BLAST Search Results


BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0804

Length=209
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15607944|ref|NP_215319.1|  hypothetical protein Rv0804 [Mycoba...   385    1e-105
gi|289442207|ref|ZP_06431951.1|  conserved hypothetical protein [...   385    2e-105
gi|340625819|ref|YP_004744271.1|  hypothetical protein MCAN_08051...   379    2e-103
gi|167967717|ref|ZP_02549994.1|  hypothetical protein MtubH3_0664...   372    3e-101
gi|289568757|ref|ZP_06448984.1|  LOW QUALITY PROTEIN: conserved h...   244    8e-63 
gi|183984855|ref|YP_001853146.1|  hypothetical protein MMAR_4887 ...   243    1e-62 
gi|118616265|ref|YP_904597.1|  hypothetical protein MUL_0411 [Myc...   235    2e-60 
gi|240172685|ref|ZP_04751344.1|  hypothetical protein MkanA1_2544...   231    6e-59 
gi|342860279|ref|ZP_08716930.1|  caax amino protease [Mycobacteri...   214    4e-54 
gi|296166438|ref|ZP_06848870.1|  caax amino protease [Mycobacteri...   207    6e-52 
gi|118462318|ref|YP_880020.1|  caax amino protease [Mycobacterium...   203    1e-50 
gi|326904976|gb|EGE51909.1|  hypothetical protein TBPG_02900 [Myc...   195    4e-48 
gi|108801507|ref|YP_641704.1|  abortive infection protein [Mycoba...   190    1e-46 
gi|41406734|ref|NP_959570.1|  hypothetical protein MAP0636 [Mycob...   187    6e-46 
gi|254821048|ref|ZP_05226049.1|  caax amino protease family prote...   187    9e-46 
gi|120406065|ref|YP_955894.1|  abortive infection protein [Mycoba...   182    3e-44 
gi|118473845|ref|YP_890050.1|  caax amino protease [Mycobacterium...   180    1e-43 
gi|145222224|ref|YP_001132902.1|  abortive infection protein [Myc...   161    5e-38 
gi|169627810|ref|YP_001701459.1|  hypothetical protein MAB_0709 [...   144    1e-32 
gi|254773686|ref|ZP_05215202.1|  caax amino protease family prote...   117    1e-24 
gi|333918369|ref|YP_004491950.1|  abortive infection protein [Amy...   100    2e-19 
gi|229488497|ref|ZP_04382363.1|  abortive infection protein [Rhod...  94.0    1e-17 
gi|226364331|ref|YP_002782113.1|  hypothetical protein ROP_49210 ...  84.7    8e-15 
gi|226308317|ref|YP_002768277.1|  hypothetical protein RER_48300 ...  84.3    9e-15 
gi|111021808|ref|YP_704780.1|  protease [Rhodococcus jostii RHA1]...  80.9    1e-13 
gi|54022542|ref|YP_116784.1|  hypothetical protein nfa5750 [Nocar...  70.1    2e-10 
gi|325674782|ref|ZP_08154469.1|  caax amino protease [Rhodococcus...  65.5    5e-09 
gi|296139909|ref|YP_003647152.1|  hypothetical protein Tpau_2204 ...  63.9    1e-08 
gi|312138301|ref|YP_004005637.1|  integral membrane protein [Rhod...  63.2    3e-08 
gi|15609000|ref|NP_216379.1|  integral membrane protein [Mycobact...  61.2    9e-08 
gi|289753956|ref|ZP_06513334.1|  integral membrane protein [Mycob...  61.2    9e-08 
gi|339294799|gb|AEJ46910.1|  integral membrane protein [Mycobacte...  61.2    9e-08 
gi|308231962|ref|ZP_07663961.1|  conserved membrane protein [Myco...  61.2    9e-08 
gi|289762012|ref|ZP_06521390.1|  conserved integral membrane prot...  60.5    2e-07 
gi|108799760|ref|YP_639957.1|  abortive infection protein [Mycoba...  60.5    2e-07 
gi|126435401|ref|YP_001071092.1|  abortive infection protein [Myc...  60.1    2e-07 
gi|183982746|ref|YP_001851037.1|  hypothetical protein MMAR_2740 ...  57.4    1e-06 
gi|333990591|ref|YP_004523205.1|  hypothetical protein JDM601_195...  57.0    2e-06 
gi|296164854|ref|ZP_06847411.1|  abortive infection protein [Myco...  57.0    2e-06 
gi|240173353|ref|ZP_04752011.1|  hypothetical protein MkanA1_2883...  56.6    2e-06 
gi|169627601|ref|YP_001701250.1|  hypothetical protein MAB_0497 [...  56.2    3e-06 
gi|342861240|ref|ZP_08717888.1|  hypothetical protein MCOL_20251 ...  54.7    8e-06 
gi|118464072|ref|YP_882042.1|  caax amino protease [Mycobacterium...  53.1    3e-05 
gi|336457508|gb|EGO36514.1|  CAAX amino terminal protease family ...  53.1    3e-05 
gi|118473489|ref|YP_887915.1|  integral membrane protein [Mycobac...  50.8    1e-04 
gi|319949528|ref|ZP_08023578.1|  hypothetical protein ES5_08761 [...  50.8    1e-04 
gi|343928507|ref|ZP_08767955.1|  hypothetical protein GOALK_117_0...  50.4    2e-04 
gi|41407670|ref|NP_960506.1|  hypothetical protein MAP1572c [Myco...  50.1    2e-04 
gi|145223928|ref|YP_001134606.1|  abortive infection protein [Myc...  49.7    3e-04 
gi|120404049|ref|YP_953878.1|  abortive infection protein [Mycoba...  49.7    3e-04 


>gi|15607944|ref|NP_215319.1| hypothetical protein Rv0804 [Mycobacterium tuberculosis H37Rv]
 gi|15840215|ref|NP_335252.1| hypothetical protein MT0824 [Mycobacterium tuberculosis CDC1551]
 gi|31791992|ref|NP_854485.1| hypothetical protein Mb0827 [Mycobacterium bovis AF2122/97]
 66 more sequence titles
 gi|121636728|ref|YP_976951.1| hypothetical protein BCG_0856 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|148660582|ref|YP_001282105.1| hypothetical protein MRA_0814 [Mycobacterium tuberculosis H37Ra]
 gi|148822010|ref|YP_001286764.1| hypothetical protein TBFG_10819 [Mycobacterium tuberculosis F11]
 gi|224989199|ref|YP_002643886.1| hypothetical protein JTY_0826 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253797751|ref|YP_003030752.1| hypothetical protein TBMG_00818 [Mycobacterium tuberculosis KZN 
1435]
 gi|254231117|ref|ZP_04924444.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|254363743|ref|ZP_04979789.1| conserved hypothetical protein [Mycobacterium tuberculosis str. 
Haarlem]
 gi|254549775|ref|ZP_05140222.1| hypothetical protein Mtube_04816 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|289446368|ref|ZP_06436112.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289553061|ref|ZP_06442271.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
 gi|289573422|ref|ZP_06453649.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289744528|ref|ZP_06503906.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289752853|ref|ZP_06512231.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289756891|ref|ZP_06516269.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289760933|ref|ZP_06520311.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|294996284|ref|ZP_06801975.1| hypothetical protein Mtub2_17706 [Mycobacterium tuberculosis 
210]
 gi|297633315|ref|ZP_06951095.1| hypothetical protein MtubK4_04291 [Mycobacterium tuberculosis 
KZN 4207]
 gi|297730299|ref|ZP_06959417.1| hypothetical protein MtubKR_04366 [Mycobacterium tuberculosis 
KZN R506]
 gi|298524294|ref|ZP_07011703.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|306774925|ref|ZP_07413262.1| hypothetical protein TMAG_03955 [Mycobacterium tuberculosis SUMu001]
 gi|306781343|ref|ZP_07419680.1| hypothetical protein TMBG_03279 [Mycobacterium tuberculosis SUMu002]
 gi|306783466|ref|ZP_07421788.1| hypothetical protein TMCG_04004 [Mycobacterium tuberculosis SUMu003]
 gi|306790340|ref|ZP_07428662.1| hypothetical protein TMDG_03373 [Mycobacterium tuberculosis SUMu004]
 gi|306794834|ref|ZP_07433136.1| hypothetical protein TMEG_02405 [Mycobacterium tuberculosis SUMu005]
 gi|306796571|ref|ZP_07434873.1| hypothetical protein TMFG_03967 [Mycobacterium tuberculosis SUMu006]
 gi|306802430|ref|ZP_07439098.1| hypothetical protein TMHG_03836 [Mycobacterium tuberculosis SUMu008]
 gi|306806638|ref|ZP_07443306.1| hypothetical protein TMGG_04007 [Mycobacterium tuberculosis SUMu007]
 gi|306966836|ref|ZP_07479497.1| hypothetical protein TMIG_04003 [Mycobacterium tuberculosis SUMu009]
 gi|306971029|ref|ZP_07483690.1| hypothetical protein TMJG_04023 [Mycobacterium tuberculosis SUMu010]
 gi|313657624|ref|ZP_07814504.1| hypothetical protein MtubKV_04346 [Mycobacterium tuberculosis 
KZN V2475]
 gi|339630870|ref|YP_004722512.1| hypothetical protein MAF_08140 [Mycobacterium africanum GM041182]
 gi|2117278|emb|CAB09107.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|13880371|gb|AAK45066.1| hypothetical protein MT0824 [Mycobacterium tuberculosis CDC1551]
 gi|31617579|emb|CAD93689.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121492375|emb|CAL70842.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|124600176|gb|EAY59186.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|134149257|gb|EBA41302.1| conserved hypothetical protein [Mycobacterium tuberculosis str. 
Haarlem]
 gi|148504734|gb|ABQ72543.1| hypothetical protein MRA_0814 [Mycobacterium tuberculosis H37Ra]
 gi|148720537|gb|ABR05162.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
 gi|224772312|dbj|BAH25118.1| hypothetical protein JTY_0826 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253319254|gb|ACT23857.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
1435]
 gi|289419326|gb|EFD16527.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289437693|gb|EFD20186.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
 gi|289537853|gb|EFD42431.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289685056|gb|EFD52544.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289693440|gb|EFD60869.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289708439|gb|EFD72455.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|289712455|gb|EFD76467.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298494088|gb|EFI29382.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308216518|gb|EFO75917.1| hypothetical protein TMAG_03955 [Mycobacterium tuberculosis SUMu001]
 gi|308325871|gb|EFP14722.1| hypothetical protein TMBG_03279 [Mycobacterium tuberculosis SUMu002]
 gi|308331729|gb|EFP20580.1| hypothetical protein TMCG_04004 [Mycobacterium tuberculosis SUMu003]
 gi|308333233|gb|EFP22084.1| hypothetical protein TMDG_03373 [Mycobacterium tuberculosis SUMu004]
 gi|308336887|gb|EFP25738.1| hypothetical protein TMEG_02405 [Mycobacterium tuberculosis SUMu005]
 gi|308342999|gb|EFP31850.1| hypothetical protein TMFG_03967 [Mycobacterium tuberculosis SUMu006]
 gi|308346885|gb|EFP35736.1| hypothetical protein TMGG_04007 [Mycobacterium tuberculosis SUMu007]
 gi|308350826|gb|EFP39677.1| hypothetical protein TMHG_03836 [Mycobacterium tuberculosis SUMu008]
 gi|308355461|gb|EFP44312.1| hypothetical protein TMIG_04003 [Mycobacterium tuberculosis SUMu009]
 gi|308359415|gb|EFP48266.1| hypothetical protein TMJG_04023 [Mycobacterium tuberculosis SUMu010]
 gi|323720764|gb|EGB29835.1| hypothetical protein TMMG_03860 [Mycobacterium tuberculosis CDC1551A]
 gi|328457530|gb|AEB02953.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
4207]
 gi|339293822|gb|AEJ45933.1| hypothetical protein CCDC5079_0743 [Mycobacterium tuberculosis 
CCDC5079]
 gi|339297463|gb|AEJ49573.1| hypothetical protein CCDC5180_0736 [Mycobacterium tuberculosis 
CCDC5180]
 gi|339330226|emb|CCC25886.1| conserved hypothetical protein [Mycobacterium africanum GM041182]
 gi|341600744|emb|CCC63414.1| conserved hypothetical protein [Mycobacterium bovis BCG str. 
Moreau RDJ]
 gi|344218629|gb|AEM99259.1| hypothetical protein MTCTRI2_0821 [Mycobacterium tuberculosis 
CTRI-2]
Length=209

