BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0789c Length=199 Score E Sequences producing significant alignments: (Bits) Value gi|15607929|ref|NP_215304.1| hypothetical protein Rv0789c [Mycob... 397 5e-109 gi|340625808|ref|YP_004744260.1| hypothetical protein MCAN_07931... 392 1e-107 gi|339293809|gb|AEJ45920.1| hypothetical protein CCDC5079_0730 [... 318 4e-85 gi|240172344|ref|ZP_04751003.1| hypothetical protein MkanA1_2371... 191 3e-47 gi|296166460|ref|ZP_06848892.1| conserved hypothetical protein [... 183 1e-44 gi|342862163|ref|ZP_08718805.1| hypothetical protein MCOL_24856 ... 181 6e-44 gi|183984864|ref|YP_001853155.1| hypothetical protein MMAR_4896 ... 174 5e-42 gi|118616258|ref|YP_904590.1| hypothetical protein MUL_0402 [Myc... 172 2e-41 gi|41406725|ref|NP_959561.1| hypothetical protein MAP0627c [Myco... 169 1e-40 gi|254818427|ref|ZP_05223428.1| hypothetical protein MintA_00802... 164 9e-39 gi|118463138|ref|YP_880012.1| hypothetical protein MAV_0737 [Myc... 159 3e-37 gi|254773675|ref|ZP_05215191.1| hypothetical protein MaviaA2_032... 159 3e-37 gi|254549759|ref|ZP_05140206.1| hypothetical protein Mtube_04736... 155 3e-36 gi|342859305|ref|ZP_08715959.1| hypothetical protein MCOL_10513 ... 92.8 2e-17 gi|152999858|ref|YP_001365539.1| PAS/PAC and GAF sensor(s)-conta... 35.0 5.7 gi|160874481|ref|YP_001553797.1| PAS/PAC and GAF sensor(s)-conta... 35.0 5.7 gi|217974179|ref|YP_002358930.1| PAS/PAC sensor-containing digua... 35.0 6.1 gi|304409445|ref|ZP_07391065.1| diguanylate cyclase/phosphodiest... 35.0 6.4 gi|126173574|ref|YP_001049723.1| diguanylate cyclase/phosphodies... 35.0 6.4 gi|297499060|gb|ADI43251.1| DNA polymerase [Elephant gammaherpes... 34.7 7.6 >gi|15607929|ref|NP_215304.1| hypothetical protein Rv0789c [Mycobacterium tuberculosis H37Rv] gi|15840205|ref|NP_335242.1| hypothetical protein MT0814 [Mycobacterium tuberculosis CDC1551] gi|31791978|ref|NP_854471.1| hypothetical protein Mb0813c [Mycobacterium bovis AF2122/97] 75 more sequence titles Length=199 Score = 397 bits (1020), Expect = 5e-109, Method: Compositional matrix adjust. Identities = 198/199 (99%), Positives = 199/199 (100%), Gaps = 0/199 (0%) Query 1 VSRRAIHSGRAAPRRSGNSHLVLRNRVPSSKDSPRRRPHHEFMTESIGEPLSTNLIERYL 60 +SRRAIHSGRAAPRRSGNSHLVLRNRVPSSKDSPRRRPHHEFMTESIGEPLSTNLIERYL Sbjct 1 MSRRAIHSGRAAPRRSGNSHLVLRNRVPSSKDSPRRRPHHEFMTESIGEPLSTNLIERYL 60 Query 61 RARGRRYFRGHHDAEFFFVANAHLRLHVHLEISPAYRDVFTIRVSPAYFFPATDHTRLAE 120 RARGRRYFRGHHDAEFFFVANAHLRLHVHLEISPAYRDVFTIRVSPAYFFPATDHTRLAE Sbjct 61 RARGRRYFRGHHDAEFFFVANAHLRLHVHLEISPAYRDVFTIRVSPAYFFPATDHTRLAE 120 Query 121 