRAGLPLASTTYYFSSLDDLI
Sbjct 4 VTAAVTPKGERRRYALVSAAADLLCEGGFDAVRHRAVARRAGLPLASTTYYFSSLDDLIV 63
Query 63 RAVEHIGMIEVAQLRARVSALSRRRRGPETTAVVLVDLLVGEMSSPGLAEQLISRYERHI 122
+AVE+ G E +L+ RV+ALSRRRRG E TA VLVDLL+G+ E+LISRYER+I
Sbjct 64 KAVEYEGSREAERLQQRVAALSRRRRGAEATADVLVDLLLGDAPGTRGGEELISRYERYI 123
Query 123 ACTRLPDLRESMRRSLRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALV-EGRD 181
AC R P LR++ RR LRQR +AV +ERSGR+ + + + L+CAVDG+VV+ALV +G
Sbjct 124 ACARQPALRDAQRRILRQRTDAVVAVMERSGRTVRADFLTALVCAVDGAVVAALVGDGDG 183
Query 182 PRAAALATVVDLIDVLAPV 200
PRA A AT++D+IDVLAPV
Sbjct 184 PRATARATLIDVIDVLAPV 202
>gi|126437517|ref|YP_001073208.1| TetR family transcriptional regulator [Mycobacterium sp. JLS]
gi|126237317|gb|ABO00718.1| putative transcriptional regulator, TetR family [Mycobacterium
sp. JLS]
Length=203
Score = 251 bits (641), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 136/199 (69%), Positives = 161/199 (81%), Gaps = 1/199 (0%)
Query 3 VTAAVTPKGERRRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLIA 62
VTAAVTPKGERRRYALVSAAA+LL EGGF+AVRHRAVARRAGLPLASTTYYFSSLDDLI
Sbjct 4 VTAAVTPKGERRRYALVSAAADLLCEGGFDAVRHRAVARRAGLPLASTTYYFSSLDDLIV 63
Query 63 RAVEHIGMIEVAQLRARVSALSRRRRGPETTAVVLVDLLVGEMSSPGLAEQLISRYERHI 122
+AVE+ G E +L+ RV+ALSRRRRG E TA VLVDLL+G+ E+LISRYER+I
Sbjct 64 KAVEYEGSREAERLQQRVAALSRRRRGAEATADVLVDLLLGDAPGTRGGEELISRYERYI 123
Query 123 ACTRLPDLRESMRRSLRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALV-EGRD 181
AC R P LR+ RR LRQR +AV +ERSGR+ + + + L+CAVDG+VV+ALV +G
Sbjct 124 ACARQPALRDVQRRILRQRTDAVVAVMERSGRTVRADFLTALVCAVDGAVVAALVGDGDG 183
Query 182 PRAAALATVVDLIDVLAPV 200
PRA A AT++D+IDVLAPV
Sbjct 184 PRATARATLIDVIDVLAPV 202
>gi|240172807|ref|ZP_04751466.1| hypothetical protein MkanA1_26077 [Mycobacterium kansasii ATCC
12478]
Length=138
Score = 231 bits (588), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 120/136 (89%), Positives = 126/136 (93%), Gaps = 0/136 (0%)
Query 70 MIEVAQLRARVSALSRRRRGPETTAVVLVDLLVGEMSSPGLAEQLISRYERHIACTRLPD 129
MIEVAQLRARV+AL RRRRGPETT VLVDLLVG++ PGLAEQLISRYERHIACTRLP
Sbjct 1 MIEVAQLRARVNALPRRRRGPETTGEVLVDLLVGDVDGPGLAEQLISRYERHIACTRLPA 60
Query 130 LRESMRRSLRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALVEGRDPRAAALAT 189
LRESMRR+LRQRAE VAEAIERSGRS +IELVCTLICAVDGSVVSALVEGRD R AALAT
Sbjct 61 LRESMRRNLRQRAEGVAEAIERSGRSVRIELVCTLICAVDGSVVSALVEGRDARGAALAT 120
Query 190 VVDLIDVLAPVDQRPV 205
VVDLIDVLAPVDQRP+
Sbjct 121 VVDLIDVLAPVDQRPI 136
>gi|169627788|ref|YP_001701437.1| TetR family transcriptional regulator [Mycobacterium abscessus
ATCC 19977]
gi|169239755|emb|CAM60783.1| Putative transcription regulator, TetR family [Mycobacterium
abscessus]
Length=235
Score = 187 bits (475), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 112/197 (57%), Positives = 141/197 (72%), Gaps = 6/197 (3%)
Query 8 TPKGERRRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLIARAVEH 67
TPKGERRR AL+SAAA+LL + G +AVRHRAVA+RAGLPLASTTYYFSSL+DLIARAVEH
Sbjct 22 TPKGERRRRALISAAADLLRDNGIDAVRHRAVAQRAGLPLASTTYYFSSLEDLIARAVEH 81
Query 68 IGMIEVAQLRARVSALSRRRRGPETTAVVLVDLLVGEMSSPGL--AEQLISRYERHIACT 125
G E+ Q++ R+S + RRRG TA +V+LL G +PG EQL+SRYER +AC+
Sbjct 82 AGTHELEQIQERLSLVQYRRRGAAATAEAVVELLFG---TPGFGGGEQLVSRYERELACS 138
Query 126 RLPDLRESMRRSLRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALVEGRDPRAA 185
R P+LRE +R QR +AVA+ + RSGRS + V LI VDG++V AL E A
Sbjct 139 RHPELREVQQRLREQRDDAVAQVVRRSGRSIDNDHVAVLISTVDGAMVGALTEAAASPTA 198
Query 186 ALATV-VDLIDVLAPVD 201
+ VD+IDVLAP++
Sbjct 199 TATAMLVDVIDVLAPLE 215
>gi|226364287|ref|YP_002782069.1| TetR family transcriptional regulator [Rhodococcus opacus B4]
gi|226242776|dbj|BAH53124.1| putative TetR family transcriptional regulator [Rhodococcus opacus
B4]
Length=209
Score = 176 bits (446), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 113/205 (56%), Positives = 144/205 (71%), Gaps = 4/205 (1%)
Query 3 VTAAVTPKGERRRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLIA 62
