BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0776c

Length=259
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15607916|ref|NP_215290.1|  hypothetical protein Rv0776c [Mycob...   510    7e-143
gi|289446341|ref|ZP_06436085.1|  conserved hypothetical protein [...   508    3e-142
gi|294996253|ref|ZP_06801944.1|  hypothetical protein Mtub2_17541...   498    3e-139
gi|340625795|ref|YP_004744247.1|  hypothetical protein MCAN_07801...   485    3e-135
gi|339293797|gb|AEJ45908.1|  hypothetical protein CCDC5079_0718 [...   454    6e-126
gi|296166476|ref|ZP_06848908.1|  conserved hypothetical protein [...   380    1e-103
gi|183984885|ref|YP_001853176.1|  hypothetical protein MMAR_4917 ...   370    1e-100
gi|289749286|ref|ZP_06508664.1|  conserved hypothetical protein [...   367    6e-100
gi|118616330|ref|YP_904662.1|  hypothetical protein MUL_0489 [Myc...   363    1e-98 
gi|240172808|ref|ZP_04751467.1|  hypothetical protein MkanA1_2608...   357    8e-97 
gi|254818445|ref|ZP_05223446.1|  hypothetical protein MintA_00892...   338    7e-91 
gi|342862180|ref|ZP_08718822.1|  hypothetical protein MCOL_24941 ...   316    2e-84 
gi|118462412|ref|YP_879996.1|  hypothetical protein MAV_0720 [Myc...   315    3e-84 
gi|41406708|ref|NP_959544.1|  hypothetical protein MAP0610c [Myco...   312    3e-83 
gi|118471774|ref|YP_890075.1|  hypothetical protein MSMEG_5849 [M...   308    4e-82 
gi|311743304|ref|ZP_07717111.1|  RelA/SpoT domain protein [Aeromi...   288    5e-76 
gi|326333189|ref|ZP_08199436.1|  RelA/SpoT-like protein [Nocardio...   278    7e-73 
gi|120406094|ref|YP_955923.1|  RelA/SpoT domain-containing protei...   274    1e-71 
gi|145222204|ref|YP_001132882.1|  RelA/SpoT domain-containing pro...   272    3e-71 
gi|315442643|ref|YP_004075522.1|  hypothetical protein Mspyr1_099...   271    7e-71 
gi|119718837|ref|YP_925802.1|  RelA/SpoT domain-containing protei...   271    9e-71 
gi|289749292|ref|ZP_06508670.1|  conserved hypothetical protein [...   268    6e-70 
gi|108801530|ref|YP_641727.1|  hypothetical protein Mmcs_4567 [My...   266    2e-69 
gi|254231091|ref|ZP_04924418.1|  conserved hypothetical protein [...   266    3e-69 
gi|126437515|ref|YP_001073206.1|  hypothetical protein Mjls_4950 ...   266    3e-69 
gi|336119192|ref|YP_004573968.1|  hypothetical protein MLP_35510 ...   265    6e-69 
gi|284032478|ref|YP_003382409.1|  hypothetical protein Kfla_4592 ...   219    3e-55 
gi|320333670|ref|YP_004170381.1|  hypothetical protein Deima_1063...   139    6e-31 
gi|86609079|ref|YP_477841.1|  hypothetical protein CYB_1617 [Syne...   129    6e-28 
gi|219849017|ref|YP_002463450.1|  hypothetical protein Cagg_2130 ...   126    4e-27 
gi|86606078|ref|YP_474841.1|  hypothetical protein CYA_1408 [Syne...   121    1e-25 
gi|163846988|ref|YP_001635032.1|  hypothetical protein Caur_1415 ...   114    2e-23 
gi|307153587|ref|YP_003888971.1|  hypothetical protein Cyan7822_3...   114    2e-23 
gi|218437319|ref|YP_002375648.1|  hypothetical protein PCC7424_03...   108    7e-22 
gi|186685205|ref|YP_001868401.1|  hypothetical protein Npun_R5126...   103    3e-20 
gi|170078853|ref|YP_001735491.1|  hypothetical protein SYNPCC7002...   103    3e-20 
gi|254416587|ref|ZP_05030338.1|  hypothetical protein MC7420_5191...   100    2e-19 
gi|119512218|ref|ZP_01631307.1|  hypothetical protein N9414_08944...   100    3e-19 
gi|16329344|ref|NP_440072.1|  hypothetical protein slr1094 [Synec...  99.8    4e-19 
gi|75909204|ref|YP_323500.1|  hypothetical protein Ava_2995 [Anab...  97.1    2e-18 
gi|113475388|ref|YP_721449.1|  hypothetical protein Tery_1712 [Tr...  95.9    5e-18 
gi|17228766|ref|NP_485314.1|  hypothetical protein alr1271 [Nosto...  95.1    8e-18 
gi|261855902|ref|YP_003263185.1|  hypothetical protein Hneap_1303...  92.0    7e-17 
gi|329895032|ref|ZP_08270797.1|  hypothetical protein IMCC3088_12...  91.3    1e-16 
gi|22299687|ref|NP_682934.1|  hypothetical protein tlr2144 [Therm...  79.3    5e-13 
gi|345010362|ref|YP_004812716.1|  hypothetical protein Strvi_2726...  77.4    2e-12 
gi|344327288|gb|EGW38725.1|  phosphoribosyl-ATP pyrophosphohydrol...  76.6    3e-12 
gi|126668601|ref|ZP_01739554.1|  hypothetical protein MELB17_1557...  73.2    4e-11 
gi|344330468|gb|EGW41762.1|  phosphoribosyl-ATP pyrophosphohydrol...  71.6    1e-10 
gi|269925371|ref|YP_003321994.1|  hypothetical protein Tter_0250 ...  70.5    2e-10 


>gi|15607916|ref|NP_215290.1| hypothetical protein Rv0776c [Mycobacterium tuberculosis H37Rv]
 gi|15840191|ref|NP_335228.1| hypothetical protein MT0800 [Mycobacterium tuberculosis CDC1551]
 gi|31791964|ref|NP_854457.1| hypothetical protein Mb0799c [Mycobacterium bovis AF2122/97]
 68 more sequence titles
 Length=259

 Score =  510 bits (1314),  Expect = 7e-143, Method: Compositional matrix adjust.
 Identities = 259/259 (100%), Positives = 259/259 (100%), Gaps = 0/259 (0%)

Query  1    MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV  60
            MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV
Sbjct  1    MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV  60

Query  61   VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR  120
            VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR
Sbjct  61   VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR  120

Query  121  RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ  180
            RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ
Sbjct  121  RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ  180

Query  181  PDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS  240
            PDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS
Sbjct  181  PDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS  240

Query  241  LPTDFRTAPDAGRRARARR  259
            LPTDFRTAPDAGRRARARR
Sbjct  241  LPTDFRTAPDAGRRARARR  259


>gi|289446341|ref|ZP_06436085.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289419299|gb|EFD16500.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
Length=259

 Score =  508 bits (1308),  Expect = 3e-142, Method: Compositional matrix adjust.
 Identities = 258/259 (99%), Positives = 258/259 (99%), Gaps = 0/259 (0%)

Query  1    MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV  60
            MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV
Sbjct  1    MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV  60

Query  61   VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR  120
            VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR
Sbjct  61   VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR  120

Query  121  RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ  180
            RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ
Sbjct  121  RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ  180

Query  181  PDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS  240
            PDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS
Sbjct  181  PDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS  240

Query  241  LPTDFRTAPDAGRRARARR  259
            LP DFRTAPDAGRRARARR
Sbjct  241  LPIDFRTAPDAGRRARARR  259


>gi|294996253|ref|ZP_06801944.1| hypothetical protein Mtub2_17541 [Mycobacterium tuberculosis 
210]
 gi|313657594|ref|ZP_07814474.1| hypothetical protein MtubKV_04196 [Mycobacterium tuberculosis 
KZN V2475]
 gi|339297437|gb|AEJ49547.1| hypothetical protein CCDC5180_0710 [Mycobacterium tuberculosis 
CCDC5180]
Length=254

 Score =  498 bits (1283),  Expect = 3e-139, Method: Compositional matrix adjust.
 Identities = 253/254 (99%), Positives = 254/254 (100%), Gaps = 0/254 (0%)

Query  6    VDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLVVANRT  65
            +DLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLVVANRT
Sbjct  1    MDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLVVANRT  60

Query  66   GQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATRRAIEV  125
            GQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATRRAIEV
Sbjct  61   GQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATRRAIEV  120

Query  126  YPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQPDWVS  185
            YPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQPDWVS
Sbjct  121  YPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQPDWVS  180

Query  186  LRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPSLPTDF  245
            LRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPSLPTDF
Sbjct  181  LRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPSLPTDF  240

Query  246  RTAPDAGRRARARR  259
            RTAPDAGRRARARR
Sbjct  241  RTAPDAGRRARARR  254


>gi|340625795|ref|YP_004744247.1| hypothetical protein MCAN_07801 [Mycobacterium canettii CIPT 
140010059]
 gi|340003985|emb|CCC43120.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=259

 Score =  485 bits (1248),  Expect = 3e-135, Method: Compositional matrix adjust.
 Identities = 244/250 (98%), Positives = 247/250 (99%), Gaps = 0/250 (0%)

Query  1    MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV  60
            MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV
Sbjct  1    MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV  60

Query  61   VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR  120
            V NRTGQRPAEAALNRDFR+FEAGAYPANTEKPEFAD PRAARLARQLALDMDPLSSATR
Sbjct  61   VTNRTGQRPAEAALNRDFRRFEAGAYPANTEKPEFADGPRAARLARQLALDMDPLSSATR  120

Query  121  RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ  180
            RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ
Sbjct  121  RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ  180

Query  181  PDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS  240
            PDWVSLRRQVTVAQRKSDLRAAEDP+DAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS
Sbjct  181  PDWVSLRRQVTVAQRKSDLRAAEDPVDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS  240

Query  241  LPTDFRTAPD  250
            LP DFR+APD
Sbjct  241  LPADFRSAPD  250


>gi|339293797|gb|AEJ45908.1| hypothetical protein CCDC5079_0718 [Mycobacterium tuberculosis 
CCDC5079]
Length=232

 Score =  454 bits (1168),  Expect = 6e-126, Method: Compositional matrix adjust.
 Identities = 231/232 (99%), Positives = 232/232 (100%), Gaps = 0/232 (0%)

Query  28   VGVGAARDDASVLAALRPYVVGDCLVAFDAPLVVANRTGQRPAEAALNRDFRQFEAGAYP  87
            +GVGAARDDASVLAALRPYVVGDCLVAFDAPLVVANRTGQRPAEAALNRDFRQFEAGAYP
Sbjct  1    MGVGAARDDASVLAALRPYVVGDCLVAFDAPLVVANRTGQRPAEAALNRDFRQFEAGAYP  60

Query  88   ANTEKPEFADVPRAARLARQLALDMDPLSSATRRAIEVYPHPATVALFRLPRALKYKAKP  147
            ANTEKPEFADVPRAARLARQLALDMDPLSSATRRAIEVYPHPATVALFRLPRALKYKAKP
Sbjct  61   ANTEKPEFADVPRAARLARQLALDMDPLSSATRRAIEVYPHPATVALFRLPRALKYKAKP  120

Query  148  GRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQPDWVSLRRQVTVAQRKSDLRAAEDPID  207
            GRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQPDWVSLRRQVTVAQRKSDLRAAEDPID
Sbjct  121  GRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQPDWVSLRRQVTVAQRKSDLRAAEDPID  180

Query  208  AVVCAYVALYAQRRPADVTIYGDFTTGYIVTPSLPTDFRTAPDAGRRARARR  259
            AVVCAYVALYAQRRPADVTIYGDFTTGYIVTPSLPTDFRTAPDAGRRARARR
Sbjct  181  AVVCAYVALYAQRRPADVTIYGDFTTGYIVTPSLPTDFRTAPDAGRRARARR  232