IVNAWNLQNHEVTAIVHGSSDPHRIGVAAERSLIRDRIRFDDFATFVDNAVSAATELFGQ 180 IVNAWNLQNHEVTAIVHGSSDPHRIGVAAERSLIRDRIRFDDFATFVDNAVSAATELFGQ Sbjct 121 IVNAWNLQNHEVTAIVHGSSDPHRIGVAAERSLIRDRIRFDDFATFVDNAVSAATELFGQ 180 Query 181 LTAAGLPPTATPPLLRDAG 199 LTAAGLPPTATPPLLRDAG Sbjct 181 LTAAGLPPTATPPLLRDAG 199 >gi|340625808|ref|YP_004744260.1| hypothetical protein MCAN_07931 [Mycobacterium canettii CIPT 140010059] gi|340003998|emb|CCC43133.1| hypothetical protein MCAN_07931 [Mycobacterium canettii CIPT 140010059] Length=199 Score = 392 bits (1008), Expect = 1e-107, Method: Compositional matrix adjust. Identities = 196/199 (99%), Positives = 197/199 (99%), Gaps = 0/199 (0%) Query 1 VSRRAIHSGRAAPRRSGNSHLVLRNRVPSSKDSPRRRPHHEFMTESIGEPLSTNLIERYL 60 +SRRAIHSGRA PRRSGNSHLVLRNRVPSSKDSPRRR HHEFMTESIGEPLSTNLIERYL Sbjct 1 MSRRAIHSGRATPRRSGNSHLVLRNRVPSSKDSPRRRLHHEFMTESIGEPLSTNLIERYL 60 Query 61 RARGRRYFRGHHDAEFFFVANAHLRLHVHLEISPAYRDVFTIRVSPAYFFPATDHTRLAE 120 RARGRRYFRGHHDAEFFFVANAHLRLHVHLEISPAYRDVFTIRVSPAYFFPATDHTRLAE Sbjct 61 RARGRRYFRGHHDAEFFFVANAHLRLHVHLEISPAYRDVFTIRVSPAYFFPATDHTRLAE 120 Query 121 IVNAWNLQNHEVTAIVHGSSDPHRIGVAAERSLIRDRIRFDDFATFVDNAVSAATELFGQ 180 IVNAWNLQNHEVTAIVHGSSDPHRIGVAAERSLIRDRIRFDDFATFVDNAVSAATELFGQ Sbjct 121 IVNAWNLQNHEVTAIVHGSSDPHRIGVAAERSLIRDRIRFDDFATFVDNAVSAATELFGQ 180 Query 181 LTAAGLPPTATPPLLRDAG 199 LTAAGLPPTATPPLLRDAG Sbjct 181 LTAAGLPPTATPPLLRDAG 199 >gi|339293809|gb|AEJ45920.1| hypothetical protein CCDC5079_0730 [Mycobacterium tuberculosis CCDC5079] gi|339297449|gb|AEJ49559.1| hypothetical protein CCDC5180_0722 [Mycobacterium tuberculosis CCDC5180] Length=157 Score = 318 bits (814), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 157/157 (100%), Positives = 157/157 (100%), Gaps = 0/157 (0%) Query 43 MTESIGEPLSTNLIERYLRARGRRYFRGHHDAEFFFVANAHLRLHVHLEISPAYRDVFTI 102 MTESIGEPLSTNLIERYLRARGRRYFRGHHDAEFFFVANAHLRLHVHLEISPAYRDVFTI Sbjct 1 MTESIGEPLSTNLIERYLRARGRRYFRGHHDAEFFFVANAHLRLHVHLEISPAYRDVFTI 60 Query 103 RVSPAYFFPATDHTRLAEIVNAWNLQNHEVTAIVHGSSDPHRIGVAAERSLIRDRIRFDD 162 RVSPAYFFPATDHTRLAEIVNAWNLQNHEVTAIVHGSSDPHRIGVAAERSLIRDRIRFDD Sbjct 61 RVSPAYFFPATDHTRLAEIVNAWNLQNHEVTAIVHGSSDPHRIGVAAERSLIRDRIRFDD 120 Query 163 FATFVDNAVSAATELFGQLTAAGLPPTATPPLLRDAG 199 FATFVDNAVSAATELFGQLTAAGLPPTATPPLLRDAG Sbjct 121 FATFVDNAVSAATELFGQLTAAGLPPTATPPLLRDAG 157 >gi|240172344|ref|ZP_04751003.1| hypothetical protein MkanA1_23718 [Mycobacterium kansasii ATCC 12478] Length=163 Score = 191 bits (486), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 102/160 (64%), Positives = 118/160 (74%), Gaps = 3/160 (1%) Query 43 MTES-IGEPLSTNLIERYLRARGRRYFRGHHDAEFFFVANAH-LRLHVHLEISPAYRDVF 100 MT S +GEPLSTNLIERYL +RG+RYFRG HD EFFFVANA+ RLHVHLEIS + VF Sbjct 4 MTSSPLGEPLSTNLIERYLCSRGKRYFRGRHDGEFFFVANAYPRRLHVHLEISLEHPCVF 63 Query 101 TIRVSPAYFFPATDHTRLAEIVNAWNLQNHEVTAIVHGSSDPHRIGVAAERS-LIRDRIR 159 TIRV+PAYFFPA D RLA+ + WN +NH VTAIVHGSSDP R+GV A S I +R Sbjct 64 TIRVTPAYFFPAADQARLAQFADLWNTRNHAVTAIVHGSSDPQRVGVTACNSQWIPSLVR 123 Query 160 FDDFATFVDNAVSAATELFGQLTAAGLPPTATPPLLRDAG 199 F++FA VD A+ AA +LFG+LT P T PLL DAG Sbjct 124 FNEFADTVDRALDAAVDLFGELTPVAGLPQPTEPLLLDAG 163 >gi|296166460|ref|ZP_06848892.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898221|gb|EFG77795.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=195 Score = 183 bits (464), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 105/192 (55%), Positives = 124/192 (65%), Gaps = 9/192 (4%) Query 13 PRRSGNSHLVLR---NRVPSSKDSPRRRPHHEFMTESIGEPLSTNLIERYLRARGRRYFR 69 P R+G ++ R + +S+D P H FMT EP L+ERYLR RGRRYFR Sbjct 8 PGRAGAQRILNRFFGDSWLASQDPQSHWPQHVFMTN---EPTCAKLVERYLRTRGRRYFR 64 Query 70 GHHDAEFFFVANAH-LRLHVHLEISPAYRDVFTIRVSPAYFFPATDHTRLAEIVNAWNLQ 128 GHHD E+FFV +AH RLHVHLEISPA+ DV IRV+P FFPAT+ L + WN Q Sbjct 65 GHHDGEYFFVTSAHPRRLHVHLEISPAHGDVLIIRVTPGCFFPATERPWLVHFADTWNHQ 124 Query 129 NHEVTAIVHGSSDPHRIGVAAERS-LIRDRIRFDDFATFVDNAVSAATELFGQLTAAGLP 187 + EVTAIVHGSSDP RIGV A RS IR + F+ FA FVD ++ ATELF L+ A Sbjct 125 DREVTAIVHGSSDPQRIGVVARRSHWIRQNVSFEAFAAFVDRTIADATELFDDLSPAVEL 184 Query 188 PTATPPLLRDAG 199 PTA LLRDAG Sbjct 185 PTAH-ALLRDAG 195 >gi|342862163|ref|ZP_08718805.1| hypothetical protein MCOL_24856 [Mycobacterium colombiense CECT 3035] gi|342130241|gb|EGT83561.1| hypothetical protein MCOL_24856 [Mycobacterium colombiense CECT 3035] Length=155 Score = 181 bits (459), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 91/153 (60%), Positives = 106/153 (70%), Gaps = 1/153 (0%) Query 48 GEPLSTNLIERYLRARGRRYFRGHHDAEFFFVANAHLRLHVHLEISPAYRDVFTIRVSPA 107 E L NL+ERYLR RGRRYFRGHHD E+FFV NA RLHVH EISPA+ DV IRV+P Sbjct 3 NEQLCANLVERYLRTRGRRYFRGHHDGEYFFVTNAPERLHVHFEISPAHDDVLIIRVTPG 62 Query 108 YFFPATDHTRLAEIVNAWNLQNHEVTAIVHGSSDPHRIGVAAERS-LIRDRIRFDDFATF 166 +FPA D L + WN + EVTAIVHGSSDP RIGV A +S +RD + F+DFA F Sbjct 63 SYFPAADRPWLTYFCDRWNRLDREVTAIVHGSSDPQRIGVTARKSQWVRDDVSFNDFAAF 122 Query 167 VDNAVSAATELFGQLTAAGLPPTATPPLLRDAG 199 VD V+ ATELF +L+ P+ PLLRDAG Sbjct 123 VDRTVADATELFDELSPTVELPSTERPLLRDAG 155 >gi|183984864|ref|YP_001853155.1| hypothetical protein MMAR_4896 [Mycobacterium marinum M] gi|183178190|gb|ACC43300.1| conserved hypothetical protein [Mycobacterium marinum M] Length=154 Score = 174 bits (442), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 95/156 (61%), Positives = 108/156 (70%), Gaps = 5/156 (3%) Query 47 IGEPLSTNLIERYLRARGRRYFRGHHDAEFFFVANAH-LRLHVHLEISPAYRDVFTIRVS 105 + EPL LIERYL RGRRYFRG HD EFFFV +AH RLHVHLEISPA+ +VF IRV+ Sbjct 1 MTEPLCATLIERYLCTRGRRYFRGQHDGEFFFVTDAHPQRLHVHLEISPAHPEVFAIRVA 60 Query 106 PAYFFPATDHTRLAEIVNAWNLQNHEVTAIVHGSSDPHRIGVAAERS-LIRDRIRFDDFA 164 PA FFPA D LA + WN Q VTAIVH SSDP RIGV A +S I + F +FA Sbjct 61 PACFFPAGDRALLARFADRWNTQRRGVTAIVHNSSDPQRIGVTAYKSQWIAGPVDFSEFA 120 Query 165 TFVDNAVSAATELFGQLT-AAGLPPTATPPLLRDAG 199 FVD A+ A+ ELFG+L A LP TPPL+RDAG Sbjct 121 VFVDRAIGASIELFGELNRVAELP--QTPPLMRDAG 154 >gi|118616258|ref|YP_904590.1| hypothetical protein MUL_0402 [Mycobacterium ulcerans Agy99] gi|118568368|gb|ABL03119.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99] Length=154 Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 94/156 (61%), Positives = 108/156 (70%), Gaps = 5/156 (3%) Query 47 IGEPLSTNLIERYLRARGRRYFRGHHDAEFFFVANAH-LRLHVHLEISPAYRDVFTIRVS 105 + EPL LIERYL RGRRYFRG HD EFFFV +AH RLHVHLEISPA+ +VF IRV+ Sbjct 1 MTEPLCATLIERYLCTRGRRYFRGQHDGEFFFVTDAHPQRLHVHLEISPAHPEVFAIRVA 60 Query 106 PAYFFPATDHTRLAEIVNAWNLQNHEVTAIVHGSSDPHRIGVAAERS-LIRDRIRFDDFA 164 PA FFPA D LA + WN Q VTAIVH SSDP RIGV A +S I + F +FA Sbjct 61 PACFFPAGDRALLARFADRWNTQRRGVTAIVHNSSDPQRIGVTAYKSQWIAGPVDFSEFA 120 Query 165 TFVDNAVSAATELFGQLT-AAGLPPTATPPLLRDAG 199 FVD A+ A+ ELFG+L A LP T+ PL+RDAG Sbjct 121 VFVDRAIGASIELFGELNRVAELPQTS--PLMRDAG 154 >gi|41406725|ref|NP_959561.1| hypothetical protein MAP0627c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395075|gb|AAS02944.1| hypothetical protein MAP_0627c [Mycobacterium avium subsp. paratuberculosis K-10] gi|336458313|gb|EGO37292.1| hypothetical protein MAPs_14140 [Mycobacterium avium subsp. paratuberculosis S397] Length=172 Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 90/158 (57%), Positives = 104/158 (66%), Gaps = 3/158 (1%) Query 43 MTESIGEPLSTNLIERYLRARGRRYFRGHHDAEFFFVANAHLRLHVHLEISPAYRDVFTI 102 M E NL+ERYLR RGRRYFRGHHD E+FFV A RLHVH EISPA+ DV I Sbjct 17 MFVMTNEQSCANLVERYLRTRGRRYFRGHHDGEYFFVTAAPRRLHVHFEISPAHDDVLII 76 Query 103 RVSPAYFFPATDHTRLAEIVNAWNLQNHEVTAIVHGSSDPHRIGVAAERS-LIRDRIRFD 161 RVSP Y+FPA+D L + WN VTAIVHGSSDP RIGV A +S IR+ + F Sbjct 77 RVSPGYYFPASDRPWLTHFSDRWNRLGRRVTAIVHGSSDPQRIGVTARKSQWIRNGVGFT 136 Query 162 DFATFVDNAVSAATELFGQLTAAGLPPTATPPLLRDAG 199 DFA F+D ++ AT+LF +L A P A PLLRDAG Sbjct 137 DFAAFLDETIADATQLFEELNPAA--PPAHVPLLRDAG 172 >gi|254818427|ref|ZP_05223428.1| hypothetical protein MintA_00802 [Mycobacterium intracellulare ATCC 13950] Length=155 Score = 164 bits (414), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 87/153 (57%), Positives = 