BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0776c
Length=259
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607916|ref|NP_215290.1| hypothetical protein Rv0776c [Mycob... 510 7e-143
gi|289446341|ref|ZP_06436085.1| conserved hypothetical protein [... 508 3e-142
gi|294996253|ref|ZP_06801944.1| hypothetical protein Mtub2_17541... 498 3e-139
gi|340625795|ref|YP_004744247.1| hypothetical protein MCAN_07801... 485 3e-135
gi|339293797|gb|AEJ45908.1| hypothetical protein CCDC5079_0718 [... 454 6e-126
gi|296166476|ref|ZP_06848908.1| conserved hypothetical protein [... 380 1e-103
gi|183984885|ref|YP_001853176.1| hypothetical protein MMAR_4917 ... 370 1e-100
gi|289749286|ref|ZP_06508664.1| conserved hypothetical protein [... 367 6e-100
gi|118616330|ref|YP_904662.1| hypothetical protein MUL_0489 [Myc... 363 1e-98
gi|240172808|ref|ZP_04751467.1| hypothetical protein MkanA1_2608... 357 8e-97
gi|254818445|ref|ZP_05223446.1| hypothetical protein MintA_00892... 338 7e-91
gi|342862180|ref|ZP_08718822.1| hypothetical protein MCOL_24941 ... 316 2e-84
gi|118462412|ref|YP_879996.1| hypothetical protein MAV_0720 [Myc... 315 3e-84
gi|41406708|ref|NP_959544.1| hypothetical protein MAP0610c [Myco... 312 3e-83
gi|118471774|ref|YP_890075.1| hypothetical protein MSMEG_5849 [M... 308 4e-82
gi|311743304|ref|ZP_07717111.1| RelA/SpoT domain protein [Aeromi... 288 5e-76
gi|326333189|ref|ZP_08199436.1| RelA/SpoT-like protein [Nocardio... 278 7e-73
gi|120406094|ref|YP_955923.1| RelA/SpoT domain-containing protei... 274 1e-71
gi|145222204|ref|YP_001132882.1| RelA/SpoT domain-containing pro... 272 3e-71
gi|315442643|ref|YP_004075522.1| hypothetical protein Mspyr1_099... 271 7e-71
gi|119718837|ref|YP_925802.1| RelA/SpoT domain-containing protei... 271 9e-71
gi|289749292|ref|ZP_06508670.1| conserved hypothetical protein [... 268 6e-70
gi|108801530|ref|YP_641727.1| hypothetical protein Mmcs_4567 [My... 266 2e-69
gi|254231091|ref|ZP_04924418.1| conserved hypothetical protein [... 266 3e-69
gi|126437515|ref|YP_001073206.1| hypothetical protein Mjls_4950 ... 266 3e-69
gi|336119192|ref|YP_004573968.1| hypothetical protein MLP_35510 ... 265 6e-69
gi|284032478|ref|YP_003382409.1| hypothetical protein Kfla_4592 ... 219 3e-55
gi|320333670|ref|YP_004170381.1| hypothetical protein Deima_1063... 139 6e-31
gi|86609079|ref|YP_477841.1| hypothetical protein CYB_1617 [Syne... 129 6e-28
gi|219849017|ref|YP_002463450.1| hypothetical protein Cagg_2130 ... 126 4e-27
gi|86606078|ref|YP_474841.1| hypothetical protein CYA_1408 [Syne... 121 1e-25
gi|163846988|ref|YP_001635032.1| hypothetical protein Caur_1415 ... 114 2e-23
gi|307153587|ref|YP_003888971.1| hypothetical protein Cyan7822_3... 114 2e-23
gi|218437319|ref|YP_002375648.1| hypothetical protein PCC7424_03... 108 7e-22
gi|186685205|ref|YP_001868401.1| hypothetical protein Npun_R5126... 103 3e-20
gi|170078853|ref|YP_001735491.1| hypothetical protein SYNPCC7002... 103 3e-20
gi|254416587|ref|ZP_05030338.1| hypothetical protein MC7420_5191... 100 2e-19
gi|119512218|ref|ZP_01631307.1| hypothetical protein N9414_08944... 100 3e-19
gi|16329344|ref|NP_440072.1| hypothetical protein slr1094 [Synec... 99.8 4e-19
gi|75909204|ref|YP_323500.1| hypothetical protein Ava_2995 [Anab... 97.1 2e-18
gi|113475388|ref|YP_721449.1| hypothetical protein Tery_1712 [Tr... 95.9 5e-18
gi|17228766|ref|NP_485314.1| hypothetical protein alr1271 [Nosto... 95.1 8e-18
gi|261855902|ref|YP_003263185.1| hypothetical protein Hneap_1303... 92.0 7e-17
gi|329895032|ref|ZP_08270797.1| hypothetical protein IMCC3088_12... 91.3 1e-16
gi|22299687|ref|NP_682934.1| hypothetical protein tlr2144 [Therm... 79.3 5e-13
gi|345010362|ref|YP_004812716.1| hypothetical protein Strvi_2726... 77.4 2e-12
gi|344327288|gb|EGW38725.1| phosphoribosyl-ATP pyrophosphohydrol... 76.6 3e-12
gi|126668601|ref|ZP_01739554.1| hypothetical protein MELB17_1557... 73.2 4e-11
gi|344330468|gb|EGW41762.1| phosphoribosyl-ATP pyrophosphohydrol... 71.6 1e-10
gi|269925371|ref|YP_003321994.1| hypothetical protein Tter_0250 ... 70.5 2e-10
>gi|15607916|ref|NP_215290.1| hypothetical protein Rv0776c [Mycobacterium tuberculosis H37Rv]
gi|15840191|ref|NP_335228.1| hypothetical protein MT0800 [Mycobacterium tuberculosis CDC1551]
gi|31791964|ref|NP_854457.1| hypothetical protein Mb0799c [Mycobacterium bovis AF2122/97]
68 more sequence titles
Length=259
Score = 510 bits (1314), Expect = 7e-143, Method: Compositional matrix adjust.
Identities = 259/259 (100%), Positives = 259/259 (100%), Gaps = 0/259 (0%)
Query 1 MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV 60
MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV
Sbjct 1 MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV 60
Query 61 VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR 120
VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR
Sbjct 61 VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR 120
Query 121 RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ 180
RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ
Sbjct 121 RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ 180
Query 181 PDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS 240
PDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS
Sbjct 181 PDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS 240
Query 241 LPTDFRTAPDAGRRARARR 259
LPTDFRTAPDAGRRARARR
Sbjct 241 LPTDFRTAPDAGRRARARR 259
>gi|289446341|ref|ZP_06436085.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
gi|289419299|gb|EFD16500.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
Length=259
Score = 508 bits (1308), Expect = 3e-142, Method: Compositional matrix adjust.
Identities = 258/259 (99%), Positives = 258/259 (99%), Gaps = 0/259 (0%)
Query 1 MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV 60
MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV
Sbjct 1 MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV 60
Query 61 VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR 120
VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR
Sbjct 61 VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR 120
Query 121 RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ 180
RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ
Sbjct 121 RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ 180
Query 181 PDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS 240
PDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS
Sbjct 181 PDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS 240
Query 241 LPTDFRTAPDAGRRARARR 259
LP DFRTAPDAGRRARARR
Sbjct 241 LPIDFRTAPDAGRRARARR 259
>gi|294996253|ref|ZP_06801944.1| hypothetical protein Mtub2_17541 [Mycobacterium tuberculosis
210]
gi|313657594|ref|ZP_07814474.1| hypothetical protein MtubKV_04196 [Mycobacterium tuberculosis
KZN V2475]
gi|339297437|gb|AEJ49547.1| hypothetical protein CCDC5180_0710 [Mycobacterium tuberculosis
CCDC5180]
Length=254
Score = 498 bits (1283), Expect = 3e-139, Method: Compositional matrix adjust.
Identities = 253/254 (99%), Positives = 254/254 (100%), Gaps = 0/254 (0%)
Query 6 VDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLVVANRT 65
+DLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLVVANRT
Sbjct 1 MDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLVVANRT 60
Query 66 GQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATRRAIEV 125
GQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATRRAIEV
Sbjct 61 GQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATRRAIEV 120
Query 126 YPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQPDWVS 185
YPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQPDWVS
Sbjct 121 YPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQPDWVS 180
Query 186 LRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPSLPTDF 245
LRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPSLPTDF
Sbjct 181 LRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPSLPTDF 240
Query 246 RTAPDAGRRARARR 259
RTAPDAGRRARARR
Sbjct 241 RTAPDAGRRARARR 254
>gi|340625795|ref|YP_004744247.1| hypothetical protein MCAN_07801 [Mycobacterium canettii CIPT
140010059]
gi|340003985|emb|CCC43120.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=259
Score = 485 bits (1248), Expect = 3e-135, Method: Compositional matrix adjust.
Identities = 244/250 (98%), Positives = 247/250 (99%), Gaps = 0/250 (0%)
Query 1 MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV 60
MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV
Sbjct 1 MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV 60
Query 61 VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR 120
V NRTGQRPAEAALNRDFR+FEAGAYPANTEKPEFAD PRAARLARQLALDMDPLSSATR
Sbjct 61 VTNRTGQRPAEAALNRDFRRFEAGAYPANTEKPEFADGPRAARLARQLALDMDPLSSATR 120
Query 121 RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ 180
RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ
Sbjct 121 RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ 180
Query 181 PDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS 240
PDWVSLRRQVTVAQRKSDLRAAEDP+DAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS
Sbjct 181 PDWVSLRRQVTVAQRKSDLRAAEDPVDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS 240
Query 241 LPTDFRTAPD 250
LP DFR+APD
Sbjct 241 LPADFRSAPD 250
>gi|339293797|gb|AEJ45908.1| hypothetical protein CCDC5079_0718 [Mycobacterium tuberculosis
CCDC5079]
Length=232
Score = 454 bits (1168), Expect = 6e-126, Method: Compositional matrix adjust.
Identities = 231/232 (99%), Positives = 232/232 (100%), Gaps = 0/232 (0%)
Query 28 VGVGAARDDASVLAALRPYVVGDCLVAFDAPLVVANRTGQRPAEAALNRDFRQFEAGAYP 87
+GVGAARDDASVLAALRPYVVGDCLVAFDAPLVVANRTGQRPAEAALNRDFRQFEAGAYP
Sbjct 1 MGVGAARDDASVLAALRPYVVGDCLVAFDAPLVVANRTGQRPAEAALNRDFRQFEAGAYP 60
Query 88 ANTEKPEFADVPRAARLARQLALDMDPLSSATRRAIEVYPHPATVALFRLPRALKYKAKP 147
ANTEKPEFADVPRAARLARQLALDMDPLSSATRRAIEVYPHPATVALFRLPRALKYKAKP
Sbjct 61 ANTEKPEFADVPRAARLARQLALDMDPLSSATRRAIEVYPHPATVALFRLPRALKYKAKP 120
Query 148 GRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQPDWVSLRRQVTVAQRKSDLRAAEDPID 207
GRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQPDWVSLRRQVTVAQRKSDLRAAEDPID
Sbjct 121 GRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQPDWVSLRRQVTVAQRKSDLRAAEDPID 180
Query 208 AVVCAYVALYAQRRPADVTIYGDFTTGYIVTPSLPTDFRTAPDAGRRARARR 259
AVVCAYVALYAQRRPADVTIYGDFTTGYIVTPSLPTDFRTAPDAGRRARARR
Sbjct 181 AVVCAYVALYAQRRPADVTIYGDFTTGYIVTPSLPTDFRTAPDAGRRARARR 232
>gi|296166476|ref|ZP_06848908.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295898237|gb|EFG77811.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=248
Score = 380 bits (975), Expect = 1e-103, Method: Compositional matrix adjust.
