BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0818
Length=255
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607958|ref|NP_215333.1| transcriptional regulatory protein ... 498 4e-139
gi|15840231|ref|NP_335268.1| transcriptional regulator [Mycobact... 496 1e-138
gi|298524308|ref|ZP_07011717.1| transcriptional regulatory prote... 496 1e-138
gi|254363756|ref|ZP_04979802.1| transcriptional regulatory prote... 496 2e-138
gi|326904962|gb|EGE51895.1| transcriptional regulator [Mycobacte... 496 2e-138
gi|31792006|ref|NP_854499.1| transcriptional regulatory protein ... 494 5e-138
gi|340625833|ref|YP_004744285.1| transcriptional regulatory prot... 493 1e-137
gi|240171892|ref|ZP_04750551.1| transcriptional regulatory prote... 441 7e-122
gi|296166424|ref|ZP_06848856.1| transcriptional regulator [Mycob... 436 2e-120
gi|118616284|ref|YP_904616.1| transcriptional regulatory protein... 431 5e-119
gi|183984833|ref|YP_001853124.1| transcriptional regulatory prot... 431 6e-119
gi|342860295|ref|ZP_08716946.1| transcriptional regulator [Mycob... 426 2e-117
gi|254821033|ref|ZP_05226034.1| transcriptional regulatory prote... 423 1e-116
gi|41406747|ref|NP_959583.1| hypothetical protein MAP0649 [Mycob... 406 2e-111
gi|315442681|ref|YP_004075560.1| response regulator with CheY-li... 382 3e-104
gi|118472805|ref|YP_890012.1| transcriptional regulatory protein... 380 8e-104
gi|108801488|ref|YP_641685.1| response regulator receiver protei... 380 1e-103
gi|145222242|ref|YP_001132920.1| response regulator receiver pro... 372 2e-101
gi|120406045|ref|YP_955874.1| response regulator receiver protei... 365 3e-99
gi|333992181|ref|YP_004524795.1| transcriptional regulator [Myco... 358 5e-97
gi|312138323|ref|YP_004005659.1| two component system response r... 356 2e-96
gi|54022565|ref|YP_116807.1| putative transcriptional regulator ... 356 2e-96
gi|226364352|ref|YP_002782134.1| transcriptional regulator [Rhod... 342 2e-92
gi|226308293|ref|YP_002768253.1| transcriptional regulator [Rhod... 342 2e-92
gi|111021831|ref|YP_704803.1| transcriptional regulator [Rhodoco... 342 2e-92
gi|333918420|ref|YP_004492001.1| putative transcriptional regula... 341 6e-92
gi|343926095|ref|ZP_08765607.1| putative transcriptional regulat... 340 1e-91
gi|169627845|ref|YP_001701494.1| transcriptional regulatory prot... 336 2e-90
gi|262203794|ref|YP_003275002.1| transcriptional regulator [Gord... 335 5e-90
gi|296141220|ref|YP_003648463.1| winged helix family two compone... 330 2e-88
gi|256380805|ref|YP_003104465.1| winged helix family two compone... 320 2e-85
gi|324999029|ref|ZP_08120141.1| two component transcriptional re... 305 3e-81
gi|326384905|ref|ZP_08206580.1| putative two component transcrip... 305 4e-81
gi|331694341|ref|YP_004330580.1| winged helix family transcripti... 305 6e-81
gi|134103524|ref|YP_001109185.1| transcriptional regulator [Sacc... 300 1e-79
gi|317509394|ref|ZP_07967013.1| transcriptional regulatory prote... 300 1e-79
gi|26278957|gb|AAN77733.1| transcription regulator GlnR [Amycola... 300 2e-79
gi|300790809|ref|YP_003771100.1| GlnR family transcriptional reg... 299 2e-79
gi|302531004|ref|ZP_07283346.1| transcription regulator GlnR [St... 291 4e-77
gi|269124858|ref|YP_003298228.1| putative winged helix family tw... 289 2e-76
gi|271962447|ref|YP_003336643.1| response regulator receiver pro... 289 3e-76
gi|291438764|ref|ZP_06578154.1| two-component system response re... 286 1e-75
gi|302520782|ref|ZP_07273124.1| two-component system response re... 286 1e-75
gi|333025495|ref|ZP_08453559.1| putative transcriptional regulat... 286 1e-75
gi|302559901|ref|ZP_07312243.1| transcriptional regulatory prote... 286 2e-75
gi|295837511|ref|ZP_06824444.1| transcriptional regulatory prote... 286 2e-75
gi|258655089|ref|YP_003204245.1| winged helix family two compone... 286 3e-75
gi|329936248|ref|ZP_08286041.1| transcriptional regulatory prote... 285 4e-75
gi|296268442|ref|YP_003651074.1| putative winged helix family tw... 285 4e-75
gi|297200649|ref|ZP_06918046.1| two-component system response re... 285 5e-75
>gi|15607958|ref|NP_215333.1| transcriptional regulatory protein [Mycobacterium tuberculosis
H37Rv]
gi|148660596|ref|YP_001282119.1| transcriptional regulator [Mycobacterium tuberculosis H37Ra]
gi|148822024|ref|YP_001286778.1| transcriptional regulatory protein [Mycobacterium tuberculosis
F11]
23 more sequence titles
Length=255
Score = 498 bits (1281), Expect = 4e-139, Method: Compositional matrix adjust.
Identities = 254/255 (99%), Positives = 255/255 (100%), Gaps = 0/255 (0%)
Query 1 LLELLLLTSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGL 60
+LELLLLTSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGL
Sbjct 1 MLELLLLTSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGL 60
Query 61 CRLLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLAD 120
CRLLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLAD
Sbjct 61 CRLLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLAD 120
Query 121 QESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWG 180
QESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWG
Sbjct 121 QESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWG 180
Query 181 YDFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGRPPAADPDDEDADPG 240
YDFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGRPPAADPDDEDADPG
Sbjct 181 YDFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGRPPAADPDDEDADPG 240
Query 241 RDGMQEPLVDPLRSQ 255
RDGMQEPLVDPLRSQ
Sbjct 241 RDGMQEPLVDPLRSQ 255
>gi|15840231|ref|NP_335268.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551]
gi|13880388|gb|AAK45082.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551]
Length=268
Score = 496 bits (1277), Expect = 1e-138, Method: Compositional matrix adjust.
Identities = 255/255 (100%), Positives = 255/255 (100%), Gaps = 0/255 (0%)
Query 1 LLELLLLTSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGL 60
LLELLLLTSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGL
Sbjct 14 LLELLLLTSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGL 73
Query 61 CRLLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLAD 120
CRLLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLAD
Sbjct 74 CRLLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLAD 133
Query 121 QESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWG 180
QESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWG
Sbjct 134 QESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWG 193
Query 181 YDFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGRPPAADPDDEDADPG 240
YDFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGRPPAADPDDEDADPG
Sbjct 194 YDFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGRPPAADPDDEDADPG 253
Query 241 RDGMQEPLVDPLRSQ 255
RDGMQEPLVDPLRSQ
Sbjct 254 RDGMQEPLVDPLRSQ 268
>gi|298524308|ref|ZP_07011717.1| transcriptional regulatory protein [Mycobacterium tuberculosis
94_M4241A]
gi|306794860|ref|ZP_07433162.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005]
gi|308231645|ref|ZP_07413279.2| transcriptional regulator [Mycobacterium tuberculosis SUMu001]
26 more sequence titles
Length=254
Score = 496 bits (1277), Expect = 1e-138, Method: Compositional matrix adjust.
Identities = 253/254 (99%), Positives = 254/254 (100%), Gaps = 0/254 (0%)
Query 2 LELLLLTSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGLC 61
+ELLLLTSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGLC
Sbjct 1 MELLLLTSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGLC 60
Query 62 RLLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLADQ 121
RLLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLADQ
Sbjct 61 RLLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLADQ 120
Query 122 ESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGY 181
ESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGY
Sbjct 121 ESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGY 180
Query 182 DFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGRPPAADPDDEDADPGR 241
DFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGRPPAADPDDEDADPGR
Sbjct 181 DFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGRPPAADPDDEDADPGR 240
Query 242 DGMQEPLVDPLRSQ 255
DGMQEPLVDPLRSQ
Sbjct 241 DGMQEPLVDPLRSQ 254
>gi|254363756|ref|ZP_04979802.1| transcriptional regulatory protein [Mycobacterium tuberculosis
str. Haarlem]
gi|134149270|gb|EBA41315.1| transcriptional regulatory protein [Mycobacterium tuberculosis
str. Haarlem]
Length=255
Score = 496 bits (1276), Expect = 2e-138, Method: Compositional matrix adjust.
Identities = 253/255 (99%), Positives = 254/255 (99%), Gaps = 0/255 (0%)
Query 1 LLELLLLTSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGL 60
+LELLLLTSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGL
Sbjct 1 MLELLLLTSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGL 60
Query 61 CRLLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLAD 120
CRLLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLAD
Sbjct 61 CRLLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLAD 120
Query 121 QESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWG 180
QESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWG
Sbjct 121 QESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWG 180
Query 181 YDFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGRPPAADPDDEDADPG 240
YDFFGGTRTVDVHVRRLRAKLGPEHEALIG VRNVGYKAVRPARGRPPAADPDDEDADPG
Sbjct 181 YDFFGGTRTVDVHVRRLRAKLGPEHEALIGAVRNVGYKAVRPARGRPPAADPDDEDADPG 240
Query 241 RDGMQEPLVDPLRSQ 255
RDGMQEPLVDPLRSQ
Sbjct 241 RDGMQEPLVDPLRSQ 255
>gi|326904962|gb|EGE51895.1| transcriptional regulator [Mycobacterium tuberculosis W-148]
Length=255
Score = 496 bits (1276), Expect = 2e-138, Method: Compositional matrix adjust.
Identities = 253/255 (99%), Positives = 254/255 (99%), Gaps = 0/255 (0%)
Query 1 LLELLLLTSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGL 60
+LELLLLTSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVD RNDLSSGRGL
Sbjct 1 MLELLLLTSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDERNDLSSGRGL 60
Query 61 CRLLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLAD 120
CRLLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLAD
Sbjct 61 CRLLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLAD 120
Query 121 QESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWG 180
QESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWG
Sbjct 121 QESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWG 180
Query 181 YDFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGRPPAADPDDEDADPG 240
YDFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGRPPAADPDDEDADPG
Sbjct 181 YDFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGRPPAADPDDEDADPG 240
Query 241 RDGMQEPLVDPLRSQ 255
RDGMQEPLVDPLRSQ
Sbjct 241 RDGMQEPLVDPLRSQ 255
>gi|31792006|ref|NP_854499.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97]
gi|121636742|ref|YP_976965.1| transcriptional regulatory protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224989213|ref|YP_002643900.1| transcriptional regulatory protein [Mycobacterium bovis BCG str.