 Score =  385 bits (990),  Expect = 1e-105, Method: Compositional matrix adjust.
 Identities = 209/209 (100%), Positives = 209/209 (100%), Gaps = 0/209 (0%)

Query  1    MSRLRALSLAAGLVGWSLVSPRLPAPWRIPLQAGLGSVLVLVTRATMGLWPPRLWAGLRL  60
            MSRLRALSLAAGLVGWSLVSPRLPAPWRIPLQAGLGSVLVLVTRATMGLWPPRLWAGLRL
Sbjct  1    MSRLRALSLAAGLVGWSLVSPRLPAPWRIPLQAGLGSVLVLVTRATMGLWPPRLWAGLRL  60

Query  61   GWAAGAAAATAIAATTPVPMVRLSMSARELPASVPVWLVWHIPGGTVWAEEAAFRGALAT  120
            GWAAGAAAATAIAATTPVPMVRLSMSARELPASVPVWLVWHIPGGTVWAEEAAFRGALAT
Sbjct  61   GWAAGAAAATAIAATTPVPMVRLSMSARELPASVPVWLVWHIPGGTVWAEEAAFRGALAT  120

Query  121  IGARAFGRSGGRILQAGAFGLSHIADARATGEPLVLTVLATGIAGWMFGWLADRSGSLAA  180
            IGARAFGRSGGRILQAGAFGLSHIADARATGEPLVLTVLATGIAGWMFGWLADRSGSLAA
Sbjct  121  IGARAFGRSGGRILQAGAFGLSHIADARATGEPLVLTVLATGIAGWMFGWLADRSGSLAA  180

Query  181  PLLTHLAINEAGAVAAVLVQRRSGISTRL  209
            PLLTHLAINEAGAVAAVLVQRRSGISTRL
Sbjct  181  PLLTHLAINEAGAVAAVLVQRRSGISTRL  209


>gi|289442207|ref|ZP_06431951.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289749319|ref|ZP_06508697.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289415126|gb|EFD12366.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289689906|gb|EFD57335.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length=209

 Score =  385 bits (989),  Expect = 2e-105, Method: Compositional matrix adjust.
 Identities = 208/209 (99%), Positives = 209/209 (100%), Gaps = 0/209 (0%)

Query  1    MSRLRALSLAAGLVGWSLVSPRLPAPWRIPLQAGLGSVLVLVTRATMGLWPPRLWAGLRL  60
            MSRLRALSLAAGLVGWSLVSPRLPAPWRIPLQAGLGSVLVLVTRATMGLWPPRLWAGLRL
Sbjct  1    MSRLRALSLAAGLVGWSLVSPRLPAPWRIPLQAGLGSVLVLVTRATMGLWPPRLWAGLRL  60

Query  61   GWAAGAAAATAIAATTPVPMVRLSMSARELPASVPVWLVWHIPGGTVWAEEAAFRGALAT  120
            GWAAGAAAATAIAATTPVPMVRLSMSARELPASVPVWLVWHIPGGTVWAEEAAFRGALAT
Sbjct  61   GWAAGAAAATAIAATTPVPMVRLSMSARELPASVPVWLVWHIPGGTVWAEEAAFRGALAT  120

Query  121  IGARAFGRSGGRILQAGAFGLSHIADARATGEPLVLTVLATGIAGWMFGWLADRSGSLAA  180
            IGARAFGRSGGR+LQAGAFGLSHIADARATGEPLVLTVLATGIAGWMFGWLADRSGSLAA
Sbjct  121  IGARAFGRSGGRVLQAGAFGLSHIADARATGEPLVLTVLATGIAGWMFGWLADRSGSLAA  180

Query  181  PLLTHLAINEAGAVAAVLVQRRSGISTRL  209
            PLLTHLAINEAGAVAAVLVQRRSGISTRL
Sbjct  181  PLLTHLAINEAGAVAAVLVQRRSGISTRL  209


>gi|340625819|ref|YP_004744271.1| hypothetical protein MCAN_08051 [Mycobacterium canettii CIPT 
140010059]
 gi|340004009|emb|CCC43145.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=209

 Score =  379 bits (972),  Expect = 2e-103, Method: Compositional matrix adjust.
 Identities = 205/209 (99%), Positives = 207/209 (99%), Gaps = 0/209 (0%)

Query  1    MSRLRALSLAAGLVGWSLVSPRLPAPWRIPLQAGLGSVLVLVTRATMGLWPPRLWAGLRL  60
            MSRLRALSLAAGLVGWSLV PRLPAPWRIPLQAGLGSVLVLVTRATMGLWPPRLWAGLRL
Sbjct  1    MSRLRALSLAAGLVGWSLVGPRLPAPWRIPLQAGLGSVLVLVTRATMGLWPPRLWAGLRL  60

Query  61   GWAAGAAAATAIAATTPVPMVRLSMSARELPASVPVWLVWHIPGGTVWAEEAAFRGALAT  120
            G AAGAAAATAIAATTPVPMVRLSMSARELPASVPVWLVWHIPGGTVWAEEAAFRGAL+T
Sbjct  61   GSAAGAAAATAIAATTPVPMVRLSMSARELPASVPVWLVWHIPGGTVWAEEAAFRGALST  120

Query  121  IGARAFGRSGGRILQAGAFGLSHIADARATGEPLVLTVLATGIAGWMFGWLADRSGSLAA  180
            IGARAFGRSGGRILQAGAFGLSHIADARATGEP+VLTVLATGIAGWMFGWLADRSGSLAA
Sbjct  121  IGARAFGRSGGRILQAGAFGLSHIADARATGEPVVLTVLATGIAGWMFGWLADRSGSLAA  180

Query  181  PLLTHLAINEAGAVAAVLVQRRSGISTRL  209
            PLLTHLAINEAGAVAAVLVQRRSGISTRL
Sbjct  181  PLLTHLAINEAGAVAAVLVQRRSGISTRL  209


>gi|167967717|ref|ZP_02549994.1| hypothetical protein MtubH3_06643 [Mycobacterium tuberculosis 
H37Ra]
Length=201

 Score =  372 bits (954),  Expect = 3e-101, Method: Compositional matrix adjust.
 Identities = 200/201 (99%), Positives = 201/201 (100%), Gaps = 0/201 (0%)

Query  9    LAAGLVGWSLVSPRLPAPWRIPLQAGLGSVLVLVTRATMGLWPPRLWAGLRLGWAAGAAA  68
            +AAGLVGWSLVSPRLPAPWRIPLQAGLGSVLVLVTRATMGLWPPRLWAGLRLGWAAGAAA
Sbjct  1    MAAGLVGWSLVSPRLPAPWRIPLQAGLGSVLVLVTRATMGLWPPRLWAGLRLGWAAGAAA  60

Query  69   ATAIAATTPVPMVRLSMSARELPASVPVWLVWHIPGGTVWAEEAAFRGALATIGARAFGR  128
            ATAIAATTPVPMVRLSMSARELPASVPVWLVWHIPGGTVWAEEAAFRGALATIGARAFGR
Sbjct  61   ATAIAATTPVPMVRLSMSARELPASVPVWLVWHIPGGTVWAEEAAFRGALATIGARAFGR  120

Query  129  SGGRILQAGAFGLSHIADARATGEPLVLTVLATGIAGWMFGWLADRSGSLAAPLLTHLAI  188
            SGGRILQAGAFGLSHIADARATGEPLVLTVLATGIAGWMFGWLADRSGSLAAPLLTHLAI
Sbjct  121  SGGRILQAGAFGLSHIADARATGEPLVLTVLATGIAGWMFGWLADRSGSLAAPLLTHLAI  180

Query  189  NEAGAVAAVLVQRRSGISTRL  209
            NEAGAVAAVLVQRRSGISTRL
Sbjct  181  NEAGAVAAVLVQRRSGISTRL  201


>gi|289568757|ref|ZP_06448984.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium 
tuberculosis T17]
 gi|289542511|gb|EFD46159.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium 
tuberculosis T17]
Length=132

 Score =  244 bits (622),  Expect = 8e-63, Method: Compositional matrix adjust.
 Identities = 132/132 (100%), Positives = 132/132 (100%), Gaps = 0/132 (0%)

Query  1    MSRLRALSLAAGLVGWSLVSPRLPAPWRIPLQAGLGSVLVLVTRATMGLWPPRLWAGLRL  60
            MSRLRALSLAAGLVGWSLVSPRLPAPWRIPLQAGLGSVLVLVTRATMGLWPPRLWAGLRL
Sbjct  1    MSRLRALSLAAGLVGWSLVSPRLPAPWRIPLQAGLGSVLVLVTRATMGLWPPRLWAGLRL  60

Query  61   GWAAGAAAATAIAATTPVPMVRLSMSARELPASVPVWLVWHIPGGTVWAEEAAFRGALAT  120
            GWAAGAAAATAIAATTPVPMVRLSMSARELPASVPVWLVWHIPGGTVWAEEAAFRGALAT
Sbjct  61   GWAAGAAAATAIAATTPVPMVRLSMSARELPASVPVWLVWHIPGGTVWAEEAAFRGALAT  120

Query  121  IGARAFGRSGGR  132
            IGARAFGRSGGR
Sbjct  121  IGARAFGRSGGR  132


>gi|183984855|ref|YP_001853146.1| hypothetical protein MMAR_4887 [Mycobacterium marinum M]
 gi|183178181|gb|ACC43291.1| conserved hypothetical secreted protein [Mycobacterium marinum 
M]
Length=204

 Score =  243 bits (620),  Expect = 1e-62, Method: Compositional matrix adjust.
 Identities = 145/190 (77%), Positives = 159/190 (84%), Gaps = 0/190 (0%)

Query  13   LVGWSLVSPRLPAPWRIPLQAGLGSVLVLVTRATMGLWPPRLWAGLRLGWAAGAAAATAI  72
            +VGWSL SPRLPA WR+ LQA LG +LVLVTRA +GL PPRLWAGLRLG  A A  ATAI
Sbjct  1    MVGWSLASPRLPARWRVALQAVLGGLLVLVTRAPLGLTPPRLWAGLRLGAVAAAPVATAI  60

Query  73   AATTPVPMVRLSMSARELPASVPVWLVWHIPGGTVWAEEAAFRGALATIGARAFGRSGGR  132
            AATTPVPMVRLSMS R+LPASVP WL   IP GTVWAEEAAFR ALAT+G R FG  GGR
Sbjct  61   AATTPVPMVRLSMSERDLPASVPGWLGLQIPFGTVWAEEAAFRAALATMGTRGFGHVGGR  120

Query  133  ILQAGAFGLSHIADARATGEPLVLTVLATGIAGWMFGWLADRSGSLAAPLLTHLAINEAG  192
            +LQA  FGLSH+ADARATG P V TVL TG+AGW+FGWLA+RSGSLAAP++ HLAINEAG
Sbjct  121  LLQAATFGLSHVADARATGAPPVPTVLVTGLAGWLFGWLAERSGSLAAPMVLHLAINEAG  180

Query  193  AVAAVLVQRR  202
            AVAA+ VQRR
Sbjct  181  AVAALTVQRR  190


>gi|118616265|ref|YP_904597.1| hypothetical protein MUL_0411 [Mycobacterium ulcerans Agy99]
 gi|118568375|gb|ABL03126.1| conserved hypothetical secreted protein [Mycobacterium ulcerans 
Agy99]
Length=204

 Score =  235 bits (600),  Expect = 2e-60, Method: Compositional matrix adjust.
 Identities = 142/190 (75%), Positives = 157/190 (83%), Gaps = 0/190 (0%)