Identities = 192/244 (79%), Positives = 207/244 (85%), Gaps = 0/244 (0%)
Query 1 MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV 60
MYF GVDLAWAGRNPTG+AAVD G LV VGAA DDA+VLAAL PYV GDCLVAFDAPLV
Sbjct 1 MYFAGVDLAWAGRNPTGIAAVDGGGRLVHVGAAGDDAAVLAALSPYVRGDCLVAFDAPLV 60
Query 61 VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR 120
V N TGQRPAEAALNRDFR+FEAGA+PANT KPEFA PRAARLAR + LDMDP S A+R
Sbjct 61 VTNPTGQRPAEAALNRDFRRFEAGAHPANTTKPEFAQGPRAARLARTMGLDMDPRSPASR 120
Query 121 RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ 180
RAIEVYPHPATV LFRL R LKYKAKPGR V+ LKSELL LMDG+E LA A V + VAG
Sbjct 121 RAIEVYPHPATVVLFRLARTLKYKAKPGRGVEQLKSELLVLMDGIEKLADAAVPLHVAGH 180
Query 181 PDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS 240
DWV LR +V+ AQRKS+LR+ EDP+DAVVCAYVALYAQRRP DVTIYGDF TGYIVTPS
Sbjct 181 EDWVRLRMRVSRAQRKSELRSVEDPVDAVVCAYVALYAQRRPTDVTIYGDFATGYIVTPS 240
Query 241 LPTD 244
LP +
Sbjct 241 LPAE 244
>gi|183984885|ref|YP_001853176.1| hypothetical protein MMAR_4917 [Mycobacterium marinum M]
gi|183178211|gb|ACC43321.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=253
Score = 370 bits (949), Expect = 1e-100, Method: Compositional matrix adjust.
Identities = 188/253 (75%), Positives = 209/253 (83%), Gaps = 0/253 (0%)
Query 1 MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV 60
MYF GVDLAWAGRNPTGVA +D+DG LV GA R+DA+VLAAL PY+ G C VAFDAPLV
Sbjct 1 MYFAGVDLAWAGRNPTGVAVLDSDGHLVCAGAVREDAAVLAALGPYLRGACRVAFDAPLV 60
Query 61 VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR 120
VAN TGQRPAE ALNRDFR+FEAGA+PANT KPEFA PRAARLA L+LD+DP S A+R
Sbjct 61 VANATGQRPAETALNRDFRKFEAGAHPANTGKPEFARGPRAARLADSLSLDIDPFSPASR 120
Query 121 RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ 180
RAIEVYPH ATVALFRLPR LKYKAKPGRSVD L+SELLRLMD VE L A V +QV G
Sbjct 121 RAIEVYPHAATVALFRLPRTLKYKAKPGRSVDRLRSELLRLMDEVEALRTAPVPLQVTGN 180
Query 181 PDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS 240
DW+SLRRQV AQRK +LR AEDP+DAVVCAYVALYA+R PAD+T+YGD T+GYI+TP+
Sbjct 181 QDWLSLRRQVVTAQRKCELRRAEDPVDAVVCAYVALYAERCPADITVYGDLTSGYILTPT 240
Query 241 LPTDFRTAPDAGR 253
LP AP A R
Sbjct 241 LPAGLTPAPTARR 253
>gi|289749286|ref|ZP_06508664.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289689873|gb|EFD57302.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length=209
Score = 367 bits (943), Expect = 6e-100, Method: Compositional matrix adjust.
Identities = 191/207 (93%), Positives = 194/207 (94%), Gaps = 2/207 (0%)
Query 1 MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV 60
MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV
Sbjct 1 MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV 60
Query 61 VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR 120
VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR
Sbjct 61 VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR 120
Query 121 RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ 180
RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ
Sbjct 121 RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ 180
Query 181 PDWVSLRRQVTVAQRKSDLRAAEDPID 207
PDWVS A + + R EDPI+
Sbjct 181 PDWVSCAAGDGRAAKTTVGR--EDPIE 205
>gi|118616330|ref|YP_904662.1| hypothetical protein MUL_0489 [Mycobacterium ulcerans Agy99]
gi|118568440|gb|ABL03191.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=253
Score = 363 bits (933), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 185/253 (74%), Positives = 207/253 (82%), Gaps = 0/253 (0%)
Query 1 MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV 60
MYF GVDLAWAGRNPTGVA +D+D LV GA R+DA+VLAAL PY+ G C VAFDAPLV
Sbjct 1 MYFAGVDLAWAGRNPTGVAVLDSDRHLVCAGAVREDATVLAALGPYLRGACRVAFDAPLV 60
Query 61 VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR 120
VAN TGQRPA+ ALNRDFR+FEAGA+P NT KPEFA PRAARLA L+LD+DP S A+R
Sbjct 61 VANATGQRPADTALNRDFRKFEAGAHPVNTGKPEFARGPRAARLADSLSLDIDPFSPASR 120
Query 121 RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ 180
RAIEVYPH ATVALFRLPR LKYKAKPGRSVD L+SELLRLMD VE L A V +QV G
Sbjct 121 RAIEVYPHAATVALFRLPRTLKYKAKPGRSVDRLRSELLRLMDEVEALRTAPVPLQVTGN 180
Query 181 PDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS 240
DW+SLRRQV AQRK +LR AEDP+DAVVCAYVALYA+R PAD+T+YGD T+GYI+TP+
Sbjct 181 QDWLSLRRQVVTAQRKCELRRAEDPVDAVVCAYVALYAERCPADITVYGDLTSGYILTPT 240
Query 241 LPTDFRTAPDAGR 253
LP AP A R
Sbjct 241 LPAGLTPAPTARR 253
>gi|240172808|ref|ZP_04751467.1| hypothetical protein MkanA1_26082 [Mycobacterium kansasii ATCC
12478]
Length=314
Score = 357 bits (917), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 178/242 (74%), Positives = 196/242 (81%), Gaps = 0/242 (0%)
Query 1 MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV 60
MYF GVDLAWAGRNPTGVA +D DG LV V A RDDA VLAALRPY G C VAFDAPLV
Sbjct 1 MYFAGVDLAWAGRNPTGVAVIDDDGVLVRVRAVRDDAEVLAALRPYTAGPCRVAFDAPLV 60
Query 61 VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR 120
V N +GQRPAE ALNRDFR FEAGAYP N +PEFAD PRAARL+ L LDMDP S+ R
Sbjct 61 VTNPSGQRPAETALNRDFRAFEAGAYPTNAGRPEFADGPRAARLSGALGLDMDPFSAGPR 120
Query 121 RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ 180
RAIEVYPH ATVALFRL R LKYKAKPGRS + LKSELLRLMDG+EGL + ++V G
Sbjct 121 RAIEVYPHAATVALFRLSRTLKYKAKPGRSAEQLKSELLRLMDGIEGLEKTSPPLRVTGH 180
Query 181 PDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS 240
DW+SLRRQV A RK +LR AEDPIDAVVCAYVA YA+RRP+D+T+YGDF TGY+VTP+
Sbjct 181 ADWLSLRRQVQAAVRKCELRRAEDPIDAVVCAYVARYAERRPSDITVYGDFATGYVVTPT 240
Query 241 LP 242
LP
Sbjct 241 LP 242
>gi|254818445|ref|ZP_05223446.1| hypothetical protein MintA_00892 [Mycobacterium intracellulare
ATCC 13950]
Length=251
Score = 338 bits (866), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 179/248 (73%), Positives = 196/248 (80%), Gaps = 0/248 (0%)
Query 1 MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV 60
MYF GVDLAWAGRNPTGVA VD+DG LV VGAARDD +LAALRPYV GDC+VAFDAPLV
Sbjct 3 MYFAGVDLAWAGRNPTGVAVVDSDGDLVSVGAARDDDEILAALRPYVWGDCVVAFDAPLV 62
Query 61 VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR 120
V N TGQRPAE ALNRDFR+FEAG +P NT KPEFA+ PR RLA L LD+DP S R
Sbjct 63 VNNPTGQRPAETALNRDFRRFEAGTHPCNTGKPEFANGPRGGRLAAALGLDLDPRSPVGR 122
Query 121 RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ 180
RA+EVYPH ATVALF L R LKYKAKPGRSVD LKSELL LMDG+E LAQA + ++VA
Sbjct 123 RAVEVYPHAATVALFGLERTLKYKAKPGRSVDRLKSELLVLMDGLERLAQAPIPLRVAAH 182
Query 181 PDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS 240
WV+LR V A RK +LR AEDP+DAVVCAYVALYAQRRPA +TIYGD +G IVTPS
Sbjct 183 EGWVALRAAVAAAHRKCELRRAEDPVDAVVCAYVALYAQRRPAGMTIYGDVDSGCIVTPS 242
Query 241 LPTDFRTA 248
LP T
Sbjct 243 LPGQICTG 250
>gi|342862180|ref|ZP_08718822.1| hypothetical protein MCOL_24941 [Mycobacterium colombiense CECT
3035]
gi|342130258|gb|EGT83578.1| hypothetical protein MCOL_24941 [Mycobacterium colombiense CECT
3035]
Length=260
Score = 316 bits (810), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 179/244 (74%), Positives = 191/244 (79%), Gaps = 0/244 (0%)
Query 1 MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV 60
MYF GVDLAWAGRNPTGVA VDA G L A RDD +LAAL PYV GDCLVAFDAPLV
Sbjct 3 MYFAGVDLAWAGRNPTGVAVVDAGGALASACAVRDDDEILAALHPYVSGDCLVAFDAPLV 62
Query 61 VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR 120
V N TGQRPAE ALNRDFR++EAG +P NT KPEFA PRA RLA L L +DP S + R
Sbjct 63 VTNPTGQRPAETALNRDFRRYEAGTHPCNTGKPEFAAGPRAGRLAAALGLALDPRSPSAR 122
Query 121 RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ 180
RAIEVYPH ATVALFRL R LKYKAKPGR+VD LKSEL LMDGVE LA+A V + VAG
Sbjct 123 RAIEVYPHAATVALFRLERTLKYKAKPGRTVDGLKSELSLLMDGVERLARAPVPLHVAGH 182