Tokyo 172]
18 more sequence titles
Length=255
Score = 494 bits (1272), Expect = 5e-138, Method: Compositional matrix adjust.
Identities = 253/255 (99%), Positives = 254/255 (99%), Gaps = 0/255 (0%)
Query 1 LLELLLLTSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGL 60
+LELLLLTSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGL
Sbjct 1 MLELLLLTSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGL 60
Query 61 CRLLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLAD 120
CRLLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILL STGPAEIDARLRLVVGRRGDLAD
Sbjct 61 CRLLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLPSTGPAEIDARLRLVVGRRGDLAD 120
Query 121 QESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWG 180
QESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWG
Sbjct 121 QESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWG 180
Query 181 YDFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGRPPAADPDDEDADPG 240
YDFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGRPPAADPDDEDADPG
Sbjct 181 YDFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGRPPAADPDDEDADPG 240
Query 241 RDGMQEPLVDPLRSQ 255
RDGMQEPLVDPLRSQ
Sbjct 241 RDGMQEPLVDPLRSQ 255
>gi|340625833|ref|YP_004744285.1| transcriptional regulatory protein [Mycobacterium canettii CIPT
140010059]
gi|340004023|emb|CCC43159.1| transcriptional regulatory protein [Mycobacterium canettii CIPT
140010059]
Length=255
Score = 493 bits (1268), Expect = 1e-137, Method: Compositional matrix adjust.
Identities = 252/255 (99%), Positives = 253/255 (99%), Gaps = 0/255 (0%)
Query 1 LLELLLLTSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGL 60
+LELLLLTSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGL
Sbjct 1 MLELLLLTSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGL 60
Query 61 CRLLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLAD 120
CRLLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILL STGPAEIDARLRLVVGRRGDLAD
Sbjct 61 CRLLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLPSTGPAEIDARLRLVVGRRGDLAD 120
Query 121 QESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWG 180
QESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWG
Sbjct 121 QESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWG 180
Query 181 YDFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGRPPAADPDDEDADPG 240
YDFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGRPPA DPDDEDADPG
Sbjct 181 YDFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGRPPAVDPDDEDADPG 240
Query 241 RDGMQEPLVDPLRSQ 255
RDGMQEPLVDPLRSQ
Sbjct 241 RDGMQEPLVDPLRSQ 255
>gi|240171892|ref|ZP_04750551.1| transcriptional regulatory protein [Mycobacterium kansasii ATCC
12478]
Length=254
Score = 441 bits (1133), Expect = 7e-122, Method: Compositional matrix adjust.
Identities = 225/254 (89%), Positives = 235/254 (93%), Gaps = 0/254 (0%)
Query 2 LELLLLTSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGLC 61
+ELLLLTSELYPDPVLP+LSLL H VRTAP EASSLLEAGNADAVLVDARNDLS+ RGLC
Sbjct 1 MELLLLTSELYPDPVLPSLSLLSHNVRTAPPEASSLLEAGNADAVLVDARNDLSAARGLC 60
Query 62 RLLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLADQ 121
RLLS+ GRS PVLAVV+EGGLVAVSADWGLDEILL STGPAEIDARLRLVVGRRG L+DQ
Sbjct 61 RLLSTAGRSAPVLAVVTEGGLVAVSADWGLDEILLPSTGPAEIDARLRLVVGRRGGLSDQ 120
Query 122 ESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGY 181
E +GKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGY
Sbjct 121 EGVGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGY 180
Query 182 DFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGRPPAADPDDEDADPGR 241
DFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGR A+PDDE + P
Sbjct 181 DFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGRTAVAEPDDEGSGPDS 240
Query 242 DGMQEPLVDPLRSQ 255
Q+PLVDPLRSQ
Sbjct 241 ADFQDPLVDPLRSQ 254
>gi|296166424|ref|ZP_06848856.1| transcriptional regulator [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295898185|gb|EFG77759.1| transcriptional regulator [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=255
Score = 436 bits (1121), Expect = 2e-120, Method: Compositional matrix adjust.
Identities = 225/255 (89%), Positives = 238/255 (94%), Gaps = 1/255 (0%)
Query 2 LELLLLTSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGLC 61
+ELLLLTSEL+PDPVLP+LSLLPHTVRTAPAE SSLLEAG ADAVLVDAR DLSS RGLC
Sbjct 1 MELLLLTSELHPDPVLPSLSLLPHTVRTAPAEPSSLLEAGTADAVLVDARTDLSSARGLC 60
Query 62 RLLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLADQ 121
RLLS+ GRS+PVLAVVSEGGLVAVSADWGLDEILL STGPAEIDARLRLV+GRRG LADQ
Sbjct 61 RLLSTAGRSVPVLAVVSEGGLVAVSADWGLDEILLPSTGPAEIDARLRLVIGRRGGLADQ 120
Query 122 ESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGY 181
ES GKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGY
Sbjct 121 ESAGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGY 180
Query 182 DFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGRPPAADPDDEDA-DPG 240
DFFGGTRTVDVHVRRLRAKLGPE+EALIGTVRNVGYKAVRPARGR P A+P+D +A +
Sbjct 181 DFFGGTRTVDVHVRRLRAKLGPEYEALIGTVRNVGYKAVRPARGRAPIAEPEDGEAVESD 240
Query 241 RDGMQEPLVDPLRSQ 255
+ +QEPL DPLRSQ
Sbjct 241 SEDLQEPLGDPLRSQ 255
>gi|118616284|ref|YP_904616.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
gi|118568394|gb|ABL03145.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
Length=255
Score = 431 bits (1108), Expect = 5e-119, Method: Compositional matrix adjust.
Identities = 218/243 (90%), Positives = 227/243 (94%), Gaps = 0/243 (0%)
Query 12 YPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGLCRLLSSTGRSI 71
YPDPVLP+LSLLPH VRTAPAEASSLLEAGNADAVL DARNDLS+ RGLCRLLS+ GRS+
Sbjct 12 YPDPVLPSLSLLPHNVRTAPAEASSLLEAGNADAVLADARNDLSAARGLCRLLSTAGRSV 71
Query 72 PVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLADQESLGKVSLGE 131
PVLAVV+EGGLVAVSADWGLDEILL STGPAEIDARLRLVVGRRG ADQES+GKVSLGE
Sbjct 72 PVLAVVNEGGLVAVSADWGLDEILLPSTGPAEIDARLRLVVGRRGGQADQESVGKVSLGE 131
Query 132 LVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGYDFFGGTRTVD 191
LVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGYDFFGGTRTVD
Sbjct 132 LVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGYDFFGGTRTVD 191
Query 192 VHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGRPPAADPDDEDADPGRDGMQEPLVDP 251
VHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGR A D DDE+ + DG +EPLVDP
Sbjct 192 VHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGRSVAVDADDEETESDHDGYEEPLVDP 251
Query 252 LRS 254
LRS
Sbjct 252 LRS 254
>gi|183984833|ref|YP_001853124.1| transcriptional regulatory protein [Mycobacterium marinum M]
gi|183178159|gb|ACC43269.1| transcriptional regulatory protein [Mycobacterium marinum M]
Length=264
Score = 431 bits (1108), Expect = 6e-119, Method: Compositional matrix adjust.
Identities = 219/243 (91%), Positives = 229/243 (95%), Gaps = 0/243 (0%)
Query 12 YPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGLCRLLSSTGRSI 71
YPDPVLP+LSLLPH VRTAPAEASSLLEAGNADAVLVDARNDLS+ RGLCRLLS+ GRS+
Sbjct 21 YPDPVLPSLSLLPHNVRTAPAEASSLLEAGNADAVLVDARNDLSAARGLCRLLSTAGRSV 80
Query 72 PVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLADQESLGKVSLGE 131
PVLAVV+EGGLVAVSADWGLDEILL STGPAEIDARLRLVVGRRG ADQES+GKVSLGE
Sbjct 81 PVLAVVNEGGLVAVSADWGLDEILLPSTGPAEIDARLRLVVGRRGGQADQESVGKVSLGE 140
Query 132 LVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGYDFFGGTRTVD 191
LVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGYDFFGGTRTVD
Sbjct 141 LVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGYDFFGGTRTVD 200
Query 192 VHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGRPPAADPDDEDADPGRDGMQEPLVDP 251
VHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGR A + DDE+A+ DG +EPLVDP
Sbjct 201 VHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGRSVAVEADDEEAESDHDGYEEPLVDP 260
Query 252 LRS 254
LRS
Sbjct 261 LRS 263
>gi|342860295|ref|ZP_08716946.1| transcriptional regulator [Mycobacterium colombiense CECT 3035]
gi|342131950|gb|EGT85191.1| transcriptional regulator [Mycobacterium colombiense CECT 3035]
Length=257
Score = 426 bits (1095), Expect = 2e-117, Method: Compositional matrix adjust.
Identities = 218/257 (85%), Positives = 233/257 (91%), Gaps = 3/257 (1%)
Query 2 LELLLLTSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGLC 61
+ELLLLTSEL+PDPVLP+LSLLPH VRTAP E SSLLEAG ADAV+VDAR DLSS RGLC
Sbjct 1 MELLLLTSELHPDPVLPSLSLLPHAVRTAPPEPSSLLEAGTADAVIVDARTDLSSARGLC 60
Query 62 RLLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLADQ 121
RLLS+ GRS+PVLAVVSEGGLVAVS+DWGLDEILL +TGPAE+DARLRLVVGRRG LADQ
Sbjct 61 RLLSTAGRSVPVLAVVSEGGLVAVSSDWGLDEILLPTTGPAEVDARLRLVVGRRGGLADQ 120
Query 122 ESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGY 181
ES GKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGY
Sbjct 121 ESAGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGY 180
Query 182 DFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGRPPAADPD---DEDAD 238
DFFGGTRTVDVHVRRLRAKLGPE+EALIGTVRNVGYKAVRPARGR P A+PD + D +
Sbjct 181 DFFGGTRTVDVHVRRLRAKLGPEYEALIGTVRNVGYKAVRPARGRAPVAEPDEAGETDVE 240
Query 239 PGRDGMQEPLVDPLRSQ 255
Q+PLVDPL +Q
Sbjct 241 SESQDAQDPLVDPLHTQ 257
>gi|254821033|ref|ZP_05226034.1| transcriptional regulatory protein [Mycobacterium intracellulare
ATCC 13950]
Length=262
Score = 423 bits (1088), Expect = 1e-116, Method: Compositional matrix adjust.