+++A TPKGERRR ALV AAA+LL EGGF+AVRHR+VA RA LPLASTTYYF SLDDLIA
Sbjct 1 MSSAATPKGERRRQALVEAAADLLLEGGFDAVRHRSVATRADLPLASTTYYFESLDDLIA 60
Query 63 RAVEHIGMIEVAQLRARVSALSRRRRGPETTAVVLVDLLVGE-MSSPGLAEQLISRYERH 121
+AVE G ++A +R RV ++ RRRG E+T +L+DLLVG + S E+LISRYER
Sbjct 61 KAVECNGNRDLAVMRGRVEDVTHRRRGRESTVDLLLDLLVGPALISEDCRERLISRYERF 120
Query 122 IACTRLPDLRESMRRSLRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALVEGRD 181
AC R P+LRE R Q + + EA+ RS R + E + L+ VDG+VV+AL E D
Sbjct 121 TACARRPELREVQLRLRAQLDDVLTEALRRSDRDVRQEQLRRLVAVVDGAVVTALGE-HD 179
Query 182 P--RAAALATVVDLIDVLAPVDQRP 204
P RA A A ++D++DV+AP RP
Sbjct 180 PDLRALARAMLLDVVDVVAPALDRP 204
>gi|111021757|ref|YP_704729.1| hypothetical protein RHA1_ro04786 [Rhodococcus jostii RHA1]
gi|110821287|gb|ABG96571.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=209
Score = 175 bits (444), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 112/205 (55%), Positives = 145/205 (71%), Gaps = 4/205 (1%)
Query 3 VTAAVTPKGERRRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLIA 62
+++A TPKGERRR ALV AAA+LL EGGF+AVRHR+VA RA LPLASTTYYF SLDDLIA
Sbjct 1 MSSAATPKGERRRQALVEAAADLLLEGGFDAVRHRSVATRADLPLASTTYYFESLDDLIA 60
Query 63 RAVEHIGMIEVAQLRARVSALSRRRRGPETTAVVLVDLLVGE-MSSPGLAEQLISRYERH 121
+AVE G ++A +R+RV ++ RRRG E+T +L+DLLVG + S E+LISRYER
Sbjct 61 KAVECNGNRDLAVMRSRVDDVTHRRRGRESTVDLLLDLLVGPALISEDCRERLISRYERF 120
Query 122 IACTRLPDLRESMRRSLRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALVEGRD 181
AC R P+LRE R Q + + EA+ RS R + E + L+ VDG++V+AL E D
Sbjct 121 TACARRPELREVQLRLRAQLDDILTEALRRSDRDVRQEQLRRLVAVVDGALVTALGE-HD 179
Query 182 P--RAAALATVVDLIDVLAPVDQRP 204
P RA A A ++D++DV+AP RP
Sbjct 180 PDLRALARAMLLDVVDVVAPALDRP 204
>gi|226304513|ref|YP_002764471.1| TetR family transcriptional regulator [Rhodococcus erythropolis
PR4]
gi|226183628|dbj|BAH31732.1| putative TetR family transcriptional regulator [Rhodococcus erythropolis
PR4]
Length=203
Score = 175 bits (443), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 109/199 (55%), Positives = 143/199 (72%), Gaps = 2/199 (1%)
Query 3 VTAAVTPKGERRRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLIA 62
V++A TPKGERRR ALV++AAELL EGGF+AVRHRAVA RA LPLASTTYYF SLDDLIA
Sbjct 2 VSSAATPKGERRRQALVASAAELLLEGGFDAVRHRAVATRADLPLASTTYYFDSLDDLIA 61
Query 63 RAVEHIGMIEVAQLRARVSALSRRRRGPETTAVVLVDLLVG-EMSSPGLAEQLISRYERH 121
AVE G ++ +RARV+A+++RRRG E+T +LV+LL+G E P E+LISRYER
Sbjct 62 CAVELNGNADMEAMRARVAAVTQRRRGAESTVELLVELLLGDEEKRPESRERLISRYERF 121
Query 122 IACTRLPDLRESMRRSLRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALVE-GR 180
+AC R P LR+ R Q + + +A+ RSGR+A + L+ VDG++++AL E
Sbjct 122 VACARHPALRDVQLRLRAQLDDLLTDALRRSGRTAPEGQLRRLVAMVDGAMITALGEYDP 181
Query 181 DPRAAALATVVDLIDVLAP 199
DPR A +++ IDV+AP
Sbjct 182 DPRGLARGMLLESIDVMAP 200
>gi|229494419|ref|ZP_04388182.1| transcriptional regulator, TetR family protein [Rhodococcus erythropolis
SK121]
gi|229318781|gb|EEN84639.1| transcriptional regulator, TetR family protein [Rhodococcus erythropolis
SK121]
Length=201
Score = 175 bits (443), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 109/199 (55%), Positives = 143/199 (72%), Gaps = 2/199 (1%)
Query 3 VTAAVTPKGERRRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLIA 62
+++A TPKGERRR ALV++AAELL EGGF+AVRHRAVA RA LPLASTTYYF SLDDLIA
Sbjct 1 MSSAATPKGERRRQALVASAAELLLEGGFDAVRHRAVATRADLPLASTTYYFDSLDDLIA 60
Query 63 RAVEHIGMIEVAQLRARVSALSRRRRGPETTAVVLVDLLVG-EMSSPGLAEQLISRYERH 121
AVE G ++ +RARV+A+++RRRG E+T +LV+LL+G E P E+LISRYER
Sbjct 61 CAVELNGNADMEAMRARVAAVTQRRRGAESTVELLVELLLGDEEKRPESRERLISRYERF 120
Query 122 IACTRLPDLRESMRRSLRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALVE-GR 180
+AC R P LR+ R Q + + +A+ RSGRSA + L+ VDG++++AL E
Sbjct 121 VACARHPALRDVQLRLRAQLDDLLTDALRRSGRSAPEGQLRRLVAMVDGAMITALGEYDP 180
Query 181 DPRAAALATVVDLIDVLAP 199
DPR A +++ IDV+AP
Sbjct 181 DPRGLARGMLLESIDVMAP 199