>gi|296166476|ref|ZP_06848908.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295898237|gb|EFG77811.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=248

 Score =  380 bits (975),  Expect = 1e-103, Method: Compositional matrix adjust.
 Identities = 192/244 (79%), Positives = 207/244 (85%), Gaps = 0/244 (0%)

Query  1    MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV  60
            MYF GVDLAWAGRNPTG+AAVD  G LV VGAA DDA+VLAAL PYV GDCLVAFDAPLV
Sbjct  1    MYFAGVDLAWAGRNPTGIAAVDGGGRLVHVGAAGDDAAVLAALSPYVRGDCLVAFDAPLV  60

Query  61   VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR  120
            V N TGQRPAEAALNRDFR+FEAGA+PANT KPEFA  PRAARLAR + LDMDP S A+R
Sbjct  61   VTNPTGQRPAEAALNRDFRRFEAGAHPANTTKPEFAQGPRAARLARTMGLDMDPRSPASR  120

Query  121  RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ  180
            RAIEVYPHPATV LFRL R LKYKAKPGR V+ LKSELL LMDG+E LA A V + VAG 
Sbjct  121  RAIEVYPHPATVVLFRLARTLKYKAKPGRGVEQLKSELLVLMDGIEKLADAAVPLHVAGH  180

Query  181  PDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS  240
             DWV LR +V+ AQRKS+LR+ EDP+DAVVCAYVALYAQRRP DVTIYGDF TGYIVTPS
Sbjct  181  EDWVRLRMRVSRAQRKSELRSVEDPVDAVVCAYVALYAQRRPTDVTIYGDFATGYIVTPS  240

Query  241  LPTD  244
            LP +
Sbjct  241  LPAE  244


>gi|183984885|ref|YP_001853176.1| hypothetical protein MMAR_4917 [Mycobacterium marinum M]
 gi|183178211|gb|ACC43321.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=253

 Score =  370 bits (949),  Expect = 1e-100, Method: Compositional matrix adjust.
 Identities = 188/253 (75%), Positives = 209/253 (83%), Gaps = 0/253 (0%)

Query  1    MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV  60
            MYF GVDLAWAGRNPTGVA +D+DG LV  GA R+DA+VLAAL PY+ G C VAFDAPLV
Sbjct  1    MYFAGVDLAWAGRNPTGVAVLDSDGHLVCAGAVREDAAVLAALGPYLRGACRVAFDAPLV  60

Query  61   VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR  120
            VAN TGQRPAE ALNRDFR+FEAGA+PANT KPEFA  PRAARLA  L+LD+DP S A+R
Sbjct  61   VANATGQRPAETALNRDFRKFEAGAHPANTGKPEFARGPRAARLADSLSLDIDPFSPASR  120

Query  121  RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ  180
            RAIEVYPH ATVALFRLPR LKYKAKPGRSVD L+SELLRLMD VE L  A V +QV G 
Sbjct  121  RAIEVYPHAATVALFRLPRTLKYKAKPGRSVDRLRSELLRLMDEVEALRTAPVPLQVTGN  180

Query  181  PDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS  240
             DW+SLRRQV  AQRK +LR AEDP+DAVVCAYVALYA+R PAD+T+YGD T+GYI+TP+
Sbjct  181  QDWLSLRRQVVTAQRKCELRRAEDPVDAVVCAYVALYAERCPADITVYGDLTSGYILTPT  240

Query  241  LPTDFRTAPDAGR  253
            LP     AP A R
Sbjct  241  LPAGLTPAPTARR  253


>gi|289749286|ref|ZP_06508664.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289689873|gb|EFD57302.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length=209

 Score =  367 bits (943),  Expect = 6e-100, Method: Compositional matrix adjust.
 Identities = 191/207 (93%), Positives = 194/207 (94%), Gaps = 2/207 (0%)

Query  1    MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV  60
            MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV
Sbjct  1    MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV  60

Query  61   VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR  120
            VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR
Sbjct  61   VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR  120

Query  121  RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ  180
            RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ
Sbjct  121  RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ  180

Query  181  PDWVSLRRQVTVAQRKSDLRAAEDPID  207
            PDWVS       A + +  R  EDPI+
Sbjct  181  PDWVSCAAGDGRAAKTTVGR--EDPIE  205


>gi|118616330|ref|YP_904662.1| hypothetical protein MUL_0489 [Mycobacterium ulcerans Agy99]
 gi|118568440|gb|ABL03191.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=253

 Score =  363 bits (933),  Expect = 1e-98, Method: Compositional matrix adjust.
 Identities = 185/253 (74%), Positives = 207/253 (82%), Gaps = 0/253 (0%)

Query  1    MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV  60
            MYF GVDLAWAGRNPTGVA +D+D  LV  GA R+DA+VLAAL PY+ G C VAFDAPLV
Sbjct  1    MYFAGVDLAWAGRNPTGVAVLDSDRHLVCAGAVREDATVLAALGPYLRGACRVAFDAPLV  60

Query  61   VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR  120
            VAN TGQRPA+ ALNRDFR+FEAGA+P NT KPEFA  PRAARLA  L+LD+DP S A+R
Sbjct  61   VANATGQRPADTALNRDFRKFEAGAHPVNTGKPEFARGPRAARLADSLSLDIDPFSPASR  120

Query  121  RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ  180
            RAIEVYPH ATVALFRLPR LKYKAKPGRSVD L+SELLRLMD VE L  A V +QV G 
Sbjct  121  RAIEVYPHAATVALFRLPRTLKYKAKPGRSVDRLRSELLRLMDEVEALRTAPVPLQVTGN  180

Query  181  PDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS  240
             DW+SLRRQV  AQRK +LR AEDP+DAVVCAYVALYA+R PAD+T+YGD T+GYI+TP+
Sbjct  181  QDWLSLRRQVVTAQRKCELRRAEDPVDAVVCAYVALYAERCPADITVYGDLTSGYILTPT  240

Query  241  LPTDFRTAPDAGR  253
            LP     AP A R
Sbjct  241  LPAGLTPAPTARR  253


>gi|240172808|ref|ZP_04751467.1| hypothetical protein MkanA1_26082 [Mycobacterium kansasii ATCC 
12478]
Length=314

 Score =  357 bits (917),  Expect = 8e-97, Method: Compositional matrix adjust.
 Identities = 178/242 (74%), Positives = 196/242 (81%), Gaps = 0/242 (0%)

Query  1    MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV  60
            MYF GVDLAWAGRNPTGVA +D DG LV V A RDDA VLAALRPY  G C VAFDAPLV
Sbjct  1    MYFAGVDLAWAGRNPTGVAVIDDDGVLVRVRAVRDDAEVLAALRPYTAGPCRVAFDAPLV  60

Query  61   VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR  120
            V N +GQRPAE ALNRDFR FEAGAYP N  +PEFAD PRAARL+  L LDMDP S+  R
Sbjct  61   VTNPSGQRPAETALNRDFRAFEAGAYPTNAGRPEFADGPRAARLSGALGLDMDPFSAGPR  120

Query  121  RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ  180
            RAIEVYPH ATVALFRL R LKYKAKPGRS + LKSELLRLMDG+EGL +    ++V G 
Sbjct  121  RAIEVYPHAATVALFRLSRTLKYKAKPGRSAEQLKSELLRLMDGIEGLEKTSPPLRVTGH  180

Query  181  PDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS  240
             DW+SLRRQV  A RK +LR AEDPIDAVVCAYVA YA+RRP+D+T+YGDF TGY+VTP+
Sbjct  181  ADWLSLRRQVQAAVRKCELRRAEDPIDAVVCAYVARYAERRPSDITVYGDFATGYVVTPT  240

Query  241  LP  242
            LP
Sbjct  241  LP  242


>gi|254818445|ref|ZP_05223446.1| hypothetical protein MintA_00892 [Mycobacterium intracellulare 
ATCC 13950]
Length=251

 Score =  338 bits (866),  Expect = 7e-91, Method: Compositional matrix adjust.
 Identities = 179/248 (73%), Positives = 196/248 (80%), Gaps = 0/248 (0%)

Query  1    MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV  60
            MYF GVDLAWAGRNPTGVA VD+DG LV VGAARDD  +LAALRPYV GDC+VAFDAPLV
Sbjct  3    MYFAGVDLAWAGRNPTGVAVVDSDGDLVSVGAARDDDEILAALRPYVWGDCVVAFDAPLV  62

Query  61   VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR  120
            V N TGQRPAE ALNRDFR+FEAG +P NT KPEFA+ PR  RLA  L LD+DP S   R
Sbjct  63   VNNPTGQRPAETALNRDFRRFEAGTHPCNTGKPEFANGPRGGRLAAALGLDLDPRSPVGR  122

Query  121  RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ  180
            RA+EVYPH ATVALF L R LKYKAKPGRSVD LKSELL LMDG+E LAQA + ++VA  
Sbjct  123  RAVEVYPHAATVALFGLERTLKYKAKPGRSVDRLKSELLVLMDGLERLAQAPIPLRVAAH  182

Query  181  PDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS  240
              WV+LR  V  A RK +LR AEDP+DAVVCAYVALYAQRRPA +TIYGD  +G IVTPS
Sbjct  183  EGWVALRAAVAAAHRKCELRRAEDPVDAVVCAYVALYAQRRPAGMTIYGDVDSGCIVTPS  242

Query  241  LPTDFRTA  248
            LP    T 
Sbjct  243  LPGQICTG  250


>gi|342862180|ref|ZP_08718822.1| hypothetical protein MCOL_24941 [Mycobacterium colombiense CECT 
3035]
 gi|342130258|gb|EGT83578.1| hypothetical protein MCOL_24941 [Mycobacterium colombiense CECT 
3035]
Length=260

 Score =  316 bits (810),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 179/244 (74%), Positives = 191/244 (79%), Gaps = 0/244 (0%)

Query  1    MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV  60
            MYF GVDLAWAGRNPTGVA VDA G L    A RDD  +LAAL PYV GDCLVAFDAPLV
Sbjct  3    MYFAGVDLAWAGRNPTGVAVVDAGGALASACAVRDDDEILAALHPYVSGDCLVAFDAPLV  62

Query  61   VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR  120
            V N TGQRPAE ALNRDFR++EAG +P NT KPEFA  PRA RLA  L L +DP S + R
Sbjct  63   VTNPTGQRPAETALNRDFRRYEAGTHPCNTGKPEFAAGPRAGRLAAALGLALDPRSPSAR  122

Query  121  RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ  180
            RAIEVYPH ATVALFRL R LKYKAKPGR+VD LKSEL  LMDGVE LA+A V + VAG 
Sbjct  123  RAIEVYPHAATVALFRLERTLKYKAKPGRTVDGLKSELSLLMDGVERLARAPVPLHVAGH  182

Query  181  PDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS  240
              WV+LRR V  AQRKS+LR AEDP+DAVVCAYVALYAQR PA VTIYGD  TG IVTPS
Sbjct  183  AGWVALRRAVAAAQRKSELRRAEDPVDAVVCAYVALYAQRSPAAVTIYGDLDTGCIVTPS  242

Query  241  LPTD  244
             P D
Sbjct  243  PPVD  246


>gi|118462412|ref|YP_879996.1| hypothetical protein MAV_0720 [Mycobacterium avium 104]
 gi|254773659|ref|ZP_05215175.1| hypothetical protein MaviaA2_03152 [Mycobacterium avium subsp. 
avium ATCC 25291]
 gi|118163699|gb|ABK64596.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=263

 Score =  315 bits (808),  Expect = 3e-84, Method: Compositional matrix adjust.
 Identities = 180/263 (69%), Positives = 198/263 (76%), Gaps = 4/263 (1%)