Query  13   LVGWSLVSPRLPAPWRIPLQAGLGSVLVLVTRATMGLWPPRLWAGLRLGWAAGAAAATAI  72
            +V WSL SPRLPA WR+ LQA LG +LVLVTRA +GL PPRLWAGLRLG  A A  ATA 
Sbjct  1    MVSWSLASPRLPARWRVALQAVLGGLLVLVTRAPLGLTPPRLWAGLRLGAVAAAPVATAT  60

Query  73   AATTPVPMVRLSMSARELPASVPVWLVWHIPGGTVWAEEAAFRGALATIGARAFGRSGGR  132
            AATTPVPMVRLSMS R+LPASVP WL   IP GTVWAEEAAFR ALAT+G R FG  GG+
Sbjct  61   AATTPVPMVRLSMSERDLPASVPGWLGLQIPFGTVWAEEAAFRAALATMGTRGFGHVGGQ  120

Query  133  ILQAGAFGLSHIADARATGEPLVLTVLATGIAGWMFGWLADRSGSLAAPLLTHLAINEAG  192
            +LQA  FGLSH+ADARATG P V TVL TG+AGW+FGWLA+RSGSLAAP++ HLAINEAG
Sbjct  121  LLQAVTFGLSHVADARATGAPPVPTVLVTGLAGWLFGWLAERSGSLAAPMVLHLAINEAG  180

Query  193  AVAAVLVQRR  202
            AVAA+ VQRR
Sbjct  181  AVAALTVQRR  190


>gi|240172685|ref|ZP_04751344.1| hypothetical protein MkanA1_25445 [Mycobacterium kansasii ATCC 
12478]
Length=207

 Score =  231 bits (588),  Expect = 6e-59, Method: Compositional matrix adjust.
 Identities = 149/195 (77%), Positives = 165/195 (85%), Gaps = 0/195 (0%)

Query  9    LAAGLVGWSLVSPRLPAPWRIPLQAGLGSVLVLVTRATMGLWPPRLWAGLRLGWAAGAAA  68
            +AAGLVGWS V+PRLP  WR+ LQAGLG +LV +TRA +GL PPRLWAGLRLG AA A  
Sbjct  1    MAAGLVGWSFVAPRLPTAWRVGLQAGLGCLLVWLTRAPVGLRPPRLWAGLRLGAAAAAVT  60

Query  69   ATAIAATTPVPMVRLSMSARELPASVPVWLVWHIPGGTVWAEEAAFRGALATIGARAFGR  128
             TAIAA+ PVP+VRLSMS RELP+S P WLV HIP GTVWAEEAAFR ALAT G +AFG 
Sbjct  61   TTAIAASAPVPVVRLSMSERELPSSAPGWLVLHIPFGTVWAEEAAFRAALATAGTQAFGP  120

Query  129  SGGRILQAGAFGLSHIADARATGEPLVLTVLATGIAGWMFGWLADRSGSLAAPLLTHLAI  188
             GGR+LQAGAFGLSHIADARATG P V TVL TG+AGW+FGWLA+RSGSLAAP+LTHLAI
Sbjct  121  VGGRLLQAGAFGLSHIADARATGAPAVPTVLVTGLAGWVFGWLAERSGSLAAPILTHLAI  180

Query  189  NEAGAVAAVLVQRRS  203
            NEAGAVAA+ VQRR 
Sbjct  181  NEAGAVAALAVQRRQ  195


>gi|342860279|ref|ZP_08716930.1| caax amino protease [Mycobacterium colombiense CECT 3035]
 gi|342131934|gb|EGT85175.1| caax amino protease [Mycobacterium colombiense CECT 3035]
Length=209

 Score =  214 bits (546),  Expect = 4e-54, Method: Compositional matrix adjust.
 Identities = 134/195 (69%), Positives = 154/195 (79%), Gaps = 0/195 (0%)

Query  6    ALSLAAGLVGWSLVSPRLPAPWRIPLQAGLGSVLVLVTRATMGLWPPRLWAGLRLGWAAG  65
            ALSLAA LVGWS V PRLPA WR  LQAG G +LV +TRA +GL PPRL  GLRLG  A 
Sbjct  11   ALSLAAALVGWSFVGPRLPASWRAVLQAGAGGLLVAMTRAPLGLDPPRLRPGLRLGSVAA  70

Query  66   AAAATAIAATTPVPMVRLSMSARELPASVPVWLVWHIPGGTVWAEEAAFRGALATIGARA  125
              AA A+AATT +P VR SM+ RE PA+ P WL+  IP  TVW+EE+AFRGALA  G+ A
Sbjct  71   LPAACAVAATTLLPPVRRSMADREPPAAAPDWLLLRIPVATVWSEESAFRGALAAAGSAA  130

Query  126  FGRSGGRILQAGAFGLSHIADARATGEPLVLTVLATGIAGWMFGWLADRSGSLAAPLLTH  185
            FGR  GR+LQA AFGLSHIADARATGEP+ +TVL TG+AGW+FGWLADRSGSLAAP+L H
Sbjct  131  FGRRRGRLLQASAFGLSHIADARATGEPVAVTVLVTGLAGWLFGWLADRSGSLAAPMLAH  190

Query  186  LAINEAGAVAAVLVQ  200
            LAINEAGA+A + V+
Sbjct  191  LAINEAGAIAVLAVR  205


>gi|296166438|ref|ZP_06848870.1| caax amino protease [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898199|gb|EFG77773.1| caax amino protease [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=211

 Score =  207 bits (528),  Expect = 6e-52, Method: Compositional matrix adjust.
 Identities = 133/189 (71%), Positives = 155/189 (83%), Gaps = 0/189 (0%)

Query  14   VGWSLVSPRLPAPWRIPLQAGLGSVLVLVTRATMGLWPPRLWAGLRLGWAAGAAAATAIA  73
            VGWS V PRLP  WR+ LQAG   +L LVTRA +GL PPRLWAGLRLG AAGAAAATAIA
Sbjct  19   VGWSFVGPRLPVAWRVTLQAGAAGLLALVTRAPLGLSPPRLWAGLRLGSAAGAAAATAIA  78

Query  74   ATTPVPMVRLSMSARELPASVPVWLVWHIPGGTVWAEEAAFRGALATIGARAFGRSGGRI  133
            ATT VP+VR SM+ RE P SVP WL+  IP GTVW+EEAAFR AL+   +  +G SGGR+
Sbjct  79   ATTAVPLVRTSMADREPPGSVPGWLLLRIPVGTVWSEEAAFRAALSAAASGGWGTSGGRL  138

Query  134  LQAGAFGLSHIADARATGEPLVLTVLATGIAGWMFGWLADRSGSLAAPLLTHLAINEAGA  193
            LQA +FGLSHIADARA G+P++ TVLATG+AGW+FGWLADRSGSLAAP+L HLA+NEAGA
Sbjct  139  LQAASFGLSHIADARAAGDPVLGTVLATGVAGWLFGWLADRSGSLAAPMLAHLAVNEAGA  198

Query  194  VAAVLVQRR  202
            +AA+ V+R 
Sbjct  199  IAALGVRRH  207


>gi|118462318|ref|YP_880020.1| caax amino protease [Mycobacterium avium 104]
 gi|118163605|gb|ABK64502.1| caax amino protease family protein [Mycobacterium avium 104]
Length=216

 Score =  203 bits (516),  Expect = 1e-50, Method: Compositional matrix adjust.
 Identities = 132/206 (65%), Positives = 150/206 (73%), Gaps = 3/206 (1%)

Query  2    SRLR---ALSLAAGLVGWSLVSPRLPAPWRIPLQAGLGSVLVLVTRATMGLWPPRLWAGL  58
            SR R   ALSLA  LVGWS V PRLPA  R+ LQAG+G+ LV +TRA +GL PPRLWAGL
Sbjct  4    SRFRRTAALSLAGALVGWSFVGPRLPAGARMVLQAGMGAALVALTRAPLGLHPPRLWAGL  63

Query  59   RLGWAAGAAAATAIAATTPVPMVRLSMSARELPASVPVWLVWHIPGGTVWAEEAAFRGAL  118
            R G A    AA A+AATT VP VR SM+ RE PA  P WL+  IP GTVW+EEAAFR AL
Sbjct  64   RCGAAVAGCAAGAVAATTLVPAVRESMAGREPPAPAPDWLLLRIPVGTVWSEEAAFRAAL  123

Query  119  ATIGARAFGRSGGRILQAGAFGLSHIADARATGEPLVLTVLATGIAGWMFGWLADRSGSL  178
               G+ AFGR    +LQA AFGLSHIADARA GEP+  TV  T + GW FGWL DR GSL
Sbjct  124  TAAGSAAFGRRSAMLLQAIAFGLSHIADARAIGEPVAGTVAVTAVGGWFFGWLTDRCGSL  183

Query  179  AAPLLTHLAINEAGAVAAVLVQRRSG  204
            AAP+L HLA+NEAGA+A + V+RRSG
Sbjct  184  AAPMLAHLAVNEAGAIAVLAVRRRSG  209


>gi|326904976|gb|EGE51909.1| hypothetical protein TBPG_02900 [Mycobacterium tuberculosis W-148]
Length=217

 Score =  195 bits (495),  Expect = 4e-48, Method: Compositional matrix adjust.
 Identities = 118/118 (100%), Positives = 118/118 (100%), Gaps = 0/118 (0%)

Query  1    MSRLRALSLAAGLVGWSLVSPRLPAPWRIPLQAGLGSVLVLVTRATMGLWPPRLWAGLRL  60
            MSRLRALSLAAGLVGWSLVSPRLPAPWRIPLQAGLGSVLVLVTRATMGLWPPRLWAGLRL
Sbjct  1    MSRLRALSLAAGLVGWSLVSPRLPAPWRIPLQAGLGSVLVLVTRATMGLWPPRLWAGLRL  60

Query  61   GWAAGAAAATAIAATTPVPMVRLSMSARELPASVPVWLVWHIPGGTVWAEEAAFRGAL  118
            GWAAGAAAATAIAATTPVPMVRLSMSARELPASVPVWLVWHIPGGTVWAEEAAFRGAL
Sbjct  61   GWAAGAAAATAIAATTPVPMVRLSMSARELPASVPVWLVWHIPGGTVWAEEAAFRGAL  118


>gi|108801507|ref|YP_641704.1| abortive infection protein [Mycobacterium sp. MCS]
 gi|119870660|ref|YP_940612.1| abortive infection protein [Mycobacterium sp. KMS]
 gi|126437492|ref|YP_001073183.1| abortive infection protein [Mycobacterium sp. JLS]
 gi|108771926|gb|ABG10648.1| Abortive infection protein [Mycobacterium sp. MCS]
 gi|119696749|gb|ABL93822.1| Abortive infection protein [Mycobacterium sp. KMS]
 gi|126237292|gb|ABO00693.1| Abortive infection protein [Mycobacterium sp. JLS]
Length=212

 Score =  190 bits (483),  Expect = 1e-46, Method: Compositional matrix adjust.
 Identities = 118/201 (59%), Positives = 143/201 (72%), Gaps = 1/201 (0%)

Query  2    SRLRALSLAAGLVGWS-LVSPRLPAPWRIPLQAGLGSVLVLVTRATMGLWPPRLWAGLRL  60
            + + AL+LA  LV  S LVSPRLP  W   + A  G+ L   TRA +GL PP L  GL  
Sbjct  4    NEVAALTLATALVALSGLVSPRLPERWAAVVHAVFGASLAAATRAPLGLRPPALRGGLGA  63

Query  61   GWAAGAAAATAIAATTPVPMVRLSMSARELPASVPVWLVWHIPGGTVWAEEAAFRGALAT  120
            G  A A   T +AA + VP VR +M AR+LPA+   WL+  IP GTVWAEE A+RGAL  
Sbjct  64   GATAAAVVTTGVAAASAVPGVRSAMKARDLPAAPTRWLILRIPLGTVWAEELAYRGALGY  123