>gi|325674840|ref|ZP_08154527.1| transcriptional regulator [Rhodococcus equi ATCC 33707]
gi|325554426|gb|EGD24101.1| transcriptional regulator [Rhodococcus equi ATCC 33707]
Length=203
Score = 170 bits (431), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 110/199 (56%), Positives = 135/199 (68%), Gaps = 2/199 (1%)
Query 3 VTAAVTPKGERRRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLIA 62
+T+A TPKGERRR ALV+AAA+LL EGGF+AVRHRAVA RAGLPLASTTYYF SLD+LIA
Sbjct 1 MTSAATPKGERRRQALVTAAADLLLEGGFDAVRHRAVATRAGLPLASTTYYFGSLDELIA 60
Query 63 RAVEHIGMIEVAQLRARVSALSRRRRGPETTAVVLVDLLVG-EMSSPGLAEQLISRYERH 121
AVEH G E+ +R R+ +++RRRG E T ++VDLLVG + G E+LI+RYER
Sbjct 61 LAVEHNGNRELDAMRERIDDVTQRRRGVEATVDLIVDLLVGPDDEGDGARERLIARYERF 120
Query 122 IACTRLPDLRESMRRSLRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALVE-GR 180
+A R P LRE R Q + + E + RSGR + + L+ VDG VV AL E
Sbjct 121 VASARHPGLREVQLRLRAQLDDLLTEVLRRSGREVRETQLRRLVAVVDGVVVGALSEVDP 180
Query 181 DPRAAALATVVDLIDVLAP 199
DPR A A + DLID AP
Sbjct 181 DPRGMARAMLSDLIDDFAP 199
>gi|256380872|ref|YP_003104532.1| TetR family transcriptional regulator [Actinosynnema mirum DSM
43827]
gi|255925175|gb|ACU40686.1| transcriptional regulator, TetR family [Actinosynnema mirum DSM
43827]
Length=196
Score = 152 bits (383), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 94/185 (51%), Positives = 117/185 (64%), Gaps = 1/185 (0%)
Query 3 VTAAVTPKGERRRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLIA 62
+TAA TPKG RRR ALV AAAELL EGGF A+RHRAVA RAGLPLASTTYYF S+DDL+
Sbjct 1 MTAAATPKGVRRRQALVEAAAELLVEGGFAALRHRAVAERAGLPLASTTYYFDSIDDLVT 60
Query 63 RAVEHIGMIEVAQLRARVSALSRRRRGPETTAVVLVDLLVGEMSSPGLAEQLISRYERHI 122
A+EH G +E+A+ +AR+ L ET ++++LL+G AE ++ RYER I
Sbjct 61 AALEHHGDLELARGKARLDELDPDDCDGETVTDLVLELLLGPPGGEQDAEAVVLRYERLI 120
Query 123 ACTRLPDLRESMRRSLRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALVE-GRD 181
A R P LR M R + + R+GR E V LI VDG+VV+AL+E D
Sbjct 121 ATGRRPYLRPLMHRQKSALHGLILDIFARAGRRVGPERVEELIALVDGAVVNALIEVNPD 180
Query 182 PRAAA 186
PR A
Sbjct 181 PRGVA 185
>gi|54022525|ref|YP_116767.1| hypothetical protein nfa5580 [Nocardia farcinica IFM 10152]
gi|54014033|dbj|BAD55403.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=218
Score = 147 bits (372), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 107/206 (52%), Positives = 139/206 (68%), Gaps = 2/206 (0%)
Query 3 VTAAVTPKGERRRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLIA 62
+ A TPKGERRR ALV+AAAELL EGGF+AVRHR+VA RA LPLASTTYYF SL+DLIA
Sbjct 1 MITATTPKGERRRQALVAAAAELLLEGGFDAVRHRSVATRADLPLASTTYYFESLEDLIA 60
Query 63 RAVEHIGMIEVAQLRARVSALSRRRRGPETTAVVLVDLLV-GEMSSPGLAEQLISRYERH 121
RAVE G E+ +R R+ +S RRRG E T +++DLL+ G+ QLI+RYER
Sbjct 61 RAVEFSGNAELEAMRRRIGEVSHRRRGAEATVELVLDLLIGGDWQDEAARGQLIARYERS 120
Query 122 IACTRLPDLRESMRRSLRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALVEGR- 180
+A R P+LRE R Q E +A+ + RS R + E + L+ VDG+VV+AL E
Sbjct 121 VASARHPELREVQLRLRAQLEELLADVLRRSDRGVRAEHLRRLVAVVDGAVVAALTENDP 180
Query 181 DPRAAALATVVDLIDVLAPVDQRPVP 206
DPR A A ++++ID++AP + P P
Sbjct 181 DPRRMARAALLEVIDIVAPPLRSPGP 206
>gi|312138252|ref|YP_004005588.1| tetr family transcriptional regulator [Rhodococcus equi 103S]
gi|311887591|emb|CBH46903.1| putative TetR family transcriptional regulator [Rhodococcus equi
103S]
Length=187
Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/183 (54%), Positives = 121/183 (67%), Gaps = 2/183 (1%)
Query 19 VSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLIARAVEHIGMIEVAQLRA 78
++AAA+LL EGGF+AVRHRAVA RAGLPLASTTYYF SLD+LIA AVEH G E+ +R
Sbjct 1 MTAAADLLLEGGFDAVRHRAVATRAGLPLASTTYYFGSLDELIALAVEHNGNRELDAMRE 60
Query 79 RVSALSRRRRGPETTAVVLVDLLVG-EMSSPGLAEQLISRYERHIACTRLPDLRESMRRS 137
R+ +++RRRG E T ++VDLLVG + G E+LI+RYER +A R P LRE R
Sbjct 61 RIDDVTQRRRGVEATVDLIVDLLVGPDDEGDGARERLIARYERFVASARHPGLREVQLRL 120
Query 138 LRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALVE-GRDPRAAALATVVDLIDV 196