Query  1    MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV  60
            MYF GVDLAWAGRNPTGVA +D+ G LV V A RDD  +LAAL PYV G+CLVAFDAPLV
Sbjct  1    MYFAGVDLAWAGRNPTGVAVIDSGGELVSVAAVRDDDEILAALDPYVRGECLVAFDAPLV  60

Query  61   VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR  120
            V N TGQRPAE ALNRDFR+F+AG +P NT KPEFAD PRAARLA  L L +DP S   R
Sbjct  61   VNNPTGQRPAETALNRDFRRFQAGTHPCNTGKPEFADGPRAARLAAALGLALDPRSPRPR  120

Query  121  RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ  180
            RAIEVYPH ATVALF L + LKYKAKPGRS++ LKSELL LM GVE LA A V ++V G 
Sbjct  121  RAIEVYPHAATVALFGLQQTLKYKAKPGRSLERLKSELLLLMAGVERLAHAPVPVRVGGH  180

Query  181  PDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS  240
              W +LRR V  AQRKS+LR AEDP+DAVVCAYVAL+AQRRP  VT YGD  TG IVTPS
Sbjct  181  AGWRALRRAVECAQRKSELRRAEDPVDAVVCAYVALFAQRRPDAVTSYGDPGTGCIVTPS  240

Query  241  LPT----DFRTAPDAGRRARARR  259
            LP       R+AP A R   A R
Sbjct  241  LPAARRQSLRSAPAADRSGPAPR  263


>gi|41406708|ref|NP_959544.1| hypothetical protein MAP0610c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41395058|gb|AAS02927.1| hypothetical protein MAP_0610c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|336458297|gb|EGO37276.1| hypothetical protein MAPs_13980 [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=263

 Score =  312 bits (799),  Expect = 3e-83, Method: Compositional matrix adjust.
 Identities = 179/263 (69%), Positives = 197/263 (75%), Gaps = 4/263 (1%)

Query  1    MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV  60
            MYF GVDLAWAGRNPTGVA +D+ G LV VGA  DD  +LAAL PYV G+CLVAFDAPLV
Sbjct  1    MYFAGVDLAWAGRNPTGVAVIDSAGELVSVGAVHDDDEILAALDPYVRGECLVAFDAPLV  60

Query  61   VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR  120
            V N TGQRPAE ALNRDFR+F+AG +P NT KPEFAD PRAARLA  L L +DP S   R
Sbjct  61   VNNPTGQRPAETALNRDFRRFQAGTHPCNTGKPEFADGPRAARLAAALGLALDPRSPRPR  120

Query  121  RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ  180
            RAIEVYPH ATVALF L + LKYKAKPGRS++ LKSELL LM GVE LA A V ++V   
Sbjct  121  RAIEVYPHAATVALFGLQQTLKYKAKPGRSLERLKSELLLLMAGVERLAHAPVPVRVGRH  180

Query  181  PDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS  240
              W +LRR V  AQRKS+LR AEDP+DAVVCAYVAL+AQRRP  VT YGD  TG IVTPS
Sbjct  181  AGWRALRRAVECAQRKSELRRAEDPVDAVVCAYVALFAQRRPDAVTSYGDPGTGCIVTPS  240

Query  241  LPT----DFRTAPDAGRRARARR  259
            LP       R+AP A R   A R
Sbjct  241  LPAARRQSLRSAPAADRSGPAPR  263


>gi|118471774|ref|YP_890075.1| hypothetical protein MSMEG_5849 [Mycobacterium smegmatis str. 
MC2 155]
 gi|118173061|gb|ABK73957.1| conserved hypothetical protein [Mycobacterium smegmatis str. 
MC2 155]
Length=567

 Score =  308 bits (790),  Expect = 4e-82, Method: Compositional matrix adjust.
 Identities = 154/244 (64%), Positives = 180/244 (74%), Gaps = 0/244 (0%)

Query  2    YFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLVV  61
            YFVG+DLAW  R PTGVA VD DG LV + AA DD S++AAL P+   +C+   DAPL+V
Sbjct  6    YFVGIDLAWGERKPTGVAVVDTDGRLVHLSAATDDDSIIAALAPFTGAECVAGIDAPLIV  65

Query  62   ANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATRR  121
             N TG RPAEAALNRDFR FEAGA+P+NT KPEFA  PR ARLA  L LD+DP S   RR
Sbjct  66   TNPTGNRPAEAALNRDFRPFEAGAHPSNTGKPEFAGTPRGARLAEALDLDLDPRSERPRR  125

Query  122  AIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQP  181
            A+EVYPH A+VALFRL R LKYKAKPGRS + L+SELLRLM+ + GL  A V + V+   
Sbjct  126  ALEVYPHAASVALFRLGRTLKYKAKPGRSFEQLRSELLRLMELIAGLRHADVPLDVSASE  185

Query  182  DWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPSL  241
             W  L   V  A  KS+LR AEDP+DAV+CAY+ALYA RRP D+TIYGD  TGYI+TP+L
Sbjct  186  QWRQLYSAVEGASTKSELRRAEDPVDAVLCAYIALYAARRPDDITIYGDTETGYILTPTL  245

Query  242  PTDF  245
            P D 
Sbjct  246  PQDL  249


>gi|311743304|ref|ZP_07717111.1| RelA/SpoT domain protein [Aeromicrobium marinum DSM 15272]
 gi|311313372|gb|EFQ83282.1| RelA/SpoT domain protein [Aeromicrobium marinum DSM 15272]
Length=571

 Score =  288 bits (738),  Expect = 5e-76, Method: Compositional matrix adjust.
 Identities = 148/251 (59%), Positives = 180/251 (72%), Gaps = 1/251 (0%)

Query  1    MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV  60
            M+ VG+DLAW  + PTGVA +D  G LV + + R DA +L A+RP+V GDCLVA DAPL+
Sbjct  1    MHLVGIDLAWGEKKPTGVAVLDPAGRLVHLSSQRRDADILEAVRPWVEGDCLVAVDAPLI  60

Query  61   VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR  120
            V N TG RPAE  LN DF +F+AGA+P N  KPEFAD PR ARLA  L LD+ P S++ R
Sbjct  61   VTNDTGNRPAERGLNADFARFDAGAHPVNRGKPEFADTPRGARLAEALGLDIHPASTSRR  120

Query  121  RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ  180
            RAIEVYPHPATVALFRL R L YK KPGR++D ++++LLRL   ++GLA A   + +   
Sbjct  121  RAIEVYPHPATVALFRLGRILAYKNKPGRTLDGMRAQLLRLTQLLDGLADARPALHL-DH  179

Query  181  PDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS  240
            PDW +L   VT A RKS+LR AED +DAVVCAYVA+ A + P  VT YGD  TGYIVTP+
Sbjct  180  PDWHALVEAVTSAGRKSELRTAEDQVDAVVCAYVAMVAAQDPGAVTTYGDADTGYIVTPT  239

Query  241  LPTDFRTAPDA  251
            LP D   AP A
Sbjct  240  LPADHTPAPRA  250


>gi|326333189|ref|ZP_08199436.1| RelA/SpoT-like protein [Nocardioidaceae bacterium Broad-1]
 gi|325948833|gb|EGD40926.1| RelA/SpoT-like protein [Nocardioidaceae bacterium Broad-1]
Length=585

 Score =  278 bits (710),  Expect = 7e-73, Method: Compositional matrix adjust.
 Identities = 146/249 (59%), Positives = 178/249 (72%), Gaps = 1/249 (0%)

Query  1    MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV  60
            M+F+GVDLAW  R PTG+A +D +G LV V AA+ D  ++AAL PYV  DCLVA DAPL+
Sbjct  1    MHFIGVDLAWGVRRPTGLAVLDEEGRLVHVSAAKTDDEIVAALEPYVDSDCLVAIDAPLI  60

Query  61   VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR  120
            V N TG RPAEAALN+DF +F+AGA+P NT KPEF + PR AR+A +L LDM+P S   R
Sbjct  61   VTNATGNRPAEAALNKDFARFDAGAHPTNTSKPEFGEQPRGARIAARLGLDMNPRSGRRR  120

Query  121  RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ  180
            RAIEVYPHPATVALFRL R LKYK K GR +D L++ELL L+ G+    Q+     +   
Sbjct  121  RAIEVYPHPATVALFRLGRTLKYKHKSGREIDQLRAELLVLL-GLLEGLQSSEPPLLLDD  179

Query  181  PDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS  240
            P W++LR     A RKS+LRA ED +DAV+CAY+ L+A R P   T YGDF TGYIVTP+
Sbjct  180  PAWLALRTAAENAVRKSELRAVEDQVDAVLCAYIGLFATRAPDRTTTYGDFATGYIVTPT  239

Query  241  LPTDFRTAP  249
            LP D R  P
Sbjct  240  LPDDLRPTP  248


>gi|120406094|ref|YP_955923.1| RelA/SpoT domain-containing protein [Mycobacterium vanbaalenii 
PYR-1]
 gi|119958912|gb|ABM15917.1| RelA/SpoT domain protein [Mycobacterium vanbaalenii PYR-1]
Length=574

 Score =  274 bits (700),  Expect = 1e-71, Method: Compositional matrix adjust.
 Identities = 149/260 (58%), Positives = 180/260 (70%), Gaps = 14/260 (5%)

Query  1    MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV  60
            MYFVG+DLAW  +N +G+A +DADG L+ VG A DD S+ AAL P+V  +CLVA DAPL+
Sbjct  1    MYFVGLDLAWGEKNQSGLAVIDADGRLLQVGTAHDDDSIEAALAPFVADECLVAIDAPLI  60

Query  61   VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR  120
            V N TG RPAE+  N+DF++FEAGA PA T++PEF   PRAAR+A +L LD DP SS+ R
Sbjct  61   VKNPTGHRPAESQFNKDFQRFEAGARPAFTDRPEFKH-PRAARIAERLGLDTDPSSSSPR  119

Query  121  RAIEVYPHPATVALFRLPRALKYKAKPGRSV-DLLKSELLRLMDGVEGLAQAGVRMQVAG  179
            RAIEVYPHPATV LF L + LKYK    R V +  + ELLRLM  +EGL  A  R++V  
Sbjct  120  RAIEVYPHPATVVLFDLEKTLKYK----RGVFEDRQRELLRLMTLIEGLDDATPRLRVNR  175

Query  180  QPDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTP  239
               WV LR++V  A + S L   EDP+DAV+CAYV LY   RP DVTIYGD  +GYIVTP
Sbjct  176  SAAWVELRKRVEAATKPSHLDRDEDPVDAVLCAYVGLYWYHRPEDVTIYGDAASGYIVTP  235

Query  240  SLPTDFRTAPDAGRRARARR  259
            SLP         GRR RA R
Sbjct  236  SLPE--------GRRPRAAR  247


>gi|145222204|ref|YP_001132882.1| RelA/SpoT domain-containing protein [Mycobacterium gilvum PYR-GCK]
 gi|145214690|gb|ABP44094.1| RelA/SpoT domain protein [Mycobacterium gilvum PYR-GCK]
Length=577

 Score =  272 bits (696),  Expect = 3e-71, Method: Compositional matrix adjust.
 Identities = 144/242 (60%), Positives = 169/242 (70%), Gaps = 4/242 (1%)

Query  1    MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV  60
            M FVG+DLAW  +N TGVA VD+DG L+ VGAA DD S+ AA+ PY   +CLVA DAPL+
Sbjct  1    MNFVGLDLAWGEKNQTGVAVVDSDGRLLHVGAATDDDSIAAAIAPYTAEECLVAIDAPLI  60

