BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0823c Length=389 Score E Sequences producing significant alignments: (Bits) Value gi|15607963|ref|NP_215338.1| transcriptional regulatory protein ... 786 0.0 gi|289573441|ref|ZP_06453668.1| transcriptional regulator [Mycob... 782 0.0 gi|31792011|ref|NP_854504.1| transcriptional regulatory protein ... 780 0.0 gi|167967511|ref|ZP_02549788.1| hypothetical transcriptional reg... 761 0.0 gi|289744547|ref|ZP_06503925.1| transcriptional regulatory prote... 759 0.0 gi|289752872|ref|ZP_06512250.1| LOW QUALITY PROTEIN: transcripti... 721 0.0 gi|296166415|ref|ZP_06848847.1| dihydrouridine synthase [Mycobac... 694 0.0 gi|183984825|ref|YP_001853116.1| transcriptional regulator [Myco... 673 0.0 gi|254363760|ref|ZP_04979806.1| hypothetical transcriptional reg... 667 0.0 gi|118616290|ref|YP_904622.1| transcriptional regulator [Mycobac... 667 0.0 gi|342860303|ref|ZP_08716954.1| dihydrouridine synthase [Mycobac... 660 0.0 gi|254820536|ref|ZP_05225537.1| dihydrouridine synthase [Mycobac... 654 0.0 gi|254773708|ref|ZP_05215224.1| dihydrouridine synthase [Mycobac... 652 0.0 gi|118466583|ref|YP_880044.1| dihydrouridine synthase [Mycobacte... 650 0.0 gi|336458343|gb|EGO37322.1| putative TIM-barrel protein, nifR3 f... 650 0.0 gi|41406755|ref|NP_959591.1| hypothetical protein MAP0657c [Myco... 646 0.0 gi|240171884|ref|ZP_04750543.1| transcriptional regulator [Mycob... 637 1e-180 gi|333992167|ref|YP_004524781.1| transcriptional regulator [Myco... 635 4e-180 gi|15828169|ref|NP_302432.1| NifR3/Smm1 family transcriptional r... 622 4e-176 gi|145222259|ref|YP_001132937.1| nifR3 family TIM-barrel protein... 621 7e-176 gi|169627854|ref|YP_001701503.1| tRNA-dihydrouridine synthase [M... 614 9e-174 gi|120406034|ref|YP_955863.1| nifR3 family TIM-barrel protein [M... 605 3e-171 gi|118473981|ref|YP_890003.1| tRNA-dihydrouridine synthase [Myco... 604 8e-171 gi|108801475|ref|YP_641672.1| dihydrouridine synthase TIM-barrel... 594 8e-168 gi|315442689|ref|YP_004075568.1| hypothetical protein Mspyr1_104... 594 8e-168 gi|126437460|ref|YP_001073151.1| nifR3 family TIM-barrel protein... 592 4e-167 gi|262203780|ref|YP_003274988.1| hypothetical protein Gbro_3919 ... 585 4e-165 gi|333918428|ref|YP_004492009.1| putative tRNA-dihydrouridine sy... 575 6e-162 gi|111021839|ref|YP_704811.1| tRNA-dihydrouridine synthase [Rhod... 573 2e-161 gi|326384894|ref|ZP_08206569.1| TIM-barrel protein, nifR3 family... 572 3e-161 gi|226364360|ref|YP_002782142.1| tRNA-dihydrouridine synthase [R... 571 7e-161 gi|312138334|ref|YP_004005670.1| tRNA-dihydrouridine synthase [R... 561 5e-158 gi|226308278|ref|YP_002768238.1| tRNA-dihydrouridine synthase [R... 560 1e-157 gi|319950652|ref|ZP_08024556.1| TIM-barrel protein, nifR3 family... 558 5e-157 gi|296141212|ref|YP_003648455.1| hypothetical protein Tpau_3537 ... 554 1e-155 gi|23308951|ref|NP_601768.2| TIM-barrel containing enzyme [Coryn... 543 2e-152 gi|213966461|ref|ZP_03394635.1| dihydrouridine synthase TIM-barr... 543 2e-152 gi|68535448|ref|YP_250153.1| hypothetical protein jk0383 [Coryne... 539 3e-151 gi|343926086|ref|ZP_08765598.1| putative tRNA-dihydrouridine syn... 535 4e-150 gi|25029017|ref|NP_739071.1| putative transcription regulator [C... 535 7e-150 gi|260578340|ref|ZP_05846255.1| tRNA-dihydrouridine synthase [Co... 532 3e-149 gi|227506387|ref|ZP_03936436.1| possible tRNA-dihydrouridine syn... 531 5e-149 gi|336324665|ref|YP_004604631.1| putative dihydrouridine synthas... 530 2e-148 gi|227833973|ref|YP_002835680.1| hypothetical protein cauri_2149... 521 1e-145 gi|172041286|ref|YP_001801000.1| hypothetical protein cur_1606 [... 520 2e-145 gi|306836817|ref|ZP_07469775.1| dihydrouridine synthase [Coryneb... 520 2e-145 gi|145296565|ref|YP_001139386.1| hypothetical protein cgR_2473 [... 517 1e-144 gi|300790789|ref|YP_003771080.1| dihydrouridine synthase [Amycol... 516 2e-144 gi|340532481|gb|AEK47686.1| dihydrouridine synthase [Amycolatops... 516 3e-144 gi|296118884|ref|ZP_06837457.1| putative tRNA-dihydrouridine syn... 515 4e-144 >gi|15607963|ref|NP_215338.1| transcriptional regulatory protein [Mycobacterium tuberculosis H37Rv] gi|15840236|ref|NP_335273.1| NifR3/SMM1 family protein [Mycobacterium tuberculosis CDC1551] gi|148660601|ref|YP_001282124.1| NifR3/SMM1 family protein [Mycobacterium tuberculosis H37Ra] 50 more sequence titles Length=389 Score = 786 bits (2029), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/389 (100%), Positives = 389/389 (100%), Gaps = 0/389 (0%) Query 1 MSRRRAIQPSPALRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEM 60 MSRRRAIQPSPALRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEM Sbjct 1 MSRRRAIQPSPALRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEM 60 Query 61 VTARALIERHPVTMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGC 120 VTARALIERHPVTMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGC Sbjct 61 VTARALIERHPVTMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGC 120 Query 121 PVPKVTKRGGGAALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRI 180 PVPKVTKRGGGAALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRI Sbjct 121 PVPKVTKRGGGAALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRI 180 Query 181 AEAEGAAAVALHARTAAQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTT 240 AEAEGAAAVALHARTAAQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTT Sbjct 181 AEAEGAAAVALHARTAAQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTT 240 Query 241 GCDGVVIGRGCLGRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGM 300 GCDGVVIGRGCLGRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGM Sbjct 241 GCDGVVIGRGCLGRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGM 300 Query 301 RDIRKHIAWYLHGFPAGSALRRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSP 360 RDIRKHIAWYLHGFPAGSALRRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSP Sbjct 301 RDIRKHIAWYLHGFPAGSALRRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSP 360 Query 361 ARVALPDGWLTDPDDCRVPEGADAMGSGG 389 ARVALPDGWLTDPDDCRVPEGADAMGSGG Sbjct 361 ARVALPDGWLTDPDDCRVPEGADAMGSGG 389 >gi|289573441|ref|ZP_06453668.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|339630889|ref|YP_004722531.1| transcriptional regulator [Mycobacterium africanum GM041182] gi|289537872|gb|EFD42450.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|339330245|emb|CCC25905.1| putative transcriptional regulatory protein [Mycobacterium africanum GM041182] Length=389 Score = 782 bits (2020), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/389 (99%), Positives = 388/389 (99%), Gaps = 0/389 (0%) Query 1 MSRRRAIQPSPALRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEM 60 MSRRRAIQPSPALRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEM Sbjct 1 MSRRRAIQPSPALRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEM 60 Query 61 VTARALIERHPVTMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGC 120 VTARALIERHPVTMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGC Sbjct 61 VTARALIERHPVTMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGC 120 Query 121 PVPKVTKRGGGAALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRI 180 PVPKVTKRG GAALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRI Sbjct 121 PVPKVTKRGCGAALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRI 180 Query 181 AEAEGAAAVALHARTAAQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTT 240 AEAEGAAAVALHARTAAQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTT Sbjct 181 AEAEGAAAVALHARTAAQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTT 240 Query 241 GCDGVVIGRGCLGRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGM 300 GCDGVVIGRGCLGRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGM Sbjct 241 GCDGVVIGRGCLGRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGM 300 Query 301 RDIRKHIAWYLHGFPAGSALRRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSP 360 RDIRKHIAWYLHGFPAGSALRRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSP Sbjct 301 RDIRKHIAWYLHGFPAGSALRRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSP 360 Query 361 ARVALPDGWLTDPDDCRVPEGADAMGSGG 389 ARVALPDGWLTDPDDCRVPEGADAMGSGG Sbjct 361 ARVALPDGWLTDPDDCRVPEGADAMGSGG 389 >gi|31792011|ref|NP_854504.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97] gi|121636747|ref|YP_976970.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224989218|ref|YP_002643905.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|31617598|emb|CAD93708.1| POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium bovis AF2122/97] gi|121492394|emb|CAL70862.1| Possible transcriptional regulatory protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224772331|dbj|BAH25137.