Q + + E + RSGR + + L+ VDG VV AL E DPR A A + DLID
Sbjct 121 RAQLDDLLTEVLRRSGREVRETQLRRLVAVVDGVVVGALSEVDPDPRGMARAMLSDLIDD 180
Query 197 LAP 199
AP
Sbjct 181 FAP 183
>gi|134103580|ref|YP_001109241.1| TetR family transcriptional regulator [Saccharopolyspora erythraea
NRRL 2338]
gi|133916203|emb|CAM06316.1| putative transcriptional regulator, TetR family [Saccharopolyspora
erythraea NRRL 2338]
Length=193
Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 95/185 (52%), Positives = 118/185 (64%), Gaps = 1/185 (0%)
Query 3 VTAAVTPKGERRRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLIA 62
+T A TPKGERRR ALV AAA+LL EGGF+A+RHRAVA RAGLPLASTTYYFSSLDDL++
Sbjct 1 MTTASTPKGERRRQALVVAAAQLLAEGGFDAIRHRAVADRAGLPLASTTYYFSSLDDLVS 60
Query 63 RAVEHIGMIEVAQLRARVSALSRRRRGPETTAVVLVDLLVGEMSSPGLAEQLISRYERHI 122
AVE G E+A R ++ L R ET +++DLL+G S G E ++ RYER +
Sbjct 61 AAVEFEGRQELAAARECLAGLGDERLPAETVIDLILDLLLGSRSRDGGVEPVLLRYERLV 120
Query 123 ACTRLPDLRESMRRSLRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALVEGR-D 181
R P L +R + E V E +ER G + E V VDG+VV+AL+E D
Sbjct 121 GTPRRPYLAPLIRELNAELQELVREILERGGAAGGPEQVRHHFALVDGAVVNALIESDPD 180
Query 182 PRAAA 186
PR AA
Sbjct 181 PRGAA 185
>gi|300790872|ref|YP_003771163.1| TetR family transcriptional regulator [Amycolatopsis mediterranei
U32]
gi|299800386|gb|ADJ50761.1| TetR family transcriptional regulator [Amycolatopsis mediterranei
U32]
gi|340532566|gb|AEK47771.1| TetR family transcriptional regulator [Amycolatopsis mediterranei
S699]
Length=204
Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 94/177 (54%), Positives = 116/177 (66%), Gaps = 2/177 (1%)
Query 3 VTAAVTPKGERRRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLIA 62
+TAA TPKGERRR ALV AAA+LL EGGF+AVRHRAVA RAGLPLASTTYYF SL+DL+
Sbjct 1 MTAATTPKGERRRAALVEAAAKLLVEGGFDAVRHRAVAERAGLPLASTTYYFDSLEDLVT 60
Query 63 RAVEHIGMIEVAQLRARVSALSRRRRGPETTAVVLVDLLVGEMS-SPGL-AEQLISRYER 120
AVEH E+A R R+ L+ R RG + T +++DLL+G S P AE ++ RYER
Sbjct 61 AAVEHHSNAELATGRRRLEELATRNRGVQATVDLVLDLLLGPGSGDPAADAEAVLLRYER 120
Query 121 HIACTRLPDLRESMRRSLRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALV 177
+A R P LR MR Q E + E RSG + L+ VDG+VV+AL+
Sbjct 121 LVATGRRPYLRPLMRTLSAQLNELLTEIFARSGTPVTETELERLVALVDGAVVNALI 177
>gi|262200834|ref|YP_003272042.1| TetR family transcriptional regulator [Gordonia bronchialis DSM
43247]
gi|262084181|gb|ACY20149.1| regulatory protein TetR [Gordonia bronchialis DSM 43247]
Length=197
Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 91/198 (46%), Positives = 120/198 (61%), Gaps = 4/198 (2%)
Query 3 VTAAVTPKGERRRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLIA 62
+T+A TPKG RRR L+ AA LL EGGF+AVRHRAVA RA LPLASTTYYF+SLDDL+A
Sbjct 1 MTSAATPKGTRRRSRLIEAAGALLLEGGFDAVRHRAVAERAQLPLASTTYYFASLDDLMA 60
Query 63 RAVEHIGMIEVAQLRARVSALSRRRRGPETTAVVLVDLLVGEMSSPGLAEQLISRYERHI 122
A ++ + + R A+ RRRRG TA VL ++ VGE +S E+L +RYE
Sbjct 61 EAAAYLCRNDERCIAERTDAVPRRRRGNGATAGVLAEVFVGEATS---IEELAARYEMIA 117
Query 123 ACTRLPDLRESMRRSLRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALVEGR-D 181
R P LRE + + A ++ + RSGR A+ V LI DG++V AL +
Sbjct 118 LAARYPRLREVVTIRRQTLATHHSDVLTRSGRVAEPTHVNQLIAIEDGAIVGALGQSSIS 177
Query 182 PRAAALATVVDLIDVLAP 199
P A + +++DVLAP
Sbjct 178 PMVATRDALHEVVDVLAP 195
>gi|302531080|ref|ZP_07283422.1| TetR family transcriptional regulator [Streptomyces sp. AA4]
gi|302439975|gb|EFL11791.1| TetR family transcriptional regulator [Streptomyces sp. AA4]
Length=207
Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 96/185 (52%), Positives = 121/185 (66%), Gaps = 3/185 (1%)
Query 5 AAVTPKGERRRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLIARA 64
AA TPKGERRR ALV AAAELL EGGF+AVRHRAVA RAGLPLASTTYYF SL++L+ A
Sbjct 10 AATTPKGERRRAALVEAAAELLAEGGFDAVRHRAVAERAGLPLASTTYYFDSLEELVTAA 69
Query 65 VEHIGMIEVAQLRARVSALSRRRRGPETTAVVLVDLLVGEMSSP--GLAEQLISRYERHI 122
VEH G E+A R ++ L+ R RG + T +++D+L+G S AE ++ RYER +