103/153 (68%), Gaps = 3/153 (1%) Query 49 EPLSTNLIERYLRARGRRYFRGHHDAEFFFVANAHLRLHVHLEISPAYRDVFTIRVSPAY 108 E + NL+ERYLR RGR+YFRGH D E FFV A RLHVH EISPA+ DV IRV+P Sbjct 4 EQMCANLVERYLRTRGRQYFRGHRDGEHFFVTGAPRRLHVHFEISPAHDDVLIIRVTPGC 63 Query 109 FFPATDHTRLAEIVNAWNLQNHEVTAIVHGSSDPHRIGVAAERS-LIRDRIRFDDFATFV 167 +FPA D L + WN Q+ VTAIVHGS DP RIGV A +S IR ++ F +FA+ V Sbjct 64 YFPAADRPWLTHFADTWNRQDRHVTAIVHGSCDPQRIGVVARKSQWIRSKVSFAEFASLV 123 Query 168 DNAVSAATELFGQLT-AAGLPPTATPPLLRDAG 199 D ++ ATELF +L AAGLPP A LLR AG Sbjct 124 DLTIADATELFEELDPAAGLPP-AERSLLRHAG 155 >gi|118463138|ref|YP_880012.1| hypothetical protein MAV_0737 [Mycobacterium avium 104] gi|118164425|gb|ABK65322.1| conserved hypothetical protein [Mycobacterium avium 104] Length=168 Score = 159 bits (401), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 88/152 (58%), Positives = 102/152 (68%), Gaps = 3/152 (1%) Query 49 EPLSTNLIERYLRARGRRYFRGHHDAEFFFVANAHLRLHVHLEISPAYRDVFTIRVSPAY 108 E NL+ERYLR RGRRYFRGHHD E+FFV A RLHVH EISPA+ DV IRVSP Sbjct 19 EQSCANLVERYLRTRGRRYFRGHHDGEYFFVTAAPRRLHVHFEISPAHDDVLIIRVSPGC 78 Query 109 FFPATDHTRLAEIVNAWNLQNHEVTAIVHGSSDPHRIGVAAERS-LIRDRIRFDDFATFV 167 +FPA+D L + WN VTAIVHGSSDP RIGV A +S IR+ + F DFA F+ Sbjct 79 YFPASDRPWLTHFSDRWNRLGRRVTAIVHGSSDPQRIGVTARKSQWIRNGVGFTDFAAFL 138 Query 168 DNAVSAATELFGQLTAAGLPPTATPPLLRDAG 199 D ++ AT+LF +L A P A PLLRDAG Sbjct 139 DETIADATQLFEELNPA--APPAHAPLLRDAG 168 >gi|254773675|ref|ZP_05215191.1| hypothetical protein MaviaA2_03232 [Mycobacterium avium subsp. avium ATCC 25291] Length=172 Score = 159 bits (401), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 88/152 (58%), Positives = 102/152 (68%), Gaps = 3/152 (1%) Query 49 EPLSTNLIERYLRARGRRYFRGHHDAEFFFVANAHLRLHVHLEISPAYRDVFTIRVSPAY 108 E NL+ERYLR RGRRYFRGHHD E+FFV A RLHVH EISPA+ DV IRVSP Sbjct 23 EQSCANLVERYLRTRGRRYFRGHHDGEYFFVTAAPRRLHVHFEISPAHDDVLIIRVSPGC 82 Query 109 FFPATDHTRLAEIVNAWNLQNHEVTAIVHGSSDPHRIGVAAERS-LIRDRIRFDDFATFV 167 +FPA+D L + WN VTAIVHGSSDP RIGV A +S IR+ + F DFA F+ Sbjct 83 YFPASDRPWLTHFSDRWNRLGRRVTAIVHGSSDPQRIGVTARKSQWIRNGVGFTDFAAFL 142 Query 168 DNAVSAATELFGQLTAAGLPPTATPPLLRDAG 199 D ++ AT+LF +L A P A PLLRDAG Sbjct 143 DETIADATQLFEELNPA--APPAHAPLLRDAG 172 >gi|254549759|ref|ZP_05140206.1| hypothetical protein Mtube_04736 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] Length=98 Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 75/77 (98%), Positives = 76/77 (99%), Gaps = 0/77 (0%) Query 43 MTESIGEPLSTNLIERYLRARGRRYFRGHHDAEFFFVANAHLRLHVHLEISPAYRDVFTI 102 MTESIGEPLSTNLIERYLRARGRRYFRGHHDAEFFFVANAHLRLHVHLEISPAYRDVFTI Sbjct 1 MTESIGEPLSTNLIERYLRARGRRYFRGHHDAEFFFVANAHLRLHVHLEISPAYRDVFTI 