Query  121  IGARAFGRSGGRILQAGAFGLSHIADARATGEPLVLTVLATGIAGWMFGWLADRSGSLAA  180
            +GA AFG + GR+LQ+ AFGLSHIADARA GEP+V TV+ TGIAGW+F WLA+RSGSL A
Sbjct  124  LGASAFGPTRGRLLQSVAFGLSHIADARAAGEPVVGTVVTTGIAGWVFAWLAERSGSLVA  183

Query  181  PLLTHLAINEAGAVAAVLVQR  201
            P+L HLA+NEAGA+AA+ VQR
Sbjct  184  PMLAHLAVNEAGALAALAVQR  204


>gi|41406734|ref|NP_959570.1| hypothetical protein MAP0636 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41395084|gb|AAS02953.1| hypothetical protein MAP_0636 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|336458321|gb|EGO37300.1| CAAX amino terminal protease family [Mycobacterium avium subsp. 
paratuberculosis S397]
Length=216

 Score =  187 bits (476),  Expect = 6e-46, Method: Compositional matrix adjust.
 Identities = 133/204 (66%), Positives = 149/204 (74%), Gaps = 0/204 (0%)

Query  1    MSRLRALSLAAGLVGWSLVSPRLPAPWRIPLQAGLGSVLVLVTRATMGLWPPRLWAGLRL  60
              R  ALSLA  LVGWS   PRLPA  R+ LQAG+G+ LV +TRA +GL PPRLWAGLR 
Sbjct  6    FRRTAALSLAGALVGWSFAGPRLPAGARMVLQAGMGAALVALTRAPLGLHPPRLWAGLRC  65

Query  61   GWAAGAAAATAIAATTPVPMVRLSMSARELPASVPVWLVWHIPGGTVWAEEAAFRGALAT  120
            G A    AA A+AATT VP VR SM+ RE PA  P WL+  IP GTVW+EEAAFR AL  
Sbjct  66   GAAVAGCAAGAVAATTLVPAVRESMAGREPPAPAPDWLLLRIPVGTVWSEEAAFRAALTA  125

Query  121  IGARAFGRSGGRILQAGAFGLSHIADARATGEPLVLTVLATGIAGWMFGWLADRSGSLAA  180
             G+ AFGR G  +LQA AFGLSHIADARA GEPL  TVL T + GW FGWL DR GSLAA
Sbjct  126  AGSAAFGRRGAMLLQAIAFGLSHIADARAIGEPLAGTVLVTAVGGWFFGWLTDRCGSLAA  185

Query  181  PLLTHLAINEAGAVAAVLVQRRSG  204
            PLL HLA+NEAGA+A + V+RRSG
Sbjct  186  PLLAHLAVNEAGAIAVLAVRRRSG  209


>gi|254821048|ref|ZP_05226049.1| caax amino protease family protein [Mycobacterium intracellulare 
ATCC 13950]
Length=157

 Score =  187 bits (475),  Expect = 9e-46, Method: Compositional matrix adjust.
 Identities = 105/155 (68%), Positives = 123/155 (80%), Gaps = 0/155 (0%)

Query  51   PPRLWAGLRLGWAAGAAAATAIAATTPVPMVRLSMSARELPASVPVWLVWHIPGGTVWAE  110
            PPRLWAGLRLG A   +AA+ +AATT +P VR SM+ RE PAS P WL+  IP GTVW+E
Sbjct  1    PPRLWAGLRLGSAVAFSAASTVAATTRLPPVRQSMAVREPPASAPDWLLVRIPVGTVWSE  60

Query  111  EAAFRGALATIGARAFGRSGGRILQAGAFGLSHIADARATGEPLVLTVLATGIAGWMFGW  170
            E+AFR ALAT G+ AFGR GGR+LQA AFGLSHI DARATGEP+  TVL TGI GW+FGW
Sbjct  61   ESAFRAALATAGSAAFGRRGGRVLQAIAFGLSHIPDARATGEPVAATVLVTGIGGWLFGW  120

Query  171  LADRSGSLAAPLLTHLAINEAGAVAAVLVQRRSGI  205
            LADR+GSLAAP+L HLAINEAGA+A +  + R  +
Sbjct  121  LADRTGSLAAPMLAHLAINEAGAIAVLAARSRGAV  155


>gi|120406065|ref|YP_955894.1| abortive infection protein [Mycobacterium vanbaalenii PYR-1]
 gi|119958883|gb|ABM15888.1| Abortive infection protein [Mycobacterium vanbaalenii PYR-1]
Length=223

 Score =  182 bits (462),  Expect = 3e-44, Method: Compositional matrix adjust.
 Identities = 108/199 (55%), Positives = 131/199 (66%), Gaps = 0/199 (0%)

Query  4    LRALSLAAGLVGWSLVSPRLPAPWRIPLQAGLGSVLVLVTRATMGLWPPRLWAGLRLGWA  63
            +RA +LA  L+GWSL +PRLP  W    Q   G+ +  +  A +GL PP LW GL+ G A
Sbjct  5    VRATALAMLLLGWSLAAPRLPQRWNPLPQTMFGAGVAALAGAPLGLRPPMLWRGLQWGSA  64

Query  64   AGAAAATAIAATTPVPMVRLSMSARELPASVPVWLVWHIPGGTVWAEEAAFRGALATIGA  123
            A A  A ++AA T  P VR  M AR+LP     WL+  IP GTVW+EEA FR AL     
Sbjct  65   AVAPVALSVAAATTSPPVRAGMVARDLPDPAASWLLLRIPFGTVWSEEATFRAALGATAE  124

Query  124  RAFGRSGGRILQAGAFGLSHIADARATGEPLVLTVLATGIAGWMFGWLADRSGSLAAPLL  183
            RAFGR+ GR+  A  FGLSH+ DARA  EP++ TVL TG AGW F WL  +SGSL AP+L
Sbjct  125  RAFGRTAGRLFAATVFGLSHVPDARAAREPILGTVLVTGTAGWAFSWLYAKSGSLVAPML  184

Query  184  THLAINEAGAVAAVLVQRR  202
             HLA+NEAGAVAA+ VQRR
Sbjct  185  AHLAVNEAGAVAALAVQRR  203


>gi|118473845|ref|YP_890050.1| caax amino protease [Mycobacterium smegmatis str. MC2 155]
 gi|118175132|gb|ABK76028.1| caax amino protease family protein [Mycobacterium smegmatis str. 
MC2 155]
Length=218

 Score =  180 bits (456),  Expect = 1e-43, Method: Compositional matrix adjust.
 Identities = 109/191 (58%), Positives = 135/191 (71%), Gaps = 5/191 (2%)

Query  18   LVSPRLPAPWRIPLQAGLGSVLVLVTRAT-----MGLWPPRLWAGLRLGWAAGAAAATAI  72
            +V PRLP   R  ++A +G+ L+ ++RA       GL PP LW+G+R G  A A  A+++
Sbjct  24   VVDPRLPERCRPVVRALVGTALLGLSRAAPGSRRSGLRPPALWSGMRTGSVAAAVVASSV  83

Query  73   AATTPVPMVRLSMSARELPASVPVWLVWHIPGGTVWAEEAAFRGALATIGARAFGRSGGR  132
             ATT +P VR +M  RELP +V  WL+  IP GTVW+EEAAFRGAL  +G  AFG +GGR
Sbjct  84   VATTALPAVRTAMRERELPPAVAFWLMLGIPLGTVWSEEAAFRGALGAVGTGAFGHTGGR  143

Query  133  ILQAGAFGLSHIADARATGEPLVLTVLATGIAGWMFGWLADRSGSLAAPLLTHLAINEAG  192
            +LQA AFGLSHI DARA GEP+V TVLATG AGW   WL  R+ SLAAPLL HLA+NEAG
Sbjct  144  LLQATAFGLSHIPDARAAGEPVVGTVLATGAAGWFLDWLMHRTKSLAAPLLVHLALNEAG  203

Query  193  AVAAVLVQRRS  203
            A+AAV   R+S
Sbjct  204  ALAAVWYARKS  214


>gi|145222224|ref|YP_001132902.1| abortive infection protein [Mycobacterium gilvum PYR-GCK]
 gi|315442663|ref|YP_004075542.1| CAAX amino terminal protease family [Mycobacterium sp. Spyr1]
 gi|145214710|gb|ABP44114.1| Abortive infection protein [Mycobacterium gilvum PYR-GCK]
 gi|315260966|gb|ADT97707.1| CAAX amino terminal protease family [Mycobacterium sp. Spyr1]
Length=215

 Score =  161 bits (408),  Expect = 5e-38, Method: Compositional matrix adjust.
 Identities = 99/202 (50%), Positives = 127/202 (63%), Gaps = 1/202 (0%)

Query  4    LRALSLAAGLVGWSLVSPRLPAPWRIPLQAGLGSVLVLVTRATMGLWPPRLWAGLRLGWA  63
            +RA+ LAA L+GWS  +PRLP  W           + L++R ++GL P +L  G+R G A
Sbjct  5    VRAVGLAAALLGWSATAPRLPQEWNPLPHMVFSGAVTLLSRPSLGLRPAQLRRGVRWGSA  64

Query  64   AGAAAATAIAATTPVPMVRLSMSARELPASVPVWLVWHIPGGTVWAEEAAFRGALATIGA  123
            A A     +AA    P VR  M+AR+LPA+   WL+  IP  TV  EE A+R  L     
Sbjct  65   AAAPVGLGVAAGLMAPAVRAGMAARDLPAAPARWLLLRIPFATVGPEELAYRAVLGDAAT  124

Query  124  RAFGRSGGRILQAGAFGLSHIADARATGEPLVLTVLATGIAGWMFGWLADRSGSLAAPLL  183
            RAFG   G++  A  FGLSH+ DARA G+ +  TV+ TG AGW+F WL + SGSLAAP+L
Sbjct  125  RAFGPRVGKLFTAVVFGLSHVPDARAAGDNVPGTVVVTGAAGWVFSWLHESSGSLAAPVL  184

Query  184  THLAINEAGAVAAVLV-QRRSG  204
             HLA+NEAGAVAA+ V QRRSG
Sbjct  185  AHLAVNEAGAVAALAVQQRRSG  206


>gi|169627810|ref|YP_001701459.1| hypothetical protein MAB_0709 [Mycobacterium abscessus ATCC 19977]
 gi|169239777|emb|CAM60805.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=213

 Score =  144 bits (362),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 90/188 (48%), Positives = 116/188 (62%), Gaps = 0/188 (0%)

Query  16   WSLVSPRLPAPWRIPLQAGLGSVLVLVTRATMGLWPPRLWAGLRLGWAAGAAAATAIAAT  75
            W  V  R P  WR  + AG  + L       +GL PP+L AGLRLG    +A A A+ A+
Sbjct  16   WPAVLERFPQRWRPLIGAGTSTALAGAAGIPLGLRPPQLGAGLRLGGIVASAVAAAVGAS  75

Query  76   TPVPMVRLSMSARELPASVPVWLVWHIPGGTVWAEEAAFRGALATIGARAFGRSGGRILQ  135
              +  VR SM AR++     VWL  HIP GTVW+EE AFRG L  +   AFGR+ G  +Q
Sbjct  76   PALQPVRASMRARDIDLHPAVWLGLHIPVGTVWSEELAFRGVLQPLATEAFGRTAGSAVQ  135

Query  136  AGAFGLSHIADARATGEPLVLTVLATGIAGWMFGWLADRSGSLAAPLLTHLAINEAGAVA  195
            A  FGL+HI  ARA G+ +  TVL TG+ GW+ G L +RSGS+ AP+L HLA+NEAGAVA
Sbjct  136  AMVFGLAHIRPARAAGDSIPGTVLVTGMFGWLLGRLRERSGSVVAPMLAHLALNEAGAVA  195

Query  196  AVLVQRRS  203
             + + R +
Sbjct  196  TLYLGRSN  203


>gi|254773686|ref|ZP_05215202.1| caax amino protease family protein [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=112