Sbjct 70 VEHHGQTELANGRRQLEDLTTRNRGVQATVELVLDMLLGPQSGDPEADAEAVLLRYERLV 129
Query 123 ACTRLPDLRESMRRSLRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALVE-GRD 181
A R P LR MR +Q E + E RSG + + L+ VDG+VV+AL+
Sbjct 130 ATGRRPYLRPLMRTLSQQLNELLTEIFARSGTPVAKDELDRLVALVDGAVVNALIAVDPA 189
Query 182 PRAAA 186
PRAAA
Sbjct 190 PRAAA 194
>gi|296141299|ref|YP_003648542.1| TetR family transcriptional regulator [Tsukamurella paurometabola
DSM 20162]
gi|296029433|gb|ADG80203.1| putative transcriptional regulator, TetR family [Tsukamurella
paurometabola DSM 20162]
Length=203
Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 84/176 (48%), Positives = 110/176 (63%), Gaps = 1/176 (0%)
Query 3 VTAAVTPKGERRRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLIA 62
VTAA TPKGERRR ALV+AA ELL EGGFE+VRHRAVA RA +PLA+TTYYF SL DL++
Sbjct 4 VTAATTPKGERRRAALVAAAGELLVEGGFESVRHRAVAHRAHIPLAATTYYFESLGDLLS 63
Query 63 RAVEHIGMIEVAQLRARVSALSRRRRGPETTAVVLVDLLVGEMSSPGLAEQLISRYERHI 122
AV + G ++A +RARV +SRRRRG A ++ + S L+SRYER +
Sbjct 64 NAVAYAGDHDIAAVRARVDGVSRRRRGDAALARLIATVFFA-CESEAERSALVSRYERLV 122
Query 123 ACTRLPDLRESMRRSLRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALVE 178
CTR P L + + AE E ++RSGR + L+ DG+ ++A +
Sbjct 123 VCTRDPHLAQMQAQVRGTLAELHVEVLDRSGRRTDRARIERLMAIEDGAALAAFTD 178
>gi|291008057|ref|ZP_06566030.1| TetR family transcriptional regulator [Saccharopolyspora erythraea
NRRL 2338]
Length=177
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/167 (50%), Positives = 104/167 (63%), Gaps = 1/167 (0%)
Query 21 AAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLIARAVEHIGMIEVAQLRARV 80
AAA+LL EGGF+A+RHRAVA RAGLPLASTTYYFSSLDDL++ AVE G E+A R +
Sbjct 3 AAAQLLAEGGFDAIRHRAVADRAGLPLASTTYYFSSLDDLVSAAVEFEGRQELAAARECL 62
Query 81 SALSRRRRGPETTAVVLVDLLVGEMSSPGLAEQLISRYERHIACTRLPDLRESMRRSLRQ 140
+ L R ET +++DLL+G S G E ++ RYER + R P L +R +
Sbjct 63 AGLGDERLPAETVIDLILDLLLGSRSRDGGVEPVLLRYERLVGTPRRPYLAPLIRELNAE 122
Query 141 RAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALVEGR-DPRAAA 186
E V E +ER G + E V VDG+VV+AL+E DPR AA
Sbjct 123 LQELVREILERGGAAGGPEQVRHHFALVDGAVVNALIESDPDPRGAA 169
>gi|343925801|ref|ZP_08765316.1| putative TetR family transcriptional regulator [Gordonia alkanivorans
NBRC 16433]
gi|343764152|dbj|GAA12242.1| putative TetR family transcriptional regulator [Gordonia alkanivorans
NBRC 16433]
Length=181
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/183 (43%), Positives = 109/183 (60%), Gaps = 5/183 (2%)
Query 18 LVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLIARAVEHIGMIEVAQLR 77
++ AA ELL EGGF+AVRHRAVA RA LPLASTTYYF+SLDDL+A A + + +
Sbjct 1 MIEAAGELLLEGGFDAVRHRAVAERAQLPLASTTYYFASLDDLMAEAAASLCSHDAEAVT 60
Query 78 ARVSALSRRRRGPETTAVVLVDLLVGEMSSPGLAEQLISRYERHIACTRLPDLRESMRRS 137
R +AL RRRRG T+ L +++VG+ + +QL +RYE R P LRE +
Sbjct 61 ERCNALPRRRRGKTATSTALAEVVVGDDT----IQQLSARYEMIALSARYPMLREVVSDR 116
Query 138 LRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALVE-GRDPRAAALATVVDLIDV 196
+ + + + +SGR A + LI DG++V AL + G P A ++++IDV
Sbjct 117 WQTLSMCHLDVLAKSGRVADPAHIAQLIGIEDGAIVGALGQNGVRPIDAVRDVLLEVIDV 176
Query 197 LAP 199
LAP
Sbjct 177 LAP 179
>gi|257057744|ref|YP_003135576.1| hypothetical protein Svir_38050 [Saccharomonospora viridis DSM
43017]
gi|256587616|gb|ACU98749.1| uncharacterized conserved protein [Saccharomonospora viridis
DSM 43017]
Length=214
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 98/186 (53%), Positives = 123/186 (67%), Gaps = 5/186 (2%)
Query 3 VTAAVTPKGERRRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLIA 62
+AA TPKGERRR ALV+AAAELL EGGF+AVRHRAVA RAGLPLASTTYYF SLD+L+
Sbjct 8 TSAASTPKGERRRAALVAAAAELLAEGGFDAVRHRAVAERAGLPLASTTYYFDSLDELLC 67
Query 63 RAVEHIGMIEVAQLRARVSALSRRRRGPETTAVVLVDLLVGEMSSPGLAEQLISRYERHI 122
A+EH G +E+A RAR+ L+ R + +++DLL+G P L E ++ RYER +
Sbjct 68 AAMEHRGRVELAAGRARLDELTTEDRNVDAVVELVLDLLLG--PDPRL-EAVVLRYERFV 124
Query 123 ACTRLPDLRESMRRSLRQRAEAVAEAIERSGR-SAQIELVCTLICAVDGSVVSALVE-GR 180