Query  61   VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR  120
            V N TG RPAE   NRDF +FEAGA PA T++PEF   PRAAR+A +L LD DP S+A R
Sbjct  61   VKNATGHRPAETRFNRDFSRFEAGARPAFTDRPEFKH-PRAARIAERLGLDTDPSSAAPR  119

Query  121  RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ  180
            RAIEVYPHPATV LF L R LKYK  P    +    ELLRLM  +EGL  A  R++V   
Sbjct  120  RAIEVYPHPATVVLFDLDRTLKYKRGP---FEDRHRELLRLMTFIEGLDDATPRLRVNRS  176

Query  181  PDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS  240
              WV LR++V  A + S L   EDP+DAV+CAYV LY   RP DVTIYGD  +GYI+TPS
Sbjct  177  VAWVELRKRVEAATKPSHLDRDEDPVDAVICAYVGLYWYHRPDDVTIYGDHASGYILTPS  236

Query  241  LP  242
            LP
Sbjct  237  LP  238


>gi|315442643|ref|YP_004075522.1| hypothetical protein Mspyr1_09980 [Mycobacterium sp. Spyr1]
 gi|315260946|gb|ADT97687.1| uncharacterized conserved protein [Mycobacterium sp. Spyr1]
Length=577

 Score =  271 bits (693),  Expect = 7e-71, Method: Compositional matrix adjust.
 Identities = 143/242 (60%), Positives = 169/242 (70%), Gaps = 4/242 (1%)

Query  1    MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV  60
            M FVG+DLAW  +N TGVA VD+DG L+ VGAA DD S+ AA+ PY   +CLVA DAPL+
Sbjct  1    MNFVGLDLAWGEKNQTGVAVVDSDGRLLHVGAATDDDSIAAAIAPYTAEECLVAIDAPLI  60

Query  61   VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR  120
            V N TG RPAE   NRDF +FEAGA PA +++PEF   PRAAR+A +L LD DP S+A R
Sbjct  61   VKNATGHRPAETRFNRDFSRFEAGARPAFSDRPEFKH-PRAARIAERLGLDTDPSSAAPR  119

Query  121  RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ  180
            RAIEVYPHPATV LF L R LKYK  P    +    ELLRLM  +EGL  A  R++V   
Sbjct  120  RAIEVYPHPATVVLFDLDRTLKYKRGP---FEDRHRELLRLMTFIEGLDDATPRLRVNRS  176

Query  181  PDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS  240
              WV LR++V  A + S L   EDP+DAV+CAYV LY   RP DVTIYGD  +GYI+TPS
Sbjct  177  VAWVELRKRVEAATKPSHLDRDEDPVDAVICAYVGLYWYHRPDDVTIYGDHASGYILTPS  236

Query  241  LP  242
            LP
Sbjct  237  LP  238


>gi|119718837|ref|YP_925802.1| RelA/SpoT domain-containing protein [Nocardioides sp. JS614]
 gi|119539498|gb|ABL84115.1| RelA/SpoT domain protein [Nocardioides sp. JS614]
Length=1046

 Score =  271 bits (692),  Expect = 9e-71, Method: Compositional matrix adjust.
 Identities = 141/242 (59%), Positives = 164/242 (68%), Gaps = 8/242 (3%)

Query  1    MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV  60
            M++VGVDLAW  R P+G+A +DA+  L+ +     D  + A L PYV G CLVAFDAPL+
Sbjct  498  MHYVGVDLAWGERRPSGLAVLDAEARLLHIATVHSDDEIEAHLAPYVGGSCLVAFDAPLI  557

Query  61   VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR  120
            V N TG RPAE AL RDFR+FEA  +PANT KPEF    R ARL ++L LDMDP S   R
Sbjct  558  VTNATGSRPAEQALGRDFRRFEAAPHPANTSKPEFVAGSRGARLCKRLRLDMDPRSGRPR  617

Query  121  RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ  180
            RAIEVYPHPAT+ LF L R LKYK K GR +DLL+SELL LM  VE +        VA  
Sbjct  618  RAIEVYPHPATIVLFGLGRTLKYKDKRGRDLDLLRSELLVLMAHVERI--------VATD  669

Query  181  PDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS  240
              W +LR QV  A RKS LR  ED +DAV+CAYVAL+A R P   T YGDF  GYIVTP+
Sbjct  670  RAWQALRTQVEEATRKSHLREVEDQVDAVICAYVALFAHRWPERTTTYGDFEQGYIVTPT  729

Query  241  LP  242
            LP
Sbjct  730  LP  731


>gi|289749292|ref|ZP_06508670.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289689879|gb|EFD57308.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length=135

 Score =  268 bits (685),  Expect = 6e-70, Method: Compositional matrix adjust.
 Identities = 135/135 (100%), Positives = 135/135 (100%), Gaps = 0/135 (0%)

Query  1    MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV  60
            MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV
Sbjct  1    MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV  60

Query  61   VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR  120
            VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR
Sbjct  61   VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR  120

Query  121  RAIEVYPHPATVALF  135
            RAIEVYPHPATVALF
Sbjct  121  RAIEVYPHPATVALF  135


>gi|108801530|ref|YP_641727.1| hypothetical protein Mmcs_4567 [Mycobacterium sp. MCS]
 gi|119870684|ref|YP_940636.1| hypothetical protein Mkms_4655 [Mycobacterium sp. KMS]
 gi|108771949|gb|ABG10671.1| conserved hypothetical protein [Mycobacterium sp. MCS]
 gi|119696773|gb|ABL93846.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=242

 Score =  266 bits (680),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 142/241 (59%), Positives = 164/241 (69%), Gaps = 10/241 (4%)

Query  1    MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV  60
            MYFVG+DLAW  R+PTGVA  D+DG LV + AA  DA ++A L PY    CL+A DAPLV
Sbjct  1    MYFVGIDLAWGERSPTGVAVADSDGSLVHLAAATTDADIVAQLMPYTAEQCLLAIDAPLV  60

Query  61   VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR  120
            V N +G RP EAALNRDFR FEAG +P+NT  P FA   R ARLA  L            
Sbjct  61   VTNPSGNRPCEAALNRDFRAFEAGCHPSNTGHPWFASGSRGARLAEALGAP---------  111

Query  121  RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ  180
             A+EVYPH ATVALF LP+ LKYK KPGR V  L+ ELLRL+  VE L +A   + V   
Sbjct  112  -AVEVYPHAATVALFGLPKTLKYKQKPGRDVAQLRGELLRLIGLVETLIRADPSLNVGQH  170

Query  181  PDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS  240
              WV+LR  V  A RK++LR AEDP+DAVVCAYVAL+A RRPADVT YGD  TG IVTP+
Sbjct  171  AGWVALRDAVRTATRKAELRRAEDPVDAVVCAYVALFATRRPADVTSYGDDATGRIVTPA  230

Query  241  L  241
            L
Sbjct  231  L  231


>gi|254231091|ref|ZP_04924418.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|124600150|gb|EAY59160.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
Length=176

 Score =  266 bits (679),  Expect = 3e-69, Method: Compositional matrix adjust.
 Identities = 139/163 (86%), Positives = 146/163 (90%), Gaps = 2/163 (1%)

Query  1    MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV  60
            MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV
Sbjct  1    MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV  60

Query  61   VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR  120
            VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR
Sbjct  61   VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR  120

Query  121  RAIEVYPHPAT-VALFRLPRALKYKAKPGRSVDLLKSELLRLM  162
            RAIEVYPHPAT  A+   PRA + + + G +     +  +RLM
Sbjct  121  RAIEVYPHPATGGAVSATPRA-EVQGQAGDAALTCSNRAMRLM  162


>gi|126437515|ref|YP_001073206.1| hypothetical protein Mjls_4950 [Mycobacterium sp. JLS]
 gi|126237315|gb|ABO00716.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=242

 Score =  266 bits (679),  Expect = 3e-69, Method: Compositional matrix adjust.
 Identities = 142/241 (59%), Positives = 164/241 (69%), Gaps = 10/241 (4%)

Query  1    MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV  60
            MYFVG+DLAW  R+PTGVA  D+DG LV + AA  DA ++A L PY    CL+A DAPLV
Sbjct  1    MYFVGIDLAWGERSPTGVAVADSDGSLVHLAAATTDADIVAQLMPYTAEQCLLAIDAPLV  60

Query  61   VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR  120
            V N +G RP EAALNRDFR FEAG +P+NT  P FA   R ARLA  L            
Sbjct  61   VTNPSGNRPCEAALNRDFRAFEAGCHPSNTGHPWFASGSRGARLAEALGAP---------  111

Query  121  RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ  180
             A+EVYPH ATVALF LP+ LKYK KPGR V  L+ ELLRL+  VE L +A   + V   
Sbjct  112  -AVEVYPHAATVALFGLPKTLKYKQKPGRDVAQLRGELLRLIGLVETLIRADPSLNVEQH  170

Query  181  PDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS  240
              WV+LR  V  A RK++LR AEDP+DAVVCAYVAL+A RRPADVT YGD  TG IVTP+
Sbjct  171  AGWVALRDAVRTATRKAELRRAEDPVDAVVCAYVALFATRRPADVTSYGDDATGRIVTPA  230

Query  241  L  241
            L
Sbjct  231  L  231


>gi|336119192|ref|YP_004573968.1| hypothetical protein MLP_35510 [Microlunatus phosphovorus NM-1]
 gi|334686980|dbj|BAK36565.1| hypothetical protein MLP_35510 [Microlunatus phosphovorus NM-1]
Length=633

 Score =  265 bits (676),  Expect = 6e-69, Method: Compositional matrix adjust.
 Identities = 130/241 (54%), Positives = 167/241 (70%), Gaps = 8/241 (3%)

Query  1    MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV  60
            ++F+G+DLAW  + PTG+A +D D  L+ V A R D  ++AAL  Y   DCL A DAP+V
Sbjct  3    VHFIGIDLAWGDKRPTGLAVIDNDARLLEVSAVRTDDEIVAALAAYAEDDCLAAIDAPIV  62

Query  61   VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR  120
            V N TG RPAE  L++DFR+F+A  +P+NT KPEFA+  RAAR+A++L LD+DP S   R
Sbjct  63   VTNATGSRPAEQQLSKDFRRFDAATHPSNTGKPEFANGTRAARVAKRLGLDIDPRSGRRR  122

Query  121  RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ  180
            RAIEVYPHPAT+ LF LP+ L+YKAKPGR +DLL+SELL LM  V G+        V+ +
Sbjct  123  RAIEVYPHPATIVLFGLPKVLRYKAKPGRDLDLLRSELLSLMTLVAGV--------VSTE  174

Query  181  PDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS  240
              W  LR QV  A RKS+LR  ED +DAV+CAY+A +   R    T YGD  TGYI+TP+
Sbjct  175  ETWAGLRHQVENATRKSELRHVEDQVDAVLCAYLAHFVHHRRDLTTCYGDLETGYIITPT  234

Query  241  L  241
            L
Sbjct  235  L  235


>gi|284032478|ref|YP_003382409.1| hypothetical protein Kfla_4592 [Kribbella flavida DSM 17836]
 gi|283811771|gb|ADB33610.1| conserved hypothetical protein [Kribbella flavida DSM 17836]
Length=275

 Score =  219 bits (558),  Expect = 3e-55, Method: Compositional matrix adjust.
 Identities = 119/242 (50%), Positives = 148/242 (62%), Gaps = 0/242 (0%)

Query  1    MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV  60
            M FVGVDLAW  R  TG+A  DA G L+     R D  +LA LR +  G C VAFDAP++
Sbjct  1    MRFVGVDLAWGRRGVTGLAVADATGRLLDAAVRRTDDDILAWLRRWTGGPCFVAFDAPVI  60

Query  61   VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR  120
            V N  G RP E  +++ F ++ A  + ANT    F D  RA  L   L LD+DP S++ R
Sbjct  61   VVNPAGHRPCERLISQYFGRYGASCHAANTAGASFVDGSRAVGLVEALDLDLDPTSTSPR  120