 Score =  117 bits (292),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 68/103 (67%), Positives = 78/103 (76%), Gaps = 0/103 (0%)

Query  102  IPGGTVWAEEAAFRGALATIGARAFGRSGGRILQAGAFGLSHIADARATGEPLVLTVLAT  161
            IP GTVW+EEAAFR AL   G+ AFGR    +LQA AFGLSHIADARA GEP+  TVL T
Sbjct  3    IPVGTVWSEEAAFRAALTAAGSAAFGRRSAMLLQAIAFGLSHIADARAIGEPVAGTVLVT  62

Query  162  GIAGWMFGWLADRSGSLAAPLLTHLAINEAGAVAAVLVQRRSG  204
             + GW FGWL DR GSLAAP+L HL +NEAGA+A + V+ RSG
Sbjct  63   AVGGWFFGWLTDRCGSLAAPMLAHLVVNEAGAIAVLAVRHRSG  105


>gi|333918369|ref|YP_004491950.1| abortive infection protein [Amycolicicoccus subflavus DQS3-9A1]
 gi|333480590|gb|AEF39150.1| Abortive infection protein [Amycolicicoccus subflavus DQS3-9A1]
Length=229

 Score =  100 bits (248),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 74/166 (45%), Positives = 97/166 (59%), Gaps = 9/166 (5%)

Query  39   LVLVTRATMGLWPPRLWAGLRLGWAAGAAAATAIAATTPVPMVRLSMSARELPASVPV--  96
            L+ V RA + L    L AG+R+G  A AA   A       P +R  ++ R++ +   +  
Sbjct  49   LMGVERAELRLEARSLPAGVRMGLVASAAPTVAYVVIGATPWLRKKVT-RDVKSRREIMG  107

Query  97   WLVWHIPGGTVWAEEAAFRGALATIGARAFGRSGGRILQ----AGA--FGLSHIADARAT  150
            W+V+HIP GTV  EE AFR AL+ + ARA G    R       AGA  FGL HIA ARA 
Sbjct  108  WVVFHIPMGTVLCEELAFRSALSALWARALGDRDRRATSPAQLAGAITFGLWHIAPARAA  167

Query  151  GEPLVLTVLATGIAGWMFGWLADRSGSLAAPLLTHLAINEAGAVAA  196
            G+P+V TVL T  AG +F  LA RSGS+AAP++ H A+N  GA+ A
Sbjct  168  GDPVVATVLFTTAAGLVFDRLAQRSGSVAAPMILHAAVNMGGALVA  213


>gi|229488497|ref|ZP_04382363.1| abortive infection protein [Rhodococcus erythropolis SK121]
 gi|229324001|gb|EEN89756.1| abortive infection protein [Rhodococcus erythropolis SK121]
Length=218

 Score = 94.0 bits (232),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 69/195 (36%), Positives = 101/195 (52%), Gaps = 9/195 (4%)

Query  19   VSPRLPAPWRIPLQAGLGSVLVLV----TRATMGLWPPRLWAGLRLGWAAGAAAATAIAA  74
            +SPR  A   +   AGL ++ VL+    TR  +GL    +  G + G AA  A  T  + 
Sbjct  26   LSPRARAV--VNTAAGLSAIGVLLARGYTREELGLAHTGIRGGSQFGGAAAGAVLTGYSV  83

Query  75   TTPVPMVRLSMSARELP---ASVPVWLVWHIPGGTVWAEEAAFRGALATIGARAFGRSGG  131
               VP +R +++A E          W++ HIP GTV +EE  FR A++ + +R   R   
Sbjct  84   ALAVPSLRATLAADERADGREDFLEWIILHIPFGTVLSEELLFRSAMSAVWSRELNRPTA  143

Query  132  RILQAGAFGLSHIADARATGEPLVLTVLATGIAGWMFGWLADRSGSLAAPLLTHLAINEA  191
            + + A  FGL H+A AR  G+ +   V  TG +  +F WL  R GS+ AP L HLA N  
Sbjct  144  QAVHALTFGLWHVAPARGAGDNVPAAVAFTGASALLFEWLHRRGGSVLAPALLHLATNAG  203

Query  192  GAVAAVLVQRRSGIS  206
            GA+A  +  RR G++
Sbjct  204  GALAVRIATRRHGVN  218


>gi|226364331|ref|YP_002782113.1| hypothetical protein ROP_49210 [Rhodococcus opacus B4]
 gi|226242820|dbj|BAH53168.1| hypothetical protein [Rhodococcus opacus B4]
Length=214

 Score = 84.7 bits (208),  Expect = 8e-15, Method: Compositional matrix adjust.
 Identities = 57/157 (37%), Positives = 80/157 (51%), Gaps = 0/157 (0%)

Query  46   TMGLWPPRLWAGLRLGWAAGAAAATAIAATTPVPMVRLSMSARELPASVPVWLVWHIPGG  105
             +GL    + +GLR G AA        A    VP  R  +   +    V  W+ + IP G
Sbjct  55   ELGLSASAVRSGLRYGAAASVVPLAGYAIALGVPAARRQVPTGDRVGDVAGWVGFRIPVG  114

Query  106  TVWAEEAAFRGALATIGARAFGRSGGRILQAGAFGLSHIADARATGEPLVLTVLATGIAG  165
            TV  EE  FR  L+ +  R +  +   +L A  FGL H+  AR   +P+V +VL TG + 
Sbjct  115  TVAHEELLFRSVLSAMLRRGWTPTAADVLHAATFGLWHVRAARIARDPIVASVLLTGASA  174

Query  166  WMFGWLADRSGSLAAPLLTHLAINEAGAVAAVLVQRR  202
            W+F WL  RSGS+ AP L HL++N  G +AA   + R
Sbjct  175  WLFEWLRRRSGSVVAPALLHLSVNVGGVLAAEAARSR  211


>gi|226308317|ref|YP_002768277.1| hypothetical protein RER_48300 [Rhodococcus erythropolis PR4]
 gi|226187434|dbj|BAH35538.1| hypothetical membrane protein [Rhodococcus erythropolis PR4]
Length=218

 Score = 84.3 bits (207),  Expect = 9e-15, Method: Compositional matrix adjust.
 Identities = 52/140 (38%), Positives = 75/140 (54%), Gaps = 3/140 (2%)

Query  70   TAIAATTPVPMVRLSMSARELP---ASVPVWLVWHIPGGTVWAEEAAFRGALATIGARAF  126
            T  +A   VP +R +++A E          W++ HIP GTV +EE  FR A++ +  R  
Sbjct  79   TGYSAALVVPSLRATLAADERADGREDFLEWIILHIPFGTVLSEELLFRSAMSAVWNREL  138

Query  127  GRSGGRILQAGAFGLSHIADARATGEPLVLTVLATGIAGWMFGWLADRSGSLAAPLLTHL  186
             R   + + A  FGL H+A AR  G+ +   V  TG +  +F WL  R GS+ AP L HL
Sbjct  139  NRPTAQAVHALTFGLWHVAPARGAGDNVPAAVAFTGASALLFEWLHRRGGSVLAPALLHL  198

Query  187  AINEAGAVAAVLVQRRSGIS  206
            A N  GA+A  +  RR G++
Sbjct  199  ATNAGGALAVRIATRRQGVN  218


>gi|111021808|ref|YP_704780.1| protease [Rhodococcus jostii RHA1]
 gi|110821338|gb|ABG96622.1| possible protease [Rhodococcus jostii RHA1]
Length=214

 Score = 80.9 bits (198),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 60/158 (38%), Positives = 82/158 (52%), Gaps = 0/158 (0%)

Query  46   TMGLWPPRLWAGLRLGWAAGAAAATAIAATTPVPMVRLSMSARELPASVPVWLVWHIPGG  105
             +GL   +  +GLR G  A        A T  VP +R  +   +       W+ + IP G
Sbjct  55   ELGLSASKARSGLRYGALASVIPLAGYAITLSVPALRRRVPTGDDVTDFAGWVGFRIPVG  114

Query  106  TVWAEEAAFRGALATIGARAFGRSGGRILQAGAFGLSHIADARATGEPLVLTVLATGIAG  165
            TV  EE  FR  L+ +  RA+  +    L A  FGL H+  AR  G+ +  +VL TG + 
Sbjct  115  TVAHEELLFRSVLSAMLRRAWPPATAHALHAATFGLWHVRAARIAGDGVAASVLLTGCSA  174

Query  166  WMFGWLADRSGSLAAPLLTHLAINEAGAVAAVLVQRRS  203
            W+F W   RSGS+ AP L HL+IN  GAVAA LV+ R+
Sbjct  175  WLFEWARRRSGSVVAPALLHLSINVGGAVAAELVRART  212


>gi|54022542|ref|YP_116784.1| hypothetical protein nfa5750 [Nocardia farcinica IFM 10152]
 gi|54014050|dbj|BAD55420.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=225

 Score = 70.1 bits (170),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 42/107 (40%), Positives = 56/107 (53%), Gaps = 0/107 (0%)

Query  97   WLVWHIPGGTVWAEEAAFRGALATIGARAFGRSGGRILQAGAFGLSHIADARATGEPLVL  156
            W+  HIP GT   EE  FR  L  +   A G     ++    FGL HI  ARA G+P++ 
Sbjct  106  WITVHIPLGTALPEELIFRATLDPLLTTALGPRPALLIGPLTFGLWHIHSARAAGDPILP  165

Query  157  TVLATGIAGWMFGWLADRSGSLAAPLLTHLAINEAGAVAAVLVQRRS  203
            T+ AT  AG +F  L  R+    AP L HL +N AGAV     ++R+
Sbjct  166  TIAATTAAGVVFSSLYRRTAGAVAPTLVHLTLNTAGAVITTSARKRA  212


>gi|325674782|ref|ZP_08154469.1| caax amino protease [Rhodococcus equi ATCC 33707]
 gi|325554368|gb|EGD24043.1| caax amino protease [Rhodococcus equi ATCC 33707]
Length=221

 Score = 65.5 bits (158),  Expect = 5e-09, Method: Compositional matrix adjust.
 Identities = 64/165 (39%), Positives = 82/165 (50%), Gaps = 7/165 (4%)

Query  44   RATMGLWPPRLWAGLRLGWAAGAAAATAIAATTPVPMVRLSMSA-RELPASVPVWLVWHI  102
            R  +GL   R  AGLR G AA A      A    VP +    +   ++      W+  HI
Sbjct  53   RDELGLGNIR--AGLRWGSAAAALPVVGYAVALAVPSLHDRFAVPDDVRDDFAEWVSAHI  110

Query  103  PGGTVWAEEAAFRGALATIGARAFGRSGGRILQAGAFGLSHIADARATGEPLVLTVLATG  162
            P GTV  EE  FRG L  +  RAF  +G   ++A AFGL H+  A    + +  TV  T 
Sbjct  111  PFGTVATEELLFRGLLTAVTERAFPPAGATAIRAVAFGLWHVHPAHVADDSVPGTVAFTA  170

Query  163  IAGWMFGWLADRSGSLAAPLLTHLAINEAGAVAAVLVQRRSGIST  207
             A  +F WL  RSGSL AP L HLA+N  GA    L+ RR  ++T
Sbjct  171  AASLVFDWLRARSGSLLAPALLHLAVNAGGA----LLLRRIQVTT  211


>gi|296139909|ref|YP_003647152.1| hypothetical protein Tpau_2204 [Tsukamurella paurometabola DSM 
20162]
 gi|296028043|gb|ADG78813.1| Abortive infection protein [Tsukamurella paurometabola DSM 20162]
Length=204

 Score = 63.9 bits (154),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 42/107 (40%), Positives = 56/107 (53%), Gaps = 0/107 (0%)

Query  88   RELPASVPVWLVWHIPGGTVWAEEAAFRGALATIGARAFGRSGGRILQAGAFGLSHIADA  147
            RE P  +  W+   IP GTV  EE  FRG+L      A GR  G +  A  FGL H+  A
Sbjct  83   REDPPQLARWIALDIPFGTVVPEELLFRGSLTPQWEAALGRPVGSVAGALTFGLWHVGAA  142