Identities = 221/262 (85%), Positives = 234/262 (90%), Gaps = 8/262 (3%)
Query 2 LELLLLTSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGLC 61
+ELLLLTSEL+PDPVLP+LSLLPH VRTAP E +SLLEAG ADAV+VDAR DLSS RGLC
Sbjct 1 MELLLLTSELHPDPVLPSLSLLPHPVRTAPPEPASLLEAGTADAVIVDARTDLSSARGLC 60
Query 62 RLLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLADQ 121
RLLS+ GRS+PVLAVVSEGGLVA+SADWGLDEILL +TGPAEIDARLRLVVGRRG LADQ
Sbjct 61 RLLSTAGRSVPVLAVVSEGGLVAISADWGLDEILLPTTGPAEIDARLRLVVGRRGGLADQ 120
Query 122 ESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGY 181
ES GKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGY
Sbjct 121 ESAGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGY 180
Query 182 DFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGRPPAADPDDEDA-DPG 240
DFFGGTRTVDVHVRRLRAKLG EHEALIGTVRNVGYKAVRPARGR PAAD D D D G
Sbjct 181 DFFGGTRTVDVHVRRLRAKLGSEHEALIGTVRNVGYKAVRPARGRAPAADSSDPDGTDGG 240
Query 241 RDG-------MQEPLVDPLRSQ 255
G +++PLVDPL +Q
Sbjct 241 ESGAESDSEDVKDPLVDPLHTQ 262
>gi|41406747|ref|NP_959583.1| hypothetical protein MAP0649 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118465464|ref|YP_880035.1| transcriptional regulator [Mycobacterium avium 104]
gi|254773700|ref|ZP_05215216.1| transcriptional regulatory protein [Mycobacterium avium subsp.
avium ATCC 25291]
gi|41395097|gb|AAS02966.1| hypothetical protein MAP_0649 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118166751|gb|ABK67648.1| transcriptional regulatory protein [Mycobacterium avium 104]
gi|336458335|gb|EGO37314.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding [Mycobacterium avium subsp. paratuberculosis
S397]
Length=260
Score = 406 bits (1043), Expect = 2e-111, Method: Compositional matrix adjust.
Identities = 212/260 (82%), Positives = 230/260 (89%), Gaps = 6/260 (2%)
Query 2 LELLLLTSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGLC 61
+ELLLLT EL+PDPVLP+LSLL HTVRTAP E SSLLEAG ADAV+VDAR DLSS RGLC
Sbjct 1 MELLLLTPELHPDPVLPSLSLLAHTVRTAPPEPSSLLEAGTADAVIVDARTDLSSARGLC 60
Query 62 RLLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLADQ 121
RLLS+ GRS+PVLAVVSEGGLVAV++DWGLDEILL +TGPAE+DARLRLVVGRRG LADQ
Sbjct 61 RLLSTAGRSVPVLAVVSEGGLVAVNSDWGLDEILLPTTGPAEVDARLRLVVGRRGGLADQ 120
Query 122 ESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGY 181
ES GKV+LGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGY
Sbjct 121 ESAGKVTLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGY 180
Query 182 DFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGRPPA------ADPDDE 235
DFFGGTRTVDVHVRRLRAKLGPE+EALIGTVRNVGYKAVRPARGRPP D
Sbjct 181 DFFGGTRTVDVHVRRLRAKLGPEYEALIGTVRNVGYKAVRPARGRPPVAEADDAESESDS 240
Query 236 DADPGRDGMQEPLVDPLRSQ 255
++ + + +PLVDPL +Q
Sbjct 241 ASESDAEDVHDPLVDPLHTQ 260
>gi|315442681|ref|YP_004075560.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Mycobacterium sp. Spyr1]
gi|315260984|gb|ADT97725.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Mycobacterium sp. Spyr1]
Length=263
Score = 382 bits (981), Expect = 3e-104, Method: Compositional matrix adjust.
Identities = 194/247 (79%), Positives = 219/247 (89%), Gaps = 0/247 (0%)
Query 2 LELLLLTSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGLC 61
++LLLLT + +P+ VLP+LSLL HTVRTAP E SSLLEAG AD +VDAR DL++ RGLC
Sbjct 1 MDLLLLTVDPHPESVLPSLSLLAHTVRTAPTEVSSLLEAGTADVAIVDARTDLAAARGLC 60
Query 62 RLLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLADQ 121
RLL +TG S+PV+AVV+EGGLVAV+ +WGLDEILL STGPAEIDARLRL+VGRRG +A+Q
Sbjct 61 RLLGTTGTSVPVVAVVNEGGLVAVNVEWGLDEILLPSTGPAEIDARLRLLVGRRGGMANQ 120
Query 122 ESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGY 181
E+LGK+SLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLL EVWGY
Sbjct 121 ENLGKISLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLQEVWGY 180
Query 182 DFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGRPPAADPDDEDADPGR 241
DFFGGTRTVDVHVRRLRAKLGPE+E+LIGTVRNVGYKAVRPARGRPPA + + +D D
Sbjct 181 DFFGGTRTVDVHVRRLRAKLGPEYESLIGTVRNVGYKAVRPARGRPPAPESEADDLDDDP 240
Query 242 DGMQEPL 248
EPL
Sbjct 241 YADDEPL 247
>gi|118472805|ref|YP_890012.1| transcriptional regulatory protein [Mycobacterium smegmatis str.
MC2 155]
gi|118174092|gb|ABK74988.1| transcriptional regulatory protein [Mycobacterium smegmatis str.
MC2 155]
Length=261
Score = 380 bits (977), Expect = 8e-104, Method: Compositional matrix adjust.
Identities = 189/241 (79%), Positives = 216/241 (90%), Gaps = 0/241 (0%)
Query 2 LELLLLTSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGLC 61
++LLLLT + +P+ VLP+LSLL HTVRTAP E SSLLE G+AD +VDAR DL++ RGLC
Sbjct 1 MDLLLLTVDPHPESVLPSLSLLAHTVRTAPTEVSSLLETGSADVAIVDARTDLAAARGLC 60
Query 62 RLLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLADQ 121
RLL +TG S+PV+AV++EGGLVAV+ +WGLDEILL STGPAEIDARLRL+VGRRG A+Q
Sbjct 61 RLLGTTGTSVPVVAVINEGGLVAVNHEWGLDEILLPSTGPAEIDARLRLLVGRRGGNANQ 120
Query 122 ESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGY 181
E++GK++LGELVIDEGTYTARLRG+PLDLTYKEFELLKYLAQHAGRVFTRAQLL EVWGY
Sbjct 121 ENVGKITLGELVIDEGTYTARLRGKPLDLTYKEFELLKYLAQHAGRVFTRAQLLQEVWGY 180
Query 182 DFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGRPPAADPDDEDADPGR 241
DFFGGTRTVDVHVRRLRAKLGPE+EALIGTVRNVGYKAVRP+RG+PPAAD ED G
Sbjct 181 DFFGGTRTVDVHVRRLRAKLGPEYEALIGTVRNVGYKAVRPSRGKPPAADASGEDVPDGP 240
Query 242 D 242
D
Sbjct 241 D 241
>gi|108801488|ref|YP_641685.1| response regulator receiver protein [Mycobacterium sp. MCS]
gi|119870641|ref|YP_940593.1| response regulator receiver protein [Mycobacterium sp. KMS]
gi|126437473|ref|YP_001073164.1| response regulator receiver protein [Mycobacterium sp. JLS]
gi|108771907|gb|ABG10629.1| response regulator receiver protein [Mycobacterium sp. MCS]
gi|119696730|gb|ABL93803.1| response regulator receiver protein [Mycobacterium sp. KMS]
gi|126237273|gb|ABO00674.1| response regulator receiver protein [Mycobacterium sp. JLS]
Length=257
Score = 380 bits (976), Expect = 1e-103, Method: Compositional matrix adjust.
Identities = 195/256 (77%), Positives = 220/256 (86%), Gaps = 3/256 (1%)
Query 2 LELLLLTSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGLC 61
++LLLLT + +P+ VLP+LSLL H VR AP E SSLLEAG AD +VDAR DL++ RGLC
Sbjct 1 MDLLLLTVDPHPESVLPSLSLLAHNVRAAPTEVSSLLEAGTADVAIVDARTDLAAARGLC 60
Query 62 RLLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLADQ 121
RLL +TG S+PV+AVV+EGGLVAV+ +WGLDEILL TGPAEIDARLRL+VGRRG +A+Q
Sbjct 61 RLLGTTGTSVPVVAVVTEGGLVAVNHEWGLDEILLPGTGPAEIDARLRLLVGRRGGVANQ 120
Query 122 ESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGY 181
E+ GK+SLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLL EVWGY
Sbjct 121 ENAGKISLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLQEVWGY 180
Query 182 DFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGRPPAAD---PDDEDAD 238
DFFGGTRTVDVHVRRLRAKLGPE+E+LIGTVRNVGYKAVRPARGRPPA + DDED
Sbjct 181 DFFGGTRTVDVHVRRLRAKLGPEYESLIGTVRNVGYKAVRPARGRPPAPEAELSDDEDDY 240
Query 239 PGRDGMQEPLVDPLRS 254
D + L DPLR+
Sbjct 241 ETPDSVPPSLADPLRA 256
>gi|145222242|ref|YP_001132920.1| response regulator receiver protein [Mycobacterium gilvum PYR-GCK]
gi|145214728|gb|ABP44132.1| response regulator receiver protein [Mycobacterium gilvum PYR-GCK]
Length=278
Score = 372 bits (956), Expect = 2e-101, Method: Compositional matrix adjust.