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|341600763|emb|CCC63434.1| possible transcriptional regulatory protein [Mycobacterium bovis BCG str. Moreau RDJ] Length=389 Score = 780 bits (2015), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/389 (99%), Positives = 387/389 (99%), Gaps = 0/389 (0%) Query 1 MSRRRAIQPSPALRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEM 60 MSRRRAIQPSPALRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEM Sbjct 1 MSRRRAIQPSPALRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEM 60 Query 61 VTARALIERHPVTMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGC 120 VTARALIERHPVTMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGC Sbjct 61 VTARALIERHPVTMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGC 120 Query 121 PVPKVTKRGGGAALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRI 180 PVPKVTKRG GAALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRI Sbjct 121 PVPKVTKRGCGAALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRI 180 Query 181 AEAEGAAAVALHARTAAQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTT 240 AEAEGAAAVALHARTAAQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTT Sbjct 181 AEAEGAAAVALHARTAAQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTT 240 Query 241 GCDGVVIGRGCLGRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGM 300 GCDGVVIGRGCLGRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGM Sbjct 241 GCDGVVIGRGCLGRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGM 300 Query 301 RDIRKHIAWYLHGFPAGSALRRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSP 360 RDIRKHIAWYLHGFPAGSALRRALAMVKT DELDCLLDRLDGTVPFPDSATGARGRQGSP Sbjct 301 RDIRKHIAWYLHGFPAGSALRRALAMVKTLDELDCLLDRLDGTVPFPDSATGARGRQGSP 360 Query 361 ARVALPDGWLTDPDDCRVPEGADAMGSGG 389 ARVALPDGWLTDPDDCRVPEGADAMGSGG Sbjct 361 ARVALPDGWLTDPDDCRVPEGADAMGSGG 389 >gi|167967511|ref|ZP_02549788.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis H37Ra] gi|306806659|ref|ZP_07443327.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007] gi|308397233|ref|ZP_07492455.2| transcriptional regulator [Mycobacterium tuberculosis SUMu012] gi|308346868|gb|EFP35719.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007] gi|308366954|gb|EFP55805.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012] gi|323720747|gb|EGB29819.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A] Length=377 Score = 761 bits (1964), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/377 (99%), Positives = 377/377 (100%), Gaps = 0/377 (0%) Query 13 LRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHPV 72 +RIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHPV Sbjct 1 MRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHPV 60 Query 73 TMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGGA 132 TMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGGA Sbjct 61 TMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGGA 120 Query 133 ALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVALH 192 ALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVALH Sbjct 121 ALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVALH 180 Query 193 ARTAAQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTTGCDGVVIGRGCL 252 ARTAAQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTTGCDGVVIGRGCL Sbjct 181 ARTAAQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTTGCDGVVIGRGCL 240 Query 253 GRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAWYLH 312 GRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAWYLH Sbjct 241 GRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAWYLH 300 Query 313 GFPAGSALRRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSPARVALPDGWLTD 372 GFPAGSALRRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSPARVALPDGWLTD Sbjct 301 GFPAGSALRRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSPARVALPDGWLTD 360 Query 373 PDDCRVPEGADAMGSGG 389 PDDCRVPEGADAMGSGG Sbjct 361 PDDCRVPEGADAMGSGG 377 >gi|289744547|ref|ZP_06503925.1| transcriptional regulatory protein [Mycobacterium tuberculosis 02_1987] gi|289756910|ref|ZP_06516288.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85] gi|294996303|ref|ZP_06801994.1| transcriptional regulator [Mycobacterium tuberculosis 210] gi|289685075|gb|EFD52563.1| transcriptional regulatory protein [Mycobacterium tuberculosis 02_1987] gi|289712474|gb|EFD76486.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85] gi|326904957|gb|EGE51890.1| transcriptional regulator [Mycobacterium tuberculosis W-148] gi|339293839|gb|AEJ45950.1| transcriptional regulator [Mycobacterium tuberculosis CCDC5079] gi|339297479|gb|AEJ49589.1| transcriptional regulator [Mycobacterium tuberculosis CCDC5180] Length=388 Score = 759 bits (1960), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/389 (99%), Positives = 388/389 (99%), Gaps = 1/389 (0%) Query 1 MSRRRAIQPSPALRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEM 60 MSRRRAIQPSPALRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEM Sbjct 1 MSRRRAIQPSPALRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEM 60 Query 61 VTARALIERHPVTMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGC 120 VTARALIERHPVTMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGC Sbjct 61 VTARALIERHPVTMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGC 120 Query 121 PVPKVTKRGGGAALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRI 180 PVPKVTKRGGGAALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRI Sbjct 121 PVPKVTKRGGGAALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRI 180 Query 181 AEAEGAAAVALHARTAAQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTT 240 AEAEGAAAVALHARTAAQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTT Sbjct 181 AEAEGAAAVALHARTAAQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTT 240 Query 241 GCDGVVIGRGCLGRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGM 300 GCDGVVIGRGCLGRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGM Sbjct 241 GCDGVVIGRGCLGRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGM 300 Query 301 RDIRKHIAWYLHGFPAGSALRRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSP 360 RDIRKHIAWYLHGFPAGSA RRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSP Sbjct 301 RDIRKHIAWYLHGFPAGSA-RRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSP 359 Query 361 ARVALPDGWLTDPDDCRVPEGADAMGSGG 389 ARVALPDGWLTDPDDCRVPEGADAMGSGG Sbjct 360 ARVALPDGWLTDPDDCRVPEGADAMGSGG 388 >gi|289752872|ref|ZP_06512250.1| LOW QUALITY PROTEIN: transcriptional regulatory protein [Mycobacterium tuberculosis EAS054] gi|289693459|gb|EFD60888.1| LOW QUALITY PROTEIN: transcriptional regulatory protein [Mycobacterium tuberculosis EAS054] Length=362 Score = 721 bits (1860), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/359 (99%), Positives = 357/359 (99%), Gaps = 0/359 (0%) Query 31 GVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHPVTMHMTTFSADESPRSLQL 90 G ++AFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHPVTMHMTTFSADESPRSLQL Sbjct 4 GSGDIAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHPVTMHMTTFSADESPRSLQL 63 Query 91 YTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGGAALPFKRRLFGQIVAAAVR 150 YTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGGAALPFKRRLFGQIVAAAVR Sbjct 64 YTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGGAALPFKRRLFGQIVAAAVR 123 Query 151 ATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVALHARTAAQRYSGTADWEQIA 210 ATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVALHARTAAQRYSGTADWEQIA Sbjct 124 ATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVALHARTAAQRYSGTADWEQIA 183 Query 211 RLKQHVRTIPVLGNGDIYDAGDALAMMSTTGCDGVVIGRGCLGRPWLFAELSAAFTGSPA 270 RLKQHVRTIPVLGNGDIYDAGDALAMMSTTGCDGVVIGRGCLGRPWLFAELSAAFTGSPA Sbjct 184 RLKQHVRTIPVLGNGDIYDAGDALAMMSTTGCDGVVIGRGCLGRPWLFAELSAAFTGSPA 243 Query 271 PTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAWYLHGFPAGSALRRALAMVKTF 330 PTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAWYLHGFPAGSALRRALAMVKTF Sbjct 244 PTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAWYLHGFPAGSALRRALAMVKTF 303 Query 331 DELDCLLDRLDGTVPFPDSATGARGRQGSPARVALPDGWLTDPDDCRVPEGADAMGSGG 389 DELDCLLDRLDGTVPFPDSATGARGRQGSPARVALPDGWLTDPDDCRVPEGADAMGSGG Sbjct 304 DELDCLLDRLDGTVPFPDSATGARGRQGSPARVALPDGWLTDPDDCRVPEGADAMGSGG 362 >gi|296166415|ref|ZP_06848847.1| dihydrouridine synthase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898176|gb|EFG77750.1| dihydrouridine synthase [Mycobacterium parascrofulaceum ATCC BAA-614] Length=377 Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/377 (90%), Positives = 353/377 (94%), Gaps = 0/377 (0%) Query 13 LRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHPV 72 +RIGPI LASPVVLAPMAGVTNVAFR LCR+LE+SKVGTVSGLYVCEMVTARAL+ERHPV Sbjct 1 MRIGPITLASPVVLAPMAGVTNVAFRTLCRELERSKVGTVSGLYVCEMVTARALVERHPV 60 Query 73 TMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGGA 132 TMHMTTF+ DESPRSLQLYTVDP TTYAAA+MI EGLADHIDMNFGCPVPKVTKRGGGA Sbjct 61 TMHMTTFAPDESPRSLQLYTVDPATTYAAAKMIVDEGLADHIDMNFGCPVPKVTKRGGGA 120 Query 133 ALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVALH 192 ALP+KRRLFGQIVAAAVRATEG IPVTVKFR+GIDD HHTHLDAGRIAE+EGAAAVALH Sbjct 121 ALPYKRRLFGQIVAAAVRATEGARIPVTVKFRVGIDDEHHTHLDAGRIAESEGAAAVALH 180 Query 193 ARTAAQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTTGCDGVVIGRGCL 252 ARTAAQRYSGTADWEQIA LKQHVRTIPVLGNGDIYDA DAL MM+TTGCDGVVIGRGCL Sbjct 181 