Query  121  RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ  180
            RA EVYPHPA VALF LPR L+YKAKPGR    L+SE+LRL + VE LA A   + V   
Sbjct  121  RAAEVYPHPALVALFDLPRVLQYKAKPGRDFHHLRSEMLRLAEYVESLATAPTPLHVKTC  180

Query  181  PDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS  240
              W +LR  +  A  K+DL+  ED +DAVVC Y+ALYA   P +V  +GD  TG I+TP 
Sbjct  181  DAWHNLRTGLAQATIKADLKRVEDTLDAVVCTYIALYAATNPTEVRYFGDPATGQILTPV  240

Query  241  LP  242
             P
Sbjct  241  TP  242


>gi|320333670|ref|YP_004170381.1| hypothetical protein Deima_1063 [Deinococcus maricopensis DSM 
21211]
 gi|319754959|gb|ADV66716.1| hypothetical protein Deima_1063 [Deinococcus maricopensis DSM 
21211]
Length=255

 Score =  139 bits (349),  Expect = 6e-31, Method: Compositional matrix adjust.
 Identities = 103/250 (42%), Positives = 137/250 (55%), Gaps = 15/250 (6%)

Query  1    MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV  60
            +  VG+DLAW+ RNPTGVA +DA G L+       DA +LA L  +  G  +VA DAPL+
Sbjct  6    LRLVGIDLAWSPRNPTGVAVLDATGTLLEARTLTSDADLLAFLHAHTPGPAVVAVDAPLI  65

Query  61   VANRTGQRPAEAALNRDFRQFEAGAYPAN-TEKPEF----ADVPRAARLARQLALDMDPL  115
            V N TG+R AEA L R + +F+AGA+PAN T    +     +  R A   R   ++   L
Sbjct  66   VPNDTGRRDAEAELARVYARFQAGAHPANRTLLGRYGGLRGEALRDALQTRGFTVNPANL  125

Query  116  SSATRRA-IEVYPHPATVALFRLPRALKYKAK-PGRSVDLLKSELLRLMDGVEGLAQAGV  173
                 RA + VYPH A VALFRL R LKYKAK  GR   L      R    +  LA A  
Sbjct  126  DRPDVRAVVGVYPHAAMVALFRLTRTLKYKAKRQGRDAQLAAWAAYRAH--LRALAFADP  183

Query  174  RMQVAGQPDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRR-PADVTIYGDFT  232
             +Q A      +L      + R   L+  ED +DA++CAYVALYA R   + + ++G+  
Sbjct  184  PLQGAD-----ALLNVDPASLRGRALKTHEDTVDALLCAYVALYAHRWGESRLQVFGNVQ  238

Query  233  TGYIVTPSLP  242
             GYI+TP+ P
Sbjct  239  AGYILTPAPP  248


>gi|86609079|ref|YP_477841.1| hypothetical protein CYB_1617 [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557621|gb|ABD02578.1| conserved hypothetical protein [Synechococcus sp. JA-2-3B'a(2-13)]
Length=261

 Score =  129 bits (323),  Expect = 6e-28, Method: Compositional matrix adjust.
 Identities = 98/264 (38%), Positives = 134/264 (51%), Gaps = 31/264 (11%)

Query  1    MYFVGVDLAWAGRNPTGVAAV----------DADGCLVGVGAARDDASVLAALRPYVVGD  50
            M  +G+DLAW+ RNP+G+A +          +  G LV     + D  +L  ++     D
Sbjct  1    MICIGLDLAWSPRNPSGLATLRVQLGDPGRQNLTGHLVDSRILQTDEEILDYIQAQAGED  60

Query  51   -CLVAFDAPLVVANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLA  109
             CLVA DAPL V N TGQR AEA LNR FR + AGA+PAN    E     R   L + LA
Sbjct  61   PCLVAVDAPLRVPNLTGQRRAEAELNRVFRAYAAGAHPANRRLLEKNGQVRGEALVQALA  120

Query  110  ---------LDMDPLSSATRRAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLR  160
                     ++   L   TR+  EV+PH A V+LF L R LKYKA+P R+    +     
Sbjct  121  SYGFREQASIERGKL---TRQVTEVFPHSALVSLFGLSRTLKYKARPRRTWPERQQAWQL  177

Query  161  LMDGVEGLAQAGVRMQVAGQPDWVSLRRQVTVAQRKS-DLRAAEDPIDAVVCAYVALYAQ  219
                +  LA A   +Q  G  + +    QV V   KS  L+  ED +DA++CAY+ALY  
Sbjct  178  YQHHLRSLAAADPALQ--GHEELL----QVEVGSLKSRRLKNYEDQVDALMCAYIALYGF  231

Query  220  RRPAD-VTIYGDFTTGYIVTPSLP  242
            R  ++    +G+   G+I TP  P
Sbjct  232  RWGSERCRSFGNLQEGHIFTPLPP  255


>gi|219849017|ref|YP_002463450.1| hypothetical protein Cagg_2130 [Chloroflexus aggregans DSM 9485]
 gi|219543276|gb|ACL25014.1| conserved hypothetical protein [Chloroflexus aggregans DSM 9485]
Length=263

 Score =  126 bits (316),  Expect = 4e-27, Method: Compositional matrix adjust.
 Identities = 96/263 (37%), Positives = 135/263 (52%), Gaps = 36/263 (13%)

Query  3    FVGVDLAWAGRNPTGVAAVDADGCLVGVGAAR---------DDASVLAALRPYVVGDC--  51
            ++G+DLAW+ RNP+G AA     C+     A+          + +++  +R  V+GD   
Sbjct  11   YLGLDLAWSSRNPSGFAA-----CVGTPAGAQLVQPPNRLLTNDAIVQTIRT-VIGDAPA  64

Query  52   LVAFDAPLVVANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALD  111
            ++A DAPLVV N TG+R AEA L   FR+++AG +PAN          R   L   LA+D
Sbjct  65   ILAIDAPLVVPNETGRRTAEAELAAAFRRYDAGPHPANRRLLARYGGVRGEALLAALAVD  124

Query  112  MDPLSSAT------RRAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGV  165
                +++       R  IEV+PHPATV LFRLP  L+YKA+PGR++   + EL R +  +
Sbjct  125  GFVYTASIEAGMSGRFIIEVFPHPATVVLFRLPHILRYKARPGRALAERRRELGRYLSLL  184

Query  166  EGLAQAGVRMQVAGQPDWV---SLRRQVTVAQRKS-DLRAAEDPIDAVVCAYVALYAQRR  221
             GL+         G P       L   + + Q     L+A ED  DA++CAY+ALY  R 
Sbjct  185  RGLS--------GGDPPLFGSDELWHDIDLDQLSPRSLKAVEDEADALLCAYIALYGHRW  236

Query  222  PAD-VTIYGDFTTGYIVTPSLPT  243
             A     YG    G I TP   T
Sbjct  237  GATRCRSYGTLEGGAIFTPDWST  259


>gi|86606078|ref|YP_474841.1| hypothetical protein CYA_1408 [Synechococcus sp. JA-3-3Ab]
 gi|86554620|gb|ABC99578.1| conserved hypothetical protein [Synechococcus sp. JA-3-3Ab]
Length=275

 Score =  121 bits (303),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 94/266 (36%), Positives = 137/266 (52%), Gaps = 33/266 (12%)

Query  1    MYFVGVDLAWAGRNPTGVAAVDAD----------GCLVGVGAARDDASVLAALRPYVVGD  50
            +  +G+DLAW+ RNP+GVA ++ +          G L      + D  ++  ++    GD
Sbjct  4    LICIGLDLAWSARNPSGVATLEVESGDPQAPNLTGHLRDNRLLQTDQEIVDYIQAQAGGD  63

Query  51   -CLVAFDAPLVVANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLAR---  106
             CLVA DAPL V N +GQR AEA LNR FR + AGA+PAN          R   L +   
Sbjct  64   PCLVAVDAPLRVPNPSGQRRAEAELNRVFRAYAAGAHPANRRLLAKNGQVRGEALVQALS  123

Query  107  ------QLALDMDPLSSATRRAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLR  160
                  Q +++   L+   R+  EV+PH A V+LF L R+L YKA+P R+  L + +  R
Sbjct  124  RYGFREQASIEQGSLA---RQITEVFPHSAMVSLFGLSRSLPYKARPRRTW-LQREQAWR  179

Query  161  L-MDGVEGLAQAGVRMQVAGQPDWVSLRRQVTVAQ-RKSDLRAAEDPIDAVVCAYVALYA  218
            L    +  LA A   +Q  G    +    QV V   R   L+  ED +DA++CAY+ALY 
Sbjct  180  LYQQHLRALASADPSLQ--GHEPLL----QVEVGSLRGRQLKNYEDQVDALMCAYIALYG  233

Query  219  QRRPAD-VTIYGDFTTGYIVTPSLPT  243
             R  ++    +G+   G+I TP  P+
Sbjct  234  FRWGSERCHSFGNLQEGHIFTPLPPS  259


>gi|163846988|ref|YP_001635032.1| hypothetical protein Caur_1415 [Chloroflexus aurantiacus J-10-fl]
 gi|222524810|ref|YP_002569281.1| hypothetical protein Chy400_1537 [Chloroflexus sp. Y-400-fl]
 gi|163668277|gb|ABY34643.1| conserved hypothetical protein [Chloroflexus aurantiacus J-10-fl]
 gi|222448689|gb|ACM52955.1| conserved hypothetical protein [Chloroflexus sp. Y-400-fl]
Length=268

 Score =  114 bits (284),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 93/250 (38%), Positives = 129/250 (52%), Gaps = 18/250 (7%)

Query  3    FVGVDLAWAGRNPTGVAAV----DADGCLVGVGAARDDASVLAALRPYVVGDC--LVAFD  56
            ++G+DLAW+ RNP+G+AA          +V     +  A ++A +R    GD   ++A D
Sbjct  9    YLGLDLAWSERNPSGLAAAWGTPSGAHLIVRPHHLKTTAEIVATIRA-TCGDAPAILAID  67

Query  57   APLVVANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALD---MD  113
            APL+V N TG+R AEA L   FRQ+ AG +PAN +        R   +   LA D     
Sbjct  68   APLLVPNETGRRLAEAELAAAFRQYHAGPHPANRQLLRRYGGLRGEEIIAALASDGFCYT  127

Query  114  PL---SSATRRAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQ  170
            P        R  +EV+PHPAT+ LF LPR L+YKA+ GRS+   + EL R +D +  L  
Sbjct  128  PTIESGGGGRLIVEVFPHPATIVLFGLPRILQYKARQGRSLVSRRHELRRYLDLLGSLIH  187

Query  171  AGVRMQVAGQPDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRR-PADVTIYG  229
            A   + +     W  +    T A   + L+A ED  DAV+CAY+ALY  R   A    +G
Sbjct  188  ADPPL-IGVDRIWEKVDLSDTGA---TALKAIEDEADAVLCAYIALYGHRWGAARCRSFG  243

Query  230  DFTTGYIVTP  239
                G I TP
Sbjct  244  TVDGGAIFTP  253


>gi|307153587|ref|YP_003888971.1| hypothetical protein Cyan7822_3760 [Cyanothece sp. PCC 7822]
 gi|306983815|gb|ADN15696.1| conserved hypothetical protein [Cyanothece sp. PCC 7822]
Length=250

 Score =  114 bits (284),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 86/254 (34%), Positives = 134/254 (53%), Gaps = 22/254 (8%)