R P LR MR + E ++E ERSG E + LI VDG+VV+AL+E
Sbjct 125 GTARRPYLRPLMRTLAAELRELLSEIFERSGFGDVDAEWLERLITLVDGAVVNALIEVNP 184
Query 181 DPRAAA 186
DPRA A
Sbjct 185 DPRAVA 190
>gi|325001961|ref|ZP_08123073.1| TetR family transcriptional regulator [Pseudonocardia sp. P1]
Length=192
Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 81/188 (44%), Positives = 111/188 (60%), Gaps = 9/188 (4%)
Query 1 MGVTAAVTPKGERRRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDL 60
M T KGERRR LVSAA+ELL EGGF+A+RHRAVA RAG+PLA+TTYYFSSL+DL
Sbjct 1 MAAPGKQTEKGERRRAQLVSAASELLAEGGFDAIRHRAVAERAGVPLAATTYYFSSLEDL 60
Query 61 IARAVEHIGMIEVAQLRARVSALSRRRRGPETTAVVLVDLLVGEMSSPGLAEQLISRYER 120
+ A++ +G E+A R + + R P +++DLL+G S + ++ R+ER
Sbjct 61 VGAALDRLGREELADARGCLDS----RDDPNE---IVLDLLLGPRSRTEGLDAVLRRFER 113
Query 121 HIACTRLPDLRESMRRSLRQRAEAVAEAIER-SGRSAQIELVCTLICAVDGSVVSALVEG 179
I R P L +R + + EA+ R +GR + V + VDG VV+AL+E
Sbjct 114 LIGSGRRPFLAGLLREQRVEFDALLEEALTRVAGRRPRPGEVRRVTALVDGIVVTALIEA 173
Query 180 R-DPRAAA 186
DPR A
Sbjct 174 EPDPRGIA 181
>gi|333918345|ref|YP_004491926.1| putative TetR family transcriptional regulator [Amycolicicoccus
subflavus DQS3-9A1]
gi|333480566|gb|AEF39126.1| Putative transcriptional regulator, TetR family [Amycolicicoccus
subflavus DQS3-9A1]
Length=174
Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 74/173 (43%), Positives = 101/173 (59%), Gaps = 4/173 (2%)
Query 28 EGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLIARAVEHIGMIEVAQLRARVSALSRRR 87
EGG EAVRHR VA+RAGLPLASTTYYFSSLDDL+ A E + ++ V+ + +R
Sbjct 3 EGGLEAVRHRGVAQRAGLPLASTTYYFSSLDDLVVSAAEFEAADAMNRVDELVAGVPKRA 62
Query 88 RGPETTAVVLVDLLVGEMSSPGLAEQLISRYERHIACTRLPDLRESMRRSLRQRAEAVAE 147
R T +LVD+LVG ++ L SRYE+++A R P+LRE R A++E
Sbjct 63 RSIHTLVDLLVDVLVGRGVG---SDALASRYEQNLAIARHPELREIQVRMRAHTIAAISE 119
Query 148 AIERSGRSAQIELVCTLICAVDGSVVSALV-EGRDPRAAALATVVDLIDVLAP 199
+ RSGR + L V G+V+SA++ E D + + D+ID LAP
Sbjct 120 ILARSGRPVRESRARALEAMVAGAVLSAVLDEPPDLAGTVRSLLCDVIDQLAP 172
>gi|269218690|ref|ZP_06162544.1| transcriptional regulator, TetR family protein [Actinomyces sp.
oral taxon 848 str. F0332]
gi|269211801|gb|EEZ78141.1| transcriptional regulator, TetR family protein [Actinomyces sp.
oral taxon 848 str. F0332]
Length=200
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/183 (38%), Positives = 99/183 (55%), Gaps = 10/183 (5%)
Query 6 AVTPKGERRRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLIARAV 65
A T KGE RR +V AAA L+ EGG +V HRAVARRAG L++TTYYF L+DL+ +A
Sbjct 15 AATLKGEARRRQIVEAAAALVREGGPSSVSHRAVARRAGCSLSATTYYFEGLEDLLHQA- 73
Query 66 EHIGMIEVAQLRARVSALSRRRRGPETTAVVLVDLLVGEMSSPGLAEQ-LISRYERHIAC 124
G + ++ +R ++ R V + + + +S+ + Q LI Y + I+
Sbjct 74 ---GALNISLWASRAERVAERVESRAAEDVAMAERVEAILSATLPSGQALIGHYAQLISA 130
Query 125 TRLPDLRESMRRSLRQRAEAVAEAIERSGRSAQIELVCTLICA-VDGSVVSALVEGRDPR 183
+ S R+ R R A A+ R +I+L L+ A VDG+ VSAL EGRD +
Sbjct 131 GDFAPV-ASAYRTGRSRLNA---AVARVLAHLRIDLTADLVIAVVDGAAVSALSEGRDVK 186
Query 184 AAA 186
A A
Sbjct 187 ATA 189
>gi|296269737|ref|YP_003652369.1| TetR family transcriptional regulator [Thermobispora bispora
DSM 43833]
gi|296092524|gb|ADG88476.1| transcriptional regulator, TetR family [Thermobispora bispora
DSM 43833]
Length=221
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/167 (37%), Positives = 88/167 (53%), Gaps = 8/167 (4%)
Query 14 RRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLIARAVEHIGMIEV 73
RR L+ AA ELL EGGF AV HRAVARRAG+PLA+T+YYF+ L+A A + E+
Sbjct 42 RRERLLEAAVELLEEGGFTAVTHRAVARRAGVPLAATSYYFTCRAALLAEAFTLLVEREL 101
Query 74 AQLRARVSALSRRRRGPETTAVVLVDLLVGEMSSPGLAEQLISRYERHIACTRLPDLRES 133
A +RA + A+ P+ A LV +L + ++ + +E ++ R PDL+
Sbjct 102 AAIRAHLEAVP--ADPPDALAEALVQILNHDR------QRRLGLWELYLQAGRDPDLQRI 153
Query 134 MRRSLRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALVEGR 180
R E V+ + RSG A+ V + + G V +VE R
Sbjct 154 ARAWTDGCDEIVSWVLHRSGHHARPSQVRFVTTVLSGLWVEGIVEDR 200