ARTAAQRYSGTADWEQIALLKQHVRTIPVLGNGDIYDASDALTMMATTGCDGVVIGRGCL 240 Query 253 GRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAWYLH 312 GRPWLFAELSAAFT SPAPTPPTLGEVADI+RRHG LLAAHFGEDKGMRDIRKHI WYLH Sbjct 241 GRPWLFAELSAAFTDSPAPTPPTLGEVADIVRRHGKLLAAHFGEDKGMRDIRKHIGWYLH 300 Query 313 GFPAGSALRRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSPARVALPDGWLTD 372 GFPAGS LRRALAMVKT DELD LL +LDGTVPFPD+A+G RGRQGSPARVALP+GWLTD Sbjct 301 GFPAGSELRRALAMVKTLDELDSLLSQLDGTVPFPDAASGPRGRQGSPARVALPEGWLTD 360 Query 373 PDDCRVPEGADAMGSGG 389 PDDC VP GAD M SGG Sbjct 361 PDDCTVPAGADVMHSGG 377 >gi|183984825|ref|YP_001853116.1| transcriptional regulator [Mycobacterium marinum M] gi|183178151|gb|ACC43261.1| transcriptional regulator [Mycobacterium marinum M] Length=377 Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/377 (90%), Positives = 354/377 (94%), Gaps = 0/377 (0%) Query 13 LRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHPV 72 +RIGPIELASPVVLAPMAGVTNVAFR LCR+LEQ+KVGTVSGLYVCEMVTARAL+ERHPV Sbjct 1 MRIGPIELASPVVLAPMAGVTNVAFRTLCRELEQAKVGTVSGLYVCEMVTARALVERHPV 60 Query 73 TMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGGA 132 TMHMTTF+ DESPRSLQLYTVDPDTTYAAARMIA EGLADHIDMNFGCPVPKVTKRGGGA Sbjct 61 TMHMTTFAPDESPRSLQLYTVDPDTTYAAARMIAEEGLADHIDMNFGCPVPKVTKRGGGA 120 Query 133 ALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVALH 192 ALPFKRRLFGQIVAAAVR EGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVALH Sbjct 121 ALPFKRRLFGQIVAAAVRGVEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVALH 180 Query 193 ARTAAQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTTGCDGVVIGRGCL 252 ARTAAQRYSGTADWEQIA LKQHVRT+PVLGNGDIYDA DALAMM+ TGCDGVVIGRGCL Sbjct 181 ARTAAQRYSGTADWEQIALLKQHVRTVPVLGNGDIYDASDALAMMAATGCDGVVIGRGCL 240 Query 253 GRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAWYLH 312 GRPWLFAELSAAFTG+P PTPPTLGEV DIIRRHG LLAAHFGEDKGMRDIRKH+AWYLH Sbjct 241 GRPWLFAELSAAFTGNPGPTPPTLGEVTDIIRRHGELLAAHFGEDKGMRDIRKHVAWYLH 300 Query 313 GFPAGSALRRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSPARVALPDGWLTD 372 GFPAGS LRRALA+VKT DELD LL RLD V FP++A G RGRQGSP+RVALP+GWL D Sbjct 301 GFPAGSDLRRALALVKTLDELDSLLTRLDPDVAFPEAANGPRGRQGSPSRVALPEGWLDD 360 Query 373 PDDCRVPEGADAMGSGG 389 PDDC+VP+GAD M SGG Sbjct 361 PDDCQVPDGADVMHSGG 377 >gi|254363760|ref|ZP_04979806.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis str. Haarlem] gi|134149274|gb|EBA41319.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis str. Haarlem] Length=339 Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/331 (100%), Positives = 331/331 (100%), Gaps = 0/331 (0%) Query 1 MSRRRAIQPSPALRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEM 60 MSRRRAIQPSPALRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEM Sbjct 1 MSRRRAIQPSPALRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEM 60 Query 61 VTARALIERHPVTMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGC 120 VTARALIERHPVTMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGC Sbjct 61 VTARALIERHPVTMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGC 120 Query 121 PVPKVTKRGGGAALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRI 180 PVPKVTKRGGGAALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRI Sbjct 121 PVPKVTKRGGGAALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRI 180 Query 181 AEAEGAAAVALHARTAAQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTT 240 AEAEGAAAVALHARTAAQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTT Sbjct 181 AEAEGAAAVALHARTAAQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTT 240 Query 241 GCDGVVIGRGCLGRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGM 300 GCDGVVIGRGCLGRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGM Sbjct 241 GCDGVVIGRGCLGRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGM 300 Query 301 RDIRKHIAWYLHGFPAGSALRRALAMVKTFD 331 RDIRKHIAWYLHGFPAGSALRRALAMVKTFD Sbjct 301 RDIRKHIAWYLHGFPAGSALRRALAMVKTFD 331 >gi|118616290|ref|YP_904622.1| transcriptional regulator [Mycobacterium ulcerans Agy99] gi|118568400|gb|ABL03151.1| transcriptional regulator [Mycobacterium ulcerans Agy99] Length=377 Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/377 (89%), Positives = 353/377 (94%), Gaps = 0/377 (0%) Query 13 LRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHPV 72 +RIGPIELASPV LAPMAGVTNVAFR LCR+LE++KVGTVSGLYVCEMVTARAL+ERHPV Sbjct 1 MRIGPIELASPVALAPMAGVTNVAFRTLCRELEEAKVGTVSGLYVCEMVTARALVERHPV 60 Query 73 TMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGGA 132 TMHMTTF+ DESPRSLQLYTVDPDTTYAAARMIA EGLADHIDMNFGCPVPKVTKRGGGA Sbjct 61 TMHMTTFAPDESPRSLQLYTVDPDTTYAAARMIAEEGLADHIDMNFGCPVPKVTKRGGGA 120 Query 133 ALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVALH 192 ALPFKRRLFGQIVAAAVR EGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVALH Sbjct 121 ALPFKRRLFGQIVAAAVRGVEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVALH 180 Query 193 ARTAAQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTTGCDGVVIGRGCL 252 ARTAAQRYSGTADWEQIA LKQHVRT+PVLGNGDIYDA DALAM++ TGCDGVVIGRGCL Sbjct 181 ARTAAQRYSGTADWEQIALLKQHVRTVPVLGNGDIYDASDALAMIAATGCDGVVIGRGCL 240 Query 253 GRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAWYLH 312 GRPWLFAELSAAFTG+P PTPPTLGEV DIIRRHG LLAAHFGEDKG+RDIRKH+AWYLH Sbjct 241 GRPWLFAELSAAFTGNPGPTPPTLGEVTDIIRRHGELLAAHFGEDKGVRDIRKHVAWYLH 300 Query 313 GFPAGSALRRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSPARVALPDGWLTD 372 GFPAGS LRRALA+VKT DELD LL RLD V FP++A G RGRQGSP+RVALP+GWL D Sbjct 301 GFPAGSDLRRALALVKTLDELDSLLTRLDPGVAFPEAANGPRGRQGSPSRVALPEGWLDD 360 Query 373 PDDCRVPEGADAMGSGG 389 PDDCRVP+GAD M SGG Sbjct 361 PDDCRVPDGADVMHSGG 377 >gi|342860303|ref|ZP_08716954.1| dihydrouridine synthase [Mycobacterium colombiense CECT 3035] gi|342131958|gb|EGT85199.1| dihydrouridine synthase [Mycobacterium colombiense CECT 3035] Length=377 Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/377 (90%), Positives = 352/377 (94%), Gaps = 0/377 (0%) Query 13 LRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHPV 72 +RIG I LASPVVLAPMAGVTNVAFR LCR+LEQ+KVGTVSGLYVCEMVTARAL+ERHP Sbjct 1 MRIGSIALASPVVLAPMAGVTNVAFRTLCRELEQAKVGTVSGLYVCEMVTARALVERHPA 60 Query 73 TMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGGA 132 TMHMTTF+ADESPRSLQLYTVDP TTYAAA+MIA EGLADHIDMNFGCPVPKVTKRGGG+ Sbjct 61 TMHMTTFAADESPRSLQLYTVDPATTYAAAKMIADEGLADHIDMNFGCPVPKVTKRGGGS 120 Query 133 ALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVALH 192 ALP+KRRLFGQIVAAAVR TEGT IPVTVKFRIGIDD HHTHLDAGRIAEAEGAAAVALH Sbjct 121 ALPYKRRLFGQIVAAAVRGTEGTQIPVTVKFRIGIDDEHHTHLDAGRIAEAEGAAAVALH 180 Query 193 ARTAAQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTTGCDGVVIGRGCL 252 ARTAAQRYSGTADWE+IARLKQ VRTIPVLGNGDIYDA DAL MM++TGCDGVVIGRGCL Sbjct 181 ARTAAQRYSGTADWEEIARLKQQVRTIPVLGNGDIYDASDALTMMASTGCDGVVIGRGCL 240 Query 253 GRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAWYLH 312 GRPWLFAELSAAFTGSP PTPP+LGEVADI+RRHG LLAAHFGE+KGMRDIRKHI WYLH Sbjct 241 GRPWLFAELSAAFTGSPPPTPPSLGEVADIVRRHGQLLAAHFGEEKGMRDIRKHIGWYLH 300 Query 313 GFPAGSALRRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSPARVALPDGWLTD 372 GFPAGS LRRALAMVKT DELD LLDRLDG+VPFPD ATG RGRQGSPARV LP+GWLTD Sbjct 301 GFPAGSELRRALAMVKTLDELDALLDRLDGSVPFPDEATGPRGRQGSPARVVLPEGWLTD 360 Query 373 PDDCRVPEGADAMGSGG 389 PDDC VP GAD M SGG Sbjct 361 PDDCTVPAGADVMHSGG 377 >gi|254820536|ref|ZP_05225537.1| dihydrouridine synthase [Mycobacterium intracellulare ATCC 13950] Length=377 Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/377 (90%), Positives = 351/377 (94%), Gaps = 0/377 (0%) Query 13 LRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHPV 72 +RIG I LASPVVLAPMAGVTNVAFR LCR+LE+SKVGTVSGLYVCEMVTARAL+ERHPV Sbjct 1 MRIGSIALASPVVLAPMAGVTNVAFRTLCRELERSKVGTVSGLYVCEMVTARALVERHPV 60 Query 73 TMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGGA 132 TMHMTTF+ DESPRSLQLYTVDP TTYAAA+MIA EGLADHIDMNFGCPVPKVTKRGGG+ Sbjct 61 TMHMTTFAPDESPRSLQLYTVDPATTYAAAKMIADEGLADHIDMNFGCPVPKVTKRGGGS 120 Query 133 ALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVALH 192 ALP+KRRLFGQIVAAAVRATEGT IPVTVKFRIGIDD HHTHLDAGRIAEAEGAAAVALH Sbjct 121 ALPYKRRLFGQIVAAAVRATEGTQIPVTVKFRIGIDDEHHTHLDAGRIAEAEGAAAVALH 180 Query 193 ARTAAQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTTGCDGVVIGRGCL 252 ARTAAQRYSGTADW++IARLKQHVRTIPVLGNGDIYDA DAL MM+ TGCDGVVIGRGCL Sbjct 181 ARTAAQRYSGTADWDEIARLKQHVRTIPVLGNGDIYDASDALTMMAATGCDGVVIGRGCL 240 Query 253 GRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAWYLH 312 GRPWLFAELSAAFTGSP PTPPTLGEVADI+RRHG LLAAHFGEDKGMRDIRKHIAWYLH Sbjct 241 GRPWLFAELSAAFTGSPPPTPPTLGEVADIVRRHGQLLAAHFGEDKGMRDIRKHIAWYLH 300 Query 313 GFPAGSALRRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSPARVALPDGWLTD 372 GFPAGS LRRALAMVKT DELD LLDRLD VPFPD A+G RGRQGSPARV LP+GWL D Sbjct 301 GFPAGSELRRALAMVKTLDELDRLLDRLDADVPFPDEASGPRGRQGSPARVVLPEGWLDD 360 Query 373 PDDCRVPEGADAMGSGG 389 PDDC VP GAD M SGG Sbjct 361 PDDCTVPAGADVMHSGG 377 >gi|254773708|ref|ZP_05215224.1| dihydrouridine synthase [Mycobacterium avium subsp. avium ATCC 25291] Length=377 Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/377 (89%), Positives = 351/377 (94%), Gaps = 0/377 (0%) Query 13 LRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHPV 72 +RIGPIELASPVVLAPMAGVTNVAFR LCR+LE+ VGTVSGLYVCEMVTARAL+ERHP Sbjct 1 MRIGPIELASPVVLAPMAGVTNVAFRTLCRELERELVGTVSGLYVCEMVTARALVERHPA 60 Query 73 TMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGGA 132 TMHMTTF+ DESPRSLQLYTVDP TTYAAA+MIA EGLADHIDMNFGCPVPKVTKRGGG+ Sbjct 61 TMHMTTFAPDESPRSLQLYTVDPATTYAAAKMIANEGLADHIDMNFGCPVPKVTKRGGGS 120 Query 133 ALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVALH 192 ALP+KRRLFGQIVAAAVRAT+GT+IPVTVKFRIGID+ HHTHLDAGRIAEAEGAAAVALH Sbjct 121 ALPYKRRLFGQIVAAAVRATQGTEIPVTVKFRIGIDEEHHTHLDAGRIAEAEGAAAVALH 180 Query 193 ARTAAQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTTGCDGVVIGRGCL 252 ARTAAQRYSGTADWEQIA LKQ VRTIPVLGNGDIYDA DAL MM+ TGCDGVVIGRGCL Sbjct 181 ARTAAQRYSGTADWEQIALLKQQVRTIPVLGNGDIYDASDALTMMAATGCDGVVIGRGCL 240 Query 253 GRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAWYLH 312 GRPWLFAELSAAFTGSP PTPPTLG+VADI+RRHG LLAAHFGEDKGMRDIRKHIAWYLH Sbjct 241 GRPWLFAELSAAFTGSPPPTPPTLGQVADIVRRHGRLLAAHFGEDKGMRDIRKHIAWYLH 300 Query 313 GFPAGSALRRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSPARVALPDGWLTD 372 GFPAGS LRRALAMVKT DELD LLDRLDG+VPFPD ATG RGRQGSPARV LP+GWL D Sbjct 301 GFPAGSELRRALAMVKTLDELDRLLDRLDGSVPFPDEATGPRGRQGSPARVVLPEGWLDD 360 Query 373 PDDCRVPEGADAMGSGG 389 PDDC VP GAD M SGG Sbjct 361 PDDCTVPAGADVMHSGG 377 >gi|118466583|ref|YP_880044.1| dihydrouridine synthase [Mycobacterium avium 104] gi|118167870|gb|ABK68767.1| dihydrouridine synthase [Mycobacterium avium 104] Length=377 Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/377 (89%), Positives = 351/377 (94%), Gaps = 0/377 (0%) Query 13 LRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHPV 72 +RIGPIELASPVVLAPMAGVTNVAFR LCR+LE+ VGTVSGLYVCEMVTARAL+ERHP Sbjct 1 MRIGPIELASPVVLAPMAGVTNVAFRTLCRELERELVGTVSGLYVCEMVTARALVERHPA 60 Query 73 TMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGGA 132 TMHMTTF+ DESPRSLQLYTVDP TTYAAA+MIA EGLADHIDMNFGCPVPKVTKRGGG+ Sbjct 61 TMHMTTFAPDESPRSLQLYTVDPATTYAAAKMIANEGLADHIDMNFGCPVPKVTKRGGGS 120 Query 133 ALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVALH 192 ALP+KRRLFGQIVAAAVRAT+GT+IPVTVKFRIGID+ HHTHLDAGRIAEAEGAAAVALH Sbjct 121 ALPYKRRLFGQIVAAAVRATQGTEIPVTVKFRIGIDEEHHTHLDAGRIAEAEGAAAVALH 180 Query 193 ARTAAQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTTGCDGVVIGRGCL 252 ARTAAQRYSGTADWEQIA LKQ VRTIPVLGNGDIYDA DAL MM+ TGCDGVVIGRGCL Sbjct 181 ARTAAQRYSGTADWEQIALLKQQVRTIPVLGNGDIYDASDALTMMAATGCDGVVIGRGCL 240 Query 253 GRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAWYLH 312 GRPWLFAELSAAFTGSP PTPPTLG+VADI+RRHG LLAAHFGEDKGMRDIRKHIAWYLH Sbjct 241 GRPWLFAELSAAFTGSPPPTPPTLGQVADIVRRHGRLLAAHFGEDKGMRDIRKHIAWYLH 300 Query 313 GFPAGSALRRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSPARVALPDGWLTD 372 GFPAGS LRRALA+VKT DELD LLDRLDG+VPFPD ATG RGRQGSPARV LP+GWL D Sbjct 301 GFPAGSELRRALAIVKTLDELDRLLDRLDGSVPFPDEATGPRGRQGSPARVVLPEGWLDD 360 Query 373 PDDCRVPEGADAMGSGG 389 PDDC VP GAD M SGG Sbjct 361 PDDCTVPAGADVMHSGG 377 >gi|336458343|gb|EGO37322.1| putative TIM-barrel protein, nifR3 family [Mycobacterium avium subsp. paratuberculosis S397] Length=377 Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/377 (89%), Positives = 350/377 (93%), Gaps = 0/377 (0%) Query 13 LRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHPV 72 +RIGPIELASPVVLAPMAGVTNVAFR LCR+LE+ VGTVSGLYVCEMVTARAL+ERHP Sbjct 1 MRIGPIELASPVVLAPMAGVTNVAFRTLCRELERELVGTVSGLYVCEMVTARALVERHPA 60 Query 73 TMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGGA 132 TMHM TF+ DESPRSLQLYTVDP TTYAAA+MIA EGLADHIDMNFGCPVPKVTKRGGG+ Sbjct 61 TMHMITFAPDESPRSLQLYTVDPATTYAAAKMIADEGLADHIDMNFGCPVPKVTKRGGGS 120 Query 133 ALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVALH 192 ALP+KRRLFGQIVAAAVRAT+GT+IPVTVKFRIGIDD HHTHLDAGRIAEAEGAAAVALH Sbjct 121 ALPYKRRLFGQIVAAAVRATQGTEIPVTVKFRIGIDDEHHTHLDAGRIAEAEGAAAVALH 180 Query 193 ARTAAQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTTGCDGVVIGRGCL 252 ARTAAQRYSGTADWEQIA LKQ VRTIPVLGNGDIYDA DAL MM+ TGCDGVVIGRGCL Sbjct 181 ARTAAQRYSGTADWEQIALLKQQVRTIPVLGNGDIYDASDALTMMAATGCDGVVIGRGCL 240 Query 253 GRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAWYLH 312 GRPWLFAELSAAFTGSP PTPPTLG+VADI+RRHG LLAAHFGEDKGMRDIRKHIAWYLH Sbjct 241 GRPWLFAELSAAFTGSPPPTPPTLGQVADIVRRHGRLLAAHFGEDKGMRDIRKHIAWYLH 300 Query 313 GFPAGSALRRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSPARVALPDGWLTD 372 GFPAGS LRRALAMVKT DELD LLDRLDG+VPFPD ATG RGRQGSPARV LP+GWL D Sbjct 301 GFPAGSELRRALAMVKTLDELDRLLDRLDGSVPFPDEATGPRGRQGSPARVVLPEGWLDD 360 Query 373 PDDCRVPEGADAMGSGG 389 PDDC VP GAD M SGG Sbjct 361 PDDCTVPAGADIMHSGG 377 >gi|41406755|ref|NP_959591.1| hypothetical protein MAP0657c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395105|gb|AAS02974.1| hypothetical protein MAP_0657c [Mycobacterium avium subsp. paratuberculosis K-10] Length=377 Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/377 (89%), Positives = 349/377 (93%), Gaps = 0/377 (0%) Query 13 LRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHPV 72 +RIGPIELASPVVLAPMAGVTNVAFR LCR+LE+ VGTVSGLYV EMVTARAL+ERHP Sbjct 1 MRIGPIELASPVVLAPMAGVTNVAFRTLCRELERELVGTVSGLYVYEMVTARALVERHPA 60 Query 73 TMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGGA 132 TMHM TF+ DESPRSLQLYTVDP TTYAAA+MIA EGLADHIDMNFGCPVPKVTKRGGG+ Sbjct 61 TMHMITFAPDESPRSLQLYTVDPATTYAAAKMIADEGLADHIDMNFGCPVPKVTKRGGGS 120 Query 133 ALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVALH 192 ALP+KRRLFGQIVAAAVRAT+GT+IPVTVKFRIGIDD HHTHLDAGRIAEAEGAAAVALH Sbjct 121 ALPYKRRLFGQIVAAAVRATQGTEIPVTVKFRIGIDDEHHTHLDAGRIAEAEGAAAVALH 180 Query 193 ARTAAQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTTGCDGVVIGRGCL 252 ARTAAQRYSGTADWEQIA LKQ VRTIPVLGNGDIYDA DAL MM+ TGCDGVVIGRGCL Sbjct 181 ARTAAQRYSGTADWEQIALLKQQVRTIPVLGNGDIYDASDALTMMAATGCDGVVIGRGCL 240 Query 253 GRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAWYLH 312 GRPWLFAELSAAFTGSP PTPPTLG+VADI+RRHG LLAAHFGEDKGMRDIRKHIAWYLH Sbjct 241 GRPWLFAELSAAFTGSPPPTPPTLGQVADIVRRHGRLLAAHFGEDKGMRDIRKHIAWYLH 300 Query 313 GFPAGSALRRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSPARVALPDGWLTD 372 GFPAGS LRRALAMVKT DELD LLDRLDG+VPFPD ATG RGRQGSPARV LP+GWL D Sbjct 301 GFPAGSELRRALAMVKTLDELDRLLDRLDGSVPFPDEATGPRGRQGSPARVVLPEGWLDD 360 Query 373 PDDCRVPEGADAMGSGG 389 PDDC VP GAD M SGG Sbjct 361 PDDCTVPAGADIMHSGG 377 >gi|240171884|ref|ZP_04750543.1| transcriptional regulator [Mycobacterium kansasii ATCC 12478] Length=396 Score = 637 bits (1642), Expect = 1e-180, Method: Compositional matrix adjust. Identities = 336/396 (85%), Positives = 351/396 (89%), Gaps = 19/396 (4%) Query 13 LRIGPIELASPVVLAPMAGVTNVAFRALCRQL-------------------EQSKVGTVS 53 +RIG IELASPVVLAPMAGVTNVAFR LCR EQ+KVGTV Sbjct 1 MRIGSIELASPVVLAPMAGVTNVAFRTLCRDFGSMRGDPLRPASPPLRSPREQAKVGTVG 60 Query 54 GLYVCEMVTARALIERHPVTMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADH 113 GLYVCEMVTARAL+ERHPVTMHMTTF+ DESPRSLQLYTVDPDTTYAAARMIA EGLADH Sbjct 61 GLYVCEMVTARALVERHPVTMHMTTFAPDESPRSLQLYTVDPDTTYAAARMIADEGLADH 120 Query 114 IDMNFGCPVPKVTKRGGGAALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHT 173 IDMNFGCPVPKVTKRGGGAALPFKRRLFG+IVAAAVRA EGT IPVTVKFRIGIDDAHHT Sbjct 121 IDMNFGCPVPKVTKRGGGAALPFKRRLFGRIVAAAVRAAEGTGIPVTVKFRIGIDDAHHT 180 Query 174 HLDAGRIAEAEGAAAVALHARTAAQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDA 233 HLDAGRIAEAEGAAAVALHARTAAQRYSGTADW+QI+RLKQ V TIPVLGNGDIYDA DA Sbjct 181 HLDAGRIAEAEGAAAVALHARTAAQRYSGTADWDQISRLKQQVTTIPVLGNGDIYDASDA 240 Query 234 LAMMSTTGCDGVVIGRGCLGRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAH 293 LAMM+TTGCDGVVIGRGCLGRPWLFAELSAAFTG PAPTPPTLGEVAD+IRRHG LLAAH Sbjct 241 LAMMATTGCDGVVIGRGCLGRPWLFAELSAAFTGRPAPTPPTLGEVADVIRRHGALLAAH 300 Query 294 FGEDKGMRDIRKHIAWYLHGFPAGSALRRALAMVKTFDELDCLLDRLDGTVPFPDSATGA 353 FGEDKGMRDIRKHIAWYLHGFPAGS +RRALA+VKT ELD LL+RLDG+VPFP + G Sbjct 301 FGEDKGMRDIRKHIAWYLHGFPAGSDVRRALALVKTLSELDDLLNRLDGSVPFPSAGNGP 360 Query 354 RGRQGSPARVALPDGWLTDPDDCRVPEGADAMGSGG 389 RGRQGSPARVALPDGWL D DDCRVP+GAD M SGG Sbjct 361 RGRQGSPARVALPDGWLDDADDCRVPDGADVMHSGG 396 >gi|333992167|ref|YP_004524781.1| transcriptional regulator [Mycobacterium sp. JDM601] gi|333488135|gb|AEF37527.1| transcriptional regulator [Mycobacterium sp. JDM601] Length=385 Score = 635 bits (1638), Expect = 4e-180, Method: Compositional matrix adjust. Identities = 316/377 (84%), Positives = 340/377 (91%), Gaps = 0/377 (0%) Query 13 LRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHPV 72 LRIG + LASPVVLAPMAGVTNVAFR LCR+LEQS+ GTVSGLYVCEMVTARAL+ERHP Sbjct 9 LRIGSLTLASPVVLAPMAGVTNVAFRTLCRELEQSRAGTVSGLYVCEMVTARALVERHPA 68 Query 73 TMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGGA 132 T+HMTTFSA ESPRSLQLYTVDPDTTYAAA+MIA EGLADHIDMNFGCPVPKVT+ GGG+ Sbjct 69 TLHMTTFSAAESPRSLQLYTVDPDTTYAAAKMIADEGLADHIDMNFGCPVPKVTRHGGGS 128 Query 133 ALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVALH 192 ALP+KRRLFG IVAAAVR T GTDIPVTVKFRIGID+A HTHLDAGRIAEAEGAAAVALH Sbjct 129 ALPYKRRLFGNIVAAAVRGTAGTDIPVTVKFRIGIDEATHTHLDAGRIAEAEGAAAVALH 