Query  1    MYFVGVDLAWAGRNPTGVAAVDADGC---LVGVGAARDDASVLAALRPYV--VGDCLVAF  55
            M F+G+DLAW+    TGV A+        L+ +   +    +L  +  ++      L+A 
Sbjct  1    MKFIGIDLAWSS-GYTGVCALIWQNNQLELLELNHFQKVHDILIWIDDFIAPTEGALIAV  59

Query  56   DAPLVVANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFA--DVPRAARLARQLALDMD  113
            DAP ++ N TG R A+   ++ FR++ AG YPAN  +P FA   V   + L ++  L   
Sbjct  60   DAPTLITNHTGMRLADKLTHQYFRRYHAGCYPANLSRP-FARQTVAFGSSLEQRGFLHAP  118

Query  114  PLS--SATRRAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDG-VEGLAQ  170
             ++     R  IEV+PHPA V LF+L R LKYK  P +     +SEL++L +  V+ L  
Sbjct  119  TITPQQVGRFQIEVFPHPAMVNLFQLERILKYKKGPLKQR---QSELIKLYNYIVKNLTH  175

Query  171  AGVRMQVAGQPDWV--SLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRR-PADVTI  227
               ++ +    + +  SL++ +T  Q    L+A ED +D+++CAYVA Y     P    I
Sbjct  176  YQPKLVLNFTFELIDTSLKQPLTGKQ----LKAIEDQLDSLICAYVAAYWWYWGPERNLI  231

Query  228  YGDFTTGYIVTPSL  241
             GD  +GYIV P+L
Sbjct  232  LGDGDSGYIVIPAL  245


>gi|218437319|ref|YP_002375648.1| hypothetical protein PCC7424_0312 [Cyanothece sp. PCC 7424]
 gi|218170047|gb|ACK68780.1| conserved hypothetical protein [Cyanothece sp. PCC 7424]
Length=263

 Score =  108 bits (271),  Expect = 7e-22, Method: Compositional matrix adjust.
 Identities = 85/256 (34%), Positives = 129/256 (51%), Gaps = 28/256 (10%)

Query  1    MYFVGVDLAWAGRNPTGVAAV---DADGCLVGVGAARDDASVLAALRPYV--VGDCLVAF  55
            M F+G+DLAW+    +GV A+   +    LV +      A +L+ L  +V      L+A 
Sbjct  1    MKFIGIDLAWSS-GYSGVCALVWQENQLQLVELNRLEKIAEILSWLDDFVSPCEGALIAV  59

Query  56   DAPLVVANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALD----  111
            DAP ++ N+TG R  +   +  F ++ AG YPAN  +P FA    A  +   L+L+    
Sbjct  60   DAPTLIFNQTGMRLPDKLTHHYFHRYHAGCYPANLSRP-FA----AQTVGFGLSLEQRGF  114

Query  112  -----MDPLSSATRRAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVE  166
                 +DP     R  IEV+PHPA V LF+L + LKYK   GR +D  K EL++L     
Sbjct  115  IHAPTIDP-QQVGRYQIEVFPHPAMVNLFKLSKILKYKK--GR-LDSRKLELIKLYHYT-  169

Query  167  GLAQAGVRM-QVAGQPDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADV  225
             + Q  V   Q+     +  L  ++  +    +L+  ED +D+++CAYV  Y      D 
Sbjct  170  -VNQLTVYQPQLNLNQSFFDLGSRLQQSITGKELKEIEDKLDSLICAYVGAYWWYWGKDK  228

Query  226  T-IYGDFTTGYIVTPS  240
              I GD +TGYI+ P+
Sbjct  229  NLILGDASTGYIIIPA  244


>gi|186685205|ref|YP_001868401.1| hypothetical protein Npun_R5126 [Nostoc punctiforme PCC 73102]
 gi|186467657|gb|ACC83458.1| conserved hypothetical protein [Nostoc punctiforme PCC 73102]
Length=246

 Score =  103 bits (257),  Expect = 3e-20, Method: Compositional matrix adjust.
 Identities = 82/255 (33%), Positives = 127/255 (50%), Gaps = 28/255 (10%)

Query  1    MYFVGVDLAWAGRNPTGVAAVD-ADGCLVGVGAARDDA--SVLAALRPYVVGD--CLVAF  55
            M F+G+DL W  + P+G+  ++  DG L  +   R +A   +   +   V  D   ++A 
Sbjct  3    MKFIGIDLGWRSQ-PSGLCCLEWIDGQLQLLDLDRKEAIADIFTWIDRSVQPDEPAIIAV  61

Query  56   DAPLVVANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQL-------  108
            DAP ++ N TG R  +   ++ F ++ AG YPAN   P FAD  R      +L       
Sbjct  62   DAPTLIPNPTGSRLPDKLSHKYFGKYHAGCYPANQNLP-FAD--RTINFGLELESRGFAH  118

Query  109  ALDMDPLSSATRRAIEVYPHPATVALFRLPRALKYKAK--PGRSVDLLKSELLRLMDGVE  166
            A  ++P    +R  IEV+PHPA V LF L R LKYK      R ++L+K +   L+D + 
Sbjct  119  APTIEP-QKLSRYQIEVFPHPAIVNLFNLERILKYKKGRLSDRRLELIKLQNY-LLDILP  176

Query  167  GLAQAGVRMQVAGQPDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVT  226
              +     +++ G          + +    +DL+A ED +D++VCAYVA Y      +  
Sbjct  177  SFSPPLRSLRLCGS-------FLLEIPTTGADLKATEDKLDSLVCAYVAAYWWYWGEERN  229

Query  227  -IYGDFTTGYIVTPS  240
             + GD TTGYI+ P 
Sbjct  230  LVLGDRTTGYIIIPQ  244


>gi|170078853|ref|YP_001735491.1| hypothetical protein SYNPCC7002_A2257 [Synechococcus sp. PCC 
7002]
 gi|169886522|gb|ACB00236.1| conserved hypothetical protein [Synechococcus sp. PCC 7002]
Length=252

 Score =  103 bits (256),  Expect = 3e-20, Method: Compositional matrix adjust.
 Identities = 85/256 (34%), Positives = 124/256 (49%), Gaps = 29/256 (11%)

Query  1    MYFVGVDLAWAGRNPTGVAAV---DADGCLVGVGAARDDASVLAALRPYVVGDC--LVAF  55
            M F+GVD  W     +G+  +   D    +       D A ++  +   +  +   LVA 
Sbjct  1    MKFLGVDFGWTS-GASGLCCLEIQDQQLAIAQFDLLLDPAEIVTWVDQLLPKETMGLVAV  59

Query  56   DAPLVVANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPL  115
            DAP ++ N TG R  +   ++ F ++ AG YPAN  +P FA  PR      QL LD++ L
Sbjct  60   DAPTIIPNETGTRLPDRLTHKYFGKYHAGCYPANLNRP-FA--PRTT----QLGLDLEAL  112

Query  116  SSAT----------RRAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGV  165
                          R  IEV+PHPA V LF+L R +KYK   G+  D  + EL RL+  +
Sbjct  113  GFGHAPEIDARKPGRYQIEVFPHPAMVRLFQLERIIKYKK--GKLGD-RRQELQRLVGLI  169

Query  166  EGLAQAGVRMQVAGQPDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRR-PAD  224
            E +    +  Q++    W  L + +  A + SDL+  ED IDA+VCAYV  Y      A 
Sbjct  170  ETVLTT-LTPQLSLNHLWDDLVQPIPTA-KGSDLKEIEDRIDALVCAYVGAYWWYWGQAK  227

Query  225  VTIYGDFTTGYIVTPS  240
                GD  +GYI+ P+
Sbjct  228  NQTLGDHHSGYIIVPA  243


>gi|254416587|ref|ZP_05030338.1| hypothetical protein MC7420_5191 [Microcoleus chthonoplastes 
PCC 7420]
 gi|196176553|gb|EDX71566.1| hypothetical protein MC7420_5191 [Microcoleus chthonoplastes 
PCC 7420]
Length=246

 Score =  100 bits (249),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 81/264 (31%), Positives = 128/264 (49%), Gaps = 47/264 (17%)

Query  1    MYFVGVDLAWAGRNPTGVAAVD-ADGCLVGVGAARDDAS--VLAALRPYVVGD--CLVAF  55
            M F+G+DL W     +G+  ++ +DG L  +G  R  A+  +L  +  +       ++A 
Sbjct  1    MKFIGIDLGWTS-GASGLCCLNWSDGQLQLLGLNRKQATADILNWIDDWTAATEPAIIAV  59

Query  56   DAPLVVANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFAD--VPRAARLARQLALDMD  113
            DAP ++ N TG R  +   +R F ++ AG YPAN ++P FA   +     L  +  +   
Sbjct  60   DAPTLIPNATGMRLPDKLSHRYFHRYHAGCYPANRQRP-FAQRTIEFGLSLEARGFIHAP  118

Query  114  PLSSAT--RRAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRL----------  161
             ++  T  R  IEV+PHPA V LF L R LKYK   GR  +  + ELL+L          
Sbjct  119  QITPKTLGRYQIEVFPHPAIVHLFGLNRILKYKK--GRVAE-RQGELLKLYHLIREVLPS  175

Query  162  ----MDGVEGLAQAGVRMQVAGQPDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALY  217
                +DG++GL                S   ++T A     L+  ED +D+++CAY+A Y
Sbjct  176  LEPKLDGIDGLKD--------------SFSERLTGAT----LKELEDKLDSLICAYIAAY  217

Query  218  AQRRPADVT-IYGDFTTGYIVTPS  240
                  +   + GD +TGYI+ P+
Sbjct  218  WWYWGIERNWVLGDVSTGYIIVPA  241


>gi|119512218|ref|ZP_01631307.1| hypothetical protein N9414_08944 [Nodularia spumigena CCY9414]
 gi|119463116|gb|EAW44064.1| hypothetical protein N9414_08944 [Nodularia spumigena CCY9414]
Length=265

 Score =  100 bits (248),  Expect = 3e-19, Method: Compositional matrix adjust.
 Identities = 80/258 (32%), Positives = 132/258 (52%), Gaps = 37/258 (14%)

Query  1    MYFVGVDLAWAGRNPTGVAAVD---ADGCLVGVGAARDDASVLAALRPYVVGD--CLVAF  55
            M F+G+DL W  + P+G+  ++    +  ++ +      A +LA +   V  +   ++  
Sbjct  1    MKFIGIDLGWKSQ-PSGLCCLELIAGELQIIDLDRIELIADILAWIDKTVEPNEPAIIGV  59

Query  56   DAPLVVANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQL-------  108
            DAP ++ N  G R  +   ++ F ++ AG YPAN + P FA+  R      +L       
Sbjct  60   DAPTLIPNAIGSRLPDKLTHKYFGKYHAGCYPANQKLP-FAE--RTVNFGLELESRGFDH  116

Query  109  ALDMDPLSSATRRAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGL  168
            A  +DP     R  IEV+PHPA V LF+L R LKYK   GR ++  + EL++L + +   
Sbjct  117  APTIDP-QKLGRYQIEVFPHPAIVNLFKLERILKYKK--GR-INERRLELIKLQNYI---  169

Query  169  AQAGVRMQVAGQPDWVSLRRQVTVAQRKSD---LRAAEDPIDAVVCAYVA----LYAQRR  221
                + +     P   +LR   + ++  +    L+AAED +D+++CAYVA     +A++R
Sbjct  170  ----LNILPTLTPSLCTLRLCRSFSEIPTTGAALKAAEDKLDSLICAYVAAHWWYWAEQR  225

Query  222  PADVTIYGDFTTGYIVTP  239
                 + GD TTGYIV P
Sbjct  226  N---LVLGDRTTGYIVIP  240


>gi|16329344|ref|NP_440072.1| hypothetical protein slr1094 [Synechocystis sp. PCC 6803]
 gi|1651825|dbj|BAA16752.1| slr1094 [Synechocystis sp. PCC 6803]
 gi|339272437|dbj|BAK48924.1| hypothetical protein SYNGTS_0176 [Synechocystis sp. PCC 6803]
Length=261