60 Query 103 RVSPAYFFPATDHTRLA 119 RVSPAYFFPATDHTR+ Sbjct 61 RVSPAYFFPATDHTRVG 77 >gi|342859305|ref|ZP_08715959.1| hypothetical protein MCOL_10513 [Mycobacterium colombiense CECT 3035] gi|342133546|gb|EGT86749.1| hypothetical protein MCOL_10513 [Mycobacterium colombiense CECT 3035] Length=158 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 51/144 (36%), Positives = 78/144 (55%), Gaps = 2/144 (1%) Query 49 EPLSTNLIERYLRARGRRYFRGHHDAEFFFVANAHL-RLHVHLEISPAYRDVFTIRVSPA 107 EPL+T LIER L++R R+FR EF ++N RLH+ + I RD+ I +SPA Sbjct 4 EPLTTELIERCLQSRRLRFFRSDDGEEFLLLSNYERGRLHITVRIDGVRRDLLEISISPA 63 Query 108 YFFPATDHTRLAEIVNAWNLQNHEVTAIVHGSSDPHRIGVAAERS-LIRDRIRFDDFATF 166 ++PA + RL E+VN WN H A V ++ P + V E + L+ D I + + Sbjct 64 GYYPAAERPRLMELVNDWNRDTHWPKAFVRDTARPSHVSVVGENAYLLSDGIHLEALGSL 123 Query 167 VDNAVSAATELFGQLTAAGLPPTA 190 + +AV +LF ++ A P+A Sbjct 124 IKSAVEYGRDLFTKIEQAVSLPSA 147 >gi|152999858|ref|YP_001365539.1| PAS/PAC and GAF sensor(s)-containing diguanylate cyclase/phosphodiesterase [Shewanella baltica OS185] gi|151364476|gb|ABS07476.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella baltica OS185] Length=1015 Score = 35.0 bits (79), Expect = 5.7, Method: Composition-based stats. Identities = 27/95 (29%), Positives = 44/95 (47%), Gaps = 6/95 (6%) Query 104 VSPAYFFPATDHTRLAEIVNAWNLQNHEVTAIVHGSSDPHRIGVAAERSLIRDRIRFDDF 163 VSPA F P + T L + W + A ++ H +GV + S+ + I+F D Sbjct 802 VSPAEFIPVAEDTGLIVEIGNWVFEQ----AARQSAAWRHELGVEIQISVNKSPIQFRDE 857 Query 164 ATFVDNAVSAATELFGQLTAAGLPPTATPPLLRDA 198 T +++ + +L +T AG+ T LL DA Sbjct 858 GTLLNDWLKLLQDL--NITGAGVCVEITEGLLLDA 890 >gi|160874481|ref|YP_001553797.1| PAS/PAC and GAF sensor(s)-containing diguanylate cyclase/phosphodiesterase [Shewanella baltica OS195] gi|160860003|gb|ABX48537.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica OS195] gi|315266718|gb|ADT93571.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica OS678] Length=1015 Score = 35.0 bits (79), Expect = 5.7, Method: Composition-based stats. Identities = 27/95 (29%), Positives = 44/95 (47%), Gaps = 6/95 (6%) Query 104 VSPAYFFPATDHTRLAEIVNAWNLQNHEVTAIVHGSSDPHRIGVAAERSLIRDRIRFDDF 163 VSPA F P + T L + W + A ++ H +GV + S+ + I+F D Sbjct 802 VSPAEFIPVAEDTGLIVEIGNWVFEQ----AARQSAAWRHELGVEIQISVNKSPIQFRDE 857 Query 164 ATFVDNAVSAATELFGQLTAAGLPPTATPPLLRDA 198 T +++ + +L +T AG+ T LL DA Sbjct 858 GTLLNDWLKLLQDL--NITGAGVCVEITEGLLLDA 890 >gi|217974179|ref|YP_002358930.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Shewanella baltica OS223] gi|217499314|gb|ACK47507.