Identities = 189/241 (79%), Positives = 212/241 (88%), Gaps = 0/241 (0%)
Query 8 TSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGLCRLLSST 67
T + +P+ VLP+LSLL H VRTAP E SSLLEAG AD +VDAR DL++ RGLCRLL +T
Sbjct 22 TVDPHPESVLPSLSLLAHAVRTAPTEVSSLLEAGTADVAIVDARTDLAAARGLCRLLGTT 81
Query 68 GRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLADQESLGKV 127
G S+PV+AVV+EGGLVAV+ +WGLDEILL STGPAEIDARLRL+VGRRG +A+QE+LGK+
Sbjct 82 GTSVPVVAVVNEGGLVAVNVEWGLDEILLPSTGPAEIDARLRLLVGRRGGMANQENLGKI 141
Query 128 SLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGYDFFGGT 187
SLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLL EVWGYDFFGGT
Sbjct 142 SLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLQEVWGYDFFGGT 201
Query 188 RTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGRPPAADPDDEDADPGRDGMQEP 247
RTVDVHVRRLRAKLGPE+E+LIGTVRNVGYKAVRPARGRPPA + + +D D EP
Sbjct 202 RTVDVHVRRLRAKLGPEYESLIGTVRNVGYKAVRPARGRPPAPESEADDLDDDPYADDEP 261
Query 248 L 248
L
Sbjct 262 L 262
>gi|120406045|ref|YP_955874.1| response regulator receiver protein [Mycobacterium vanbaalenii
PYR-1]
gi|119958863|gb|ABM15868.1| response regulator receiver protein [Mycobacterium vanbaalenii
PYR-1]
Length=267
Score = 365 bits (938), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 199/267 (75%), Positives = 224/267 (84%), Gaps = 13/267 (4%)
Query 2 LELLLLTSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGLC 61
++LLLLT + +P+ VLP+L+LL H VRTAP E SSLLEAG AD +VDAR DL++ RGLC
Sbjct 1 MDLLLLTVDPHPESVLPSLALLAHNVRTAPTEVSSLLEAGTADVAIVDARTDLAAARGLC 60
Query 62 RLLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLADQ 121
RLL +TG S+PV+AVV+EGGLVAV+ +WGLDEILL STGPAEIDARLRL+VGRRG +A+Q
Sbjct 61 RLLGTTGTSVPVVAVVNEGGLVAVNVEWGLDEILLPSTGPAEIDARLRLLVGRRGGMANQ 120
Query 122 ESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGY 181
E+LGK+SLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLL EVWGY
Sbjct 121 ENLGKISLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLQEVWGY 180
Query 182 DFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGRP-------PAADPDD 234
DFFGGTRTVDVHVRRLRAKLGPE+EALIGTVRNVGYKAVRPARGR P+ D D
Sbjct 181 DFFGGTRTVDVHVRRLRAKLGPEYEALIGTVRNVGYKAVRPARGRAPAAGADLPSDDLDG 240
Query 235 ED------ADPGRDGMQEPLVDPLRSQ 255
+D RDG+ E L D LRSQ
Sbjct 241 DDPYEDGVGSLDRDGVPEALGDALRSQ 267
>gi|333992181|ref|YP_004524795.1| transcriptional regulator [Mycobacterium sp. JDM601]
gi|333488149|gb|AEF37541.1| transcriptional regulatory protein [Mycobacterium sp. JDM601]
Length=260
Score = 358 bits (919), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 183/260 (71%), Positives = 213/260 (82%), Gaps = 6/260 (2%)
Query 2 LELLLLTSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGLC 61
+ELLLLT++L+P+ VLP+LSLL HTVRTAP E S+LLEAG+A+ V+VDAR DL+ RGLC
Sbjct 1 MELLLLTADLHPEVVLPSLSLLAHTVRTAPPEVSALLEAGSAEVVIVDARTDLAGARGLC 60
Query 62 RLLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLADQ 121
RLLS+T S+PV+AVV+EGGLVAV+A+WG+DEILL TGPAE+DARLRL+ GRR A
Sbjct 61 RLLSTTAGSVPVIAVVTEGGLVAVNAEWGIDEILLPGTGPAEVDARLRLLTGRRAAPAAD 120
Query 122 ESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGY 181
++ G+ LGELVIDE TYTARLRGRPLDLTYKEFELLKYL QH GRVFTRAQLL EVWGY
Sbjct 121 QASGQTKLGELVIDEATYTARLRGRPLDLTYKEFELLKYLTQHVGRVFTRAQLLQEVWGY 180
Query 182 DFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGRPPAADPDDED----- 236
DFFGGTRTVDVHVRRLRAKLGPE+E+LIGTVRNVGYKAVRP RG P A D+++
Sbjct 181 DFFGGTRTVDVHVRRLRAKLGPEYESLIGTVRNVGYKAVRPVRGNPAGASGDEDEAGEDL 240
Query 237 -ADPGRDGMQEPLVDPLRSQ 255
AD G D + + L SQ
Sbjct 241 AADDGADSAGDGAPESLASQ 260
>gi|312138323|ref|YP_004005659.1| two component system response regulator [Rhodococcus equi 103S]
gi|325674760|ref|ZP_08154447.1| transcriptional regulator [Rhodococcus equi ATCC 33707]
gi|311887662|emb|CBH46974.1| two component system response regulator [Rhodococcus equi 103S]
gi|325554346|gb|EGD24021.1| transcriptional regulator [Rhodococcus equi ATCC 33707]
Length=253
Score = 356 bits (914), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 179/223 (81%), Positives = 202/223 (91%), Gaps = 0/223 (0%)
Query 2 LELLLLTSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGLC 61
+ELLLLTS+ PD VLP+L+LL H+VR AP E SSLLEAG AD LVDAR+DL++ RGLC
Sbjct 1 MELLLLTSDPNPDTVLPSLALLSHSVRPAPTEVSSLLEAGAADVALVDARSDLAAARGLC 60
Query 62 RLLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLADQ 121
RLL STG +IPV+AV++EGGLVAV++DWGLD+ILL STGPAE+DARLRL+VGR G +A
Sbjct 61 RLLGSTGSAIPVVAVLTEGGLVAVNSDWGLDDILLPSTGPAELDARLRLLVGRNGGVASP 120
Query 122 ESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGY 181
E+ GK++LGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLL EVWGY
Sbjct 121 EATGKITLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLQEVWGY 180
Query 182 DFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPAR 224
DFFGGTRTVDVHVRRLRAKLG E+E+LIGTVRNVGYKAVRPAR
Sbjct 181 DFFGGTRTVDVHVRRLRAKLGSEYESLIGTVRNVGYKAVRPAR 223
>gi|54022565|ref|YP_116807.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
gi|54014073|dbj|BAD55443.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
Length=252
Score = 356 bits (913), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 182/241 (76%), Positives = 206/241 (86%), Gaps = 4/241 (1%)
Query 2 LELLLLTSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGLC 61
+ELLLLTS+ P+ VLP+L+LL HTVR AP E +SLLEAG AD LVDAR DL++ RGLC
Sbjct 1 MELLLLTSDPNPESVLPSLALLAHTVRPAPTEVASLLEAGTADVALVDARTDLAAARGLC 60
Query 62 RLLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLADQ 121
RLL STG S+PV+AV++EGGLVAV+ADWGLD+ILL TGPAE+DARLRL+VGR G +A
Sbjct 61 RLLGSTGSSVPVVAVLTEGGLVAVNADWGLDDILLPGTGPAELDARLRLLVGRNGGVASP 120
Query 122 ESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGY 181
E+ GK++LGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLL EVWGY
Sbjct 121 ENTGKITLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLQEVWGY 180
Query 182 DFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPAR----GRPPAADPDDEDA 237
DFFGGTRTVDVHVRRLRAKLG E+E+LIGTVRNVGYKAVRPAR G + DD +
Sbjct 181 DFFGGTRTVDVHVRRLRAKLGSEYESLIGTVRNVGYKAVRPARTPAKGEAVSFPEDDSEG 240
Query 238 D 238
D
Sbjct 241 D 241
>gi|226364352|ref|YP_002782134.1| transcriptional regulator [Rhodococcus opacus B4]
gi|226242841|dbj|BAH53189.1| putative transcriptional regulator [Rhodococcus opacus B4]
Length=256
Score = 342 bits (878), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 183/243 (76%), Positives = 208/243 (86%), Gaps = 5/243 (2%)
Query 1 LLELLLLTSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGL 60
+ELLLLTS+ P+ VLPAL+LL H+VR AP E SSLLEA +AD LVDAR DL++ RGL
Sbjct 4 CVELLLLTSDPNPEAVLPALALLAHSVRPAPTEVSSLLEASSADIALVDARTDLAAARGL 63
Query 61 CRLLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLAD 120
CRLL STG ++PV+AV++EGGLVAV++DWGLD+ILL TGPAE+DARLRL+VGR G +A
Sbjct 64 CRLLGSTGSAVPVVAVLTEGGLVAVNSDWGLDDILLPGTGPAEVDARLRLLVGRTGGVAS 123
Query 121 QESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWG 180
E+ GK++LGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLL EVWG
Sbjct 124 PEASGKITLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLQEVWG 183
Query 181 YDFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGR-----PPAADPDDE 235
YDFFGGTRTVDVHVRRLRAKLG E+E+LIGTVRNVGYKAVRP R + PP D D E
Sbjct 184 YDFFGGTRTVDVHVRRLRAKLGSEYESLIGTVRNVGYKAVRPTRSKSGAPVPPVDDLDAE 243
Query 236 DAD 238
DAD
Sbjct 244 DAD 246
>gi|226308293|ref|YP_002768253.1| transcriptional regulator [Rhodococcus erythropolis PR4]
gi|229488368|ref|ZP_04382234.1| transcriptional regulator [Rhodococcus erythropolis SK121]
gi|226187410|dbj|BAH35514.1| putative transcriptional regulator [Rhodococcus erythropolis
PR4]
gi|229323872|gb|EEN89627.1| transcriptional regulator [Rhodococcus erythropolis SK121]
Length=250
Score = 342 bits (878), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 183/241 (76%), Positives = 207/241 (86%), Gaps = 4/241 (1%)
Query 2 LELLLLTSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGLC 61