Query  148  RATGEPLVLTVLATGIAGWMFGWLADRSGSLAAPLLTHLAINEAGAV  194
            +A  +P+  T++ T +AG  F  L  R+  L   +  H A+N AGAV
Sbjct  143  QAAHDPVFPTIVVTSVAGAAFDALVGRTRRLWPAMAAHWALNSAGAV  189


>gi|312138301|ref|YP_004005637.1| integral membrane protein [Rhodococcus equi 103S]
 gi|311887640|emb|CBH46952.1| putative integral membrane protein [Rhodococcus equi 103S]
Length=221

 Score = 63.2 bits (152),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 60/156 (39%), Positives = 76/156 (49%), Gaps = 5/156 (3%)

Query  53   RLWAGLRLGWAAGAAAATAIAATTPVPMVRLSMSA-RELPASVPVWLVWHIPGGTVWAEE  111
             L AGLR G AA A      A    VP +        ++      W+  HIP GTV  EE
Sbjct  60   NLRAGLRWGSAAAALPVVGYAVALAVPSLHDRFVVPDDVRDDFGEWVSAHIPFGTVATEE  119

Query  112  AAFRGALATIGARAFGRSGGRILQAGAFGLSHIADARATGEPLVLTVLATGIAGWMFGWL  171
              FRG L  +  RAF  +G   ++A  FGL H+  A    + +  TV  T  A  +F WL
Sbjct  120  LLFRGLLTAVTERAFPPAGATAIRAVTFGLWHVHPAHVADDSVPGTVAFTAAASLVFDWL  179

Query  172  ADRSGSLAAPLLTHLAINEAGAVAAVLVQRRSGIST  207
              RSGSL AP L HLA+N  GA    L+ RR  ++T
Sbjct  180  RARSGSLLAPALLHLAVNAGGA----LLLRRIQVTT  211


>gi|15609000|ref|NP_216379.1| integral membrane protein [Mycobacterium tuberculosis H37Rv]
 gi|15841332|ref|NP_336369.1| hypothetical protein MT1912 [Mycobacterium tuberculosis CDC1551]
 gi|31793053|ref|NP_855546.1| integral membrane protein [Mycobacterium bovis AF2122/97]
 50 more sequence titles
 gi|121637766|ref|YP_977989.1| putative integral membrane protein [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|148661669|ref|YP_001283192.1| putative integral membrane protein [Mycobacterium tuberculosis 
H37Ra]
 gi|148823074|ref|YP_001287828.1| integral membrane protein [Mycobacterium tuberculosis F11]
 gi|167970344|ref|ZP_02552621.1| conserved integral membrane protein [Mycobacterium tuberculosis 
H37Ra]
 gi|224990250|ref|YP_002644937.1| integral membrane protein [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253799093|ref|YP_003032094.1| hypothetical protein TBMG_02131 [Mycobacterium tuberculosis KZN 
1435]
 gi|254232041|ref|ZP_04925368.1| hypothetical protein TBCG_01815 [Mycobacterium tuberculosis C]
 gi|254364684|ref|ZP_04980730.1| conserved integral membrane protein [Mycobacterium tuberculosis 
str. Haarlem]
 gi|254550874|ref|ZP_05141321.1| hypothetical protein Mtube_10516 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|289443340|ref|ZP_06433084.1| conserved membrane protein [Mycobacterium tuberculosis T46]
 gi|289447477|ref|ZP_06437221.1| conserved membrane protein [Mycobacterium tuberculosis CPHL_A]
 gi|289554363|ref|ZP_06443573.1| conserved membrane protein [Mycobacterium tuberculosis KZN 605]
 gi|289569940|ref|ZP_06450167.1| conserved membrane protein [Mycobacterium tuberculosis T17]
 gi|289574545|ref|ZP_06454772.1| conserved membrane protein [Mycobacterium tuberculosis K85]
 gi|289745705|ref|ZP_06505083.1| integral membrane protein [Mycobacterium tuberculosis 02_1987]
 gi|289750442|ref|ZP_06509820.1| conserved membrane protein [Mycobacterium tuberculosis T92]
 gi|289757969|ref|ZP_06517347.1| integral membrane protein [Mycobacterium tuberculosis T85]
 gi|294996772|ref|ZP_06802463.1| hypothetical protein Mtub2_20268 [Mycobacterium tuberculosis 
210]
 gi|297634424|ref|ZP_06952204.1| hypothetical protein MtubK4_09896 [Mycobacterium tuberculosis 
KZN 4207]
 gi|297731411|ref|ZP_06960529.1| hypothetical protein MtubKR_09996 [Mycobacterium tuberculosis 
KZN R506]
 gi|298525355|ref|ZP_07012764.1| conserved integral membrane protein [Mycobacterium tuberculosis 
94_M4241A]
 gi|313658745|ref|ZP_07815625.1| hypothetical protein MtubKV_10011 [Mycobacterium tuberculosis 
KZN V2475]
 gi|339631916|ref|YP_004723558.1| hypothetical protein MAF_18850 [Mycobacterium africanum GM041182]
 gi|340626871|ref|YP_004745323.1| putative integral membrane protein [Mycobacterium canettii CIPT 
140010059]
 gi|1781184|emb|CAB06124.1| PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN [Mycobacterium tuberculosis 
H37Rv]
 gi|13881564|gb|AAK46183.1| hypothetical protein MT1912 [Mycobacterium tuberculosis CDC1551]
 gi|31618644|emb|CAD94597.1| PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN [Mycobacterium bovis 
AF2122/97]
 gi|121493413|emb|CAL71886.1| Probable conserved integral membrane protein [Mycobacterium bovis 
BCG str. Pasteur 1173P2]
 gi|124601100|gb|EAY60110.1| hypothetical protein TBCG_01815 [Mycobacterium tuberculosis C]
 gi|134150198|gb|EBA42243.1| conserved integral membrane protein [Mycobacterium tuberculosis 
str. Haarlem]
 gi|148505821|gb|ABQ73630.1| putative conserved integral membrane protein [Mycobacterium tuberculosis 
H37Ra]
 gi|148721601|gb|ABR06226.1| conserved integral membrane protein [Mycobacterium tuberculosis 
F11]
 gi|224773363|dbj|BAH26169.1| integral membrane protein [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253320596|gb|ACT25199.1| conserved membrane protein [Mycobacterium tuberculosis KZN 1435]
 gi|289416259|gb|EFD13499.1| conserved membrane protein [Mycobacterium tuberculosis T46]
 gi|289420435|gb|EFD17636.1| conserved membrane protein [Mycobacterium tuberculosis CPHL_A]
 gi|289438995|gb|EFD21488.1| conserved membrane protein [Mycobacterium tuberculosis KZN 605]
 gi|289538976|gb|EFD43554.1| conserved membrane protein [Mycobacterium tuberculosis K85]
 gi|289543694|gb|EFD47342.1| conserved membrane protein [Mycobacterium tuberculosis T17]
 gi|289686233|gb|EFD53721.1| integral membrane protein [Mycobacterium tuberculosis 02_1987]
 gi|289691029|gb|EFD58458.1| conserved membrane protein [Mycobacterium tuberculosis T92]
 gi|289713533|gb|EFD77545.1| integral membrane protein [Mycobacterium tuberculosis T85]
 gi|298495149|gb|EFI30443.1| conserved integral membrane protein [Mycobacterium tuberculosis 
94_M4241A]
 gi|323719604|gb|EGB28727.1| membrane protein [Mycobacterium tuberculosis CDC1551A]
 gi|326903465|gb|EGE50398.1| conserved membrane protein [Mycobacterium tuberculosis W-148]
 gi|328458848|gb|AEB04271.1| conserved membrane protein [Mycobacterium tuberculosis KZN 4207]
 gi|339331272|emb|CCC26955.1| putative conserved integral membrane protein [Mycobacterium africanum 
GM041182]
 gi|340005061|emb|CCC44210.1| putative conserved integral membrane protein [Mycobacterium canettii 
CIPT 140010059]
 gi|341601793|emb|CCC64467.1| probable conserved integral membrane protein [Mycobacterium bovis 
BCG str. Moreau RDJ]
 gi|344219684|gb|AEN00315.1| integral membrane protein [Mycobacterium tuberculosis CTRI-2]
Length=256

 Score = 61.2 bits (147),  Expect = 9e-08, Method: Compositional matrix adjust.
 Identities = 50/120 (42%), Positives = 63/120 (53%), Gaps = 18/120 (15%)

Query  102  IPGGTVWAEEAAFRGALATIGARAFGRSGGRILQAGAFGLSHIADA-----------RAT  150
            IP  TV  EE AFRG L     RA+G  G  +  +  FGL HIA +           R  
Sbjct  136  IPLQTVIPEELAFRGVLHGALNRAWGFRGVAVAGSVLFGLWHIATSLGLTSSNVGFTRLF  195

Query  151  GEPLV-------LTVLATGIAGWMFGWLADRSGSLAAPLLTHLAINEAGAVAAVLVQRRS  203
            G  ++       L VLATG+AG++F WL  RSGSL AP+  H ++N  GA+AA LV   S
Sbjct  196  GGGIIGLVAGVMLAVLATGVAGFVFSWLRRRSGSLIAPIALHWSLNGMGALAAALVWHLS  255


>gi|289753956|ref|ZP_06513334.1| integral membrane protein [Mycobacterium tuberculosis EAS054]
 gi|289694543|gb|EFD61972.1| integral membrane protein [Mycobacterium tuberculosis EAS054]
Length=256

 Score = 61.2 bits (147),  Expect = 9e-08, Method: Compositional matrix adjust.
 Identities = 50/120 (42%), Positives = 63/120 (53%), Gaps = 18/120 (15%)

Query  102  IPGGTVWAEEAAFRGALATIGARAFGRSGGRILQAGAFGLSHIADA-----------RAT  150
            IP  TV  EE AFRG L     RA+G  G  +  +  FGL HIA +           R  
Sbjct  136  IPLQTVIPEELAFRGVLHGALNRAWGFRGVAVAGSVLFGLWHIATSLGITSSNVGFTRLF  195

Query  151  GEPLV-------LTVLATGIAGWMFGWLADRSGSLAAPLLTHLAINEAGAVAAVLVQRRS  203
            G  ++       L VLATG+AG++F WL  RSGSL AP+  H ++N  GA+AA LV   S
Sbjct  196  GGGIIGLVAGVMLAVLATGVAGFVFSWLRRRSGSLIAPIALHWSLNGMGALAAALVWHLS  255


>gi|339294799|gb|AEJ46910.1| integral membrane protein [Mycobacterium tuberculosis CCDC5079]
 gi|339298425|gb|AEJ50535.1| integral membrane protein [Mycobacterium tuberculosis CCDC5180]
Length=235

 Score = 61.2 bits (147),  Expect = 9e-08, Method: Compositional matrix adjust.
 Identities = 50/120 (42%), Positives = 63/120 (53%), Gaps = 18/120 (15%)

Query  102  IPGGTVWAEEAAFRGALATIGARAFGRSGGRILQAGAFGLSHIADA-----------RAT  150
            IP  TV  EE AFRG L     RA+G  G  +  +  FGL HIA +           R  
Sbjct  115  IPLQTVIPEELAFRGVLHGALNRAWGFRGVAVAGSVLFGLWHIATSLGLTSSNVGFTRLF  174

Query  151  GEPLV-------LTVLATGIAGWMFGWLADRSGSLAAPLLTHLAINEAGAVAAVLVQRRS  203
            G  ++       L VLATG+AG++F WL  RSGSL AP+  H ++N  GA+AA LV   S
Sbjct  175  GGGIIGLVAGVMLAVLATGVAGFVFSWLRRRSGSLIAPIALHWSLNGMGALAAALVWHLS  234