 Score = 99.8 bits (247),  Expect = 4e-19, Method: Compositional matrix adjust.
 Identities = 78/268 (30%), Positives = 124/268 (47%), Gaps = 21/268 (7%)

Query  1    MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYV------VGD---C  51
            M F+G+DL W     +G+  +       G     +D +   +L          +G+    
Sbjct  1    MKFIGIDLGWRS-GESGLCRLQLQSTPTGDRLGIEDLTCRLSLEEIFAWLDKGLGEAEGV  59

Query  52   LVAFDAPLVVANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALD  111
            +VA DAP ++ N+TG R  +   ++ F ++ AG YPAN  +P         +L  +    
Sbjct  60   MVAVDAPTIIPNQTGTRLPDRLTHKYFGKYHAGCYPANLGRPFAERTTGVGKLLEERGFL  119

Query  112  MDPLSSATRRA---IEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEG-  167
              P   A R+    IEV+PHPA V LF+L R +KYK     S+   +  LL L   +E  
Sbjct  120  HAPEIQAQRQGRYQIEVFPHPAMVQLFQLERIIKYKKG---SLAKKRQGLLELQSYIENI  176

Query  168  LAQAGVRMQVAGQPDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVT-  226
            L Q    + +   P     R  +T+  +  +L+  ED  D+++CAY+  Y      +   
Sbjct  177  LPQLTPALDLTLPPGMEPWRSPLTLNGK--ELKHQEDQWDSLICAYIGAYWWYWGRERNW  234

Query  227  IYGDFTTGYIVTPSLPTDFRTAPDAGRR  254
            + GD +TGYIV P+L  D +  PDA + 
Sbjct  235  VLGDESTGYIVVPTLGAD-QPVPDAEKN  261


>gi|75909204|ref|YP_323500.1| hypothetical protein Ava_2995 [Anabaena variabilis ATCC 29413]
 gi|75702929|gb|ABA22605.1| conserved hypothetical protein [Anabaena variabilis ATCC 29413]
Length=246

 Score = 97.1 bits (240),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 83/255 (33%), Positives = 126/255 (50%), Gaps = 31/255 (12%)

Query  1    MYFVGVDLAWAGRNPTGVAAVD-ADGCLVGVGAARDDA--SVLAALRPYVVGD--CLVAF  55
            M F+G+DL W  + P+G+  +   +G L  V   R DA   +   +  +V  D   ++  
Sbjct  1    MKFIGIDLGWKSQ-PSGLCCLQLIEGKLEIVDLDRQDAIAHIFTWIDTWVQPDEPAIIGV  59

Query  56   DAPLVVANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQL---ALDM  112
            DAP ++ N TG R  +   ++ F ++ AG YPAN +   FA+  R      +L       
Sbjct  60   DAPTLIPNSTGSRLPDKLTHKYFGKYHAGCYPAN-QGLAFAE--RTINFGLELESRGFAH  116

Query  113  DPLSSAT---RRAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLA  169
             P   A    R  IEV+PHPA V LF L R LKYK   GR +   + EL++L   +  + 
Sbjct  117  APTIEAQKLGRYQIEVFPHPAIVHLFSLDRILKYKK--GR-ISERRLELIKLYQYIVDIL  173

Query  170  QAGVRMQVAGQPDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVA----LYAQRRPADV  225
                 M+ A     +SL     +    ++L+AAED +D+++CAYVA     + ++R    
Sbjct  174  PT---MEPALCVKKLSLGE---IPHTGAELKAAEDKLDSLICAYVAAHWWYWGEQRN---  224

Query  226  TIYGDFTTGYIVTPS  240
             + GD TTGYIV P 
Sbjct  225  LVLGDRTTGYIVIPK  239


>gi|113475388|ref|YP_721449.1| hypothetical protein Tery_1712 [Trichodesmium erythraeum IMS101]
 gi|110166436|gb|ABG50976.1| conserved hypothetical protein [Trichodesmium erythraeum IMS101]
Length=243

 Score = 95.9 bits (237),  Expect = 5e-18, Method: Compositional matrix adjust.
 Identities = 79/259 (31%), Positives = 121/259 (47%), Gaps = 38/259 (14%)

Query  1    MYFVGVDLAW-AGRN--------PTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDC  51
            M F+G+DL W +G++           +  +D D C++ +    D  + +  L P +    
Sbjct  1    MKFIGIDLGWQSGKSGLCCLQYSDNKLKILDID-CILEI---EDILNWIDNLTP-LSTPA  55

Query  52   LVAFDAPLVVANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQL---  108
            L+A DAP ++ N+TG R  +   ++ F ++ AG YPAN  +P FA   R  +    L   
Sbjct  56   LIAVDAPTIIPNKTGTRLPDKLTHKYFGRYHAGCYPANLNRP-FAQ--RTVKFGISLEAK  112

Query  109  ----ALDMDPLSSATRRAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDG  164
                A  + P     R  IEV+PHPA V LF+L + LKYK   GR  D  K ELL+L   
Sbjct  113  EFIHAPTIKP-QKIGRFQIEVFPHPAIVNLFQLEKILKYKK--GRLAD-RKLELLKLQKY  168

Query  165  VEGLAQAGVRMQVAGQPDWVSLRRQVTVAQRKS--DLRAAEDPIDAVVCAYVALYAQRR-  221
            +       + +    +P  V     +      S   L+  ED +D+++CAY+  Y     
Sbjct  169  I-------INILPTLEPALVISHNFLNTETINSITTLKTTEDKLDSLICAYIGAYWWYWG  221

Query  222  PADVTIYGDFTTGYIVTPS  240
                 + G+ TTGYIV P 
Sbjct  222  ETKNLVLGNHTTGYIVVPK  240


>gi|17228766|ref|NP_485314.1| hypothetical protein alr1271 [Nostoc sp. PCC 7120]
 gi|17130618|dbj|BAB73228.1| alr1271 [Nostoc sp. PCC 7120]
Length=246

 Score = 95.1 bits (235),  Expect = 8e-18, Method: Compositional matrix adjust.
 Identities = 83/257 (33%), Positives = 124/257 (49%), Gaps = 35/257 (13%)

Query  1    MYFVGVDLAWAGRNPTGVAAVD-ADGCLVGVGAARDDA--SVLAALRPYVVGD--CLVAF  55
            M F+G+DL W  + P+G+  +   +G L  V   R DA   +   +  +V  +   ++  
Sbjct  1    MKFIGIDLGWKSQ-PSGLCCLQLIEGKLEIVDLDRQDAIAHIFTWIDTWVQPNEPAIIGV  59

Query  56   DAPLVVANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQL---ALDM  112
            DAP ++ N TG R  +   ++ F ++ AG YPAN +   FA+  R      +L       
Sbjct  60   DAPTLIPNLTGSRLPDKLTHKYFGKYHAGCYPAN-QGLAFAE--RTINFGLELESRGFAH  116

Query  113  DPLSSAT---RRAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLA  169
             P   A    R  IEV+PHPA V LF L R LKYK   GR +   + EL++L        
Sbjct  117  APTIEAQKLGRYQIEVFPHPAIVQLFSLDRILKYKK--GR-ISERRLELIKLY-------  166

Query  170  QAGVRMQVAGQPDWVSLRRQV-TVAQRKSDLRAAEDPIDAVVCAYVALY-----AQRRPA  223
            Q  V +    +P     +  +  +    ++L+AAED +D+++CAYVA Y      QR   
Sbjct  167  QYIVDILPTMEPTLCVKKLSLGEIPYTGAELKAAEDKLDSLICAYVAAYWWYWGEQRN--  224

Query  224  DVTIYGDFTTGYIVTPS  240
               + GD TTGYIV P 
Sbjct  225  --LVLGDRTTGYIVIPK  239


>gi|261855902|ref|YP_003263185.1| hypothetical protein Hneap_1303 [Halothiobacillus neapolitanus 
c2]
 gi|261836371|gb|ACX96138.1| conserved hypothetical protein [Halothiobacillus neapolitanus 
c2]
Length=246

 Score = 92.0 bits (227),  Expect = 7e-17, Method: Compositional matrix adjust.
 Identities = 76/264 (29%), Positives = 121/264 (46%), Gaps = 37/264 (14%)

Query  1    MYFVGVDLAW-AGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVG-DCL------  52
            M   G+D+AW    +PT +A           G  ++D   L A++P ++G  C+      
Sbjct  1    MTLAGIDMAWITASHPTAIA----------FGELQNDQLTLIAIQPDLLGLSCIQNALES  50

Query  53   ------VAFDAPLVVANRTGQRPAEAALNRDFRQFEAGAYPANTEK-PEFADVPRAARLA  105
                  VA DAP ++ N+ G R  E  L R +   +AG +P N ++ PE   V  +  LA
Sbjct  51   APDLRGVAIDAPTIITNQYGARACERELARCYGGRKAGCHPTNRDRYPEADSVALSDWLA  110

Query  106  RQLALDMDPLSSATRRAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGV  165
             +          AT+  IE YPHPA + +F+L     YK  P   V   +   + L   +
Sbjct  111  HR--RHEHACQQATKWQIECYPHPALIEIFQLAERHLYKKGP---VPARQQGQIELAQRL  165

Query  166  EGLAQA-GVRMQVAGQPDWV-SLRRQVTVAQRKSDLRAAEDPIDAVVCAYVA-LYAQRRP  222
            + LAQ+  + + VAG  +W      +   + R   L+  ED +DA++C Y+A L+A+  P
Sbjct  166  KSLAQSPKLALIVAG--EWSHHFSAEYIQSLRGRSLKQNEDVLDAIICLYIAGLFARSEP  223

Query  223  ADVTIYGDFTTGYIVTPSLPTDFR  246
                ++G    GYI  P    + R
Sbjct  224  GQ--LFGSVDLGYIYVPQCHCESR  245


>gi|329895032|ref|ZP_08270797.1| hypothetical protein IMCC3088_1211 [gamma proteobacterium IMCC3088]
 gi|328922528|gb|EGG29865.1| hypothetical protein IMCC3088_1211 [gamma proteobacterium IMCC3088]
Length=238

 Score = 91.3 bits (225),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 78/245 (32%), Positives = 112/245 (46%), Gaps = 13/245 (5%)

Query  1    MYFVGVDLAWAGRNPTGVAAV-DADGCLVGVGAARDDASVLAALRPYVVGDCL--VAFDA  57
            M   G D+AW   N     A+ +  G  + V   R     + A    +V   +  +A DA
Sbjct  1    MRIAGFDMAWRPENNNSALAIGELVGTELNVLFCRVATQSVEAWVADIVSSSIEGIAIDA  60

Query  58   PLVVANRTGQRPAEAALNRDFRQFEAGAYPAN-TEKPEFADVPRAARLARQLALDMDPLS  116
            PL++ N+ GQR  EA LN+ FR  +AG +P+N T  P  A V RAA + R    +     
Sbjct  61   PLIINNQEGQRGCEAQLNQVFRGAKAGCHPSNLTLYPNAASV-RAAEMLRLHGFEH---L  116

Query  117  SATRRAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQ  176
                  +E YPHP+ V LF     L YK     SV   K   ++L   +  L  A V + 
Sbjct  117  GTKHFMLECYPHPSMVELFGWRERLLYKRG---SVAERKQGQIQLAQAILSLQTADVSL-  172

Query  177  VAGQPDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYI  236
            V   P   SL+       R + ++A ED +DA+VC Y+A   Q   A   ++GD  +GY+
Sbjct  173  VIEDPILKSLQADYIEDLRGAAVKANEDLLDALVCLYIAALYQTDQA-AYVFGDVESGYV  231