Query 181 PDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS 240
WV+LRR V AQRKS+LR AEDP+DAVVCAYVALYAQR PA VTIYGD TG IVTPS
Sbjct 183 AGWVALRRAVAAAQRKSELRRAEDPVDAVVCAYVALYAQRSPAAVTIYGDLDTGCIVTPS 242
Query 241 LPTD 244
P D
Sbjct 243 PPVD 246
>gi|118462412|ref|YP_879996.1| hypothetical protein MAV_0720 [Mycobacterium avium 104]
gi|254773659|ref|ZP_05215175.1| hypothetical protein MaviaA2_03152 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|118163699|gb|ABK64596.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=263
Score = 315 bits (808), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 180/263 (69%), Positives = 198/263 (76%), Gaps = 4/263 (1%)
Query 1 MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV 60
MYF GVDLAWAGRNPTGVA +D+ G LV V A RDD +LAAL PYV G+CLVAFDAPLV
Sbjct 1 MYFAGVDLAWAGRNPTGVAVIDSGGELVSVAAVRDDDEILAALDPYVRGECLVAFDAPLV 60
Query 61 VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR 120
V N TGQRPAE ALNRDFR+F+AG +P NT KPEFAD PRAARLA L L +DP S R
Sbjct 61 VNNPTGQRPAETALNRDFRRFQAGTHPCNTGKPEFADGPRAARLAAALGLALDPRSPRPR 120
Query 121 RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ 180
RAIEVYPH ATVALF L + LKYKAKPGRS++ LKSELL LM GVE LA A V ++V G
Sbjct 121 RAIEVYPHAATVALFGLQQTLKYKAKPGRSLERLKSELLLLMAGVERLAHAPVPVRVGGH 180
Query 181 PDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS 240
W +LRR V AQRKS+LR AEDP+DAVVCAYVAL+AQRRP VT YGD TG IVTPS
Sbjct 181 AGWRALRRAVECAQRKSELRRAEDPVDAVVCAYVALFAQRRPDAVTSYGDPGTGCIVTPS 240
Query 241 LPT----DFRTAPDAGRRARARR 259
LP R+AP A R A R
Sbjct 241 LPAARRQSLRSAPAADRSGPAPR 263
>gi|41406708|ref|NP_959544.1| hypothetical protein MAP0610c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41395058|gb|AAS02927.1| hypothetical protein MAP_0610c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336458297|gb|EGO37276.1| hypothetical protein MAPs_13980 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=263
Score = 312 bits (799), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 179/263 (69%), Positives = 197/263 (75%), Gaps = 4/263 (1%)
Query 1 MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV 60
MYF GVDLAWAGRNPTGVA +D+ G LV VGA DD +LAAL PYV G+CLVAFDAPLV
Sbjct 1 MYFAGVDLAWAGRNPTGVAVIDSAGELVSVGAVHDDDEILAALDPYVRGECLVAFDAPLV 60
Query 61 VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR 120
V N TGQRPAE ALNRDFR+F+AG +P NT KPEFAD PRAARLA L L +DP S R
Sbjct 61 VNNPTGQRPAETALNRDFRRFQAGTHPCNTGKPEFADGPRAARLAAALGLALDPRSPRPR 120
Query 121 RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ 180
RAIEVYPH ATVALF L + LKYKAKPGRS++ LKSELL LM GVE LA A V ++V
Sbjct 121 RAIEVYPHAATVALFGLQQTLKYKAKPGRSLERLKSELLLLMAGVERLAHAPVPVRVGRH 180
Query 181 PDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS 240
W +LRR V AQRKS+LR AEDP+DAVVCAYVAL+AQRRP VT YGD TG IVTPS
Sbjct 181 AGWRALRRAVECAQRKSELRRAEDPVDAVVCAYVALFAQRRPDAVTSYGDPGTGCIVTPS 240
Query 241 LPT----DFRTAPDAGRRARARR 259
LP R+AP A R A R
Sbjct 241 LPAARRQSLRSAPAADRSGPAPR 263
>gi|118471774|ref|YP_890075.1| hypothetical protein MSMEG_5849 [Mycobacterium smegmatis str.
MC2 155]
gi|118173061|gb|ABK73957.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=567
Score = 308 bits (790), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 154/244 (64%), Positives = 180/244 (74%), Gaps = 0/244 (0%)
Query 2 YFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLVV 61
YFVG+DLAW R PTGVA VD DG LV + AA DD S++AAL P+ +C+ DAPL+V
Sbjct 6 YFVGIDLAWGERKPTGVAVVDTDGRLVHLSAATDDDSIIAALAPFTGAECVAGIDAPLIV 65
Query 62 ANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATRR 121
N TG RPAEAALNRDFR FEAGA+P+NT KPEFA PR ARLA L LD+DP S RR
Sbjct 66 TNPTGNRPAEAALNRDFRPFEAGAHPSNTGKPEFAGTPRGARLAEALDLDLDPRSERPRR 125
Query 122 AIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQP 181
A+EVYPH A+VALFRL R LKYKAKPGRS + L+SELLRLM+ + GL A V + V+
Sbjct 126 ALEVYPHAASVALFRLGRTLKYKAKPGRSFEQLRSELLRLMELIAGLRHADVPLDVSASE 185
Query 182 DWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPSL 241
W L V A KS+LR AEDP+DAV+CAY+ALYA RRP D+TIYGD TGYI+TP+L
Sbjct 186 QWRQLYSAVEGASTKSELRRAEDPVDAVLCAYIALYAARRPDDITIYGDTETGYILTPTL 245
Query 242 PTDF 245
P D
Sbjct 246 PQDL 249
>gi|311743304|ref|ZP_07717111.1| RelA/SpoT domain protein [Aeromicrobium marinum DSM 15272]
gi|311313372|gb|EFQ83282.1| RelA/SpoT domain protein [Aeromicrobium marinum DSM 15272]
Length=571
Score = 288 bits (738), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 148/251 (59%), Positives = 180/251 (72%), Gaps = 1/251 (0%)
Query 1 MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV 60
M+ VG+DLAW + PTGVA +D G LV + + R DA +L A+RP+V GDCLVA DAPL+
Sbjct 1 MHLVGIDLAWGEKKPTGVAVLDPAGRLVHLSSQRRDADILEAVRPWVEGDCLVAVDAPLI 60
Query 61 VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR 120
V N TG RPAE LN DF +F+AGA+P N KPEFAD PR ARLA L LD+ P S++ R
Sbjct 61 VTNDTGNRPAERGLNADFARFDAGAHPVNRGKPEFADTPRGARLAEALGLDIHPASTSRR 120
Query 121 RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ 180
RAIEVYPHPATVALFRL R L YK KPGR++D ++++LLRL ++GLA A + +
Sbjct 121 RAIEVYPHPATVALFRLGRILAYKNKPGRTLDGMRAQLLRLTQLLDGLADARPALHL-DH 179
Query 181 PDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS 240
PDW +L VT A RKS+LR AED +DAVVCAYVA+ A + P VT YGD TGYIVTP+
Sbjct 180 PDWHALVEAVTSAGRKSELRTAEDQVDAVVCAYVAMVAAQDPGAVTTYGDADTGYIVTPT 239
Query 241 LPTDFRTAPDA 251
LP D AP A
Sbjct 240 LPADHTPAPRA 250
>gi|326333189|ref|ZP_08199436.1| RelA/SpoT-like protein [Nocardioidaceae bacterium Broad-1]
gi|325948833|gb|EGD40926.1| RelA/SpoT-like protein [Nocardioidaceae bacterium Broad-1]
Length=585
Score = 278 bits (710), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 146/249 (59%), Positives = 178/249 (72%), Gaps = 1/249 (0%)
Query 1 MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV 60
M+F+GVDLAW R PTG+A +D +G LV V AA+ D ++AAL PYV DCLVA DAPL+
Sbjct 1 MHFIGVDLAWGVRRPTGLAVLDEEGRLVHVSAAKTDDEIVAALEPYVDSDCLVAIDAPLI 60
Query 61 VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR 120
V N TG RPAEAALN+DF +F+AGA+P NT KPEF + PR AR+A +L LDM+P S R
Sbjct 61 VTNATGNRPAEAALNKDFARFDAGAHPTNTSKPEFGEQPRGARIAARLGLDMNPRSGRRR 120
Query 121 RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ 180
RAIEVYPHPATVALFRL R LKYK K GR +D L++ELL L+ G+ Q+ +
Sbjct 121 RAIEVYPHPATVALFRLGRTLKYKHKSGREIDQLRAELLVLL-GLLEGLQSSEPPLLLDD 179
Query 181 PDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS 240
P W++LR A RKS+LRA ED +DAV+CAY+ L+A R P T YGDF TGYIVTP+
Sbjct 180 PAWLALRTAAENAVRKSELRAVEDQVDAVLCAYIGLFATRAPDRTTTYGDFATGYIVTPT 239
Query 241 LPTDFRTAP 249
LP D R P
Sbjct 240 LPDDLRPTP 248
>gi|120406094|ref|YP_955923.1| RelA/SpoT domain-containing protein [Mycobacterium vanbaalenii
PYR-1]
gi|119958912|gb|ABM15917.1| RelA/SpoT domain protein [Mycobacterium vanbaalenii PYR-1]
Length=574
Score = 274 bits (700), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 149/260 (58%), Positives = 180/260 (70%), Gaps = 14/260 (5%)
Query 1 MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV 60
MYFVG+DLAW +N +G+A +DADG L+ VG A DD S+ AAL P+V +CLVA DAPL+
Sbjct 1 MYFVGLDLAWGEKNQSGLAVIDADGRLLQVGTAHDDDSIEAALAPFVADECLVAIDAPLI 60
Query 61 VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR 120
V N TG RPAE+ N+DF++FEAGA PA T++PEF PRAAR+A +L LD DP SS+ R
Sbjct 61 VKNPTGHRPAESQFNKDFQRFEAGARPAFTDRPEFKH-PRAARIAERLGLDTDPSSSSPR 119
Query 121 RAIEVYPHPATVALFRLPRALKYKAKPGRSV-DLLKSELLRLMDGVEGLAQAGVRMQVAG 179
RAIEVYPHPATV LF L + LKYK R V + + ELLRLM +EGL A R++V
Sbjct 120 RAIEVYPHPATVVLFDLEKTLKYK----RGVFEDRQRELLRLMTLIEGLDDATPRLRVNR 175