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica OS223] Length=1015 Score = 35.0 bits (79), Expect = 6.1, Method: Composition-based stats. Identities = 27/95 (29%), Positives = 44/95 (47%), Gaps = 6/95 (6%) Query 104 VSPAYFFPATDHTRLAEIVNAWNLQNHEVTAIVHGSSDPHRIGVAAERSLIRDRIRFDDF 163 VSPA F P + T L + W + A ++ H +GV + S+ + I+F D Sbjct 802 VSPAEFIPVAEDTGLIVEIGNWVFEQ----AARQSAAWRHELGVEIQISVNKSPIQFRDE 857 Query 164 ATFVDNAVSAATELFGQLTAAGLPPTATPPLLRDA 198 T +++ + +L +T AG+ T LL DA Sbjct 858 GTLLNDWLKLLQDL--NITGAGVCVEITEGLLLDA 890 >gi|304409445|ref|ZP_07391065.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica OS183] gi|304351963|gb|EFM16361.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica OS183] gi|333819573|gb|AEG12239.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica BA175] Length=1015 Score = 35.0 bits (79), Expect = 6.4, Method: Composition-based stats. Identities = 27/95 (29%), Positives = 44/95 (47%), Gaps = 6/95 (6%) Query 104 VSPAYFFPATDHTRLAEIVNAWNLQNHEVTAIVHGSSDPHRIGVAAERSLIRDRIRFDDF 163 VSPA F P + T L + W + A ++ H +GV + S+ + I+F D Sbjct 802 VSPAEFIPVAEDTGLIVEIGNWVFEQ----AARQSAAWRHELGVEIQISVNKSPIQFRDE 857 Query 164 ATFVDNAVSAATELFGQLTAAGLPPTATPPLLRDA 198 T +++ + +L +T AG+ T LL DA Sbjct 858 GTLLNDWLKLLQDL--NITGAGVCVEITEGLLLDA 890 >gi|126173574|ref|YP_001049723.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella baltica OS155] gi|125996779|gb|ABN60854.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica OS155] gi|334862731|gb|AEH13202.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica OS117] Length=1015 Score = 35.0 bits (79), Expect = 6.4, Method: Composition-based stats. Identities = 27/95 (29%), Positives = 44/95 (47%), Gaps = 6/95 (6%) Query 104 VSPAYFFPATDHTRLAEIVNAWNLQNHEVTAIVHGSSDPHRIGVAAERSLIRDRIRFDDF 163 VSPA F P + T L + W + A ++ H +GV + S+ + I+F D Sbjct 802 VSPAEFIPVAEDTGLIVEIGNWVFEQ----AARQSAAWRHELGVEIQISVNKSPIQFRDE 857 Query 164 ATFVDNAVSAATELFGQLTAAGLPPTATPPLLRDA 198 T +++ + +L +T AG+ T LL DA Sbjct 858 GTLLNDWLKLLQDL--NITGAGVCVEITEGLLLDA 890 >gi|297499060|gb|ADI43251.1| DNA polymerase [Elephant gammaherpesvirus 5] Length=152 Score = 34.7 bits (78), Expect = 7.6, Method: Compositional matrix adjust. Identities = 18/72 (25%), Positives = 34/72 (48%), Gaps = 1/72 (1%) Query 83 HLRLHVHLEISPAYRDVFTIRVSPAYFFPA-TDHTRLAEIVNAWNLQNHEVTAIVHGSSD 141 H LH+H ++P + F I P +F H+ L++++ AW + E+ + SD Sbjct 10 HNELHLHSHLTPNDYETFIISSGPVHFVKKHITHSLLSQLLTAWLSKRKEIRKQLSSCSD 69 Query 142 PHRIGVAAERSL 153 P + ++ L Sbjct 70 PQLKTILDKQQL 81 Lambda K H 0.324 0.136 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 215040480604 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40