>gi|300790972|ref|YP_003771263.1| TetR family transcriptional regulator [Amycolatopsis mediterranei
U32]
gi|299800486|gb|ADJ50861.1| TetR family transcriptional regulator [Amycolatopsis mediterranei
U32]
Length=187
Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 68/194 (36%), Positives = 93/194 (48%), Gaps = 31/194 (15%)
Query 10 KGERRRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLI-------A 62
+GE+RR L++A ++ G V HR VA AG+P STTY+FSSLDDL+ A
Sbjct 12 RGEKRRTELIAATLRIIERDGVAGVTHRTVAAEAGVPTTSTTYHFSSLDDLLIATLISCA 71
Query 63 R--AVEHIGMIEVAQLRARVSALSRRRRGPETTAVVLVDLLVGEMSSPGLAEQLISRYER 120
R A E MI+ RAR SR RG E AV+L + L G +AE YE
Sbjct 72 RDMATEVYWMID----RAR----SRGSRGAEEVAVLLAEAL-GPRRGRTMAE-----YEL 117
Query 121 HIACTRLPDLRESMRRSLRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALVEGR 180
++ R P+LR + RR L V E + R + +DG ++ L++
Sbjct 118 YLLAARKPELRPAARRWLDVLTSMVRHDDEVAFR--------VFLAGIDGLLIQGLIDDG 169
Query 181 DPRAAALATVVDLI 194
P A L VVD +
Sbjct 170 PPSAEELRPVVDYL 183
>gi|340532668|gb|AEK47873.1| TetR family transcriptional regulator [Amycolatopsis mediterranei
S699]
Length=187
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/194 (35%), Positives = 93/194 (48%), Gaps = 31/194 (15%)
Query 10 KGERRRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLI-------A 62
+GE+RR L++A ++ G V HR VA AG+P STTY+FSSLDDL+ A
Sbjct 12 RGEKRRTELIAATLRIIERDGVAGVTHRTVAAEAGVPTTSTTYHFSSLDDLLIATLISCA 71
Query 63 R--AVEHIGMIEVAQLRARVSALSRRRRGPETTAVVLVDLLVGEMSSPGLAEQLISRYER 120
R A E MI+ RAR SR RG E A++L + L G +AE YE
Sbjct 72 RDMATEVYWMID----RAR----SRGSRGAEEVAILLAEAL-GPRRGRTMAE-----YEL 117
Query 121 HIACTRLPDLRESMRRSLRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALVEGR 180
++ R P+LR + RR L V E + R + +DG ++ L++
Sbjct 118 YLLAARKPELRPAARRWLDVLTSMVRHDDEVAFR--------VFLAGIDGLLIQGLIDDG 169
Query 181 DPRAAALATVVDLI 194
P A L VVD +
Sbjct 170 PPSAEELRPVVDYL 183
>gi|297560633|ref|YP_003679607.1| TetR family transcriptional regulator [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
gi|296845081|gb|ADH67101.1| transcriptional regulator, TetR family [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
Length=184
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 60/188 (32%), Positives = 92/188 (49%), Gaps = 19/188 (10%)
Query 10 KGERRRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLIARAVEHIG 69
KGE+RR AL+ A ++ G V HR V++ AG+P ++TTYYF+ L DL+ A+ +
Sbjct 10 KGEQRRQALIEATLRVIERDGVAGVSHRTVSQEAGVPTSATTYYFTGLGDLLTAALTGV- 68
Query 70 MIEVAQLRARVSALSRRRRGPETTAVVLVDLLVGEMSSPGLAEQLISRYERHIACTRLPD 129
M E ++ R+S+ RRR L +LL S PG +L++ YE + R P
Sbjct 69 MDEDSERMRRMSSGGDRRRD-------LAELLSKVASDPG---RLLAEYELFLLAARQPH 118
Query 130 LRESMRRSLRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALVEGRDPRAAALAT 189
LRE+ R L A A R + V + +DG ++ L+ P A
Sbjct 119 LREATDRWL-----AAVSAFARCYTDDPVR-VRNVAAVIDGILLHTLLSDHKPDADEFEA 172
Query 190 VVDLIDVL 197
+++ DVL
Sbjct 173 LLE--DVL 178
>gi|257057801|ref|YP_003135633.1| hypothetical protein Svir_38620 [Saccharomonospora viridis DSM
43017]
gi|256587673|gb|ACU98806.1| uncharacterized conserved protein [Saccharomonospora viridis
DSM 43017]
Length=186
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 64/194 (33%), Positives = 92/194 (48%), Gaps = 31/194 (15%)
Query 10 KGERRRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLI-------A 62
+GE+RR ++ A ++ G V HR VA+ AG+P STTY+FSSLDDL+ A
Sbjct 11 RGEKRRQEIIEATLRVIERDGVAGVTHRTVAKEAGVPTTSTTYHFSSLDDLLIATLISCA 70
Query 63 R--AVEHIGMIEVAQLRARVSALSRRRRGPETTAVVLVDLLVGEMSSPGLAEQLISRYER 120
R A E MI+ RAR SR RG + A +L + +G +AE YE
Sbjct 71 RDMATEVYWMID----RAR----SRGSRGADEVANLLAE-AIGPRRGRTMAE-----YEL 116
Query 121 HIACTRLPDLRESMRRSLRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALVEGR 180
++ R P+LR + RR L V E + R + +DG ++ L++
Sbjct 117 YLLAARRPELRPAARRWLDVLTSMVRHDDEVAFR--------VFLAGIDGLLIQGLIDDE 168
Query 181 DPRAAALATVVDLI 194
P A L VVD +
Sbjct 169 PPTAEELRPVVDYL 182
>gi|302531180|ref|ZP_07283522.1| predicted protein [Streptomyces sp. AA4]