+ELLLLTS+ P+ VLPAL+LL H+VR AP E SSLLEA +AD LVDAR DL++ RGLC
Sbjct 1 MELLLLTSDPNPEAVLPALALLAHSVRPAPTEVSSLLEASSADVALVDARTDLAAARGLC 60
Query 62 RLLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLADQ 121
RLL STG ++PV+AV++EGGLVAV+ADWGLD+ILL TGPAE+DARLRL+V R G +A
Sbjct 61 RLLGSTGSAVPVVAVLTEGGLVAVNADWGLDDILLPGTGPAEVDARLRLLVARSGGVASP 120
Query 122 ESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGY 181
E+ GK++LGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLL EVWGY
Sbjct 121 EASGKITLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLQEVWGY 180
Query 182 DFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGRPPAADP----DDEDA 237
DFFGGTRTVDVHVRRLRAKLG E+E+LIGTVRNVGYKAVRP R + AA P DDED
Sbjct 181 DFFGGTRTVDVHVRRLRAKLGTEYESLIGTVRNVGYKAVRPTRAKGGAAAPVQFEDDEDV 240
Query 238 D 238
D
Sbjct 241 D 241
>gi|111021831|ref|YP_704803.1| transcriptional regulator [Rhodococcus jostii RHA1]
gi|110821361|gb|ABG96645.1| transcriptional regulator [Rhodococcus jostii RHA1]
Length=256
Score = 342 bits (878), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 183/243 (76%), Positives = 208/243 (86%), Gaps = 5/243 (2%)
Query 1 LLELLLLTSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGL 60
+ELLLLTS+ P+ VLPAL+LL H+VR AP E SSLLEA +AD LVDAR DL++ RGL
Sbjct 4 CVELLLLTSDPNPEAVLPALALLAHSVRPAPTEVSSLLEASSADIALVDARTDLAAARGL 63
Query 61 CRLLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLAD 120
CRLL STG ++PV+AV++EGGLVAV++DWGLD+ILL TGPAE+DARLRL+VGR G +A
Sbjct 64 CRLLGSTGSAVPVVAVLTEGGLVAVNSDWGLDDILLPGTGPAEVDARLRLLVGRTGGVAS 123
Query 121 QESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWG 180
E+ GK++LGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLL EVWG
Sbjct 124 PEASGKITLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLQEVWG 183
Query 181 YDFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGR-----PPAADPDDE 235
YDFFGGTRTVDVHVRRLRAKLG E+E+LIGTVRNVGYKAVRP R + PP D D E
Sbjct 184 YDFFGGTRTVDVHVRRLRAKLGSEYESLIGTVRNVGYKAVRPTRSKSGVPVPPVDDLDAE 243
Query 236 DAD 238
DAD
Sbjct 244 DAD 246
>gi|333918420|ref|YP_004492001.1| putative transcriptional regulator [Amycolicicoccus subflavus
DQS3-9A1]
gi|333480641|gb|AEF39201.1| Putative transcriptional regulator [Amycolicicoccus subflavus
DQS3-9A1]
Length=248
Score = 341 bits (874), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 172/237 (73%), Positives = 201/237 (85%), Gaps = 3/237 (1%)
Query 2 LELLLLTSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGLC 61
+ELLLLT++ P+ VLP+L+LLPH VR APA+ SSLL+A AD +VDAR DL+S RGLC
Sbjct 1 MELLLLTADPNPESVLPSLALLPHNVRPAPADVSSLLDAAGADVAVVDARTDLASARGLC 60
Query 62 RLLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLADQ 121
R+L++TG ++PV+AV++EGGLVAVS DWG+D+ILL TGPAE+DARLRL+VGR +
Sbjct 61 RILANTGAAVPVVAVLTEGGLVAVSPDWGIDDILLPGTGPAELDARLRLLVGRTTVQTED 120
Query 122 ESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGY 181
+ G V+LGEL+IDEGTYTARLRG+PLDLTYKEFELLKYL QHAGRVFTRAQLL EVWGY
Sbjct 121 DDAGTVTLGELLIDEGTYTARLRGKPLDLTYKEFELLKYLVQHAGRVFTRAQLLQEVWGY 180
Query 182 DFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGRPPAADPDDEDAD 238
DFFGGTRTVDVHVRRLRAKLG EHEALIGTVRNVGYKAVRP+R P DDE+ D
Sbjct 181 DFFGGTRTVDVHVRRLRAKLGAEHEALIGTVRNVGYKAVRPSRSGKPR---DDENND 234
>gi|343926095|ref|ZP_08765607.1| putative transcriptional regulator [Gordonia alkanivorans NBRC
16433]
gi|343764021|dbj|GAA12533.1| putative transcriptional regulator [Gordonia alkanivorans NBRC
16433]
Length=267
Score = 340 bits (871), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 179/233 (77%), Positives = 202/233 (87%), Gaps = 0/233 (0%)
Query 2 LELLLLTSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGLC 61
++LLLLT++ P+ VLP+LSLL H VR AP E SSL+EAGNAD LVDAR DL++ RGLC
Sbjct 1 MDLLLLTADPNPESVLPSLSLLAHNVRVAPTEVSSLMEAGNADVALVDARADLAAARGLC 60
Query 62 RLLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLADQ 121
RLL STG S+PV AV++EGGLVAV+ADWG+DE LL TGPAE+DARLRL+V R +A +
Sbjct 61 RLLGSTGSSVPVAAVLTEGGLVAVNADWGIDEFLLPGTGPAELDARLRLLVARTRGVAAE 120
Query 122 ESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGY 181
E+ GKV+LGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQ+AGRVFTRAQLL EVWGY
Sbjct 121 ETSGKVTLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQNAGRVFTRAQLLQEVWGY 180
Query 182 DFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGRPPAADPDD 234
DFFGGTRTVDVHVRRLRAKLG EHE+LIGTVRNVGYKAVRP RGR AA+ D
Sbjct 181 DFFGGTRTVDVHVRRLRAKLGSEHESLIGTVRNVGYKAVRPTRGRASAAEIAD 233
>gi|169627845|ref|YP_001701494.1| transcriptional regulatory protein [Mycobacterium abscessus ATCC
19977]
gi|169239812|emb|CAM60840.1| Probable transcriptional regulatory protein [Mycobacterium abscessus]
Length=268
Score = 336 bits (861), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 170/219 (78%), Positives = 188/219 (86%), Gaps = 0/219 (0%)
Query 8 TSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGLCRLLSST 67
T++ PD VLP+LSLL HTVR P+E SSLLEAG AD +VDAR DL+S RGLCRLL +
Sbjct 12 TADPNPDGVLPSLSLLAHTVRPVPSEVSSLLEAGAADVAIVDARTDLASARGLCRLLGAA 71
Query 68 GRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLADQESLGKV 127
G S+PV+AVV+EG LVAV+ DWGLD+ILL TGPAEIDARLRL+VGRR + E+ KV
Sbjct 72 GSSVPVVAVVNEGSLVAVNVDWGLDDILLPGTGPAEIDARLRLLVGRRAGAVNVENASKV 131
Query 128 SLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGYDFFGGT 187
LGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLL EVWGYDFFGGT
Sbjct 132 VLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLQEVWGYDFFGGT 191
Query 188 RTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGR 226
RTVDVHVRRLRAKLG E+E+LIGTVRNVGYKAVRP R +
Sbjct 192 RTVDVHVRRLRAKLGGEYESLIGTVRNVGYKAVRPPRAK 230
>gi|262203794|ref|YP_003275002.1| transcriptional regulator [Gordonia bronchialis DSM 43247]
gi|262087141|gb|ACY23109.1| transcriptional regulator domain protein [Gordonia bronchialis
DSM 43247]
Length=270
Score = 335 bits (858), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 173/230 (76%), Positives = 200/230 (87%), Gaps = 0/230 (0%)
Query 2 LELLLLTSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGLC 61
++LLLLT++ P+ VLP+LSLL HTVR AP E SSL+EAGN+D +VDAR DL++ RGLC
Sbjct 1 MDLLLLTADPNPESVLPSLSLLAHTVRVAPTEVSSLMEAGNSDVAIVDARTDLAAARGLC 60
Query 62 RLLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLADQ 121
RLL STG + PV AV++EGGLVAV+ADWG+DE LL TGPAE+DARLRL++ R ++ +
Sbjct 61 RLLGSTGSAAPVAAVLTEGGLVAVNADWGIDEFLLPGTGPAELDARLRLLLARTRGVSTE 120
Query 122 ESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGY 181
E+ GKV LGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQ+AGRVFTRAQLL EVWGY
Sbjct 121 EASGKVPLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQNAGRVFTRAQLLQEVWGY 180
Query 182 DFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGRPPAAD 231
DFFGGTRTVDVHVRRLRAKLG EHE+LIGTVRNVGYKAVRP+RGR +D
Sbjct 181 DFFGGTRTVDVHVRRLRAKLGSEHESLIGTVRNVGYKAVRPSRGRSAGSD 230
>gi|296141220|ref|YP_003648463.1| winged helix family two component transcriptional regulator [Tsukamurella
paurometabola DSM 20162]
gi|296029354|gb|ADG80124.1| putative two component transcriptional regulator, winged helix
family [Tsukamurella paurometabola DSM 20162]
Length=243
Score = 330 bits (845), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 171/231 (75%), Positives = 193/231 (84%), Gaps = 1/231 (0%)
Query 2 LELLLLTSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGLC 61
++L+LLTS+ PD VLPALSLL HTVR A+ SSLLE G AD LVDAR DL + RGLC
Sbjct 1 MDLILLTSDPNPDGVLPALSLLAHTVRPLAADVSSLLEVGPADVALVDARTDLVAARGLC 60
Query 62 RLLSSTGR-SIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLAD 120
RLL +TG IPV+AV++EGGLVA +ADWGLD+ LL +TGPAEIDARLRLV GRR A+
Sbjct 61 RLLGTTGGGQIPVVAVLTEGGLVAANADWGLDDFLLPATGPAEIDARLRLVAGRRIGGAE 120
Query 121 QESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWG 180
E K++LGEL+IDEGTYTARLRG+PLDLTYKEFELLK+LAQ+ GRVFTRAQLL EVWG
Sbjct 121 DEVADKITLGELLIDEGTYTARLRGKPLDLTYKEFELLKFLAQNVGRVFTRAQLLQEVWG 180
Query 181 YDFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGRPPAAD 231
YDFFGGTRTVDVHVRRLRAKLG EHE +IGTVRNVGYKAVRPARG+ D