Query 180 QPDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTP 239
WV LR++V A + S L EDP+DAV+CAYV LY RP DVTIYGD +GYIVTP
Sbjct 176 SAAWVELRKRVEAATKPSHLDRDEDPVDAVLCAYVGLYWYHRPEDVTIYGDAASGYIVTP 235
Query 240 SLPTDFRTAPDAGRRARARR 259
SLP GRR RA R
Sbjct 236 SLPE--------GRRPRAAR 247
>gi|145222204|ref|YP_001132882.1| RelA/SpoT domain-containing protein [Mycobacterium gilvum PYR-GCK]
gi|145214690|gb|ABP44094.1| RelA/SpoT domain protein [Mycobacterium gilvum PYR-GCK]
Length=577
Score = 272 bits (696), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 144/242 (60%), Positives = 169/242 (70%), Gaps = 4/242 (1%)
Query 1 MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV 60
M FVG+DLAW +N TGVA VD+DG L+ VGAA DD S+ AA+ PY +CLVA DAPL+
Sbjct 1 MNFVGLDLAWGEKNQTGVAVVDSDGRLLHVGAATDDDSIAAAIAPYTAEECLVAIDAPLI 60
Query 61 VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR 120
V N TG RPAE NRDF +FEAGA PA T++PEF PRAAR+A +L LD DP S+A R
Sbjct 61 VKNATGHRPAETRFNRDFSRFEAGARPAFTDRPEFKH-PRAARIAERLGLDTDPSSAAPR 119
Query 121 RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ 180
RAIEVYPHPATV LF L R LKYK P + ELLRLM +EGL A R++V
Sbjct 120 RAIEVYPHPATVVLFDLDRTLKYKRGP---FEDRHRELLRLMTFIEGLDDATPRLRVNRS 176
Query 181 PDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS 240
WV LR++V A + S L EDP+DAV+CAYV LY RP DVTIYGD +GYI+TPS
Sbjct 177 VAWVELRKRVEAATKPSHLDRDEDPVDAVICAYVGLYWYHRPDDVTIYGDHASGYILTPS 236
Query 241 LP 242
LP
Sbjct 237 LP 238
>gi|315442643|ref|YP_004075522.1| hypothetical protein Mspyr1_09980 [Mycobacterium sp. Spyr1]
gi|315260946|gb|ADT97687.1| uncharacterized conserved protein [Mycobacterium sp. Spyr1]
Length=577
Score = 271 bits (693), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 143/242 (60%), Positives = 169/242 (70%), Gaps = 4/242 (1%)
Query 1 MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV 60
M FVG+DLAW +N TGVA VD+DG L+ VGAA DD S+ AA+ PY +CLVA DAPL+
Sbjct 1 MNFVGLDLAWGEKNQTGVAVVDSDGRLLHVGAATDDDSIAAAIAPYTAEECLVAIDAPLI 60
Query 61 VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR 120
V N TG RPAE NRDF +FEAGA PA +++PEF PRAAR+A +L LD DP S+A R
Sbjct 61 VKNATGHRPAETRFNRDFSRFEAGARPAFSDRPEFKH-PRAARIAERLGLDTDPSSAAPR 119
Query 121 RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ 180
RAIEVYPHPATV LF L R LKYK P + ELLRLM +EGL A R++V
Sbjct 120 RAIEVYPHPATVVLFDLDRTLKYKRGP---FEDRHRELLRLMTFIEGLDDATPRLRVNRS 176
Query 181 PDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS 240
WV LR++V A + S L EDP+DAV+CAYV LY RP DVTIYGD +GYI+TPS
Sbjct 177 VAWVELRKRVEAATKPSHLDRDEDPVDAVICAYVGLYWYHRPDDVTIYGDHASGYILTPS 236
Query 241 LP 242
LP
Sbjct 237 LP 238
>gi|119718837|ref|YP_925802.1| RelA/SpoT domain-containing protein [Nocardioides sp. JS614]
gi|119539498|gb|ABL84115.1| RelA/SpoT domain protein [Nocardioides sp. JS614]
Length=1046
Score = 271 bits (692), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 141/242 (59%), Positives = 164/242 (68%), Gaps = 8/242 (3%)
Query 1 MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV 60
M++VGVDLAW R P+G+A +DA+ L+ + D + A L PYV G CLVAFDAPL+
Sbjct 498 MHYVGVDLAWGERRPSGLAVLDAEARLLHIATVHSDDEIEAHLAPYVGGSCLVAFDAPLI 557
Query 61 VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR 120
V N TG RPAE AL RDFR+FEA +PANT KPEF R ARL ++L LDMDP S R
Sbjct 558 VTNATGSRPAEQALGRDFRRFEAAPHPANTSKPEFVAGSRGARLCKRLRLDMDPRSGRPR 617
Query 121 RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ 180
RAIEVYPHPAT+ LF L R LKYK K GR +DLL+SELL LM VE + VA
Sbjct 618 RAIEVYPHPATIVLFGLGRTLKYKDKRGRDLDLLRSELLVLMAHVERI--------VATD 669
Query 181 PDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS 240
W +LR QV A RKS LR ED +DAV+CAYVAL+A R P T YGDF GYIVTP+
Sbjct 670 RAWQALRTQVEEATRKSHLREVEDQVDAVICAYVALFAHRWPERTTTYGDFEQGYIVTPT 729
Query 241 LP 242
LP
Sbjct 730 LP 731
>gi|289749292|ref|ZP_06508670.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289689879|gb|EFD57308.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length=135
Score = 268 bits (685), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 135/135 (100%), Positives = 135/135 (100%), Gaps = 0/135 (0%)
Query 1 MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV 60
MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV
Sbjct 1 MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV 60
Query 61 VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR 120
VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR
Sbjct 61 VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR 120
Query 121 RAIEVYPHPATVALF 135
RAIEVYPHPATVALF
Sbjct 121 RAIEVYPHPATVALF 135
>gi|108801530|ref|YP_641727.1| hypothetical protein Mmcs_4567 [Mycobacterium sp. MCS]
gi|119870684|ref|YP_940636.1| hypothetical protein Mkms_4655 [Mycobacterium sp. KMS]
gi|108771949|gb|ABG10671.1| conserved hypothetical protein [Mycobacterium sp. MCS]
gi|119696773|gb|ABL93846.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=242
Score = 266 bits (680), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 142/241 (59%), Positives = 164/241 (69%), Gaps = 10/241 (4%)
Query 1 MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV 60
MYFVG+DLAW R+PTGVA D+DG LV + AA DA ++A L PY CL+A DAPLV
Sbjct 1 MYFVGIDLAWGERSPTGVAVADSDGSLVHLAAATTDADIVAQLMPYTAEQCLLAIDAPLV 60
Query 61 VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR 120
V N +G RP EAALNRDFR FEAG +P+NT P FA R ARLA L
Sbjct 61 VTNPSGNRPCEAALNRDFRAFEAGCHPSNTGHPWFASGSRGARLAEALGAP--------- 111
Query 121 RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ 180
A+EVYPH ATVALF LP+ LKYK KPGR V L+ ELLRL+ VE L +A + V
Sbjct 112 -AVEVYPHAATVALFGLPKTLKYKQKPGRDVAQLRGELLRLIGLVETLIRADPSLNVGQH 170
Query 181 PDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS 240
WV+LR V A RK++LR AEDP+DAVVCAYVAL+A RRPADVT YGD TG IVTP+
Sbjct 171 AGWVALRDAVRTATRKAELRRAEDPVDAVVCAYVALFATRRPADVTSYGDDATGRIVTPA 230
Query 241 L 241
L
Sbjct 231 L 231
>gi|254231091|ref|ZP_04924418.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|124600150|gb|EAY59160.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
Length=176
Score = 266 bits (679), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 139/163 (86%), Positives = 146/163 (90%), Gaps = 2/163 (1%)
Query 1 MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV 60
MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV
Sbjct 1 MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV 60
Query 61 VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR 120
VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR
Sbjct 61 VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR 120
Query 121 RAIEVYPHPAT-VALFRLPRALKYKAKPGRSVDLLKSELLRLM 162
RAIEVYPHPAT A+ PRA + + + G + + +RLM
Sbjct 121 RAIEVYPHPATGGAVSATPRA-EVQGQAGDAALTCSNRAMRLM 162
>gi|126437515|ref|YP_001073206.1| hypothetical protein Mjls_4950 [Mycobacterium sp. JLS]
gi|126237315|gb|ABO00716.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=242
Score = 266 bits (679), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 142/241 (59%), Positives = 164/241 (69%), Gaps = 10/241 (4%)
Query 1 MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV 60
MYFVG+DLAW R+PTGVA D+DG LV + AA DA ++A L PY CL+A DAPLV
Sbjct 1 MYFVGIDLAWGERSPTGVAVADSDGSLVHLAAATTDADIVAQLMPYTAEQCLLAIDAPLV 60
Query 61 VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR 120
V N +G RP EAALNRDFR FEAG +P+NT P FA R ARLA L
Sbjct 61 VTNPSGNRPCEAALNRDFRAFEAGCHPSNTGHPWFASGSRGARLAEALGAP--------- 111
Query 121 RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ 180
A+EVYPH ATVALF LP+ LKYK KPGR V L+ ELLRL+ VE L +A + V