gi|302440075|gb|EFL11891.1| predicted protein [Streptomyces sp. AA4]
Length=186
Score = 71.2 bits (173), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 64/194 (33%), Positives = 89/194 (46%), Gaps = 31/194 (15%)
Query 10 KGERRRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLIA------- 62
+GE+RR ++ A ++ G V HR VA AG+P STTY+FSSLDDL+
Sbjct 11 RGEKRRTEIIEATLRVIERDGVAGVTHRTVAAEAGVPTTSTTYHFSSLDDLLVATLISCA 70
Query 63 --RAVEHIGMIEVAQLRARVSALSRRRRGPETTAVVLVDLLVGEMSSPGLAEQLISRYER 120
A E MI+ RAR SR RG E A +L + L G +AE YE
Sbjct 71 RDMATEVYWMID----RAR----SRGSRGAEEVAGLLAEAL-GPRRGRTMAE-----YEL 116
Query 121 HIACTRLPDLRESMRRSLRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALVEGR 180
++ R P+LR + RR L V E + R + +DG ++ L++
Sbjct 117 YLLAARKPELRPAARRWLDVLTSMVRHDDEVAFR--------VFLAGIDGLLIQGLIDDE 168
Query 181 DPRAAALATVVDLI 194
P A L VVD +
Sbjct 169 PPSAEELRPVVDYL 182
>gi|325068819|ref|ZP_08127492.1| transcriptional regulator, TetR family protein [Actinomyces oris
K20]
Length=220
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/198 (33%), Positives = 103/198 (53%), Gaps = 23/198 (11%)
Query 7 VTPKGERRRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLIARAVE 66
+TP+GE RR A++ AAA ++ E G A+ HR+VA+RAG L++TTYYF+ L+DL+ +A
Sbjct 1 MTPRGEDRRQAIIEAAAAIIRESGPSAISHRSVAKRAGCSLSATTYYFNGLEDLLHQA-- 58
Query 67 HIGMIEVAQLRARVSALSRRRRG-------PETTAVVLVDLLVGEMSSPGLAEQLISRYE 119
G++ + +R ++ R P+ +L L + G QLIS
Sbjct 59 --GLVNIGLWASRAEHVADRVEAFKGVPDVPQRVRFILQATLPAHGAYFGHYLQLIS--- 113
Query 120 RHIACTRLPDLRESMRRSLRQRAEAVAEAIERSGRSA-QIELVCTLICAVDGSVVSALVE 178
++ ++ + R+ RQR A + R S + E+V I VDG+ V+AL E
Sbjct 114 ----ASQASPVKHAYRQG-RQRLNAALRRVLRQFDSPLEPEMV---IAIVDGAAVTALSE 165
Query 179 GRDPRAAALATVVDLIDV 196
G + +A A + DLI +
Sbjct 166 GWNVKATAAGLLTDLISL 183
>gi|343521882|ref|ZP_08758848.1| transcriptional regulator, TetR family [Actinomyces sp. oral
taxon 175 str. F0384]
gi|343401291|gb|EGV13797.1| transcriptional regulator, TetR family [Actinomyces sp. oral
taxon 175 str. F0384]
Length=280
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/201 (32%), Positives = 98/201 (49%), Gaps = 29/201 (14%)
Query 7 VTPKGERRRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLIARAVE 66
VTP+GE RR ++ AAA ++ E G A+ HR+VA+RAG L++TTYYF L+DL+ +A
Sbjct 61 VTPRGEDRRQTIIEAAAAIIRESGPSAISHRSVAKRAGCSLSATTYYFDGLEDLLHQA-- 118
Query 67 HIGMIEVAQLRARVSALSRRRRG-------PETTAVVLVDLLVGEMSSPGLAEQLISRYE 119
G++ + +R ++ R P+ +L L G QLIS +
Sbjct 119 --GLVNIGLWASRAEHVADRVEAFKGVPDVPQRVRFILQATLPAHGGYFGHYLQLISASQ 176
Query 120 ----RHIACTRLPDLRESMRRSLRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSA 175
+H L ++RR LRQ + + E+V I VDG+ V+A
Sbjct 177 ASPVKHAYRQGRQRLNAALRRVLRQLDSPL-----------EPEMV---IAVVDGAAVTA 222
Query 176 LVEGRDPRAAALATVVDLIDV 196
L EG + ++ A + DLI +
Sbjct 223 LSEGWNVKSTAAGLLTDLISL 243
>gi|284034354|ref|YP_003384285.1| TetR family transcriptional regulator [Kribbella flavida DSM
17836]
gi|283813647|gb|ADB35486.1| transcriptional regulator, TetR family [Kribbella flavida DSM
17836]
Length=187
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 61/182 (34%), Positives = 93/182 (52%), Gaps = 14/182 (7%)
Query 10 KGERRRYALVSAAAELLGEGGFEAVRHRAVARRAGLPLASTTYYFSSLDDLIARAVEHIG 69
+G +RR L+ AA ++ G A+ HRAVA RAG+ LASTTY+F++LDDL+ A+
Sbjct 16 RGAQRRAELLRAALAVIERDGVAAISHRAVAARAGVSLASTTYHFATLDDLLVAALTGAA 75
Query 70 MIEVAQLRARVSALSRRRRGPETTAVVLVDLLVGEMSSPGLAEQLISRYERHIACTRLPD 129
A+L RV+ L R P LV+ L+ LAE YE ++ R P+
Sbjct 76 EDLTAELHERVTELGAR---PADELARLVEHLLVYRRGRTLAE-----YELYLLAARRPE 127
Query 130 LRESMRRSLRQRAEAVAEAIERSGRSAQIELVCTLICAVDGSVVSALVEGRDPRAAALAT 189
LRE+ L+ E +A + + A + L+ A+DG ++ +LV R A A
Sbjct 128 LREAAAAWLQPLTE-IARTFTTNPQKASL-----LVAALDGLLLQSLVGARSFDQADFAA 181
Query 190 VV 191
++
Sbjct 182 LL 183
Lambda K H
0.322 0.134 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 236380426956
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40