Sbjct 181 YDFFGGTRTVDVHVRRLRAKLGAEHEGMIGTVRNVGYKAVRPARGKNDRGD 231
>gi|256380805|ref|YP_003104465.1| winged helix family two component transcriptional regulator [Actinosynnema
mirum DSM 43827]
gi|255925108|gb|ACU40619.1| putative two component transcriptional regulator, winged helix
family [Actinosynnema mirum DSM 43827]
Length=250
Score = 320 bits (819), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 166/223 (75%), Positives = 186/223 (84%), Gaps = 1/223 (0%)
Query 2 LELLLLTSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGLC 61
+++LLLT++ P+ VLPAL+LLPH VR E S+LLEAG D VLVDAR DL RGLC
Sbjct 3 IDVLLLTTDPDPEAVLPALALLPHEVRPLRPEVSALLEAGPHDVVLVDARTDLVGARGLC 62
Query 62 RLLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLADQ 121
RLL S+G +PV+A+V+EG LVAV+ADW +DEILL ++GPAE+DARLRLV RRG A
Sbjct 63 RLLDSSGVDVPVVAIVTEGSLVAVNADWSVDEILLPTSGPAEVDARLRLVRSRRG-AAQS 121
Query 122 ESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGY 181
G + LGELVIDE TYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLL EVWGY
Sbjct 122 GGDGSLQLGELVIDEATYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLQEVWGY 181
Query 182 DFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPAR 224
DFFGGTRTVDVHVRRLRAKLGPEHE+LIGTVRNVGYK VRP R
Sbjct 182 DFFGGTRTVDVHVRRLRAKLGPEHESLIGTVRNVGYKFVRPPR 224
>gi|324999029|ref|ZP_08120141.1| two component transcriptional regulator, winged helix family
protein [Pseudonocardia sp. P1]
Length=266
Score = 305 bits (782), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 162/224 (73%), Positives = 184/224 (83%), Gaps = 1/224 (0%)
Query 2 LELLLLTSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGLC 61
+ELLLLT+ VLPALSLLPH VRTA E ++LL+AG DAVLVDAR+DL + R LC
Sbjct 1 MELLLLTTAPDAAAVLPALSLLPHNVRTAAPEVAALLDAGPHDAVLVDARSDLVAARSLC 60
Query 62 RLLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLADQ 121
RLL STG +PV+AV++EGGLVAVS +W +DEILL TGPAE+DARLRL+ R G +
Sbjct 61 RLLGSTGTDVPVIAVLNEGGLVAVSGEWVVDEILLPDTGPAEVDARLRLLRARPGAESAS 120
Query 122 ESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGY 181
G + LGELVIDE TY+ARL+GR L+LTYKEFELLKYLAQHAGRVFTRAQLL EVWGY
Sbjct 121 GG-GALVLGELVIDEATYSARLKGRLLELTYKEFELLKYLAQHAGRVFTRAQLLQEVWGY 179
Query 182 DFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARG 225
DFFGGTRTVDVHVRRLRAKLG EHE +IGTVRNVGYK VRP+RG
Sbjct 180 DFFGGTRTVDVHVRRLRAKLGGEHEQMIGTVRNVGYKFVRPSRG 223
>gi|326384905|ref|ZP_08206580.1| putative two component transcriptional regulator, winged helix
family protein [Gordonia neofelifaecis NRRL B-59395]
gi|326196424|gb|EGD53623.1| putative two component transcriptional regulator, winged helix
family protein [Gordonia neofelifaecis NRRL B-59395]
Length=239
Score = 305 bits (781), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 161/240 (68%), Positives = 192/240 (80%), Gaps = 7/240 (2%)
Query 2 LELLLLTSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGLC 61
++LLLLT E + VL +L LL H V PAE S+L++ G +LVDAR DL+ R +C
Sbjct 1 MDLLLLTEEQSAEAVLGSLPLLSHDVALLPAETSALVQLGEPQVILVDARTDLAGARTMC 60
Query 62 RLLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLADQ 121
RL+S TG + PV+AVV+EGGLVAVSADWG+D+ LL STGPAE+DARLRLV R D+
Sbjct 61 RLVSDTG-TAPVVAVVAEGGLVAVSADWGIDDFLLPSTGPAELDARLRLVSTRVAGTVDE 119
Query 122 ESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGY 181
+ KV+LGELVIDE TYTARLRG+P+DLTYKEFELLK+LAQ+AGRVFTRAQLLHEVWGY
Sbjct 120 QP-DKVTLGELVIDESTYTARLRGKPIDLTYKEFELLKFLAQNAGRVFTRAQLLHEVWGY 178
Query 182 DFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPAR-----GRPPAADPDDED 236
D+FGGTRTVDVHVRRLRAKLG +HE+LIGTVRNVGYKAV+PAR G P+AD ++D
Sbjct 179 DYFGGTRTVDVHVRRLRAKLGSDHESLIGTVRNVGYKAVKPARRGDRDGGGPSADTLEDD 238
>gi|331694341|ref|YP_004330580.1| winged helix family transcriptional regulator [Pseudonocardia
dioxanivorans CB1190]
gi|326949030|gb|AEA22727.1| transcriptional regulator, winged helix family [Pseudonocardia
dioxanivorans CB1190]
Length=252
Score = 305 bits (780), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 162/223 (73%), Positives = 183/223 (83%), Gaps = 1/223 (0%)
Query 2 LELLLLTSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGLC 61
+ELLLLT++ P VLPAL+LLPH VRTA E ++LL+AG DAVLVDAR DL + R LC
Sbjct 1 MELLLLTADPDPGSVLPALTLLPHGVRTAAPEVAALLDAGPHDAVLVDARTDLVAARSLC 60
Query 62 RLLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLADQ 121
RLL STG +PV+A+++EGGLVAVS +W +DEILL + GPAE+DARLRL+ R G A
Sbjct 61 RLLGSTGTDVPVIAILTEGGLVAVSGEWAVDEILLPAAGPAEVDARLRLLRSRPGGDAAS 120
Query 122 ESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGY 181
V LGELVIDE TY+ARLRGR L+LTYKEFELLKYLAQHAGRVFTRAQLL EVWGY
Sbjct 121 AGGALV-LGELVIDEATYSARLRGRLLELTYKEFELLKYLAQHAGRVFTRAQLLQEVWGY 179
Query 182 DFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPAR 224
DFFGGTRTVDVHVRRLRAKLG EHE +IGTVRNVGYK VRPAR
Sbjct 180 DFFGGTRTVDVHVRRLRAKLGSEHEQMIGTVRNVGYKFVRPAR 222
>gi|134103524|ref|YP_001109185.1| transcriptional regulator [Saccharopolyspora erythraea NRRL 2338]
gi|291008373|ref|ZP_06566346.1| transcriptional regulator [Saccharopolyspora erythraea NRRL 2338]
gi|133916147|emb|CAM06260.1| transcriptional regulator [Saccharopolyspora erythraea NRRL 2338]
Length=256
Score = 300 bits (769), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 158/228 (70%), Positives = 184/228 (81%), Gaps = 3/228 (1%)
Query 3 ELLLLTSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGLCR 62
ELLLLTS+ + VLPAL LLPH VR P E ++L AG D VLVDAR DL+ R LCR
Sbjct 4 ELLLLTSDRDCEAVLPALGLLPHRVRVLPPEPGAILSAGTHDVVLVDARTDLAGARDLCR 63
Query 63 LLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLADQE 122
+L+ PVLAVV+EGGLV VSA+WG+D+ILL + GPAEIDARLRL+ RRG A E
Sbjct 64 VLAVG--DAPVLAVVNEGGLVTVSAEWGVDDILLPTAGPAEIDARLRLLTTRRGADAG-E 120
Query 123 SLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGYD 182
G +++G+LVI+E TYTARL+GR L+LTYKEFELLKYLAQHAGRVFTRAQLL EVWGYD
Sbjct 121 GDGMLTVGDLVIEESTYTARLKGRALELTYKEFELLKYLAQHAGRVFTRAQLLQEVWGYD 180
Query 183 FFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGRPPAA 230
FFGGTRTVDVHVRRLRAKLGPE++++IGTVRNVGYK VRP+R PA+
Sbjct 181 FFGGTRTVDVHVRRLRAKLGPEYDSMIGTVRNVGYKFVRPSRSSQPAS 228
>gi|317509394|ref|ZP_07967013.1| transcriptional regulatory protein [Segniliparus rugosus ATCC
BAA-974]
gi|316252317|gb|EFV11768.1| transcriptional regulatory protein [Segniliparus rugosus ATCC
BAA-974]
Length=249
Score = 300 bits (769), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 155/241 (65%), Positives = 183/241 (76%), Gaps = 3/241 (1%)
Query 2 LELLLLTSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGLC 61
++LL ++++ P+ LPAL LL H VRT P + +SL++ G D ++VDAR DL S RGLC
Sbjct 1 MDLLFMSADPRPEVALPALGLLAHAVRTLPPDFASLIDGGPVDVIIVDARTDLGSARGLC 60
Query 62 RLLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLADQ 121
R+L+ G + + A+ EGGLVA+S DWGLD+ L GPAE+DARLRL+ GR A
Sbjct 61 RVLAGAGSTPAIAALFQEGGLVALSPDWGLDDFFLPGIGPAELDARLRLLRGRAAVSAGS 120
Query 122 ESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGY 181
+ KV+LGELVIDEGTYTARLRG+ LDLTYKEFELLKYLAQHAGRVFTRAQLL EVWGY
Sbjct 121 D---KVTLGELVIDEGTYTARLRGKSLDLTYKEFELLKYLAQHAGRVFTRAQLLQEVWGY 177
Query 182 DFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGRPPAADPDDEDADPGR 241
DFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRP +E+ D G
Sbjct 178 DFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPVNRNGKDRRRGEENGDEGS 237
Query 242 D 242
+
Sbjct 238 E 238
>gi|26278957|gb|AAN77733.1| transcription regulator GlnR [Amycolatopsis mediterranei]
Length=259
Score = 300 bits (767), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 156/230 (68%), Positives = 183/230 (80%), Gaps = 5/230 (2%)
Query 2 LELLLLTSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGLC 61
L+LL+LT+E VLPAL LLPHTVR E ++LL+AG+ D +L+DAR+DL+S + LC
Sbjct 3 LDLLVLTAEADATAVLPALDLLPHTVRVRAPEVTALLDAGHRDVILLDARSDLASAKSLC 62
Query 62 RLLSSTGR---SIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDL 118
RLL TG + P++AVV EGGLVAVSA+W D+ILL + GPAE+DARLRLV R G
Sbjct 63 RLLKGTGEDEAATPIIAVVGEGGLVAVSAEWRTDDILLPTAGPAEVDARLRLVTTRDGGS 122