Sbjct 112 -AVEVYPHAATVALFGLPKTLKYKQKPGRDVAQLRGELLRLIGLVETLIRADPSLNVEQH 170
Query 181 PDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS 240
WV+LR V A RK++LR AEDP+DAVVCAYVAL+A RRPADVT YGD TG IVTP+
Sbjct 171 AGWVALRDAVRTATRKAELRRAEDPVDAVVCAYVALFATRRPADVTSYGDDATGRIVTPA 230
Query 241 L 241
L
Sbjct 231 L 231
>gi|336119192|ref|YP_004573968.1| hypothetical protein MLP_35510 [Microlunatus phosphovorus NM-1]
gi|334686980|dbj|BAK36565.1| hypothetical protein MLP_35510 [Microlunatus phosphovorus NM-1]
Length=633
Score = 265 bits (676), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 130/241 (54%), Positives = 167/241 (70%), Gaps = 8/241 (3%)
Query 1 MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV 60
++F+G+DLAW + PTG+A +D D L+ V A R D ++AAL Y DCL A DAP+V
Sbjct 3 VHFIGIDLAWGDKRPTGLAVIDNDARLLEVSAVRTDDEIVAALAAYAEDDCLAAIDAPIV 62
Query 61 VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR 120
V N TG RPAE L++DFR+F+A +P+NT KPEFA+ RAAR+A++L LD+DP S R
Sbjct 63 VTNATGSRPAEQQLSKDFRRFDAATHPSNTGKPEFANGTRAARVAKRLGLDIDPRSGRRR 122
Query 121 RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ 180
RAIEVYPHPAT+ LF LP+ L+YKAKPGR +DLL+SELL LM V G+ V+ +
Sbjct 123 RAIEVYPHPATIVLFGLPKVLRYKAKPGRDLDLLRSELLSLMTLVAGV--------VSTE 174
Query 181 PDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS 240
W LR QV A RKS+LR ED +DAV+CAY+A + R T YGD TGYI+TP+
Sbjct 175 ETWAGLRHQVENATRKSELRHVEDQVDAVLCAYLAHFVHHRRDLTTCYGDLETGYIITPT 234
Query 241 L 241
L
Sbjct 235 L 235
>gi|284032478|ref|YP_003382409.1| hypothetical protein Kfla_4592 [Kribbella flavida DSM 17836]
gi|283811771|gb|ADB33610.1| conserved hypothetical protein [Kribbella flavida DSM 17836]
Length=275
Score = 219 bits (558), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 119/242 (50%), Positives = 148/242 (62%), Gaps = 0/242 (0%)
Query 1 MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV 60
M FVGVDLAW R TG+A DA G L+ R D +LA LR + G C VAFDAP++
Sbjct 1 MRFVGVDLAWGRRGVTGLAVADATGRLLDAAVRRTDDDILAWLRRWTGGPCFVAFDAPVI 60
Query 61 VANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPLSSATR 120
V N G RP E +++ F ++ A + ANT F D RA L L LD+DP S++ R
Sbjct 61 VVNPAGHRPCERLISQYFGRYGASCHAANTAGASFVDGSRAVGLVEALDLDLDPTSTSPR 120
Query 121 RAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAGQ 180
RA EVYPHPA VALF LPR L+YKAKPGR L+SE+LRL + VE LA A + V
Sbjct 121 RAAEVYPHPALVALFDLPRVLQYKAKPGRDFHHLRSEMLRLAEYVESLATAPTPLHVKTC 180
Query 181 PDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVTPS 240
W +LR + A K+DL+ ED +DAVVC Y+ALYA P +V +GD TG I+TP
Sbjct 181 DAWHNLRTGLAQATIKADLKRVEDTLDAVVCTYIALYAATNPTEVRYFGDPATGQILTPV 240
Query 241 LP 242
P
Sbjct 241 TP 242
>gi|320333670|ref|YP_004170381.1| hypothetical protein Deima_1063 [Deinococcus maricopensis DSM
21211]
gi|319754959|gb|ADV66716.1| hypothetical protein Deima_1063 [Deinococcus maricopensis DSM
21211]
Length=255
Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 103/250 (42%), Positives = 137/250 (55%), Gaps = 15/250 (6%)
Query 1 MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPLV 60
+ VG+DLAW+ RNPTGVA +DA G L+ DA +LA L + G +VA DAPL+
Sbjct 6 LRLVGIDLAWSPRNPTGVAVLDATGTLLEARTLTSDADLLAFLHAHTPGPAVVAVDAPLI 65
Query 61 VANRTGQRPAEAALNRDFRQFEAGAYPAN-TEKPEF----ADVPRAARLARQLALDMDPL 115
V N TG+R AEA L R + +F+AGA+PAN T + + R A R ++ L
Sbjct 66 VPNDTGRRDAEAELARVYARFQAGAHPANRTLLGRYGGLRGEALRDALQTRGFTVNPANL 125
Query 116 SSATRRA-IEVYPHPATVALFRLPRALKYKAK-PGRSVDLLKSELLRLMDGVEGLAQAGV 173
RA + VYPH A VALFRL R LKYKAK GR L R + LA A
Sbjct 126 DRPDVRAVVGVYPHAAMVALFRLTRTLKYKAKRQGRDAQLAAWAAYRAH--LRALAFADP 183
Query 174 RMQVAGQPDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRR-PADVTIYGDFT 232
+Q A +L + R L+ ED +DA++CAYVALYA R + + ++G+
Sbjct 184 PLQGAD-----ALLNVDPASLRGRALKTHEDTVDALLCAYVALYAHRWGESRLQVFGNVQ 238
Query 233 TGYIVTPSLP 242
GYI+TP+ P
Sbjct 239 AGYILTPAPP 248
>gi|86609079|ref|YP_477841.1| hypothetical protein CYB_1617 [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86557621|gb|ABD02578.1| conserved hypothetical protein [Synechococcus sp. JA-2-3B'a(2-13)]
Length=261
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 98/264 (38%), Positives = 134/264 (51%), Gaps = 31/264 (11%)
Query 1 MYFVGVDLAWAGRNPTGVAAV----------DADGCLVGVGAARDDASVLAALRPYVVGD 50
M +G+DLAW+ RNP+G+A + + G LV + D +L ++ D
Sbjct 1 MICIGLDLAWSPRNPSGLATLRVQLGDPGRQNLTGHLVDSRILQTDEEILDYIQAQAGED 60
Query 51 -CLVAFDAPLVVANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLA 109
CLVA DAPL V N TGQR AEA LNR FR + AGA+PAN E R L + LA
Sbjct 61 PCLVAVDAPLRVPNLTGQRRAEAELNRVFRAYAAGAHPANRRLLEKNGQVRGEALVQALA 120
Query 110 ---------LDMDPLSSATRRAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLR 160
++ L TR+ EV+PH A V+LF L R LKYKA+P R+ +
Sbjct 121 SYGFREQASIERGKL---TRQVTEVFPHSALVSLFGLSRTLKYKARPRRTWPERQQAWQL 177
Query 161 LMDGVEGLAQAGVRMQVAGQPDWVSLRRQVTVAQRKS-DLRAAEDPIDAVVCAYVALYAQ 219
+ LA A +Q G + + QV V KS L+ ED +DA++CAY+ALY
Sbjct 178 YQHHLRSLAAADPALQ--GHEELL----QVEVGSLKSRRLKNYEDQVDALMCAYIALYGF 231
Query 220 RRPAD-VTIYGDFTTGYIVTPSLP 242
R ++ +G+ G+I TP P
Sbjct 232 RWGSERCRSFGNLQEGHIFTPLPP 255
>gi|219849017|ref|YP_002463450.1| hypothetical protein Cagg_2130 [Chloroflexus aggregans DSM 9485]
gi|219543276|gb|ACL25014.1| conserved hypothetical protein [Chloroflexus aggregans DSM 9485]
Length=263
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 96/263 (37%), Positives = 135/263 (52%), Gaps = 36/263 (13%)
Query 3 FVGVDLAWAGRNPTGVAAVDADGCLVGVGAAR---------DDASVLAALRPYVVGDC-- 51
++G+DLAW+ RNP+G AA C+ A+ + +++ +R V+GD
Sbjct 11 YLGLDLAWSSRNPSGFAA-----CVGTPAGAQLVQPPNRLLTNDAIVQTIRT-VIGDAPA 64
Query 52 LVAFDAPLVVANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALD 111
++A DAPLVV N TG+R AEA L FR+++AG +PAN R L LA+D
Sbjct 65 ILAIDAPLVVPNETGRRTAEAELAAAFRRYDAGPHPANRRLLARYGGVRGEALLAALAVD 124
Query 112 MDPLSSAT------RRAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGV 165
+++ R IEV+PHPATV LFRLP L+YKA+PGR++ + EL R + +
Sbjct 125 GFVYTASIEAGMSGRFIIEVFPHPATVVLFRLPHILRYKARPGRALAERRRELGRYLSLL 184
Query 166 EGLAQAGVRMQVAGQPDWV---SLRRQVTVAQRKS-DLRAAEDPIDAVVCAYVALYAQRR 221
GL+ G P L + + Q L+A ED DA++CAY+ALY R
Sbjct 185 RGLS--------GGDPPLFGSDELWHDIDLDQLSPRSLKAVEDEADALLCAYIALYGHRW 236
Query 222 PAD-VTIYGDFTTGYIVTPSLPT 243
A YG G I TP T
Sbjct 237 GATRCRSYGTLEGGAIFTPDWST 259
>gi|86606078|ref|YP_474841.1| hypothetical protein CYA_1408 [Synechococcus sp. JA-3-3Ab]
gi|86554620|gb|ABC99578.1| conserved hypothetical protein [Synechococcus sp. JA-3-3Ab]
Length=275
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/266 (36%), Positives = 137/266 (52%), Gaps = 33/266 (12%)
Query 1 MYFVGVDLAWAGRNPTGVAAVDAD----------GCLVGVGAARDDASVLAALRPYVVGD 50
+ +G+DLAW+ RNP+GVA ++ + G L + D ++ ++ GD
Sbjct 4 LICIGLDLAWSARNPSGVATLEVESGDPQAPNLTGHLRDNRLLQTDQEIVDYIQAQAGGD 63
Query 51 -CLVAFDAPLVVANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLAR--- 106
CLVA DAPL V N +GQR AEA LNR FR + AGA+PAN R L +
Sbjct 64 PCLVAVDAPLRVPNPSGQRRAEAELNRVFRAYAAGAHPANRRLLAKNGQVRGEALVQALS 123
Query 107 ------QLALDMDPLSSATRRAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLR 160
Q +++ L+ R+ EV+PH A V+LF L R+L YKA+P R+ L + + R
Sbjct 124 RYGFREQASIEQGSLA---RQITEVFPHSAMVSLFGLSRSLPYKARPRRTW-LQREQAWR 179
Query 161 L-MDGVEGLAQAGVRMQVAGQPDWVSLRRQVTVAQ-RKSDLRAAEDPIDAVVCAYVALYA 218
L + LA A +Q G + QV V R L+ ED +DA++CAY+ALY
Sbjct 180 LYQQHLRALASADPSLQ--GHEPLL----QVEVGSLRGRQLKNYEDQVDALMCAYIALYG 233
Query 219 QRRPAD-VTIYGDFTTGYIVTPSLPT 243
R ++ +G+ G+I TP P+
Sbjct 234 FRWGSERCHSFGNLQEGHIFTPLPPS 259