>gi|308231962|ref|ZP_07663961.1| conserved membrane protein [Mycobacterium tuberculosis SUMu001]
 gi|308369543|ref|ZP_07666749.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
 gi|308370841|ref|ZP_07667025.1| conserved membrane protein [Mycobacterium tuberculosis SUMu003]
 19 more sequence titles
 gi|308372073|ref|ZP_07667293.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
 gi|308373255|ref|ZP_07667541.1| conserved membrane protein [Mycobacterium tuberculosis SUMu005]
 gi|308374416|ref|ZP_07667778.1| conserved membrane protein [Mycobacterium tuberculosis SUMu006]
 gi|308375701|ref|ZP_07668091.1| conserved membrane protein [Mycobacterium tuberculosis SUMu007]
 gi|308376845|ref|ZP_07668365.1| conserved membrane protein [Mycobacterium tuberculosis SUMu008]
 gi|308377843|ref|ZP_07668604.1| conserved membrane protein [Mycobacterium tuberculosis SUMu009]
 gi|308379055|ref|ZP_07668888.1| conserved membrane protein [Mycobacterium tuberculosis SUMu010]
 gi|308402698|ref|ZP_07493593.2| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
 gi|308215455|gb|EFO74854.1| conserved membrane protein [Mycobacterium tuberculosis SUMu001]
 gi|308327225|gb|EFP16076.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
 gi|308330648|gb|EFP19499.1| conserved membrane protein [Mycobacterium tuberculosis SUMu003]
 gi|308334494|gb|EFP23345.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
 gi|308338287|gb|EFP27138.1| conserved membrane protein [Mycobacterium tuberculosis SUMu005]
 gi|308341978|gb|EFP30829.1| conserved membrane protein [Mycobacterium tuberculosis SUMu006]
 gi|308345458|gb|EFP34309.1| conserved membrane protein [Mycobacterium tuberculosis SUMu007]
 gi|308349760|gb|EFP38611.1| conserved membrane protein [Mycobacterium tuberculosis SUMu008]
 gi|308354400|gb|EFP43251.1| conserved membrane protein [Mycobacterium tuberculosis SUMu009]
 gi|308358333|gb|EFP47184.1| conserved membrane protein [Mycobacterium tuberculosis SUMu010]
 gi|308365912|gb|EFP54763.1| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
Length=234

 Score = 61.2 bits (147),  Expect = 9e-08, Method: Compositional matrix adjust.
 Identities = 50/120 (42%), Positives = 63/120 (53%), Gaps = 18/120 (15%)

Query  102  IPGGTVWAEEAAFRGALATIGARAFGRSGGRILQAGAFGLSHIADA-----------RAT  150
            IP  TV  EE AFRG L     RA+G  G  +  +  FGL HIA +           R  
Sbjct  114  IPLQTVIPEELAFRGVLHGALNRAWGFRGVAVAGSVLFGLWHIATSLGLTSSNVGFTRLF  173

Query  151  GEPLV-------LTVLATGIAGWMFGWLADRSGSLAAPLLTHLAINEAGAVAAVLVQRRS  203
            G  ++       L VLATG+AG++F WL  RSGSL AP+  H ++N  GA+AA LV   S
Sbjct  174  GGGIIGLVAGVMLAVLATGVAGFVFSWLRRRSGSLIAPIALHWSLNGMGALAAALVWHLS  233


>gi|289762012|ref|ZP_06521390.1| conserved integral membrane protein [Mycobacterium tuberculosis 
GM 1503]
 gi|289709518|gb|EFD73534.1| conserved integral membrane protein [Mycobacterium tuberculosis 
GM 1503]
Length=256

 Score = 60.5 bits (145),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 49/116 (43%), Positives = 62/116 (54%), Gaps = 18/116 (15%)

Query  102  IPGGTVWAEEAAFRGALATIGARAFGRSGGRILQAGAFGLSHIADA-----------RAT  150
            IP  TV  EE AFRG L     RA+G  G  +  +  FGL HIA +           R  
Sbjct  136  IPLQTVIPEELAFRGVLHGALNRAWGFRGVAVAGSVLFGLWHIATSLGLTSSNVGFTRLF  195

Query  151  GEPLV-------LTVLATGIAGWMFGWLADRSGSLAAPLLTHLAINEAGAVAAVLV  199
            G  ++       L VLATG+AG++F WL  RSGSL AP+  H ++N  GA+AA LV
Sbjct  196  GGGIIGLVAGVMLAVLATGVAGFVFSWLRRRSGSLIAPIALHWSLNGMGALAAALV  251


>gi|108799760|ref|YP_639957.1| abortive infection protein [Mycobacterium sp. MCS]
 gi|119868870|ref|YP_938822.1| abortive infection protein [Mycobacterium sp. KMS]
 gi|108770179|gb|ABG08901.1| Abortive infection protein [Mycobacterium sp. MCS]
 gi|119694959|gb|ABL92032.1| Abortive infection protein [Mycobacterium sp. KMS]
Length=244

 Score = 60.5 bits (145),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 49/120 (41%), Positives = 61/120 (51%), Gaps = 18/120 (15%)

Query  102  IPGGTVWAEEAAFRGALATIGARAFGRSGGRILQAGAFGLSHIADARATGEP--------  153
            IP  TV  EE AFRG L     RA+G  G     +  FGL HIA +              
Sbjct  124  IPLQTVIPEELAFRGVLHGALNRAWGFRGVAAAGSLLFGLWHIATSLGLTSSNVGLTRLF  183

Query  154  ----------LVLTVLATGIAGWMFGWLADRSGSLAAPLLTHLAINEAGAVAAVLVQRRS  203
                      +VL V+ATGIAG++F WL  RSGSL AP+  H ++N  GA+AA LV + S
Sbjct  184  GGGVLGTVIGVVLAVVATGIAGFVFTWLRKRSGSLLAPIALHWSLNGMGALAAALVWQLS  243


>gi|126435401|ref|YP_001071092.1| abortive infection protein [Mycobacterium sp. JLS]
 gi|126235201|gb|ABN98601.1| Abortive infection protein [Mycobacterium sp. JLS]
Length=244

 Score = 60.1 bits (144),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 50/120 (42%), Positives = 62/120 (52%), Gaps = 18/120 (15%)

Query  102  IPGGTVWAEEAAFRGALATIGARAFGRSGGRILQAGAFGLSHIADARA------------  149
            IP  TV  EE AFRG L     RA+G  G     +  FGL HIA +              
Sbjct  124  IPLQTVIPEELAFRGVLHGALNRAWGFRGVAAAGSLLFGLWHIATSLGLTSSNVGLTRLF  183

Query  150  ------TGEPLVLTVLATGIAGWMFGWLADRSGSLAAPLLTHLAINEAGAVAAVLVQRRS  203
                  T   +VL V+ATGIAG++F WL  RSGSL AP+  H ++N  GA+AA LV + S
Sbjct  184  GGGVLGTVIGVVLAVVATGIAGFVFTWLRKRSGSLLAPIALHWSLNGMGALAAALVWQLS  243


>gi|183982746|ref|YP_001851037.1| hypothetical protein MMAR_2740 [Mycobacterium marinum M]
 gi|183176072|gb|ACC41182.1| conserved hypothetical membrane protein [Mycobacterium marinum 
M]
Length=254

 Score = 57.4 bits (137),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 47/121 (39%), Positives = 60/121 (50%), Gaps = 18/121 (14%)

Query  102  IPGGTVWAEEAAFRGALATIGARAFGRSGGRILQAGAFGLSHIADARATGEP--------  153
            IP  TV  EE AFRG L     RA+G  G  +  +  FGL H+A +              
Sbjct  134  IPLQTVIPEELAFRGVLHGALNRAWGFRGVALAGSLLFGLWHVATSLGLTSSNVGFTRLF  193

Query  154  ----------LVLTVLATGIAGWMFGWLADRSGSLAAPLLTHLAINEAGAVAAVLVQRRS  203
                      +VL VLATG AG++F WL  RSGSL AP+  H ++N  GA+AA +V   S
Sbjct  194  GGGIVGMVAGVVLAVLATGAAGFVFSWLRRRSGSLIAPIALHWSLNGVGALAAAVVWHLS  253

Query  204  G  204
             
Sbjct  254  N  254


>gi|333990591|ref|YP_004523205.1| hypothetical protein JDM601_1951 [Mycobacterium sp. JDM601]
 gi|333486559|gb|AEF35951.1| integral membrane protein [Mycobacterium sp. JDM601]
Length=240

 Score = 57.0 bits (136),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 49/120 (41%), Positives = 60/120 (50%), Gaps = 18/120 (15%)

Query  102  IPGGTVWAEEAAFRGALATIGARAFGRSGGRILQAGAFGLSHIADARATGEPLV------  155
            IP  TV  EE AFRGAL     RA+G  G     +  FGL H+A +       V      
Sbjct  120  IPLQTVIPEELAFRGALHGALHRAWGFRGVAAAGSLLFGLWHVATSLGLTSSNVGFTRLF  179

Query  156  ------------LTVLATGIAGWMFGWLADRSGSLAAPLLTHLAINEAGAVAAVLVQRRS  203
                        L VLATG AG++F WL  RSGSL AP+  H ++N  GA+AA LV + S
Sbjct  180  GGGFLGMVAGVTLAVLATGAAGFVFSWLRRRSGSLIAPIALHWSLNGVGALAAALVWQLS  239


>gi|296164854|ref|ZP_06847411.1| abortive infection protein [Mycobacterium parascrofulaceum ATCC 
BAA-614]
 gi|295899793|gb|EFG79242.1| abortive infection protein [Mycobacterium parascrofulaceum ATCC 
BAA-614]
Length=254

 Score = 57.0 bits (136),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 66/180 (37%), Positives = 87/180 (49%), Gaps = 30/180 (16%)

Query  45   ATMGLWPPRLWAGLRLGWAAGAAAATAIAATTPVPMVR-LSMSARE------LPASVPVW  97
            A +GL      +GL    AA    A+ IAA   +PM R + ++ R       L AS+ + 
Sbjct  75   ADLGLGREHWKSGLGYALAAVLLVASVIAAGVLLPMTRPMFLNHRYATVSGALIASMVI-  133

Query  98   LVWHIPGGTVWAEEAAFRGALATIGARAFGRSGGRILQAGAFGLSHIADARA-TGEPLVL  156
                IP  TV  EE AFRG L     RA+G  G  +  +  FGL H+A +   T   + L
Sbjct  134  ----IPLQTVIPEELAFRGVLHGALHRAWGFRGVALAGSLLFGLWHVATSLGLTSGNVGL  189

Query  157  T-----------------VLATGIAGWMFGWLADRSGSLAAPLLTHLAINEAGAVAAVLV  199
            T                 VLATG AG++F WL  RSGSL AP+  H ++N  GA+AA LV
Sbjct  190  TRIFGGGVMGMLAGVTAAVLATGAAGFVFSWLRRRSGSLIAPIALHWSLNGLGALAAALV  249


>gi|240173353|ref|ZP_04752011.1| hypothetical protein MkanA1_28831 [Mycobacterium kansasii ATCC 
12478]
Length=258

 Score = 56.6 bits (135),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 48/116 (42%), Positives = 61/116 (53%), Gaps = 18/116 (15%)

Query  102  IPGGTVWAEEAAFRGALATIGARAFGRSGGRILQAGAFGLSHIADA-----------RAT  150
            IP  TV  EE AFRG L     RA+G  G  +  +  FGL H+A +           R  
Sbjct  138  IPLQTVIPEELAFRGVLHGALNRAWGFRGVAMAGSLLFGLWHVATSLGLTSTNVGFTRLF  197

Query  151  GEPLV-------LTVLATGIAGWMFGWLADRSGSLAAPLLTHLAINEAGAVAAVLV  199
            G  +V       L VLATG AG++F WL  RSGSL AP+  H ++N  GA+AA +V
Sbjct  198  GGGIVGMLAGVTLAVLATGAAGFVFSWLRRRSGSLIAPIALHWSLNGLGALAAAVV  253


>gi|169627601|ref|YP_001701250.1| hypothetical protein MAB_0497 [Mycobacterium abscessus ATCC 19977]
 gi|169239568|emb|CAM60596.1| Conserved hypothetical protein (abortive infection protein?) 
[Mycobacterium abscessus]
Length=248