Query 119 ADQESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEV 178
A ++ ++ +GELVIDE TYTARLR R L+LTYKEFELLKYLAQHAGRVFTRAQLL EV
Sbjct 123 AQVDA--ELRVGELVIDEATYTARLRKRTLELTYKEFELLKYLAQHAGRVFTRAQLLQEV 180
Query 179 WGYDFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGRPP 228
WGYDFFGGTRTVDVHVRRLRAKLGPEHE +IGTVRNVGYK RPA+ P
Sbjct 181 WGYDFFGGTRTVDVHVRRLRAKLGPEHEQMIGTVRNVGYKFERPAKSGGP 230
>gi|300790809|ref|YP_003771100.1| GlnR family transcriptional regulator [Amycolatopsis mediterranei
U32]
gi|299800323|gb|ADJ50698.1| transcriptional regulator GlnR [Amycolatopsis mediterranei U32]
gi|340532501|gb|AEK47706.1| GlnR family transcriptional regulator [Amycolatopsis mediterranei
S699]
Length=262
Score = 299 bits (766), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 156/230 (68%), Positives = 183/230 (80%), Gaps = 5/230 (2%)
Query 2 LELLLLTSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGLC 61
L+LL+LT+E VLPAL LLPHTVR E ++LL+AG+ D +L+DAR+DL+S + LC
Sbjct 6 LDLLVLTAEADATAVLPALDLLPHTVRVRAPEVTALLDAGHRDVILLDARSDLASAKSLC 65
Query 62 RLLSSTGR---SIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDL 118
RLL TG + P++AVV EGGLVAVSA+W D+ILL + GPAE+DARLRLV R G
Sbjct 66 RLLKGTGEDEAATPIIAVVGEGGLVAVSAEWRTDDILLPTAGPAEVDARLRLVTTRDGGS 125
Query 119 ADQESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEV 178
A ++ ++ +GELVIDE TYTARLR R L+LTYKEFELLKYLAQHAGRVFTRAQLL EV
Sbjct 126 AQVDA--ELRVGELVIDEATYTARLRKRTLELTYKEFELLKYLAQHAGRVFTRAQLLQEV 183
Query 179 WGYDFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGRPP 228
WGYDFFGGTRTVDVHVRRLRAKLGPEHE +IGTVRNVGYK RPA+ P
Sbjct 184 WGYDFFGGTRTVDVHVRRLRAKLGPEHEQMIGTVRNVGYKFERPAKSGGP 233
>gi|302531004|ref|ZP_07283346.1| transcription regulator GlnR [Streptomyces sp. AA4]
gi|302439899|gb|EFL11715.1| transcription regulator GlnR [Streptomyces sp. AA4]
Length=268
Score = 291 bits (746), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 154/236 (66%), Positives = 184/236 (78%), Gaps = 5/236 (2%)
Query 2 LELLLLTSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGLC 61
L+LL+LT EL VLPAL LLPHTVR E ++LL+AG+ D +L+DAR+DL+S + LC
Sbjct 28 LDLLVLTGELDATSVLPALDLLPHTVRVREPEVTALLDAGHRDVILLDARSDLASAKSLC 87
Query 62 RLL--SSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLA 119
RLL + PV+AVV EGGLVAV+++W D+ILL + GPAE+DARLRL R G
Sbjct 88 RLLKGAEDESGTPVIAVVGEGGLVAVNSEWRTDDILLPTAGPAEVDARLRLATTRDG--V 145
Query 120 DQESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVW 179
++ ++ +G+LVIDE TYTA+LR R L+LTYKEFELLKYLAQHAGRVFTRAQLL EVW
Sbjct 146 GLQADAELRVGDLVIDEATYTAKLRRRTLELTYKEFELLKYLAQHAGRVFTRAQLLQEVW 205
Query 180 GYDFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARG-RPPAADPDD 234
GYDFFGGTRTVDVHVRRLRAKLGPEHE +IGTVRNVGYK RPA+G +P A P D
Sbjct 206 GYDFFGGTRTVDVHVRRLRAKLGPEHEQMIGTVRNVGYKFERPAKGAKPVVAVPTD 261
>gi|269124858|ref|YP_003298228.1| putative winged helix family two component transcriptional regulator
[Thermomonospora curvata DSM 43183]
gi|268309816|gb|ACY96190.1| putative two component transcriptional regulator, winged helix
family [Thermomonospora curvata DSM 43183]
Length=237
Score = 289 bits (740), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 150/218 (69%), Positives = 176/218 (81%), Gaps = 1/218 (0%)
Query 4 LLLLTSELYP-DPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGLCR 62
LLLLT+ L P D VLPAL LL H+VR APAEAS+L++A AD VLVDAR DL + LCR
Sbjct 4 LLLLTNALEPSDEVLPALGLLLHSVRVAPAEASALIDAPPADVVLVDARRDLVQAKSLCR 63
Query 63 LLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLADQE 122
LL +TG P+LAVV+EGGL A+S +WGLD++LL + GPAE++ARLRL +GR +
Sbjct 64 LLRTTGLDCPLLAVVTEGGLAALSPEWGLDDVLLQTAGPAEVEARLRLAIGRAAASEADD 123
Query 123 SLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGYD 182
G++ G+L IDE TYTARLRGR LDLT+KEFELLKYLAQH GRVFTRAQLL EVWGYD
Sbjct 124 VPGEIRNGDLTIDEATYTARLRGRVLDLTFKEFELLKYLAQHPGRVFTRAQLLQEVWGYD 183
Query 183 FFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAV 220
+FGGTRTVDVHVRRLRAKLG E+E+LIGTVRNVGY+ V
Sbjct 184 YFGGTRTVDVHVRRLRAKLGAEYESLIGTVRNVGYRFV 221
>gi|271962447|ref|YP_003336643.1| response regulator receiver protein [Streptosporangium roseum
DSM 43021]
gi|270505622|gb|ACZ83900.1| response regulator receiver protein [Streptosporangium roseum
DSM 43021]
Length=237
Score = 289 bits (739), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 154/239 (65%), Positives = 186/239 (78%), Gaps = 7/239 (2%)
Query 4 LLLLTSELYPDP-VLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGLCR 62
LLLLT+ L P VLPAL LL H+VR PAEA++L++A ADAVLVDAR +L + LCR
Sbjct 4 LLLLTNALEPSTEVLPALGLLLHSVRVVPAEAAALIDAPPADAVLVDARRELVHAKSLCR 63
Query 63 LLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLADQE 122
LL +TG + P+L +V+EGGL A++A+WG D+++L S+GPAE++ARLRL VGR A +E
Sbjct 64 LLRTTGIACPLLVIVTEGGLAAMTAEWGADDVILDSSGPAEVEARLRLAVGRLNMSAAEE 123
Query 123 SLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGYD 182
++ G+L IDE TYTARLRGR LDLT+KEFELLKYLAQH GRVFTRAQLL EVWGYD
Sbjct 124 VPDEIRSGDLSIDEATYTARLRGRALDLTFKEFELLKYLAQHPGRVFTRAQLLQEVWGYD 183
Query 183 FFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGRPPAADPDDEDADPGR 241
+FGGTRTVDVHVRRLRAKLG E+E+LIGTVRNVGY+ V P RG A ED +P R
Sbjct 184 YFGGTRTVDVHVRRLRAKLGAEYESLIGTVRNVGYRFV-PERGSEAA-----EDREPAR 236
>gi|291438764|ref|ZP_06578154.1| two-component system response regulator [Streptomyces ghanaensis
ATCC 14672]
gi|291341659|gb|EFE68615.1| two-component system response regulator [Streptomyces ghanaensis
ATCC 14672]
Length=259
Score = 286 bits (733), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 147/223 (66%), Positives = 177/223 (80%), Gaps = 2/223 (0%)
Query 4 LLLLTSELYPDP-VLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGLCR 62
LLLLT+ L P VLPAL LL HTVR APA +L++ AD +LVD R DL R LC+
Sbjct 4 LLLLTNALQPSAEVLPALGLLLHTVRVAPAAGPALVDTPGADVILVDGRRDLPQVRSLCQ 63
Query 63 LLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLADQE 122
LL STG P++ VV+EGGL AV+ADWG+D++LL + GPAE++ARLRL +GRR L D +
Sbjct 64 LLRSTGPGCPLVLVVTEGGLAAVTADWGIDDVLLDTAGPAEVEARLRLALGRR-QLVDDD 122
Query 123 SLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGYD 182
S ++ G+L +DE TY+A+L+GR LDLT+KEFELLKYLAQH GRVFTRAQLL EVWGYD
Sbjct 123 SPTEIRNGDLSVDEATYSAKLKGRVLDLTFKEFELLKYLAQHPGRVFTRAQLLQEVWGYD 182
Query 183 FFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARG 225
+FGGTRTVDVHVRRLRAKLGPEHE+LIGTVRNVGY+ V P +G
Sbjct 183 YFGGTRTVDVHVRRLRAKLGPEHESLIGTVRNVGYRFVTPEKG 225
>gi|302520782|ref|ZP_07273124.1| two-component system response regulator [Streptomyces sp. SPB78]
gi|318059648|ref|ZP_07978371.1| transcriptional regulatory protein [Streptomyces sp. SA3_actG]
gi|318078243|ref|ZP_07985575.1| transcriptional regulatory protein [Streptomyces sp. SA3_actF]
gi|302429677|gb|EFL01493.1| two-component system response regulator [Streptomyces sp. SPB78]
Length=266
Score = 286 bits (733), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 145/222 (66%), Positives = 175/222 (79%), Gaps = 2/222 (0%)
Query 4 LLLLTSELYPDP-VLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGLCR 62
LLLLT+ L P VLPAL LL H VR APAE +L++ AD +LVD R DL R LC+
Sbjct 4 LLLLTNALQPSTEVLPALGLLLHNVRVAPAEGPALVDTPGADVILVDGRRDLPQVRSLCQ 63
Query 63 LLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLADQE 122
LL STG P+L +V+EGGL AV+ADWG+D++LL + GPAE++ARLRL GRR + AD
Sbjct 64 LLRSTGPGCPLLLIVTEGGLAAVTADWGVDDVLLDTAGPAEVEARLRLATGRRQNAADDS 123
Query 123 SLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGYD 182
+ ++ G+L +DE TY+A+L+GR LDLT+KEFELLKYLAQH GRVFTRAQLL EVWGYD
Sbjct 124 PM-EIRNGDLSVDEATYSAKLKGRVLDLTFKEFELLKYLAQHPGRVFTRAQLLQEVWGYD 182
Query 183 FFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPAR 224
+FGGTRTVDVHVRRLRAKLGPEHE+LIGTVRNVGY+ V P +
Sbjct 183 YFGGTRTVDVHVRRLRAKLGPEHESLIGTVRNVGYRFVTPEK 224
>gi|333025495|ref|ZP_08453559.1| putative transcriptional regulatory protein [Streptomyces sp.
Tu6071]
gi|332745347|gb|EGJ75788.1| putative transcriptional regulatory protein [Streptomyces sp.