>gi|163846988|ref|YP_001635032.1| hypothetical protein Caur_1415 [Chloroflexus aurantiacus J-10-fl]
gi|222524810|ref|YP_002569281.1| hypothetical protein Chy400_1537 [Chloroflexus sp. Y-400-fl]
gi|163668277|gb|ABY34643.1| conserved hypothetical protein [Chloroflexus aurantiacus J-10-fl]
gi|222448689|gb|ACM52955.1| conserved hypothetical protein [Chloroflexus sp. Y-400-fl]
Length=268
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 93/250 (38%), Positives = 129/250 (52%), Gaps = 18/250 (7%)
Query 3 FVGVDLAWAGRNPTGVAAV----DADGCLVGVGAARDDASVLAALRPYVVGDC--LVAFD 56
++G+DLAW+ RNP+G+AA +V + A ++A +R GD ++A D
Sbjct 9 YLGLDLAWSERNPSGLAAAWGTPSGAHLIVRPHHLKTTAEIVATIRA-TCGDAPAILAID 67
Query 57 APLVVANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALD---MD 113
APL+V N TG+R AEA L FRQ+ AG +PAN + R + LA D
Sbjct 68 APLLVPNETGRRLAEAELAAAFRQYHAGPHPANRQLLRRYGGLRGEEIIAALASDGFCYT 127
Query 114 PL---SSATRRAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQ 170
P R +EV+PHPAT+ LF LPR L+YKA+ GRS+ + EL R +D + L
Sbjct 128 PTIESGGGGRLIVEVFPHPATIVLFGLPRILQYKARQGRSLVSRRHELRRYLDLLGSLIH 187
Query 171 AGVRMQVAGQPDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRR-PADVTIYG 229
A + + W + T A + L+A ED DAV+CAY+ALY R A +G
Sbjct 188 ADPPL-IGVDRIWEKVDLSDTGA---TALKAIEDEADAVLCAYIALYGHRWGAARCRSFG 243
Query 230 DFTTGYIVTP 239
G I TP
Sbjct 244 TVDGGAIFTP 253
>gi|307153587|ref|YP_003888971.1| hypothetical protein Cyan7822_3760 [Cyanothece sp. PCC 7822]
gi|306983815|gb|ADN15696.1| conserved hypothetical protein [Cyanothece sp. PCC 7822]
Length=250
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/254 (34%), Positives = 134/254 (53%), Gaps = 22/254 (8%)
Query 1 MYFVGVDLAWAGRNPTGVAAVDADGC---LVGVGAARDDASVLAALRPYV--VGDCLVAF 55
M F+G+DLAW+ TGV A+ L+ + + +L + ++ L+A
Sbjct 1 MKFIGIDLAWSS-GYTGVCALIWQNNQLELLELNHFQKVHDILIWIDDFIAPTEGALIAV 59
Query 56 DAPLVVANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFA--DVPRAARLARQLALDMD 113
DAP ++ N TG R A+ ++ FR++ AG YPAN +P FA V + L ++ L
Sbjct 60 DAPTLITNHTGMRLADKLTHQYFRRYHAGCYPANLSRP-FARQTVAFGSSLEQRGFLHAP 118
Query 114 PLS--SATRRAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDG-VEGLAQ 170
++ R IEV+PHPA V LF+L R LKYK P + +SEL++L + V+ L
Sbjct 119 TITPQQVGRFQIEVFPHPAMVNLFQLERILKYKKGPLKQR---QSELIKLYNYIVKNLTH 175
Query 171 AGVRMQVAGQPDWV--SLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRR-PADVTI 227
++ + + + SL++ +T Q L+A ED +D+++CAYVA Y P I
Sbjct 176 YQPKLVLNFTFELIDTSLKQPLTGKQ----LKAIEDQLDSLICAYVAAYWWYWGPERNLI 231
Query 228 YGDFTTGYIVTPSL 241
GD +GYIV P+L
Sbjct 232 LGDGDSGYIVIPAL 245
>gi|218437319|ref|YP_002375648.1| hypothetical protein PCC7424_0312 [Cyanothece sp. PCC 7424]
gi|218170047|gb|ACK68780.1| conserved hypothetical protein [Cyanothece sp. PCC 7424]
Length=263
Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 85/256 (34%), Positives = 129/256 (51%), Gaps = 28/256 (10%)
Query 1 MYFVGVDLAWAGRNPTGVAAV---DADGCLVGVGAARDDASVLAALRPYV--VGDCLVAF 55
M F+G+DLAW+ +GV A+ + LV + A +L+ L +V L+A
Sbjct 1 MKFIGIDLAWSS-GYSGVCALVWQENQLQLVELNRLEKIAEILSWLDDFVSPCEGALIAV 59
Query 56 DAPLVVANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALD---- 111
DAP ++ N+TG R + + F ++ AG YPAN +P FA A + L+L+
Sbjct 60 DAPTLIFNQTGMRLPDKLTHHYFHRYHAGCYPANLSRP-FA----AQTVGFGLSLEQRGF 114
Query 112 -----MDPLSSATRRAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVE 166
+DP R IEV+PHPA V LF+L + LKYK GR +D K EL++L
Sbjct 115 IHAPTIDP-QQVGRYQIEVFPHPAMVNLFKLSKILKYKK--GR-LDSRKLELIKLYHYT- 169
Query 167 GLAQAGVRM-QVAGQPDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADV 225
+ Q V Q+ + L ++ + +L+ ED +D+++CAYV Y D
Sbjct 170 -VNQLTVYQPQLNLNQSFFDLGSRLQQSITGKELKEIEDKLDSLICAYVGAYWWYWGKDK 228
Query 226 T-IYGDFTTGYIVTPS 240
I GD +TGYI+ P+
Sbjct 229 NLILGDASTGYIIIPA 244
>gi|186685205|ref|YP_001868401.1| hypothetical protein Npun_R5126 [Nostoc punctiforme PCC 73102]
gi|186467657|gb|ACC83458.1| conserved hypothetical protein [Nostoc punctiforme PCC 73102]
Length=246
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 82/255 (33%), Positives = 127/255 (50%), Gaps = 28/255 (10%)
Query 1 MYFVGVDLAWAGRNPTGVAAVD-ADGCLVGVGAARDDA--SVLAALRPYVVGD--CLVAF 55
M F+G+DL W + P+G+ ++ DG L + R +A + + V D ++A
Sbjct 3 MKFIGIDLGWRSQ-PSGLCCLEWIDGQLQLLDLDRKEAIADIFTWIDRSVQPDEPAIIAV 61
Query 56 DAPLVVANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQL------- 108
DAP ++ N TG R + ++ F ++ AG YPAN P FAD R +L
Sbjct 62 DAPTLIPNPTGSRLPDKLSHKYFGKYHAGCYPANQNLP-FAD--RTINFGLELESRGFAH 118
Query 109 ALDMDPLSSATRRAIEVYPHPATVALFRLPRALKYKAK--PGRSVDLLKSELLRLMDGVE 166
A ++P +R IEV+PHPA V LF L R LKYK R ++L+K + L+D +
Sbjct 119 APTIEP-QKLSRYQIEVFPHPAIVNLFNLERILKYKKGRLSDRRLELIKLQNY-LLDILP 176
Query 167 GLAQAGVRMQVAGQPDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVT 226
+ +++ G + + +DL+A ED +D++VCAYVA Y +
Sbjct 177 SFSPPLRSLRLCGS-------FLLEIPTTGADLKATEDKLDSLVCAYVAAYWWYWGEERN 229
Query 227 -IYGDFTTGYIVTPS 240
+ GD TTGYI+ P
Sbjct 230 LVLGDRTTGYIIIPQ 244
>gi|170078853|ref|YP_001735491.1| hypothetical protein SYNPCC7002_A2257 [Synechococcus sp. PCC
7002]
gi|169886522|gb|ACB00236.1| conserved hypothetical protein [Synechococcus sp. PCC 7002]
Length=252
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 85/256 (34%), Positives = 124/256 (49%), Gaps = 29/256 (11%)
Query 1 MYFVGVDLAWAGRNPTGVAAV---DADGCLVGVGAARDDASVLAALRPYVVGDC--LVAF 55
M F+GVD W +G+ + D + D A ++ + + + LVA
Sbjct 1 MKFLGVDFGWTS-GASGLCCLEIQDQQLAIAQFDLLLDPAEIVTWVDQLLPKETMGLVAV 59
Query 56 DAPLVVANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPL 115
DAP ++ N TG R + ++ F ++ AG YPAN +P FA PR QL LD++ L
Sbjct 60 DAPTIIPNETGTRLPDRLTHKYFGKYHAGCYPANLNRP-FA--PRTT----QLGLDLEAL 112
Query 116 SSAT----------RRAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGV 165
R IEV+PHPA V LF+L R +KYK G+ D + EL RL+ +
Sbjct 113 GFGHAPEIDARKPGRYQIEVFPHPAMVRLFQLERIIKYKK--GKLGD-RRQELQRLVGLI 169
Query 166 EGLAQAGVRMQVAGQPDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRR-PAD 224
E + + Q++ W L + + A + SDL+ ED IDA+VCAYV Y A
Sbjct 170 ETVLTT-LTPQLSLNHLWDDLVQPIPTA-KGSDLKEIEDRIDALVCAYVGAYWWYWGQAK 227
Query 225 VTIYGDFTTGYIVTPS 240
GD +GYI+ P+
Sbjct 228 NQTLGDHHSGYIIVPA 243
>gi|254416587|ref|ZP_05030338.1| hypothetical protein MC7420_5191 [Microcoleus chthonoplastes
PCC 7420]
gi|196176553|gb|EDX71566.1| hypothetical protein MC7420_5191 [Microcoleus chthonoplastes
PCC 7420]
Length=246
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/264 (31%), Positives = 128/264 (49%), Gaps = 47/264 (17%)
Query 1 MYFVGVDLAWAGRNPTGVAAVD-ADGCLVGVGAARDDAS--VLAALRPYVVGD--CLVAF 55
M F+G+DL W +G+ ++ +DG L +G R A+ +L + + ++A
Sbjct 1 MKFIGIDLGWTS-GASGLCCLNWSDGQLQLLGLNRKQATADILNWIDDWTAATEPAIIAV 59
Query 56 DAPLVVANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFAD--VPRAARLARQLALDMD 113
DAP ++ N TG R + +R F ++ AG YPAN ++P FA + L + +
Sbjct 60 DAPTLIPNATGMRLPDKLSHRYFHRYHAGCYPANRQRP-FAQRTIEFGLSLEARGFIHAP 118
Query 114 PLSSAT--RRAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRL---------- 161
++ T R IEV+PHPA V LF L R LKYK GR + + ELL+L
Sbjct 119 QITPKTLGRYQIEVFPHPAIVHLFGLNRILKYKK--GRVAE-RQGELLKLYHLIREVLPS 175
Query 162 ----MDGVEGLAQAGVRMQVAGQPDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALY 217
+DG++GL S ++T A L+ ED +D+++CAY+A Y
Sbjct 176 LEPKLDGIDGLKD--------------SFSERLTGAT----LKELEDKLDSLICAYIAAY 217
Query 218 AQRRPADVT-IYGDFTTGYIVTPS 240
+ + GD +TGYI+ P+
Sbjct 218 WWYWGIERNWVLGDVSTGYIIVPA 241
>gi|119512218|ref|ZP_01631307.1| hypothetical protein N9414_08944 [Nodularia spumigena CCY9414]
gi|119463116|gb|EAW44064.1| hypothetical protein N9414_08944 [Nodularia spumigena CCY9414]