 Score = 56.2 bits (134),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 48/116 (42%), Positives = 60/116 (52%), Gaps = 18/116 (15%)

Query  102  IPGGTVWAEEAAFRGALATIGARAFGRSGGRILQAGAFGLSHIADARA-TGEPLVLT---  157
            IP  TV  EE AFRG L    ARA+G  G   + +  FG  HIA +   T   + LT   
Sbjct  129  IPLQTVIPEELAFRGVLHGTMARAWGFRGVAAVGSLLFGFWHIATSLGLTTGNVGLTRLL  188

Query  158  --------------VLATGIAGWMFGWLADRSGSLAAPLLTHLAINEAGAVAAVLV  199
                          V+AT IAG++F WL  RSGSL AP+  H ++N  G +AAVLV
Sbjct  189  GVGLWAQIAGVAGAVVATAIAGFVFTWLRRRSGSLLAPIALHWSLNGMGVLAAVLV  244


>gi|342861240|ref|ZP_08717888.1| hypothetical protein MCOL_20251 [Mycobacterium colombiense CECT 
3035]
 gi|342131140|gb|EGT84421.1| hypothetical protein MCOL_20251 [Mycobacterium colombiense CECT 
3035]
Length=253

 Score = 54.7 bits (130),  Expect = 8e-06, Method: Compositional matrix adjust.
 Identities = 49/120 (41%), Positives = 61/120 (51%), Gaps = 18/120 (15%)

Query  102  IPGGTVWAEEAAFRGALATIGARAFGRSGGRILQAGAFGLSHIADA-----------RAT  150
            IP  TV  EE AFRG L     RA+G  G  +  +  FGL H+A +           R  
Sbjct  133  IPLQTVIPEELAFRGVLHGALNRAWGFRGVALAGSLLFGLWHVATSLGLTSTNVGFTRLF  192

Query  151  GEPLVLT-------VLATGIAGWMFGWLADRSGSLAAPLLTHLAINEAGAVAAVLVQRRS  203
            G  +V         VLATG AG++F WL  RSGSL AP+  H ++N  GA+AA LV   S
Sbjct  193  GGGIVGMMAGVTGAVLATGAAGFVFSWLRRRSGSLIAPIALHWSLNGLGALAAALVWHLS  252


>gi|118464072|ref|YP_882042.1| caax amino protease [Mycobacterium avium 104]
 gi|254775332|ref|ZP_05216848.1| caax amino protease family protein [Mycobacterium avium subsp. 
avium ATCC 25291]
 gi|118165359|gb|ABK66256.1| caax amino protease family protein [Mycobacterium avium 104]
Length=251

 Score = 53.1 bits (126),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 46/116 (40%), Positives = 58/116 (50%), Gaps = 18/116 (15%)

Query  102  IPGGTVWAEEAAFRGALATIGARAFGRSGGRILQAGAFGLSHIADARA-TGEPLVLT---  157
            IP  TV  EE AFRG L     RA+G  G  +  +  FGL H+A +   T   +  T   
Sbjct  131  IPVQTVIPEELAFRGVLHGALNRAWGFRGVALAGSLLFGLWHVATSFGLTSGNVGFTRLF  190

Query  158  --------------VLATGIAGWMFGWLADRSGSLAAPLLTHLAINEAGAVAAVLV  199
                          VLATG AG++F WL  RSGSL AP+  H ++N  GA+AA  V
Sbjct  191  GGGMVGMMAGVTGAVLATGAAGFVFSWLRRRSGSLIAPIALHWSLNGLGALAAAFV  246


>gi|336457508|gb|EGO36514.1| CAAX amino terminal protease family [Mycobacterium avium subsp. 
paratuberculosis S397]
Length=188

 Score = 53.1 bits (126),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 46/116 (40%), Positives = 58/116 (50%), Gaps = 18/116 (15%)

Query  102  IPGGTVWAEEAAFRGALATIGARAFGRSGGRILQAGAFGLSHIADARA-TGEPLVLT---  157
            IP  TV  EE AFRG L     RA+G  G  +  +  FGL H+A +   T   +  T   
Sbjct  68   IPVQTVIPEELAFRGVLHGALNRAWGFRGVALAGSLLFGLWHVATSFGLTSGNVGFTRLF  127

Query  158  --------------VLATGIAGWMFGWLADRSGSLAAPLLTHLAINEAGAVAAVLV  199
                          VLATG AG++F WL  RSGSL AP+  H ++N  GA+AA  V
Sbjct  128  GGGMVGMMAGVTGAVLATGAAGFVFSWLRRRSGSLIAPIALHWSLNGLGALAAAFV  183


>gi|118473489|ref|YP_887915.1| integral membrane protein [Mycobacterium smegmatis str. MC2 155]
 gi|118174776|gb|ABK75672.1| probable conserved integral membrane protein [Mycobacterium smegmatis 
str. MC2 155]
Length=249

 Score = 50.8 bits (120),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 47/120 (40%), Positives = 59/120 (50%), Gaps = 18/120 (15%)

Query  102  IPGGTVWAEEAAFRGALATIGARAFGRSGGRILQAGAFGLSHIADARA-TGEPLVLTVL-  159
            IP  TV  EE AFRG L     RA+G  G     +  FG+ HIA +   T   +  T L 
Sbjct  129  IPLQTVIPEELAFRGVLHGALDRAWGFRGVAAAGSLLFGMWHIATSLGLTSSNVGFTRLF  188

Query  160  ----------------ATGIAGWMFGWLADRSGSLAAPLLTHLAINEAGAVAAVLVQRRS  203
                            ATGIAG++F WL  RSGSL AP+  H ++N  GA+AA +V   S
Sbjct  189  GGGILGTVAGVVLAVVATGIAGFVFSWLRRRSGSLLAPIALHWSLNGMGALAAAVVWHIS  248


>gi|319949528|ref|ZP_08023578.1| hypothetical protein ES5_08761 [Dietzia cinnamea P4]
 gi|319436818|gb|EFV91888.1| hypothetical protein ES5_08761 [Dietzia cinnamea P4]
Length=250

 Score = 50.8 bits (120),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 55/148 (38%), Positives = 70/148 (48%), Gaps = 22/148 (14%)

Query  72   IAATTPVPMVRLSMSARELPASVPVWLVWHIPGGTVWAEEAAFRGALATIGARAFGRSGG  131
            I AT+P     LS    +L  +V   LV  IP  TV  EE AFRG L     R FG +G 
Sbjct  103  IPATSPF---FLSERYSDLRMAVFSALVL-IPLMTVLPEEFAFRGVLQGALERTFGTTGV  158

Query  132  RILQAGAFGLSHI-------------ADARATG-----EPLVLTVLATGIAGWMFGWLAD  173
             ++ + +FGL H+             A+   TG       + L V AT +AG  F W+  
Sbjct  159  FVIGSLSFGLWHVTSSLGLTAGNAGLAEVLGTGPVGQLAGIGLAVTATSVAGAGFIWIRR  218

Query  174  RSGSLAAPLLTHLAINEAGAVAAVLVQR  201
            RS SL AP+  H A N  GA+AA L  R
Sbjct  219  RSRSLLAPIGLHWAFNAVGALAAALTWR  246


>gi|343928507|ref|ZP_08767955.1| hypothetical protein GOALK_117_01130 [Gordonia alkanivorans NBRC 
16433]
 gi|343761692|dbj|GAA14881.1| hypothetical protein GOALK_117_01130 [Gordonia alkanivorans NBRC 
16433]
Length=236

 Score = 50.4 bits (119),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 41/113 (37%), Positives = 54/113 (48%), Gaps = 18/113 (15%)

Query  102  IPGGTVWAEEAAFRGALATIGARAFGRSGGRILQAGAFGLSHI-------------ADAR  148
            IP  T   EE  FRG L     R  G +G  +  A AFGL HI             +D  
Sbjct  117  IPLQTAIPEELMFRGVLQGTLGRLCGPTGTLVYGAVAFGLWHILSSTGLTEGNEGLSDTL  176

Query  149  ATGEPLVLT-----VLATGIAGWMFGWLADRSGSLAAPLLTHLAINEAGAVAA  196
             +G    +      V+ATG+AG++ GWL  R+ SL AP+  H A+N  GA+ A
Sbjct  177  GSGTVAQVAGIAGAVVATGLAGFVLGWLRQRTTSLLAPIALHWALNATGAIGA  229


>gi|41407670|ref|NP_960506.1| hypothetical protein MAP1572c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41396023|gb|AAS03889.1| hypothetical protein MAP_1572c [Mycobacterium avium subsp. paratuberculosis 
K-10]
Length=251

 Score = 50.1 bits (118),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 45/116 (39%), Positives = 57/116 (50%), Gaps = 18/116 (15%)

Query  102  IPGGTVWAEEAAFRGALATIGARAFGRSGGRILQAGAFGLSHIADARA-TGEPLVLT---  157
            IP  TV  EE AFRG L     RA+G  G  +  +  FGL H+A +   T   +  T   
Sbjct  131  IPVQTVIPEELAFRGVLHGALNRAWGFRGVALAGSLLFGLWHVATSFGLTSGNVGFTRLF  190

Query  158  --------------VLATGIAGWMFGWLADRSGSLAAPLLTHLAINEAGAVAAVLV  199
                          VLATG AG++F W   RSGSL AP+  H ++N  GA+AA  V
Sbjct  191  GGGMVGMMAGVTGAVLATGAAGFVFSWPRRRSGSLIAPIALHWSLNGLGALAAAFV  246


>gi|145223928|ref|YP_001134606.1| abortive infection protein [Mycobacterium gilvum PYR-GCK]
 gi|145216414|gb|ABP45818.1| Abortive infection protein [Mycobacterium gilvum PYR-GCK]
Length=253

 Score = 49.7 bits (117),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 47/120 (40%), Positives = 58/120 (49%), Gaps = 18/120 (15%)

Query  102  IPGGTVWAEEAAFRGALATIGARAFGRSGGRILQAGAFGLSHIAD-----ARATGEPLVL  156
            IP  TV  EE AFRG L     +A+G  G     +  FGL HIA      A   G   +L
Sbjct  134  IPLQTVIPEELAFRGVLHGALEQAWGWRGVAAAGSLLFGLWHIATSLGLTASNAGFTKIL  193

Query  157  -------------TVLATGIAGWMFGWLADRSGSLAAPLLTHLAINEAGAVAAVLVQRRS  203
                          V+AT  AG++F WL  RSGSL AP+  H ++N  GA+AA LV   S
Sbjct  194  GGGVFGMVAGVVGAVIATAAAGFVFSWLRRRSGSLIAPIALHWSLNGLGALAAALVWHLS  253


>gi|120404049|ref|YP_953878.1| abortive infection protein [Mycobacterium vanbaalenii PYR-1]
 gi|119956867|gb|ABM13872.1| Abortive infection protein [Mycobacterium vanbaalenii PYR-1]
Length=253

 Score = 49.7 bits (117),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 47/120 (40%), Positives = 57/120 (48%), Gaps = 18/120 (15%)

Query  102  IPGGTVWAEEAAFRGALATIGARAFGRSGGRILQAGAFGLSHIAD-----ARATGEPLVL  156
            IP  TV  EE AFRG L     RA+G  G     +  FGL HIA      A   G   +L
Sbjct  134  IPLQTVIPEELAFRGVLHGALDRAWGWRGVAAAGSLLFGLWHIATSLGLTASNVGFTKIL  193

Query  157  TV-------------LATGIAGWMFGWLADRSGSLAAPLLTHLAINEAGAVAAVLVQRRS  203
                           +AT  AG++F WL  RSGSL AP+  H ++N  GA+AA LV   S
Sbjct  194  GGGVFGMVVGVVGAVIATAAAGFVFTWLRRRSGSLIAPIALHWSLNGLGALAAALVWHLS  253



Lambda     K      H
   0.323    0.135    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 242769087144




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40