Tu6071]
Length=266
Score = 286 bits (733), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 146/222 (66%), Positives = 175/222 (79%), Gaps = 2/222 (0%)
Query 4 LLLLTSELYPDP-VLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGLCR 62
LLLLT+ L P VLPAL LL H VR APAE +L++ AD +LVD R DL R LC+
Sbjct 4 LLLLTNALQPSTEVLPALGLLLHNVRVAPAEGPALVDTPGADVILVDGRRDLPQVRSLCQ 63
Query 63 LLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLADQE 122
LL STG P+L VV+EGGL AV+ADWG+D++LL + GPAE++ARLRL GRR + AD
Sbjct 64 LLRSTGPGCPLLLVVTEGGLAAVTADWGVDDVLLDTAGPAEVEARLRLATGRRQNAADDS 123
Query 123 SLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGYD 182
+ ++ G+L +DE TY+A+L+GR LDLT+KEFELLKYLAQH GRVFTRAQLL EVWGYD
Sbjct 124 PM-EIRNGDLSVDEATYSAKLKGRVLDLTFKEFELLKYLAQHPGRVFTRAQLLQEVWGYD 182
Query 183 FFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPAR 224
+FGGTRTVDVHVRRLRAKLGPEHE+LIGTVRNVGY+ V P +
Sbjct 183 YFGGTRTVDVHVRRLRAKLGPEHESLIGTVRNVGYRFVTPEK 224
>gi|302559901|ref|ZP_07312243.1| transcriptional regulatory protein GlnR [Streptomyces griseoflavus
Tu4000]
gi|302477519|gb|EFL40612.1| transcriptional regulatory protein GlnR [Streptomyces griseoflavus
Tu4000]
Length=254
Score = 286 bits (732), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 146/236 (62%), Positives = 182/236 (78%), Gaps = 2/236 (0%)
Query 4 LLLLTSELYPDP-VLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGLCR 62
LLLLT+ L P VLPAL LL H VR APAE +L++ AD +LVD R DL R LC+
Sbjct 4 LLLLTNALQPSTEVLPALGLLLHNVRVAPAEGPALVDTPGADVILVDGRRDLPQVRSLCQ 63
Query 63 LLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLADQE 122
LL STG P++ VV+EGGL AV+ADWG+D++LL + GPAE++ARLRL +GR+ + + +
Sbjct 64 LLRSTGPGCPLVLVVTEGGLAAVTADWGIDDVLLDTAGPAEVEARLRLAMGRQ-QIVNDD 122
Query 123 SLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGYD 182
S ++ G+L +DE TY+A+L+GR LDLT+KEFELLKYLAQH GRVFTRAQLL EVWGYD
Sbjct 123 SPMEIRNGDLSVDEATYSAKLKGRVLDLTFKEFELLKYLAQHPGRVFTRAQLLQEVWGYD 182
Query 183 FFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGRPPAADPDDEDAD 238
+FGGTRTVDVHVRRLRAKLGPEHE+LIGTVRNVGY+ V P + PA +D ++
Sbjct 183 YFGGTRTVDVHVRRLRAKLGPEHESLIGTVRNVGYRFVTPEKPEKPARAAEDAKSE 238
>gi|295837511|ref|ZP_06824444.1| transcriptional regulatory protein GlnR [Streptomyces sp. SPB74]
gi|197697937|gb|EDY44870.1| transcriptional regulatory protein GlnR [Streptomyces sp. SPB74]
Length=266
Score = 286 bits (732), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 146/222 (66%), Positives = 175/222 (79%), Gaps = 2/222 (0%)
Query 4 LLLLTSELYPDP-VLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGLCR 62
LLLLT+ L P VLPAL LL H VR APAE +L++ AD +LVD R DL R LC+
Sbjct 4 LLLLTNALQPSTEVLPALGLLLHNVRVAPAEGPALVDTPGADVILVDGRRDLPQVRSLCQ 63
Query 63 LLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLADQE 122
LL STG P+L VV+EGGL AV+ADWG+D++LL + GPAE++ARLRL GRR + AD
Sbjct 64 LLRSTGPGCPLLLVVTEGGLAAVTADWGVDDVLLDTAGPAEVEARLRLATGRRQNAADDS 123
Query 123 SLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGYD 182
+ ++ G+L +DE TY+A+L+GR LDLT+KEFELLKYLAQH GRVFTRAQLL EVWGYD
Sbjct 124 PM-EIRNGDLSVDEATYSAKLKGRVLDLTFKEFELLKYLAQHPGRVFTRAQLLQEVWGYD 182
Query 183 FFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPAR 224
+FGGTRTVDVHVRRLRAKLGPEHE+LIGTVRNVGY+ V P +
Sbjct 183 YFGGTRTVDVHVRRLRAKLGPEHESLIGTVRNVGYRFVTPEK 224
>gi|258655089|ref|YP_003204245.1| winged helix family two component transcriptional regulator [Nakamurella
multipartita DSM 44233]
gi|258558314|gb|ACV81256.1| putative two component transcriptional regulator, winged helix
family [Nakamurella multipartita DSM 44233]
Length=232
Score = 286 bits (731), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 143/223 (65%), Positives = 180/223 (81%), Gaps = 3/223 (1%)
Query 2 LELLLLTSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGLC 61
+ELLLLT++ P VLPA+ LLP +R+A EA+SL+ +G D +L+DAR+DL++ R LC
Sbjct 1 MELLLLTTDPSPTSVLPAVDLLPIRIRSAAPEAASLVTSGPYDLLLLDARHDLAAARTLC 60
Query 62 RLLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLADQ 121
RLL + G ++ +LA+V+EGG+VA+ +WG+ +++L S GPAE+ ARLRL+ R + A+
Sbjct 61 RLLGADGLAVSILAIVTEGGMVAIGPEWGVSDVVLASAGPAEVHARLRLLAARTSNSANS 120
Query 122 ESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGY 181
G +SLG+L I+E TYTARLRGRPL+LTYKEFELLK+LAQH GRVFTR QL+ EVWGY
Sbjct 121 ---GLISLGDLTIEEDTYTARLRGRPLELTYKEFELLKFLAQHPGRVFTREQLVTEVWGY 177
Query 182 DFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPAR 224
DFFGGTRTVDVHVRRLRAKLG EHEALIGTVRNVGYK V PAR
Sbjct 178 DFFGGTRTVDVHVRRLRAKLGAEHEALIGTVRNVGYKMVPPAR 220
>gi|329936248|ref|ZP_08286041.1| transcriptional regulatory protein [Streptomyces griseoaurantiacus
M045]
gi|329304358|gb|EGG48238.1| transcriptional regulatory protein [Streptomyces griseoaurantiacus
M045]
Length=268
Score = 285 bits (730), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 149/243 (62%), Positives = 186/243 (77%), Gaps = 4/243 (1%)
Query 4 LLLLTSELYPDP-VLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGLCR 62
LLLLT+ L P VLPAL LL H+VR APAE +L++ ADA+L+D R DL R LC+
Sbjct 4 LLLLTNALQPSAEVLPALGLLLHSVRVAPAEGPALVDTPGADAILIDGRRDLPQVRSLCQ 63
Query 63 LLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLADQE 122
LL STG P++ VV+EGGL AV+ADWG+D++LL + GPAE++ARLRL +GR+ +A +
Sbjct 64 LLRSTGPGCPLVLVVTEGGLAAVTADWGIDDVLLDTAGPAEVEARLRLAMGRQ-QIAGDD 122
Query 123 SLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGYD 182
S ++ G+L +DE TY+A+L+GR LDLT+KEFELLKYLAQH GRVFTRAQLL EVWGYD
Sbjct 123 SPMEIRNGDLSVDEATYSAKLKGRVLDLTFKEFELLKYLAQHPGRVFTRAQLLQEVWGYD 182
Query 183 FFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGR--PPAADPDDEDADPG 240
+FGGTRTVDVHVRRLRAKLGPEHE+LIGTVRNVGY+ V P + P + +DA G
Sbjct 183 YFGGTRTVDVHVRRLRAKLGPEHESLIGTVRNVGYRFVTPEKPERTQPGERAEKQDAQGG 242
Query 241 RDG 243
+G
Sbjct 243 PEG 245
>gi|296268442|ref|YP_003651074.1| putative winged helix family two component transcriptional regulator
[Thermobispora bispora DSM 43833]
gi|296091229|gb|ADG87181.1| putative two component transcriptional regulator, winged helix
family [Thermobispora bispora DSM 43833]
Length=251
Score = 285 bits (729), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 144/223 (65%), Positives = 181/223 (82%), Gaps = 2/223 (0%)
Query 4 LLLLTSELYPDP-VLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGLCR 62
LLLLT+ L P +LPAL LL H VR APAEAS+L++A ADA+LVDAR +L + LCR
Sbjct 4 LLLLTNALEPSTEILPALGLLLHPVRVAPAEASALIDAPPADAILVDARRELIHAKSLCR 63
Query 63 LLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLADQE 122
LL +TG + P++A+V+EG L A++A+WG+D+++L S GPAE++ARLRL +G+ ++
Sbjct 64 LLRTTGLTAPLIAIVTEGSLAAINAEWGVDDVVLESAGPAEVEARLRLAIGKLSTSEAEK 123
Query 123 SLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGYD 182
+ G++ G+L IDE TYTAR+RGR LDLT+KEFELLKYLAQH GRVFTRAQLL EVWGYD
Sbjct 124 APGEIRSGDLSIDEATYTARIRGRVLDLTFKEFELLKYLAQHPGRVFTRAQLLQEVWGYD 183
Query 183 FFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARG 225
+FGGTRTVDVHVRRLRAKLG E+E+LIGTVRNVGY+ V P RG
Sbjct 184 YFGGTRTVDVHVRRLRAKLGSEYESLIGTVRNVGYRFV-PDRG 225
>gi|297200649|ref|ZP_06918046.1| two-component system response regulator [Streptomyces sviceus
ATCC 29083]
gi|197709784|gb|EDY53818.1| two-component system response regulator [Streptomyces sviceus
ATCC 29083]
Length=255
Score = 285 bits (729), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 143/223 (65%), Positives = 177/223 (80%), Gaps = 2/223 (0%)
Query 4 LLLLTSELYPDP-VLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGLCR 62
LLLLT+ L P VLPAL LL H VR APAE +L++ AD +L+D R DL R LC+
Sbjct 4 LLLLTNALQPSTEVLPALGLLLHNVRVAPAEGPALVDTPGADVILIDGRRDLPQVRSLCQ 63
Query 63 LLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRRGDLADQE 122
LL STG P++ VV+EGGL AV+ADWG+D++LL + GPAE++ARLRL +GR+ ++D
Sbjct 64 LLRSTGPGCPLILVVTEGGLAAVTADWGIDDVLLDTAGPAEVEARLRLAMGRQQIVSDDS 123
Query 123 SLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGYD 182
+ ++ G+L +DE TY+A+L+GR LDLT+KEFELLKYLAQH GRVFTRAQLL EVWGYD
Sbjct 124 PM-EIRNGDLSVDEATYSAKLKGRVLDLTFKEFELLKYLAQHPGRVFTRAQLLQEVWGYD 182
Query 183 FFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARG 225
+FGGTRTVDVHVRRLRAKLGPEHE+LIGTVRNVGY+ V P +G
Sbjct 183 YFGGTRTVDVHVRRLRAKLGPEHESLIGTVRNVGYRFVTPEKG 225
Lambda K H
0.318 0.139 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 374688414660
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40