Length=265
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 80/258 (32%), Positives = 132/258 (52%), Gaps = 37/258 (14%)
Query 1 MYFVGVDLAWAGRNPTGVAAVD---ADGCLVGVGAARDDASVLAALRPYVVGD--CLVAF 55
M F+G+DL W + P+G+ ++ + ++ + A +LA + V + ++
Sbjct 1 MKFIGIDLGWKSQ-PSGLCCLELIAGELQIIDLDRIELIADILAWIDKTVEPNEPAIIGV 59
Query 56 DAPLVVANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQL------- 108
DAP ++ N G R + ++ F ++ AG YPAN + P FA+ R +L
Sbjct 60 DAPTLIPNAIGSRLPDKLTHKYFGKYHAGCYPANQKLP-FAE--RTVNFGLELESRGFDH 116
Query 109 ALDMDPLSSATRRAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGL 168
A +DP R IEV+PHPA V LF+L R LKYK GR ++ + EL++L + +
Sbjct 117 APTIDP-QKLGRYQIEVFPHPAIVNLFKLERILKYKK--GR-INERRLELIKLQNYI--- 169
Query 169 AQAGVRMQVAGQPDWVSLRRQVTVAQRKSD---LRAAEDPIDAVVCAYVA----LYAQRR 221
+ + P +LR + ++ + L+AAED +D+++CAYVA +A++R
Sbjct 170 ----LNILPTLTPSLCTLRLCRSFSEIPTTGAALKAAEDKLDSLICAYVAAHWWYWAEQR 225
Query 222 PADVTIYGDFTTGYIVTP 239
+ GD TTGYIV P
Sbjct 226 N---LVLGDRTTGYIVIP 240
>gi|16329344|ref|NP_440072.1| hypothetical protein slr1094 [Synechocystis sp. PCC 6803]
gi|1651825|dbj|BAA16752.1| slr1094 [Synechocystis sp. PCC 6803]
gi|339272437|dbj|BAK48924.1| hypothetical protein SYNGTS_0176 [Synechocystis sp. PCC 6803]
Length=261
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 78/268 (30%), Positives = 124/268 (47%), Gaps = 21/268 (7%)
Query 1 MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYV------VGD---C 51
M F+G+DL W +G+ + G +D + +L +G+
Sbjct 1 MKFIGIDLGWRS-GESGLCRLQLQSTPTGDRLGIEDLTCRLSLEEIFAWLDKGLGEAEGV 59
Query 52 LVAFDAPLVVANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALD 111
+VA DAP ++ N+TG R + ++ F ++ AG YPAN +P +L +
Sbjct 60 MVAVDAPTIIPNQTGTRLPDRLTHKYFGKYHAGCYPANLGRPFAERTTGVGKLLEERGFL 119
Query 112 MDPLSSATRRA---IEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEG- 167
P A R+ IEV+PHPA V LF+L R +KYK S+ + LL L +E
Sbjct 120 HAPEIQAQRQGRYQIEVFPHPAMVQLFQLERIIKYKKG---SLAKKRQGLLELQSYIENI 176
Query 168 LAQAGVRMQVAGQPDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVT- 226
L Q + + P R +T+ + +L+ ED D+++CAY+ Y +
Sbjct 177 LPQLTPALDLTLPPGMEPWRSPLTLNGK--ELKHQEDQWDSLICAYIGAYWWYWGRERNW 234
Query 227 IYGDFTTGYIVTPSLPTDFRTAPDAGRR 254
+ GD +TGYIV P+L D + PDA +
Sbjct 235 VLGDESTGYIVVPTLGAD-QPVPDAEKN 261
>gi|75909204|ref|YP_323500.1| hypothetical protein Ava_2995 [Anabaena variabilis ATCC 29413]
gi|75702929|gb|ABA22605.1| conserved hypothetical protein [Anabaena variabilis ATCC 29413]
Length=246
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/255 (33%), Positives = 126/255 (50%), Gaps = 31/255 (12%)
Query 1 MYFVGVDLAWAGRNPTGVAAVD-ADGCLVGVGAARDDA--SVLAALRPYVVGD--CLVAF 55
M F+G+DL W + P+G+ + +G L V R DA + + +V D ++
Sbjct 1 MKFIGIDLGWKSQ-PSGLCCLQLIEGKLEIVDLDRQDAIAHIFTWIDTWVQPDEPAIIGV 59
Query 56 DAPLVVANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQL---ALDM 112
DAP ++ N TG R + ++ F ++ AG YPAN + FA+ R +L
Sbjct 60 DAPTLIPNSTGSRLPDKLTHKYFGKYHAGCYPAN-QGLAFAE--RTINFGLELESRGFAH 116
Query 113 DPLSSAT---RRAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLA 169
P A R IEV+PHPA V LF L R LKYK GR + + EL++L + +
Sbjct 117 APTIEAQKLGRYQIEVFPHPAIVHLFSLDRILKYKK--GR-ISERRLELIKLYQYIVDIL 173
Query 170 QAGVRMQVAGQPDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVA----LYAQRRPADV 225
M+ A +SL + ++L+AAED +D+++CAYVA + ++R
Sbjct 174 PT---MEPALCVKKLSLGE---IPHTGAELKAAEDKLDSLICAYVAAHWWYWGEQRN--- 224
Query 226 TIYGDFTTGYIVTPS 240
+ GD TTGYIV P
Sbjct 225 LVLGDRTTGYIVIPK 239
>gi|113475388|ref|YP_721449.1| hypothetical protein Tery_1712 [Trichodesmium erythraeum IMS101]
gi|110166436|gb|ABG50976.1| conserved hypothetical protein [Trichodesmium erythraeum IMS101]
Length=243
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 79/259 (31%), Positives = 121/259 (47%), Gaps = 38/259 (14%)
Query 1 MYFVGVDLAW-AGRN--------PTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGDC 51
M F+G+DL W +G++ + +D D C++ + D + + L P +
Sbjct 1 MKFIGIDLGWQSGKSGLCCLQYSDNKLKILDID-CILEI---EDILNWIDNLTP-LSTPA 55
Query 52 LVAFDAPLVVANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQL--- 108
L+A DAP ++ N+TG R + ++ F ++ AG YPAN +P FA R + L
Sbjct 56 LIAVDAPTIIPNKTGTRLPDKLTHKYFGRYHAGCYPANLNRP-FAQ--RTVKFGISLEAK 112
Query 109 ----ALDMDPLSSATRRAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDG 164
A + P R IEV+PHPA V LF+L + LKYK GR D K ELL+L
Sbjct 113 EFIHAPTIKP-QKIGRFQIEVFPHPAIVNLFQLEKILKYKK--GRLAD-RKLELLKLQKY 168
Query 165 VEGLAQAGVRMQVAGQPDWVSLRRQVTVAQRKS--DLRAAEDPIDAVVCAYVALYAQRR- 221
+ + + +P V + S L+ ED +D+++CAY+ Y
Sbjct 169 I-------INILPTLEPALVISHNFLNTETINSITTLKTTEDKLDSLICAYIGAYWWYWG 221
Query 222 PADVTIYGDFTTGYIVTPS 240
+ G+ TTGYIV P
Sbjct 222 ETKNLVLGNHTTGYIVVPK 240
>gi|17228766|ref|NP_485314.1| hypothetical protein alr1271 [Nostoc sp. PCC 7120]
gi|17130618|dbj|BAB73228.1| alr1271 [Nostoc sp. PCC 7120]
Length=246
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 83/257 (33%), Positives = 124/257 (49%), Gaps = 35/257 (13%)
Query 1 MYFVGVDLAWAGRNPTGVAAVD-ADGCLVGVGAARDDA--SVLAALRPYVVGD--CLVAF 55
M F+G+DL W + P+G+ + +G L V R DA + + +V + ++
Sbjct 1 MKFIGIDLGWKSQ-PSGLCCLQLIEGKLEIVDLDRQDAIAHIFTWIDTWVQPNEPAIIGV 59
Query 56 DAPLVVANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQL---ALDM 112
DAP ++ N TG R + ++ F ++ AG YPAN + FA+ R +L
Sbjct 60 DAPTLIPNLTGSRLPDKLTHKYFGKYHAGCYPAN-QGLAFAE--RTINFGLELESRGFAH 116
Query 113 DPLSSAT---RRAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLA 169
P A R IEV+PHPA V LF L R LKYK GR + + EL++L
Sbjct 117 APTIEAQKLGRYQIEVFPHPAIVQLFSLDRILKYKK--GR-ISERRLELIKLY------- 166
Query 170 QAGVRMQVAGQPDWVSLRRQV-TVAQRKSDLRAAEDPIDAVVCAYVALY-----AQRRPA 223
Q V + +P + + + ++L+AAED +D+++CAYVA Y QR
Sbjct 167 QYIVDILPTMEPTLCVKKLSLGEIPYTGAELKAAEDKLDSLICAYVAAYWWYWGEQRN-- 224
Query 224 DVTIYGDFTTGYIVTPS 240
+ GD TTGYIV P
Sbjct 225 --LVLGDRTTGYIVIPK 239
>gi|261855902|ref|YP_003263185.1| hypothetical protein Hneap_1303 [Halothiobacillus neapolitanus
c2]
gi|261836371|gb|ACX96138.1| conserved hypothetical protein [Halothiobacillus neapolitanus
c2]
Length=246
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 76/264 (29%), Positives = 121/264 (46%), Gaps = 37/264 (14%)
Query 1 MYFVGVDLAW-AGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVG-DCL------ 52
M G+D+AW +PT +A G ++D L A++P ++G C+
Sbjct 1 MTLAGIDMAWITASHPTAIA----------FGELQNDQLTLIAIQPDLLGLSCIQNALES 50
Query 53 ------VAFDAPLVVANRTGQRPAEAALNRDFRQFEAGAYPANTEK-PEFADVPRAARLA 105
VA DAP ++ N+ G R E L R + +AG +P N ++ PE V + LA
Sbjct 51 APDLRGVAIDAPTIITNQYGARACERELARCYGGRKAGCHPTNRDRYPEADSVALSDWLA 110
Query 106 RQLALDMDPLSSATRRAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGV 165
+ AT+ IE YPHPA + +F+L YK P V + + L +
Sbjct 111 HR--RHEHACQQATKWQIECYPHPALIEIFQLAERHLYKKGP---VPARQQGQIELAQRL 165
Query 166 EGLAQA-GVRMQVAGQPDWV-SLRRQVTVAQRKSDLRAAEDPIDAVVCAYVA-LYAQRRP 222
+ LAQ+ + + VAG +W + + R L+ ED +DA++C Y+A L+A+ P
Sbjct 166 KSLAQSPKLALIVAG--EWSHHFSAEYIQSLRGRSLKQNEDVLDAIICLYIAGLFARSEP 223
Query 223 ADVTIYGDFTTGYIVTPSLPTDFR 246
++G GYI P + R
Sbjct 224 GQ--LFGSVDLGYIYVPQCHCESR 245
>gi|329895032|ref|ZP_08270797.1| hypothetical protein IMCC3088_1211 [gamma proteobacterium IMCC3088]
gi|328922528|gb|EGG29865.1| hypothetical protein IMCC3088_1211 [gamma proteobacterium IMCC3088]
Length=238
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 78/245 (32%), Positives = 112/245 (46%), Gaps = 13/245 (5%)
Query 1 MYFVGVDLAWAGRNPTGVAAV-DADGCLVGVGAARDDASVLAALRPYVVGDCL--VAFDA 57
M G D+AW N A+ + G + V R + A +V + +A DA