Query  237  VTPSL  241
              P  
Sbjct  232  WVPKF  236


>gi|22299687|ref|NP_682934.1| hypothetical protein tlr2144 [Thermosynechococcus elongatus BP-1]
 gi|22295871|dbj|BAC09696.1| tlr2144 [Thermosynechococcus elongatus BP-1]
Length=251

 Score = 79.3 bits (194),  Expect = 5e-13, Method: Compositional matrix adjust.
 Identities = 76/267 (29%), Positives = 111/267 (42%), Gaps = 46/267 (17%)

Query  1    MYFVGVDLAWAGRNPTGVAAVDADG---CLVGVGAARDDASVLAALRPYVVGDC------  51
            M F+GVDLAW G   +G   +   G    +V +  A D   +LA    ++  D       
Sbjct  1    MRFLGVDLAWQG-GASGYCCLQWQGQDLVVVALDRACDTQELLA----WIDRDAPSAQAA  55

Query  52   LVAFDAPLVVANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALD  111
            +VA DAPL++ N  G R  +   ++   ++ AG YPAN + P  +     ++   Q    
Sbjct  56   MVAVDAPLIIPNFRGMRSCDRQSHQVLGRYHAGCYPANQQSPFASHTTGFSQALSQRGFH  115

Query  112  MDPL---SSATRRAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGL  168
              P      + R  IEV+PH   +ALF+L + +KYK          K  L     G+  L
Sbjct  116  HAPTIRPQQSGRFQIEVFPHATAIALFQLDQIIKYK----------KGRLTERRRGLARL  165

Query  169  AQAGVRMQVAGQPDWVSLRRQVTVAQRKS--DLRAAEDPIDAVVCAYVA----LYAQRR-  221
             +         +P    LR Q   A   +  DL+  ED +DA++CAY       +   R 
Sbjct  166  RELMTTHLCHCEP---PLRLQFPEALPTTGRDLKVLEDQLDAILCAYTGASWWYWGSDRH  222

Query  222  ---------PADVTIYGDFTTGYIVTP  239
                     PA  T      TGYIV P
Sbjct  223  WVLGSESFSPAPATTDAYLKTGYIVVP  249


>gi|345010362|ref|YP_004812716.1| hypothetical protein Strvi_2726 [Streptomyces violaceusniger 
Tu 4113]
 gi|344036711|gb|AEM82436.1| hypothetical protein Strvi_2726 [Streptomyces violaceusniger 
Tu 4113]
Length=296

 Score = 77.4 bits (189),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 72/234 (31%), Positives = 102/234 (44%), Gaps = 25/234 (10%)

Query  3    FVGVDLAWAGR------NPTGVAAVDADGCLVGVGAARDDASVLAAL-RPYVVGDCLVAF  55
            F+G+DLAWA        N TGVAA+D  G ++  G  R     ++ L R  V G  L   
Sbjct  6    FIGIDLAWAQSGARTKPNETGVAAIDTHGVVIECGWTRGLEETMSWLARTAVDGSTLAFV  65

Query  56   DAPLVVANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPL  115
            DAPLVV N  GQRP E  + R + +++  A   N   P  A V    RL        D  
Sbjct  66   DAPLVVDNPAGQRPCEREVGRRYGRWKVSANSTNQSSPRRAGVLLRERLEESGWSYDDGR  125

Query  116  SSATRRAI---EVYPHPATVALFRLPRALK---YKAKPGRSVD-----LLKSELLRLMDG  164
                   +   E YP+   V    L    +   YK +P R        +  +E  RL+  
Sbjct  126  GGPPTGGLVFSECYPYTTLVGAAELGYDQERPTYKRRPARVQTAQWRAVRAAECDRLIGH  185

Query  165  VEGLAQAGVRMQVAGQPDWVSLRRQVTVA---QRKSDLRAAEDPIDAVVCAYVA  215
            + GLA A     ++  P    + RQ+      Q+ +D +  ED IDA++CA+ A
Sbjct  186  MTGLATADPPFLLSSHP----VSRQLLSEPSPQKAADYKHREDLIDALLCAWTA  235


>gi|344327288|gb|EGW38725.1| phosphoribosyl-ATP pyrophosphohydrolase domain protein [Desulfosporosinus 
sp. OT]
Length=361

 Score = 76.6 bits (187),  Expect = 3e-12, Method: Compositional matrix adjust.
 Identities = 62/256 (25%), Positives = 111/256 (44%), Gaps = 20/256 (7%)

Query  1    MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGA-ARDDASVLAALRPYVVGDCLVAFDAPL  59
            M ++G+DLAW   N +G+  +  +G +V   +    D  + A +  +   + +V  DAPL
Sbjct  1    MNYIGIDLAWTYANESGICVIADNGEIVYCESKVFSDEMIAAIVEEHAQEEAIVGIDAPL  60

Query  60   VVANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFA----DVPRAARLAR-------QL  108
            +V N TG R  + A+ R+  +         T    F      V R   + +         
Sbjct  61   IVNNETGSRYCDGAIMRE--KIHGKNLSVFTCSKRFMLNHFGVVRGEEVVKAIIKRVPDF  118

Query  109  ALDMDPLSSATRRAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGL  168
            +L  D L++     IE +P   T+ LF     +KYK K     +  K+E+ R+++ ++ +
Sbjct  119  SLTGD-LTNKKHVIIETFPTGITLGLFPDAFPVKYKIKHKVKFETTKTEMGRMVNLLKRV  177

Query  169  AQAGVRMQVAGQPDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIY  228
            +       V    D+ +    +  A  K + +  ED +DA +CAY A +       V  +
Sbjct  178  SD--FNPPVHNIEDFFNHSSSIQ-AMSKKEFKNLEDKLDAFLCAYAAYWLANHNGKV--F  232

Query  229  GDFTTGYIVTPSLPTD  244
            GD   G+I  P +  +
Sbjct  233  GDDQDGFITIPIIDEN  248


>gi|126668601|ref|ZP_01739554.1| hypothetical protein MELB17_15576 [Marinobacter sp. ELB17]
 gi|126626931|gb|EAZ97575.1| hypothetical protein MELB17_15576 [Marinobacter sp. ELB17]
Length=243

 Score = 73.2 bits (178),  Expect = 4e-11, Method: Compositional matrix adjust.
 Identities = 72/242 (30%), Positives = 106/242 (44%), Gaps = 13/242 (5%)

Query  5    GVDLAWAG-RNPTGVAAVD-ADGCLVGVGAARDDASVLAALRPYVVGDCL--VAFDAPLV  60
            GVDLAW G RNPT +A    ADG +   G   +     A        D L  VA D PL+
Sbjct  6    GVDLAWQGNRNPTAIAVGHVADGAIAVTGVFENLHGFDAVASALDSIDSLHGVAVDGPLI  65

Query  61   VANRTGQRPAEAALNRDFRQFEAGAYPAN-TEKPEFADVPRAARLARQLALDMDPLSSAT  119
            + N++GQRP E  +   +   +A  +  N T  P    V     L           +   
Sbjct  66   IRNQSGQRPCERGVAVAYAARKASCHACNLTLFPASNGVLLGDHLHAAGFGHAA--APGQ  123

Query  120  RRAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAG  179
            +  +E YPHPA + +F+LP  L Y  K G+  D  K +    +  +        RM +  
Sbjct  124  KWQLECYPHPALIEIFQLPERLLY--KKGQVAD--KRQGQARLASLLLSLAQSQRMMLTI  179

Query  180  QPDWV-SLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVT  238
             P ++  L  Q   + R + L+  ED +DA+VC Y+A   Q   ++  ++G    GYI  
Sbjct  180  GPLFLPYLDTQRIQSLRGAALKHNEDVLDAIVCLYIAALYQAGNSE-RVFGCTEQGYIYV  238

Query  239  PS  240
            P 
Sbjct  239  PQ  240


>gi|344330468|gb|EGW41762.1| phosphoribosyl-ATP pyrophosphohydrolase domain protein [Desulfosporosinus 
sp. OT]
Length=400

 Score = 71.6 bits (174),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 65/254 (26%), Positives = 103/254 (41%), Gaps = 22/254 (8%)

Query  1    MYFVGVDLAWAGRNPTGVAAV-DADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPL  59
            M+++G+DLAW   N +G+  + D    +        D  +   +  Y  G  +V  DAPL
Sbjct  40   MHYIGIDLAWTYANESGICVIADYGEIIFCESKVFSDEMIADIVAEYAQGGAIVGIDAPL  99

Query  60   VVANRTGQRPAEAALNRD------------FRQFEAGAYPANTEKPEFADVPRAARLARQ  107
            +V N TG R  + A+ R+             R F    Y       E     R    A  
Sbjct  100  IVNNETGSRHCDGAIMREKIHGRNLSVFNCSRGFMLKHYGV-VRGEEVVKAIRKRMPAFA  158

Query  108  LALDMDPLSSATRRAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEG  167
            L  D   LS+     IE +P   T+ LF     +KYK K   + +  K+E+ R++  ++ 
Sbjct  159  LTGD---LSNEKHVIIETFPTGITLGLFPDAFPVKYKIKHKIAFETTKTEMGRMVSLLQR  215

Query  168  LAQAGVRMQVAGQPDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTI  227
            L        V    ++ +    +  A  K   +  ED +DA +CAY A +  +    V  
Sbjct  216  LGD--FNPPVHNIEEFFNYSPSIQ-AMSKKGYKNLEDRLDAFLCAYAAYWLAKNKGKVI-  271

Query  228  YGDFTTGYIVTPSL  241
             GD   G+I  P +
Sbjct  272  -GDDRDGFITIPVI  284


>gi|269925371|ref|YP_003321994.1| hypothetical protein Tter_0250 [Thermobaculum terrenum ATCC BAA-798]
 gi|269789031|gb|ACZ41172.1| conserved hypothetical protein [Thermobaculum terrenum ATCC BAA-798]
Length=391

 Score = 70.5 bits (171),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 75/254 (30%), Positives = 113/254 (45%), Gaps = 28/254 (11%)

Query  1    MYFVGVDLAW----AGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGD-CLVAF  55
            M F+G+DLAW    A R  TG A +D  G ++       D S+L  +   +  +  +VA 
Sbjct  1    MRFIGIDLAWSLINADRPETGAAVIDESGNILSQANLSTDESILDFVLSNIDQEGAIVAI  60

Query  56   DAPLVVANRTGQRPAEAALNRDFRQFEAGAYPANTE--KPEFADVPRAARLARQLALD--  111
            DAP+VV N  G R  E AL    +  +   YP+N    +     + R   L  +L +   
Sbjct  61   DAPIVVPNLEGSRRCEIAL----QSMKIPVYPSNRSLLEKNLGGI-RGEILTHKLEIHGF  115

Query  112  --MDPLS--SATRRAIEVYPHPATVALF-RLPRALKYKAKPGRSVDLLKSELLRLMDGVE  166
               D +S    T+  +EVYP      LF ++P     KAK  RSV  L   +L L   ++
Sbjct  116  RIQDSISPGEPTKAIVEVYPRATISRLFGKVPSYKGSKAK--RSV--LAHGILHLNRLIQ  171

Query  167  GLAQAGVRMQVAGQPDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVT  226
                  +R   +   D   L    T+  R+  L+   D +DAV+ AYV   A +    V 
Sbjct  172  EALDPPIRWIRSPIEDPARLE---TLTPRQ--LKHIADILDAVLAAYVGYLAWKEDGRVE  226

Query  227  IYGDFTTGYIVTPS  240
            + GD   G+I+ P+
Sbjct  227  VIGDVHEGFILIPT  240



Lambda     K      H
   0.322    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 382276364284




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40