Sbjct 1 MRIAGFDMAWRPENNNSALAIGELVGTELNVLFCRVATQSVEAWVADIVSSSIEGIAIDA 60
Query 58 PLVVANRTGQRPAEAALNRDFRQFEAGAYPAN-TEKPEFADVPRAARLARQLALDMDPLS 116
PL++ N+ GQR EA LN+ FR +AG +P+N T P A V RAA + R +
Sbjct 61 PLIINNQEGQRGCEAQLNQVFRGAKAGCHPSNLTLYPNAASV-RAAEMLRLHGFEH---L 116
Query 117 SATRRAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQ 176
+E YPHP+ V LF L YK SV K ++L + L A V +
Sbjct 117 GTKHFMLECYPHPSMVELFGWRERLLYKRG---SVAERKQGQIQLAQAILSLQTADVSL- 172
Query 177 VAGQPDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYI 236
V P SL+ R + ++A ED +DA+VC Y+A Q A ++GD +GY+
Sbjct 173 VIEDPILKSLQADYIEDLRGAAVKANEDLLDALVCLYIAALYQTDQA-AYVFGDVESGYV 231
Query 237 VTPSL 241
P
Sbjct 232 WVPKF 236
>gi|22299687|ref|NP_682934.1| hypothetical protein tlr2144 [Thermosynechococcus elongatus BP-1]
gi|22295871|dbj|BAC09696.1| tlr2144 [Thermosynechococcus elongatus BP-1]
Length=251
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 76/267 (29%), Positives = 111/267 (42%), Gaps = 46/267 (17%)
Query 1 MYFVGVDLAWAGRNPTGVAAVDADG---CLVGVGAARDDASVLAALRPYVVGDC------ 51
M F+GVDLAW G +G + G +V + A D +LA ++ D
Sbjct 1 MRFLGVDLAWQG-GASGYCCLQWQGQDLVVVALDRACDTQELLA----WIDRDAPSAQAA 55
Query 52 LVAFDAPLVVANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALD 111
+VA DAPL++ N G R + ++ ++ AG YPAN + P + ++ Q
Sbjct 56 MVAVDAPLIIPNFRGMRSCDRQSHQVLGRYHAGCYPANQQSPFASHTTGFSQALSQRGFH 115
Query 112 MDPL---SSATRRAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGL 168
P + R IEV+PH +ALF+L + +KYK K L G+ L
Sbjct 116 HAPTIRPQQSGRFQIEVFPHATAIALFQLDQIIKYK----------KGRLTERRRGLARL 165
Query 169 AQAGVRMQVAGQPDWVSLRRQVTVAQRKS--DLRAAEDPIDAVVCAYVA----LYAQRR- 221
+ +P LR Q A + DL+ ED +DA++CAY + R
Sbjct 166 RELMTTHLCHCEP---PLRLQFPEALPTTGRDLKVLEDQLDAILCAYTGASWWYWGSDRH 222
Query 222 ---------PADVTIYGDFTTGYIVTP 239
PA T TGYIV P
Sbjct 223 WVLGSESFSPAPATTDAYLKTGYIVVP 249
>gi|345010362|ref|YP_004812716.1| hypothetical protein Strvi_2726 [Streptomyces violaceusniger
Tu 4113]
gi|344036711|gb|AEM82436.1| hypothetical protein Strvi_2726 [Streptomyces violaceusniger
Tu 4113]
Length=296
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/234 (31%), Positives = 102/234 (44%), Gaps = 25/234 (10%)
Query 3 FVGVDLAWAGR------NPTGVAAVDADGCLVGVGAARDDASVLAAL-RPYVVGDCLVAF 55
F+G+DLAWA N TGVAA+D G ++ G R ++ L R V G L
Sbjct 6 FIGIDLAWAQSGARTKPNETGVAAIDTHGVVIECGWTRGLEETMSWLARTAVDGSTLAFV 65
Query 56 DAPLVVANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFADVPRAARLARQLALDMDPL 115
DAPLVV N GQRP E + R + +++ A N P A V RL D
Sbjct 66 DAPLVVDNPAGQRPCEREVGRRYGRWKVSANSTNQSSPRRAGVLLRERLEESGWSYDDGR 125
Query 116 SSATRRAI---EVYPHPATVALFRLPRALK---YKAKPGRSVD-----LLKSELLRLMDG 164
+ E YP+ V L + YK +P R + +E RL+
Sbjct 126 GGPPTGGLVFSECYPYTTLVGAAELGYDQERPTYKRRPARVQTAQWRAVRAAECDRLIGH 185
Query 165 VEGLAQAGVRMQVAGQPDWVSLRRQVTVA---QRKSDLRAAEDPIDAVVCAYVA 215
+ GLA A ++ P + RQ+ Q+ +D + ED IDA++CA+ A
Sbjct 186 MTGLATADPPFLLSSHP----VSRQLLSEPSPQKAADYKHREDLIDALLCAWTA 235
>gi|344327288|gb|EGW38725.1| phosphoribosyl-ATP pyrophosphohydrolase domain protein [Desulfosporosinus
sp. OT]
Length=361
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/256 (25%), Positives = 111/256 (44%), Gaps = 20/256 (7%)
Query 1 MYFVGVDLAWAGRNPTGVAAVDADGCLVGVGA-ARDDASVLAALRPYVVGDCLVAFDAPL 59
M ++G+DLAW N +G+ + +G +V + D + A + + + +V DAPL
Sbjct 1 MNYIGIDLAWTYANESGICVIADNGEIVYCESKVFSDEMIAAIVEEHAQEEAIVGIDAPL 60
Query 60 VVANRTGQRPAEAALNRDFRQFEAGAYPANTEKPEFA----DVPRAARLAR-------QL 108
+V N TG R + A+ R+ + T F V R + +
Sbjct 61 IVNNETGSRYCDGAIMRE--KIHGKNLSVFTCSKRFMLNHFGVVRGEEVVKAIIKRVPDF 118
Query 109 ALDMDPLSSATRRAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGL 168
+L D L++ IE +P T+ LF +KYK K + K+E+ R+++ ++ +
Sbjct 119 SLTGD-LTNKKHVIIETFPTGITLGLFPDAFPVKYKIKHKVKFETTKTEMGRMVNLLKRV 177
Query 169 AQAGVRMQVAGQPDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIY 228
+ V D+ + + A K + + ED +DA +CAY A + V +
Sbjct 178 SD--FNPPVHNIEDFFNHSSSIQ-AMSKKEFKNLEDKLDAFLCAYAAYWLANHNGKV--F 232
Query 229 GDFTTGYIVTPSLPTD 244
GD G+I P + +
Sbjct 233 GDDQDGFITIPIIDEN 248
>gi|126668601|ref|ZP_01739554.1| hypothetical protein MELB17_15576 [Marinobacter sp. ELB17]
gi|126626931|gb|EAZ97575.1| hypothetical protein MELB17_15576 [Marinobacter sp. ELB17]
Length=243
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 72/242 (30%), Positives = 106/242 (44%), Gaps = 13/242 (5%)
Query 5 GVDLAWAG-RNPTGVAAVD-ADGCLVGVGAARDDASVLAALRPYVVGDCL--VAFDAPLV 60
GVDLAW G RNPT +A ADG + G + A D L VA D PL+
Sbjct 6 GVDLAWQGNRNPTAIAVGHVADGAIAVTGVFENLHGFDAVASALDSIDSLHGVAVDGPLI 65
Query 61 VANRTGQRPAEAALNRDFRQFEAGAYPAN-TEKPEFADVPRAARLARQLALDMDPLSSAT 119
+ N++GQRP E + + +A + N T P V L +
Sbjct 66 IRNQSGQRPCERGVAVAYAARKASCHACNLTLFPASNGVLLGDHLHAAGFGHAA--APGQ 123
Query 120 RRAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEGLAQAGVRMQVAG 179
+ +E YPHPA + +F+LP L Y K G+ D K + + + RM +
Sbjct 124 KWQLECYPHPALIEIFQLPERLLY--KKGQVAD--KRQGQARLASLLLSLAQSQRMMLTI 179
Query 180 QPDWV-SLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTIYGDFTTGYIVT 238
P ++ L Q + R + L+ ED +DA+VC Y+A Q ++ ++G GYI
Sbjct 180 GPLFLPYLDTQRIQSLRGAALKHNEDVLDAIVCLYIAALYQAGNSE-RVFGCTEQGYIYV 238
Query 239 PS 240
P
Sbjct 239 PQ 240
>gi|344330468|gb|EGW41762.1| phosphoribosyl-ATP pyrophosphohydrolase domain protein [Desulfosporosinus
sp. OT]
Length=400
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/254 (26%), Positives = 103/254 (41%), Gaps = 22/254 (8%)
Query 1 MYFVGVDLAWAGRNPTGVAAV-DADGCLVGVGAARDDASVLAALRPYVVGDCLVAFDAPL 59
M+++G+DLAW N +G+ + D + D + + Y G +V DAPL
Sbjct 40 MHYIGIDLAWTYANESGICVIADYGEIIFCESKVFSDEMIADIVAEYAQGGAIVGIDAPL 99
Query 60 VVANRTGQRPAEAALNRD------------FRQFEAGAYPANTEKPEFADVPRAARLARQ 107
+V N TG R + A+ R+ R F Y E R A
Sbjct 100 IVNNETGSRHCDGAIMREKIHGRNLSVFNCSRGFMLKHYGV-VRGEEVVKAIRKRMPAFA 158
Query 108 LALDMDPLSSATRRAIEVYPHPATVALFRLPRALKYKAKPGRSVDLLKSELLRLMDGVEG 167
L D LS+ IE +P T+ LF +KYK K + + K+E+ R++ ++
Sbjct 159 LTGD---LSNEKHVIIETFPTGITLGLFPDAFPVKYKIKHKIAFETTKTEMGRMVSLLQR 215
Query 168 LAQAGVRMQVAGQPDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVTI 227
L V ++ + + A K + ED +DA +CAY A + + V
Sbjct 216 LGD--FNPPVHNIEEFFNYSPSIQ-AMSKKGYKNLEDRLDAFLCAYAAYWLAKNKGKVI- 271
Query 228 YGDFTTGYIVTPSL 241
GD G+I P +
Sbjct 272 -GDDRDGFITIPVI 284
>gi|269925371|ref|YP_003321994.1| hypothetical protein Tter_0250 [Thermobaculum terrenum ATCC BAA-798]
gi|269789031|gb|ACZ41172.1| conserved hypothetical protein [Thermobaculum terrenum ATCC BAA-798]
Length=391
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 75/254 (30%), Positives = 113/254 (45%), Gaps = 28/254 (11%)
Query 1 MYFVGVDLAW----AGRNPTGVAAVDADGCLVGVGAARDDASVLAALRPYVVGD-CLVAF 55
M F+G+DLAW A R TG A +D G ++ D S+L + + + +VA
Sbjct 1 MRFIGIDLAWSLINADRPETGAAVIDESGNILSQANLSTDESILDFVLSNIDQEGAIVAI 60
Query 56 DAPLVVANRTGQRPAEAALNRDFRQFEAGAYPANTE--KPEFADVPRAARLARQLALD-- 111
DAP+VV N G R E AL + + YP+N + + R L +L +
Sbjct 61 DAPIVVPNLEGSRRCEIAL----QSMKIPVYPSNRSLLEKNLGGI-RGEILTHKLEIHGF 115
Query 112 --MDPLS--SATRRAIEVYPHPATVALF-RLPRALKYKAKPGRSVDLLKSELLRLMDGVE 166
D +S T+ +EVYP LF ++P KAK RSV L +L L ++
Sbjct 116 RIQDSISPGEPTKAIVEVYPRATISRLFGKVPSYKGSKAK--RSV--LAHGILHLNRLIQ 171
Query 167 GLAQAGVRMQVAGQPDWVSLRRQVTVAQRKSDLRAAEDPIDAVVCAYVALYAQRRPADVT 226
+R + D L T+ R+ L+ D +DAV+ AYV A + V
Sbjct 172 EALDPPIRWIRSPIEDPARLE---TLTPRQ--LKHIADILDAVLAAYVGYLAWKEDGRVE 226
Query 227 IYGDFTTGYIVTPS 240
+ GD G+I+ P+
Sbjct 227 VIGDVHEGFILIPT 240
Lambda K H
0.322 0.136 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 382276364284
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40