188 Query 193 ARTAAQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTTGCDGVVIGRGCL 252 ARTAAQRYSG ADWEQIA LK VR+IPVLGNGDI++AGDALAMM+ TGCDGVVIGRGCL Sbjct 189 ARTAAQRYSGKADWEQIAALKAQVRSIPVLGNGDIFEAGDALAMMAATGCDGVVIGRGCL 248 Query 253 GRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAWYLH 312 GRPWLF ELSAAF G P PTPPTLGEVADI+RRHG LLA+HFGEDKGMR+IRKH+AWYLH Sbjct 249 GRPWLFGELSAAFAGRPIPTPPTLGEVADIVRRHGELLASHFGEDKGMREIRKHVAWYLH 308 Query 313 GFPAGSALRRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSPARVALPDGWLTD 372 GFPAGS LRR LAMV T ELD LL +LDG++PFP +ATG RGRQGSPA+V LP+GWL D Sbjct 309 GFPAGSELRRGLAMVATLAELDALLKQLDGSIPFPTAATGPRGRQGSPAKVTLPEGWLAD 368 Query 373 PDDCRVPEGADAMGSGG 389 PDDC VP GAD M SGG Sbjct 369 PDDCTVPSGADIMHSGG 385 >gi|15828169|ref|NP_302432.1| NifR3/Smm1 family transcriptional regulator [Mycobacterium leprae TN] gi|221230646|ref|YP_002504062.1| transcriptional regulator (NifR3/Smm1 family) [Mycobacterium leprae Br4923] gi|2833435|sp|Q50049.1|DUS_MYCLE RecName: Full=Probable tRNA-dihydrouridine synthase gi|699230|gb|AAA62994.1| ntrB [Mycobacterium leprae] gi|13093723|emb|CAC31141.1| transcriptional regulator (NifR3/Smm1 family) [Mycobacterium leprae] gi|219933753|emb|CAR72283.1| transcriptional regulator (NifR3/Smm1 family) [Mycobacterium leprae Br4923] Length=384 Score = 622 bits (1603), Expect = 4e-176, Method: Compositional matrix adjust. Identities = 316/384 (83%), Positives = 336/384 (88%), Gaps = 19/384 (4%) Query 25 VLAPMAGVTNVAFRALCRQ-------------------LEQSKVGTVSGLYVCEMVTARA 65 +LAPMAGVTNV FR LCR+ LEQS+VGT+SGLYVCEMVTARA Sbjct 1 MLAPMAGVTNVTFRTLCREFGSTRGNLLRPAPPHLRSPLEQSQVGTISGLYVCEMVTARA 60 Query 66 LIERHPVTMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKV 125 L+ER+ VT+HMTTF+ DESPRSLQLYTVDP TTY AA+M+A EGLADHIDMNFGCP+PKV Sbjct 61 LVERNAVTIHMTTFAPDESPRSLQLYTVDPATTYTAAKMVADEGLADHIDMNFGCPMPKV 120 Query 126 TKRGGGAALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEG 185 T+RGGGAALP+KRRLFGQIVAAAVRATEGT IPVTVKFRIGIDD HHTHLDAGRIAEAEG Sbjct 121 TRRGGGAALPYKRRLFGQIVAAAVRATEGTKIPVTVKFRIGIDDEHHTHLDAGRIAEAEG 180 Query 186 AAAVALHARTAAQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTTGCDGV 245 AAAVALHARTAAQRYSGTADW QIA+LKQ VRTIPVLGNGDIYDA DALAMM+ TGCDGV Sbjct 181 AAAVALHARTAAQRYSGTADWAQIAQLKQQVRTIPVLGNGDIYDASDALAMMAVTGCDGV 240 Query 246 VIGRGCLGRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRK 305 VIGRGCLGRPWLFAELSAAFTG PAP PPTLGEVA+I+RRHG LL AHFGEDKGMRDIRK Sbjct 241 VIGRGCLGRPWLFAELSAAFTGRPAPAPPTLGEVAEIVRRHGKLLVAHFGEDKGMRDIRK 300 Query 306 HIAWYLHGFPAGSALRRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSPARVAL 365 HIAWYLHGFPAGS LR ALA+VKT DELDCLL+RLDG VPFPD+A G RGRQGSPA VAL Sbjct 301 HIAWYLHGFPAGSELRNALALVKTLDELDCLLNRLDGAVPFPDAAIGPRGRQGSPAWVAL 360 Query 366 PDGWLTDPDDCRVPEGADAMGSGG 389 PD WLTDPDDC VP GAD M SGG Sbjct 361 PDSWLTDPDDCTVPIGADIMESGG 384 >gi|145222259|ref|YP_001132937.1| nifR3 family TIM-barrel protein [Mycobacterium gilvum PYR-GCK] gi|145214745|gb|ABP44149.1| putative TIM-barrel protein, nifR3 family [Mycobacterium gilvum PYR-GCK] Length=455 Score = 621 bits (1601), Expect = 7e-176, Method: Compositional matrix adjust. Identities = 309/378 (82%), Positives = 336/378 (89%), Gaps = 0/378 (0%) Query 12 ALRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHP 71 +LRIGP +L SPVVLAPMAGVTNVAFR LCR+LE S+ GTVSGLYVCEMVTARAL+ERHP Sbjct 78 SLRIGPFDLRSPVVLAPMAGVTNVAFRTLCRELELSRAGTVSGLYVCEMVTARALVERHP 137 Query 72 VTMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGG 131 VTMHMTTF+ +ESPRSLQLYTVDP TYAAA+MI E LADHIDMNFGCPVPKVT+RGGG Sbjct 138 VTMHMTTFAPEESPRSLQLYTVDPVNTYAAAKMIVDENLADHIDMNFGCPVPKVTRRGGG 197 Query 132 AALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVAL 191 AALP+KRRLFGQIV+AAVRATEGTDIPVTVKFRIGIDD HHTHLDAGRIA EGAAAVAL Sbjct 198 AALPYKRRLFGQIVSAAVRATEGTDIPVTVKFRIGIDDEHHTHLDAGRIAAEEGAAAVAL 257 Query 192 HARTAAQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTTGCDGVVIGRGC 251 HARTAAQRYSG+ADW+QIA LK HV +PVLGNGDI+DA DALAMM+ TGCDGVVIGRGC Sbjct 258 HARTAAQRYSGSADWDQIAALKAHVTNVPVLGNGDIFDARDALAMMAATGCDGVVIGRGC 317 Query 252 LGRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAWYL 311 LGRPWLFAELSAAFTG+ TPPTLGEVA IIRRHG LLAAHFGEDKGMRDIRKH+AWY+ Sbjct 318 LGRPWLFAELSAAFTGATPATPPTLGEVAQIIRRHGELLAAHFGEDKGMRDIRKHVAWYM 377 Query 312 HGFPAGSALRRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSPARVALPDGWLT 371 HGFPAG+ LRR++A+VKT ELD LL++LD VPFP +A G RGRQGS A V LP+GWL Sbjct 378 HGFPAGADLRRSMALVKTISELDDLLEQLDPDVPFPAAANGPRGRQGSAASVTLPEGWLD 437 Query 372 DPDDCRVPEGADAMGSGG 389 DPDDC VP GAD M SGG Sbjct 438 DPDDCTVPAGADVMHSGG 455 >gi|169627854|ref|YP_001701503.1| tRNA-dihydrouridine synthase [Mycobacterium abscessus ATCC 19977] gi|169239821|emb|CAM60849.1| Probable tRNA-dihydrouridine synthase [Mycobacterium abscessus] Length=391 Score = 614 bits (1583), Expect = 9e-174, Method: Compositional matrix adjust. Identities = 295/380 (78%), Positives = 323/380 (85%), Gaps = 0/380 (0%) Query 10 SPALRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIER 69 S LRIG + L SPVVLAPMAGVTNVAFR LCR+LE + GTVSGLYVCEMVTARAL ER Sbjct 12 SRELRIGSLALPSPVVLAPMAGVTNVAFRTLCRELELATTGTVSGLYVCEMVTARALAER 71 Query 70 HPVTMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRG 129 HPVT+HMTTFS +ESPRSLQLY+VDP+TTY AA+M+ EGLADHIDMNFGCPVPKVT+ G Sbjct 72 HPVTLHMTTFSPEESPRSLQLYSVDPETTYRAAKMVVDEGLADHIDMNFGCPVPKVTRNG 131 Query 130 GGAALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAV 189 GGAALP+KRRLFGQIVAAAVRAT GTDIPVTVKFR+GIDD HHTHLDAG IAE+EGAAAV Sbjct 132 GGAALPYKRRLFGQIVAAAVRATAGTDIPVTVKFRVGIDDDHHTHLDAGAIAESEGAAAV 191 Query 190 ALHARTAAQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTTGCDGVVIGR 249 ALHARTA+QRYSGTADW QIA LK HV TIPVLGNGDI+DA DA+AMM TGCDGVVIGR Sbjct 192 ALHARTASQRYSGTADWSQIAALKNHVTTIPVLGNGDIFDAADAVAMMEQTGCDGVVIGR 251 Query 250 GCLGRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAW 309 GCLGRPWLFAELSA F G P PP LG+V I+RRH LL HFGEDK +RD+RKHIAW Sbjct 252 GCLGRPWLFAELSAVFNGQTIPAPPNLGQVTVIMRRHAELLVDHFGEDKALRDMRKHIAW 311 Query 310 YLHGFPAGSALRRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSPARVALPDGW 369 YLHGFPAG +RRALA+V T ELD LL++LD + PFP+ G RGRQGSPA+V+LPDGW Sbjct 312 YLHGFPAGGDIRRALALVSTRAELDTLLEQLDQSAPFPEGGNGPRGRQGSPAKVSLPDGW 371 Query 370 LTDPDDCRVPEGADAMGSGG 389 L DPDDC VP AD M SGG Sbjct 372 LNDPDDCTVPSAADVMHSGG 391 >gi|120406034|ref|YP_955863.1| nifR3 family TIM-barrel protein [Mycobacterium vanbaalenii PYR-1] gi|119958852|gb|ABM15857.1| putative TIM-barrel protein, nifR3 family [Mycobacterium vanbaalenii PYR-1] Length=377 Score = 605 bits (1561), Expect = 3e-171, Method: Compositional matrix adjust. Identities = 311/377 (83%), Positives = 333/377 (89%), Gaps = 0/377 (0%) Query 13 LRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHPV 72 +RIGPI L SPVVLAPMAGVTNVAFR LCR+LE S+ GTVSGLYVCEMVTARAL+ERHPV Sbjct 1 MRIGPIALHSPVVLAPMAGVTNVAFRTLCRELELSRAGTVSGLYVCEMVTARALVERHPV 60 Query 73 TMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGGA 132 TMHMTTF+ +ESPRSLQLYTVDP TYAAA+MI E LADHIDMNFGCPVPKVT+RGGGA Sbjct 61 TMHMTTFAPEESPRSLQLYTVDPANTYAAAKMIVDENLADHIDMNFGCPVPKVTRRGGGA 120 Query 133 ALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVALH 192 ALP+KRRLFGQI+ AAV ATEGTDIPVTVKFRIGIDDAHHTHLDAGRIA EGAAAVALH Sbjct 121 ALPYKRRLFGQIIRAAVAATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAADEGAAAVALH 180 Query 193 ARTAAQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTTGCDGVVIGRGCL 252 ARTAAQRYSG+ADWEQIA LK HV IPVLGNGDI+DA DALAMM+ TGCDGVVIGRGCL Sbjct 181 ARTAAQRYSGSADWEQIAALKAHVTNIPVLGNGDIFDARDALAMMAATGCDGVVIGRGCL 240 Query 253 GRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAWYLH 312 GRPWLFAELSAAF G+ TPPTLGEVA IIRRHG LLAAHFGEDKGMRDIRKH+AWY+H Sbjct 241 GRPWLFAELSAAFNGTAPATPPTLGEVAQIIRRHGELLAAHFGEDKGMRDIRKHVAWYMH 300 Query 313 GFPAGSALRRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSPARVALPDGWLTD 372 GFPAG+ LRR+LA+VKT ELD LLD+LD VPFP +A G RGRQGS A V LP+GWL D Sbjct 301 GFPAGADLRRSLALVKTISELDDLLDQLDPDVPFPAAANGPRGRQGSAASVTLPEGWLDD 360 Query 373 PDDCRVPEGADAMGSGG 389 PDDC VP GAD M SGG Sbjct 361 PDDCTVPAGADVMHSGG 377 >gi|118473981|ref|YP_890003.1| tRNA-dihydrouridine synthase [Mycobacterium smegmatis str. MC2 155] gi|118175268|gb|ABK76164.1| tRNA-dihydrouridine synthase, putative [Mycobacterium smegmatis str. MC2 155] Length=389 Score = 604 bits (1557), Expect = 8e-171, Method: Compositional matrix adjust. Identities = 312/378 (83%), Positives = 334/378 (89%), Gaps = 0/378 (0%) Query 12 ALRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHP 71 AL+IG I L SPVVLAPMAGVTNVAFR LCR+LE ++ GTVSGLYVCEMVTARAL+ERHP Sbjct 12 ALQIGSIALHSPVVLAPMAGVTNVAFRTLCRELEIARAGTVSGLYVCEMVTARALVERHP 71 Query 72 VTMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGG 131 VTMHMTTF+ +ESPRSLQLYTVDP+ TY AA+MI E LADHIDMNFGCPVPKVTKRGGG Sbjct 72 VTMHMTTFAPEESPRSLQLYTVDPENTYKAAKMIVDEDLADHIDMNFGCPVPKVTKRGGG 131 Query 132 AALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVAL 191 AALP+KRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDD HHTHLDAGRIA EGAAAVAL Sbjct 132 AALPYKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDEHHTHLDAGRIAAEEGAAAVAL 191 Query 192 HARTAAQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTTGCDGVVIGRGC 251 HARTAAQRYSGTADWEQIA LK HV IPVLGNGDI++A DALAMM+ TGCDGVVIGRGC Sbjct 192 HARTAAQRYSGTADWEQIAALKAHVTGIPVLGNGDIFEADDALAMMAATGCDGVVIGRGC 251 Query 252 LGRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAWYL 311 LGRPWLFAELSAAF P PTPPTLGEVADI+RRHG LL+ HFGEDKGMRDIRKH+AWYL Sbjct 252 LGRPWLFAELSAAFNNRPIPTPPTLGEVADIVRRHGELLSRHFGEDKGMRDIRKHVAWYL 311 Query 312 HGFPAGSALRRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSPARVALPDGWLT 371 HGFPAG+ LRRALA+VKT ELD LLD+LD PFP +ATG RGRQGS + V LP+GWL Sbjct 312 HGFPAGADLRRALALVKTRRELDELLDQLDRDAPFPPAATGPRGRQGSASSVHLPEGWLD 371 Query 372 DPDDCRVPEGADAMGSGG 389 DPDDC VP GAD M SGG Sbjct 372 DPDDCAVPVGADVMHSGG 389 >gi|108801475|ref|YP_641672.1| dihydrouridine synthase TIM-barrel protein nifR3 [Mycobacterium sp. MCS] gi|119870628|ref|YP_940580.1| nifR3 family TIM-barrel protein [Mycobacterium sp. KMS] gi|108771894|gb|ABG10616.1| Dihydrouridine synthase TIM-barrel protein nifR3 [Mycobacterium sp. MCS] gi|119696717|gb|ABL93790.1| putative TIM-barrel protein, nifR3 family [Mycobacterium sp. KMS] Length=370 Score = 594 bits (1532), Expect = 8e-168, Method: Compositional matrix adjust. Identities = 309/370 (84%), Positives = 328/370 (89%), Gaps = 0/370 (0%) Query 20 LASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHPVTMHMTTF 79 + SPVVLAPMAGVTNVAFR LCR+LE ++ GTVSGLYVCEMVTARAL+ERHPVTMHMT F Sbjct 1 MPSPVVLAPMAGVTNVAFRTLCRELEVARAGTVSGLYVCEMVTARALVERHPVTMHMTAF 60 Query 80 SADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGGAALPFKRR 139 ++DESPRSLQLYTVDP TTYAAA+MIA E +ADHIDMNFGCPVPKVTKRGGGAALP+KR+ Sbjct 61 ASDESPRSLQLYTVDPATTYAAAKMIADENMADHIDMNFGCPVPKVTKRGGGAALPYKRK 120 Query 140 LFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVALHARTAAQR 199 LFGQIV AAV ATEGTDIPVTVKFRIGIDDAHHTHLDAGRIA EGAAAVALHARTAAQR Sbjct 121 LFGQIVRAAVTATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAAEEGAAAVALHARTAAQR 180 Query 200 YSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTTGCDGVVIGRGCLGRPWLFA 259 YSGTADW+QIA LK HV +PVLGNGDI+DA DALAMM+ TGCDGVVIGRGCLGRPWLFA Sbjct 181 YSGTADWDQIAALKAHVTAVPVLGNGDIFDADDALAMMAATGCDGVVIGRGCLGRPWLFA 240 Query 260 ELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAWYLHGFPAGSA 319 ELSA FTG P P PPTLGEVADIIRRHG LL HFGEDK MRDIRKHIAWYLHGFPAGS Sbjct 241 ELSAKFTGRPLPVPPTLGEVADIIRRHGELLTDHFGEDKAMRDIRKHIAWYLHGFPAGSD 300 Query 320 LRRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSPARVALPDGWLTDPDDCRVP 379 LRRALA+VKT EL LL RLD VPFP +ATG RGRQGS A V+LP+GWLTDPDDC VP Sbjct 301 LRRALALVKTRAELSELLARLDPDVPFPPAATGPRGRQGSAASVSLPEGWLTDPDDCTVP 360 Query 380 EGADAMGSGG 389 GAD M SGG Sbjct 361 AGADVMHSGG 370 >gi|315442689|ref|YP_004075568.1| hypothetical protein Mspyr1_10440 [Mycobacterium sp. Spyr1] gi|315260992|gb|ADT97733.1| putative TIM-barrel protein, nifR3 family [Mycobacterium sp. Spyr1] Length=361 Score = 594 bits (1532), Expect = 8e-168, Method: Compositional matrix adjust. Identities = 296/361 (82%), Positives = 321/361 (89%), Gaps = 0/361 (0%) Query 29 MAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHPVTMHMTTFSADESPRSL 88 MAGVTNVAFR LCR+LE S+ GTVSGLYVCEMVTARAL+ERHPVTMHMTTF+ +ESPRSL Sbjct 1 MAGVTNVAFRTLCRELELSRAGTVSGLYVCEMVTARALVERHPVTMHMTTFAPEESPRSL 60 Query 89 QLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGGAALPFKRRLFGQIVAAA 148 QLYTVDP TYAAA+MI E LADHIDMNFGCPVPKVT+RGGGAALP+KRRLFGQIV+AA Sbjct 61 QLYTVDPVNTYAAAKMIVDEDLADHIDMNFGCPVPKVTRRGGGAALPYKRRLFGQIVSAA 120 Query 149 VRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVALHARTAAQRYSGTADWEQ 208 VRATEGTDIPVTVKFRIGIDD HHTHLDAGRIA EGAAAVALHARTAAQRYSG+ADW+Q Sbjct 121 VRATEGTDIPVTVKFRIGIDDEHHTHLDAGRIAAEEGAAAVALHARTAAQRYSGSADWDQ 180 Query 209 IARLKQHVRTIPVLGNGDIYDAGDALAMMSTTGCDGVVIGRGCLGRPWLFAELSAAFTGS 268 IA LK HV +PVLGNGDI+DA DALAMM+ TGCDGVVIGRGCLGRPWLFAELSAAFTG+ Sbjct 181 IAALKAHVTNVPVLGNGDIFDARDALAMMAATGCDGVVIGRGCLGRPWLFAELSAAFTGA 240 Query 269 PAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAWYLHGFPAGSALRRALAMVK 328 TPPTLGEVA IIRRHG LLAAHFGEDKGMRDIRKH+AWY+HGFPAG+ LRR++A+VK Sbjct 241 TPATPPTLGEVAQIIRRHGELLAAHFGEDKGMRDIRKHVAWYMHGFPAGADLRRSMALVK 300 Query 329 TFDELDCLLDRLDGTVPFPDSATGARGRQGSPARVALPDGWLTDPDDCRVPEGADAMGSG 388 T ELD LL++LD VPFP +A G RGRQGS A V LP+GWL DPDDC VP GAD M SG Sbjct 301 TISELDDLLEQLDPDVPFPAAANGPRGRQGSAASVTLPEGWLDDPDDCTVPAGADMMHSG 360 Query 389 G 389 G Sbjct 361 G 361 >gi|126437460|ref|YP_001073151.1| nifR3 family TIM-barrel protein [Mycobacterium sp. JLS] gi|126237260|gb|ABO00661.1| putative TIM-barrel protein, nifR3 family [Mycobacterium sp. JLS] Length=370 Score = 592 bits (1525), Expect = 4e-167, Method: Compositional matrix adjust. Identities = 308/370 (84%), Positives = 327/370 (89%), Gaps = 0/370 (0%) Query 20 LASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHPVTMHMTTF 79 + SPVVLAPMAGVTNVAFR LCR+LE ++ GTVSGLYVCEMVTARAL+ERHPVTMHMT F Sbjct 1 MPSPVVLAPMAGVTNVAFRTLCRELEVARAGTVSGLYVCEMVTARALVERHPVTMHMTAF 60 Query 80 SADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGGAALPFKRR 139 ++DESPRSLQLYTVDP TTYAAA+MIA E +ADHIDMNFGCPVPKVTKRGGGAALP+KR+ Sbjct 61 ASDESPRSLQLYTVDPATTYAAAKMIADENMADHIDMNFGCPVPKVTKRGGGAALPYKRK 120 Query 140 LFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVALHARTAAQR 199 LFGQIV AAV ATEGTDIPVTVKFRIGIDDAHHTHLDAGRIA EGAAAVALHARTAAQR Sbjct 121 LFGQIVRAAVTATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAAEEGAAAVALHARTAAQR 180 Query 200 YSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTTGCDGVVIGRGCLGRPWLFA 259 YSGTADW+QIA LK HV +PVLGNGDI+DA DALAMM+ TGCDGVVIGRGCLGRPWLFA Sbjct 181 YSGTADWDQIAALKAHVTAVPVLGNGDIFDADDALAMMAATGCDGVVIGRGCLGRPWLFA 240 Query 260 ELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAWYLHGFPAGSA 319 ELSA FTG P P PPTLGEVADIIRRHG LL HFGEDK MRDIRKHIAWYLHGFPAGS Sbjct 241 ELSAKFTGRPLPVPPTLGEVADIIRRHGELLTDHFGEDKAMRDIRKHIAWYLHGFPAGSD 300 Query 320 LRRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSPARVALPDGWLTDPDDCRVP 379 LRRALA+VKT EL LL RLD VPFP +ATG RGRQGS A V+LP+GWLTDPDDC VP Sbjct 301 LRRALALVKTRAELSELLARLDPDVPFPPAATGPRGRQGSAASVSLPEGWLTDPDDCTVP 360 Query 380 EGADAMGSGG 389 GA M SGG Sbjct 361 AGAHVMHSGG 370 >gi|262203780|ref|YP_003274988.1| hypothetical protein Gbro_3919 [Gordonia bronchialis DSM 43247] gi|262087127|gb|ACY23095.1| TIM-barrel protein, nifR3 family [Gordonia bronchialis DSM 43247] Length=394 Score = 585 bits (1508), Expect = 4e-165, Method: Compositional matrix adjust. Identities = 287/378 (76%), Positives = 320/378 (85%), Gaps = 0/378 (0%) Query 12 ALRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHP 71 ALRIG IELASPVVLAPMAGVTNVAFR LCR+LE ++ GTVSGLYVCEMVTARAL+ERHP Sbjct 17 ALRIGSIELASPVVLAPMAGVTNVAFRTLCRELEIARTGTVSGLYVCEMVTARALVERHP 76 Query 72 VTMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGG 131 VTMHMTTF+ +ESPRS+QLYTVDP+ TYAAA+MI E LADHIDMNFGCPVPKVT++GGG Sbjct 77 VTMHMTTFAPEESPRSMQLYTVDPEYTYAAAKMIVDEDLADHIDMNFGCPVPKVTRKGGG 136 Query 132 AALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVAL 191 +A+P+KR LF +IVAAAVRATEGTDIPVTVKFRIGIDD H THLDAGRIA EGA AVAL Sbjct 137 SAIPYKRTLFRKIVAAAVRATEGTDIPVTVKFRIGIDDEHRTHLDAGRIAAEEGAKAVAL 196 Query 192 HARTAAQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTTGCDGVVIGRGC 251 HARTA+QRYSG ADW++IARLK HV +PVLGNGDI++ DA+ MM TGCDGVVIGRGC Sbjct 197 HARTASQRYSGQADWDEIARLKDHVTDVPVLGNGDIFEPVDAVEMMRRTGCDGVVIGRGC 256 Query 252 LGRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAWYL 311 LGRPWLFAEL+A G APTPPTLGEVADII RH LL AH GE KG R+IRKH+AWYL Sbjct 257 LGRPWLFAELAAEMNGVEAPTPPTLGEVADIIVRHCELLVAHHGEMKGCREIRKHVAWYL 316 Query 312 HGFPAGSALRRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSPARVALPDGWLT 371 GFPAGS LRR +A+V+T D+L L+ L VPFP G RGRQGSPA+VALPDGWL Sbjct 317 RGFPAGSELRRQMALVETVDQLRELVATLPADVPFPTDGHGPRGRQGSPAKVALPDGWLD 376 Query 372 DPDDCRVPEGADAMGSGG 389 DPD+ VPEGA+ M SGG Sbjct 377 DPDEDVVPEGAEIMHSGG 394 >gi|333918428|ref|YP_004492009.1| putative tRNA-dihydrouridine synthase [Amycolicicoccus subflavus DQS3-9A1] gi|333480649|gb|AEF39209.1| Putative tRNA-dihydrouridine synthase [Amycolicicoccus subflavus DQS3-9A1] Length=392 Score = 575 bits (1481), Expect = 6e-162, Method: Compositional matrix adjust. Identities = 285/377 (76%), Positives = 315/377 (84%), Gaps = 0/377 (0%) Query 13 LRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHPV 72 LRIGP+EL SPVVLAPMAG+TNVAFR LCR++E +K+G+ +GLYVCEMVTARAL+ER+ Sbjct 16 LRIGPLELGSPVVLAPMAGITNVAFRTLCREIETAKMGSTAGLYVCEMVTARALVERNAA 75 Query 73 TMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGGA 132 TMHMTTF E+PRSLQLYTVDP TY AARMIA E LADHIDMNFGCPVPKVT++GGGA Sbjct 76 TMHMTTFGPTETPRSLQLYTVDPKYTYEAARMIAEENLADHIDMNFGCPVPKVTRKGGGA 135 Query 133 ALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVALH 192 ALP+KR LFGQIVAAAVRAT GT+IPVTVKFRIGID+ HHTHLDAG IA +EGAAAVALH Sbjct 136 ALPYKRNLFGQIVAAAVRATSGTEIPVTVKFRIGIDENHHTHLDAGHIAASEGAAAVALH 195 Query 193 ARTAAQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTTGCDGVVIGRGCL 252 ARTAAQRYSGTADW +IARLK HV +PVLGNGDI+ A DA+ MM+ T CDGVV+GRGCL Sbjct 196 ARTAAQRYSGTADWGEIARLKDHVTDVPVLGNGDIFSAADAVRMMAETRCDGVVVGRGCL 255 Query 253 GRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAWYLH 312 GRPWLFAELSAA P P PP LGEVA I+ RH LL H GE KG+R+IRKHIAWYL Sbjct 256 GRPWLFAELSAALNDQPLPGPPNLGEVAKIMHRHAQLLVDHHGEGKGLREIRKHIAWYLR 315 Query 313 GFPAGSALRRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSPARVALPDGWLTD 372 GFPAGS LR ALA+V T +EL LL +LD T PFP +A G RGRQGSPARV LP GWL D Sbjct 316 GFPAGSELRSALALVTTLEELKSLLSQLDATAPFPAAAEGPRGRQGSPARVVLPHGWLDD 375 Query 373 PDDCRVPEGADAMGSGG 389 P DC VPEGADAM SGG Sbjct 376 PLDCSVPEGADAMHSGG 392 >gi|111021839|ref|YP_704811.1| tRNA-dihydrouridine synthase [Rhodococcus jostii RHA1] gi|110821369|gb|ABG96653.1| probable tRNA-dihydrouridine synthase [Rhodococcus jostii RHA1] Length=380 Score = 573 bits (1477), Expect = 2e-161, Method: Compositional matrix adjust. Identities = 285/378 (76%), Positives = 319/378 (85%), Gaps = 0/378 (0%) Query 12 ALRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHP 71 +LRIG +EL SPVVLAPMAG+TNVAFR LCR+LE + G+ SGLYVCEMVTARAL+ER P Sbjct 3 SLRIGSLELRSPVVLAPMAGITNVAFRTLCRELETERAGSTSGLYVCEMVTARALVERQP 62 Query 72 VTMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGG 131 T+HMTTF E+PRSLQLYTVDPDTTYAAA+MI E +ADHIDMNFGCPVPKVT++GGG Sbjct 63 ATLHMTTFGPTETPRSLQLYTVDPDTTYAAAKMIVDENMADHIDMNFGCPVPKVTRKGGG 122 Query 132 AALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVAL 191 AALP+KR LFG+IVAAAV+ATEGTD+PVTVKFR+GID HHTHLDAGRIA EGAAAVAL Sbjct 123 AALPYKRTLFGRIVAAAVKATEGTDVPVTVKFRVGIDAEHHTHLDAGRIAAGEGAAAVAL 182 Query 192 HARTAAQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTTGCDGVVIGRGC 251 HARTA+QRYSGTADW +IARLK+HV +PVLGNGDI+ A DA MM TGCDGVV+GRGC Sbjct 183 HARTASQRYSGTADWNEIARLKEHVTDVPVLGNGDIFAAEDAARMMEQTGCDGVVVGRGC 242 Query 252 LGRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAWYL 311 LGRPWLFAELSAA G P PTPP LGEVA IIRRH LLA H GEDKG+R++RKH++WYL Sbjct 243 LGRPWLFAELSAALNGKPQPTPPNLGEVATIIRRHAELLADHHGEDKGLRELRKHVSWYL 302 Query 312 HGFPAGSALRRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSPARVALPDGWLT 371 GFPAGS LR A+A+V T ELD LL +LD T+PFP A G RGRQGSP VALP+GWL Sbjct 303 RGFPAGSELRVAMALVSTLTELDDLLVQLDPTIPFPKDAEGPRGRQGSPGTVALPEGWLD 362 Query 372 DPDDCRVPEGADAMGSGG 389 DPDDC VP GAD M SGG Sbjct 363 DPDDCLVPAGADLMHSGG 380 >gi|326384894|ref|ZP_08206569.1| TIM-barrel protein, nifR3 family [Gordonia neofelifaecis NRRL B-59395] gi|326196413|gb|EGD53612.1| TIM-barrel protein, nifR3 family [Gordonia neofelifaecis NRRL B-59395] Length=390 Score = 572 bits (1475), Expect = 3e-161, Method: Compositional matrix adjust. Identities = 285/377 (76%), Positives = 321/377 (86%), Gaps = 0/377 (0%) Query 13 LRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHPV 72 LRIG IEL SPVVLAPMAGVTNVAFR LCR+LE ++ GTVSGLYVCEMVTARAL+ERHPV Sbjct 14 LRIGSIELNSPVVLAPMAGVTNVAFRVLCRELELARTGTVSGLYVCEMVTARALVERHPV 73 Query 73 TMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGGA 132 TMHMT F E+PRS+QLYTVDP+ TY AA+MI E LADHIDMNFGCPVPKVT++GGG+ Sbjct 74 TMHMTAFDPSETPRSMQLYTVDPEYTYQAAKMIVDENLADHIDMNFGCPVPKVTRKGGGS 133 Query 133 ALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVALH 192 A+P+KRRLF IVAAAVRATEGTDIPVTVKFRIGIDD HHTHLDAGRIA AEGA AVALH Sbjct 134 AIPYKRRLFRNIVAAAVRATEGTDIPVTVKFRIGIDDDHHTHLDAGRIAAAEGAQAVALH 193 Query 193 ARTAAQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTTGCDGVVIGRGCL 252 ARTA+QRYSGTA W++IARLK+HV +PVLGNGDI++A DA+ MM+ TGCDGVVIGRGCL Sbjct 194 ARTASQRYSGTAAWDEIARLKEHVTDVPVLGNGDIFEAEDAVRMMAQTGCDGVVIGRGCL 253 Query 253 GRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAWYLH 312 GRPWLFAELSA G APTPP LGEVA+I+ RHG LLAAH GE KGMR+IRKH+AWYL Sbjct 254 GRPWLFAELSARLRGVEAPTPPNLGEVAEIMIRHGELLAAHHGEGKGMREIRKHVAWYLR 313 Query 313 GFPAGSALRRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSPARVALPDGWLTD 372 GFPAGS LR +L++VKT D+L L+ L VPFP+ G RGRQGSPA VALP+GWL D Sbjct 314 GFPAGSDLRSSLSLVKTLDDLRELVATLPADVPFPEDGHGPRGRQGSPASVALPEGWLDD 373 Query 373 PDDCRVPEGADAMGSGG 389 P++ VPEGA+ M SGG Sbjct 374 PEEDIVPEGAEIMHSGG 390 >gi|226364360|ref|YP_002782142.1| tRNA-dihydrouridine synthase [Rhodococcus opacus B4] gi|226242849|dbj|BAH53197.1| putative tRNA-dihydrouridine synthase [Rhodococcus opacus B4] Length=380 Score = 571 bits (1472), Expect = 7e-161, Method: Compositional matrix adjust. Identities = 284/378 (76%), Positives = 319/378 (85%), Gaps = 0/378 (0%) Query 12 ALRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHP 71 +LRIG +EL SPVVLAPMAG+TNVAFR LCR+LE + G+ SGLYVCEMVTARAL+ER P Sbjct 3 SLRIGSLELRSPVVLAPMAGITNVAFRTLCRELETERAGSTSGLYVCEMVTARALVERQP 62 Query 72 VTMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGG 131 T+HMTTF E+PRSLQLYTVDPDTTYAAA+MI E +ADHIDMNFGCPVPKVT++GGG Sbjct 63 ATLHMTTFGPTETPRSLQLYTVDPDTTYAAAKMIVDENMADHIDMNFGCPVPKVTRKGGG 122 Query 132 AALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVAL 191 AALP+KR LFG+IVAAAV+ATEGTD+PVTVKFR+GID HHTHLDAGRIA EGAAAVAL Sbjct 123 AALPYKRTLFGRIVAAAVKATEGTDVPVTVKFRVGIDADHHTHLDAGRIAAGEGAAAVAL 182 Query 192 HARTAAQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTTGCDGVVIGRGC 251 HARTA+QRYSGTADW +IARLK+HV +PVLGNGDI+ A DA MM TGCDGVV+GRGC Sbjct 183 HARTASQRYSGTADWNEIARLKEHVTDVPVLGNGDIFAAEDAARMMEQTGCDGVVVGRGC 242 Query 252 LGRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAWYL 311 LGRPWLFAELSAA G P PTPP LGEVA IIRRH LLA H GEDKG+R++RKH++WYL Sbjct 243 LGRPWLFAELSAALNGKPQPTPPNLGEVATIIRRHAELLADHHGEDKGLRELRKHVSWYL 302 Query 312 HGFPAGSALRRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSPARVALPDGWLT 371 GFPAGS LR A+A+V T ELD LL +LD T+PFP A G RGRQGSP VALP+GWL Sbjct 303 RGFPAGSELRVAMALVSTLTELDDLLVQLDPTIPFPKDAEGPRGRQGSPGTVALPEGWLD 362 Query 372 DPDDCRVPEGADAMGSGG 389 DP+DC VP GAD M SGG Sbjct 363 DPEDCLVPAGADLMHSGG 380 >gi|312138334|ref|YP_004005670.1| tRNA-dihydrouridine synthase [Rhodococcus equi 103S] gi|325674749|ref|ZP_08154436.1| dihydrouridine synthase [Rhodococcus equi ATCC 33707] gi|311887673|emb|CBH46985.1| tRNA-dihydrouridine synthase [Rhodococcus equi 103S] gi|325554335|gb|EGD24010.1| dihydrouridine synthase [Rhodococcus equi ATCC 33707] Length=380 Score = 561 bits (1447), Expect = 5e-158, Method: Compositional matrix adjust. Identities = 283/377 (76%), Positives = 313/377 (84%), Gaps = 0/377 (0%) Query 13 LRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHPV 72 LRIG +EL SPVVLAPMAG+TNVAFR LCR+LE + G+ SGLYVCEMVTARAL+ERHPV Sbjct 4 LRIGSLELGSPVVLAPMAGITNVAFRTLCRELELERAGSTSGLYVCEMVTARALVERHPV 63 Query 73 TMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGGA 132 TMHMTTF E+PRSLQLYTVDP+ TY AA+MI E LADHIDMNFGCPVPKVT++GGG+ Sbjct 64 TMHMTTFGPTETPRSLQLYTVDPEITYQAAKMIVDENLADHIDMNFGCPVPKVTRKGGGS 123 Query 133 ALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVALH 192 ALP+KRRLFGQIVAAAV+ATEGTDIPVTVK R+GID HHTHLDAGRIA AEGAAAVALH Sbjct 124 ALPYKRRLFGQIVAAAVKATEGTDIPVTVKMRVGIDAEHHTHLDAGRIAAAEGAAAVALH 183 Query 193 ARTAAQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTTGCDGVVIGRGCL 252 RTAAQRYSG ADW +IARLK+HV +PVLGNGDI+ A DA MMS TGCDGVV+GRGCL Sbjct 184 GRTAAQRYSGQADWSEIARLKEHVTDVPVLGNGDIFAAEDAEKMMSETGCDGVVVGRGCL 243 Query 253 GRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAWYLH 312 GRPWLFAELSAA G+ P PP LGEVA I+ RHG LLA H GEDKGMR++RKHIAWY+ Sbjct 244 GRPWLFAELSAALNGTEMPVPPNLGEVAAIMMRHGRLLADHHGEDKGMREMRKHIAWYMR 303 Query 313 GFPAGSALRRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSPARVALPDGWLTD 372 GFPAGS LR +A V + EL+ L +LD TVPFP A G RGRQGSP VALPDGWL D Sbjct 304 GFPAGSELRNGMARVSSLAELEGFLGQLDPTVPFPKDAEGPRGRQGSPGTVALPDGWLDD 363 Query 373 PDDCRVPEGADAMGSGG 389 P+D VP GAD M SGG Sbjct 364 PEDTLVPAGADVMHSGG 380 >gi|226308278|ref|YP_002768238.1| tRNA-dihydrouridine synthase [Rhodococcus erythropolis PR4] gi|229488396|ref|ZP_04382262.1| putative tRNA-dihydrouridine synthase [Rhodococcus erythropolis SK121] gi|226187395|dbj|BAH35499.1| putative tRNA-dihydrouridine synthase [Rhodococcus erythropolis PR4] gi|229323900|gb|EEN89655.1| putative tRNA-dihydrouridine synthase [Rhodococcus erythropolis SK121] Length=380 Score = 560 bits (1443), Expect = 1e-157, Method: Compositional matrix adjust. Identities = 281/378 (75%), Positives = 316/378 (84%), Gaps = 0/378 (0%) Query 12 ALRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHP 71 +LRIG +EL SPVVLAPMAGVTNVAFR LCR+LE + G+ SGLYVCEMVTARAL+ER P Sbjct 3 SLRIGSLELHSPVVLAPMAGVTNVAFRTLCRELELERAGSTSGLYVCEMVTARALVERQP 62 Query 72 VTMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGG 131 TMHMTTF E+PRSLQLYTVDPDTTYAAA+MI E +ADHIDMNFGCPVPKVT++GGG Sbjct 63 ATMHMTTFGPTETPRSLQLYTVDPDTTYAAAKMIVDENMADHIDMNFGCPVPKVTRKGGG 122 Query 132 AALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVAL 191 +ALP+KRRLFGQIVAAAVRATEGTDIPVTVK R+GID HHTHLDAGRIA AEGAAAVAL Sbjct 123 SALPYKRRLFGQIVAAAVRATEGTDIPVTVKMRVGIDPEHHTHLDAGRIAAAEGAAAVAL 182 Query 192 HARTAAQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTTGCDGVVIGRGC 251 HARTA+QRYSGTADW +I RLK+HV +P+LGNGDI+DA DA MM+ TGCDGVV+GRGC Sbjct 183 HARTASQRYSGTADWNEITRLKEHVTDVPILGNGDIFDASDAARMMNETGCDGVVVGRGC 242 Query 252 LGRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAWYL 311 LGRPWLFAELSAA G TPPTLGEV II RH LLAAH GE KG+R++RKH++WY+ Sbjct 243 LGRPWLFAELSAALNGQQIATPPTLGEVTKIIARHAQLLAAHHGEMKGLRELRKHVSWYM 302 Query 312 HGFPAGSALRRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSPARVALPDGWLT 371 GFP GS LR ++A+V T ELD LL +LD VPFP A G RGRQGSP +VALP+GWL Sbjct 303 RGFPVGSDLRVSMALVSTLSELDDLLGQLDHDVPFPKDAEGPRGRQGSPGQVALPEGWLD 362 Query 372 DPDDCRVPEGADAMGSGG 389 DP+D VP GAD M SGG Sbjct 363 DPEDDLVPVGADMMHSGG 380 >gi|319950652|ref|ZP_08024556.1| TIM-barrel protein, nifR3 family [Dietzia cinnamea P4] gi|319435694|gb|EFV90910.1| TIM-barrel protein, nifR3 family [Dietzia cinnamea P4] Length=392 Score = 558 bits (1439), Expect = 5e-157, Method: Compositional matrix adjust. Identities = 278/384 (73%), Positives = 310/384 (81%), Gaps = 4/384 (1%) Query 10 SPALRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIER 69 SPALRIGP+ELASPVVLAPMAGVTNVAFR LCR++E+ + G+VSGLYVCEMVTARAL+ER Sbjct 9 SPALRIGPLELASPVVLAPMAGVTNVAFRTLCREIEREQQGSVSGLYVCEMVTARALVER 68 Query 70 HPVTMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRG 129 P T+HM TF+ DESPRSLQLYTVD + TYAAARMI E LADHID+NFGCPVPKVT+RG Sbjct 69 QPATLHMATFAPDESPRSLQLYTVDAEYTYAAARMIVDENLADHIDINFGCPVPKVTRRG 128 Query 130 GGAALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAV 189 GG+A+P+KRRLF IVAAAVRATEGTDIPVTVK R+GIDD HHTHLDAGRIA EGA AV Sbjct 129 GGSAIPYKRRLFRSIVAAAVRATEGTDIPVTVKMRVGIDDEHHTHLDAGRIAVEEGAKAV 188 Query 190 ALHARTAAQRYSGTADWEQIARLKQH---VRTIPVLGNGDIYDAGDALAMMSTTGCDGVV 246 ALHARTAAQRYSG ADW QI+RL +H V +PVLGNGDI+ A DA+ M TGC GVV Sbjct 189 ALHARTAAQRYSGEADWSQISRLVEHVGAVSDVPVLGNGDIFSAQDAVRMREQTGCAGVV 248 Query 247 IGRGCLGRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKH 306 IGRGCLGRPWLF+EL+A G AP PPTLGEVA I+ RHG LLA H GEDKGMRDIRKH Sbjct 249 IGRGCLGRPWLFSELAARLAGREAPAPPTLGEVARIMYRHGELLAEHHGEDKGMRDIRKH 308 Query 307 IAWYLHGFPAGSALRRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSPARVALP 366 +AWYL GFPAGS R AL+ V+T D+L +L L PFP G RGRQGSP++V LP Sbjct 309 VAWYLRGFPAGSEKRVALSAVRTLDDLAAMLADLPPDEPFPADGYGPRGRQGSPSKVLLP 368 Query 367 DGWLTDP-DDCRVPEGADAMGSGG 389 +GWL DP DD GADA SGG Sbjct 369 EGWLDDPEDDAVALAGADAENSGG 392 >gi|296141212|ref|YP_003648455.1| hypothetical protein Tpau_3537 [Tsukamurella paurometabola DSM 20162] gi|296029346|gb|ADG80116.1| TIM-barrel protein, nifR3 family [Tsukamurella paurometabola DSM 20162] Length=396 Score = 554 bits (1427), Expect = 1e-155, Method: Compositional matrix adjust. Identities = 278/391 (72%), Positives = 309/391 (80%), Gaps = 11/391 (2%) Query 10 SPALRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIER 69 P LRIG EL SPVVLAPMAGVTNVAFR+LCR+LE+++ GTV+GLYVCEMVTARAL+ER Sbjct 6 QPKLRIGRFELDSPVVLAPMAGVTNVAFRSLCRELERARTGTVAGLYVCEMVTARALVER 65 Query 70 HPVTMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRG 129 HPVTMHMTTF+ DE PRSLQLYTVD TY AARMIA EGLADH+DMNFGCPVPK+T+RG Sbjct 66 HPVTMHMTTFAPDEDPRSLQLYTVDAHYTYEAARMIAEEGLADHLDMNFGCPVPKITRRG 125 Query 130 GGAALPFKRRLFGQIVAAAVRATE----GTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEG 185 GG+ALP+KR LF IV AAVR E G IPVTVKFRIGIDD HHTHLDAGRIA +G Sbjct 126 GGSALPYKRNLFASIVDAAVRGIEDGGQGGRIPVTVKFRIGIDDEHHTHLDAGRIAAEQG 185 Query 186 AAAVALHARTAAQRYSGTADWEQIARLKQHVR-----TIPVLGNGDIYDAGDALAMMSTT 240 A AVALHARTAAQRYSG ADW++IARLK+HV +PVLGNGDI+ A DA+ MM T Sbjct 186 AVAVALHARTAAQRYSGQADWDEIARLKEHVHHHFGDAVPVLGNGDIFAAEDAVTMMDRT 245 Query 241 GCDGVVIGRGCLGRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGM 300 GCDGVV+GRGCLGRPWLF+ELSAA G+P PTPP LGEV +I+ RHG LLAAH GEDKGM Sbjct 246 GCDGVVVGRGCLGRPWLFSELSAALNGTPMPTPPNLGEVTEIMYRHGELLAAHHGEDKGM 305 Query 301 RDIRKHIAWYLHGFPAGSALRRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSP 360 R+IRKH+AWYL GFPAG LR LA VKT +L LLD L VPFP A G RGRQG+P Sbjct 306 REIRKHVAWYLRGFPAGGELRTRLATVKTLTDLRALLDTLPRDVPFPKDAEGPRGRQGTP 365 Query 361 ARVALPDGWLTDP--DDCRVPEGADAMGSGG 389 +V LPDGWL DP D GA+ SGG Sbjct 366 GKVVLPDGWLDDPWEADAAAMPGAETETSGG 396 >gi|23308951|ref|NP_601768.2| TIM-barrel containing enzyme [Corynebacterium glutamicum ATCC 13032] gi|62391408|ref|YP_226810.1| hypothetical protein cg2841 [Corynebacterium glutamicum ATCC 13032] gi|21325342|dbj|BAB99963.1| Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family [Corynebacterium glutamicum ATCC 13032] gi|41326749|emb|CAF21231.1| Predicted TIM-barrel enzyme, possibly dehydrogenase, nifR3 family [Corynebacterium glutamicum ATCC 13032] gi|344043374|gb|EGV39070.1| hypothetical protein CgS9114_15039 [Corynebacterium glutamicum S9114] Length=381 Score = 543 bits (1399), Expect = 2e-152, Method: Compositional matrix adjust. Identities = 264/379 (70%), Positives = 299/379 (79%), Gaps = 2/379 (0%) Query 13 LRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHPV 72 L+IGP +LASPVVLAPMAGVTNVAFR LCR+ E + GT+SGLYVCEMVTARAL+ER+ Sbjct 3 LKIGPFDLASPVVLAPMAGVTNVAFRTLCREQEMQRTGTISGLYVCEMVTARALVERNEK 62 Query 73 TMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGGA 132 TMHMTTF+ DE+PRSLQLYTVDP TY AA+MI E LADHIDMNFGCPVPKVT+RGGG+ Sbjct 63 TMHMTTFAPDENPRSLQLYTVDPKYTYEAAKMIVDENLADHIDMNFGCPVPKVTRRGGGS 122 Query 133 ALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVALH 192 A+P+KRRLF IV+AAV+ATEGTDIPVTVKFR+GIDD HHTHLDAGRIA GA +VALH Sbjct 123 AIPYKRRLFENIVSAAVKATEGTDIPVTVKFRVGIDDEHHTHLDAGRIAVDAGAKSVALH 182 Query 193 ARTAAQRYSGTADWEQIARLKQHVRT--IPVLGNGDIYDAGDALAMMSTTGCDGVVIGRG 250 ARTAAQRYSG ADW +IARLK+H+ IPVLGNGDI+ A DA MM TGCDGVV+GRG Sbjct 183 ARTAAQRYSGEADWNEIARLKEHLADTGIPVLGNGDIFAASDATRMMEQTGCDGVVVGRG 242 Query 251 CLGRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAWY 310 CLGRPWLFAELSAA G P PT GEV II RH LL H GE KG+RD+RKH+ WY Sbjct 243 CLGRPWLFAELSAAVRGEEIPEEPTFGEVTQIILRHAELLMQHDGETKGLRDLRKHMGWY 302 Query 311 LHGFPAGSALRRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSPARVALPDGWL 370 L GFP G R LA V T+ EL+ LL + + A GARGRQG+PA+VALPDGWL Sbjct 303 LRGFPVGGEFRSNLAKVSTYVELEDLLAPWADSTAKAEDAEGARGRQGAPAKVALPDGWL 362 Query 371 TDPDDCRVPEGADAMGSGG 389 DP+D VP+GA+ SGG Sbjct 363 DDPEDATVPKGAEMENSGG 381 >gi|213966461|ref|ZP_03394635.1| dihydrouridine synthase TIM-barrel protein nifR3 [Corynebacterium amycolatum SK46] gi|213950887|gb|EEB62295.1| dihydrouridine synthase TIM-barrel protein nifR3 [Corynebacterium amycolatum SK46] Length=385 Score = 543 bits (1398), Expect = 2e-152, Method: Compositional matrix adjust. Identities = 272/385 (71%), Positives = 305/385 (80%), Gaps = 8/385 (2%) Query 13 LRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHPV 72 + IGP ELASPVVLAPMAGVTNVAFR LCR+ E + GTVSGLYVCEMVTARAL+ER+ Sbjct 1 MHIGPFELASPVVLAPMAGVTNVAFRTLCREQELQRTGTVSGLYVCEMVTARALVERNEK 60 Query 73 TMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGGA 132 TMHMTTF+ DE+PRSLQLYT DP TY AA+MI E LADHIDMNFGCPVPKVT++GGG+ Sbjct 61 TMHMTTFAPDENPRSLQLYTTDPKWTYEAAKMIVDENLADHIDMNFGCPVPKVTRKGGGS 120 Query 133 ALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVALH 192 ALP+KRRLFG IVAAAV+ATEGTDIPVTVKFR+GIDD HHTHLDAGRIA GA AVALH Sbjct 121 ALPYKRRLFGNIVAAAVKATEGTDIPVTVKFRVGIDDEHHTHLDAGRIAAEMGAQAVALH 180 Query 193 ARTAAQRYSGTADWEQIARLKQHV-----RTIPVLGNGDIYDAGDALAMMSTTGCDGVVI 247 ARTAAQRYSG ADW QIARLK+H+ IPVLGNGDI+ + DA M+ TGCDGVV+ Sbjct 181 ARTAAQRYSGHADWSQIARLKEHMVDSSFSDIPVLGNGDIFASTDARKMLDETGCDGVVV 240 Query 248 GRGCLGRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHI 307 GRGCLGRPWLFA+LSA G P PT GEVA IIRRH LL H GE KG RD+RKHI Sbjct 241 GRGCLGRPWLFAQLSAELRGEEVPPAPTFGEVAGIIRRHAELLVEHEGERKGCRDLRKHI 300 Query 308 AWYLHGFPAGSALRRALAMVKTFDELDCLLDRL-DGTVPF--PDSATGARGRQGSPARVA 364 AWYL G+PAGS +R++LA V + LD +L L DG P+ A GARGRQGSPA+V Sbjct 301 AWYLRGYPAGSEVRKSLARVDSLATLDEILTPLYDGPSAHARPEDADGARGRQGSPAKVV 360 Query 365 LPDGWLTDPDDCRVPEGADAMGSGG 389 LP+GWL DP+D VPEGA+ M SGG Sbjct 361 LPEGWLDDPEDDTVPEGAEIMHSGG 385 >gi|68535448|ref|YP_250153.1| hypothetical protein jk0383 [Corynebacterium jeikeium K411] gi|68263047|emb|CAI36535.1| hypothetical protein jk0383 [Corynebacterium jeikeium K411] Length=389 Score = 539 bits (1389), Expect = 3e-151, Method: Compositional matrix adjust. Identities = 271/384 (71%), Positives = 310/384 (81%), Gaps = 2/384 (0%) Query 8 QPSPALRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALI 67 Q L+IG +EL SPVVLAPMAGVTNVAFR+LCR+ E+ ++G+V+GLYVCEMVTARAL+ Sbjct 6 QQFQGLKIGKMELDSPVVLAPMAGVTNVAFRSLCREQERERMGSVAGLYVCEMVTARALV 65 Query 68 ERHPVTMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTK 127 ER+P T+HMTTF+ DE PRSLQLYT DP+ TY AA+MI E LADHIDMNFGCPVPKVT+ Sbjct 66 ERNPKTLHMTTFAPDEDPRSLQLYTTDPEYTYKAAKMIVDENLADHIDMNFGCPVPKVTR 125 Query 128 RGGGAALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAA 187 RGGG+ALP+KR+LFG IVAAAV+ATEGTDIPVTVK R+GIDD HHTHLDAGRIA EGAA Sbjct 126 RGGGSALPYKRKLFGNIVAAAVKATEGTDIPVTVKMRVGIDDEHHTHLDAGRIAVEEGAA 185 Query 188 AVALHARTAAQRYSGTADWEQIARLKQHV--RTIPVLGNGDIYDAGDALAMMSTTGCDGV 245 AVALH RTAAQRYSG ADW +IARLK+H+ IPVLGNGDI+ A DA AMM TGCDGV Sbjct 186 AVALHGRTAAQRYSGHADWNEIARLKEHLAHTGIPVLGNGDIFKATDARAMMEQTGCDGV 245 Query 246 VIGRGCLGRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRK 305 V+GRGCLGRPWLFAELSA G P P+ PTLGEVA II RH LLAAH GE K RD+RK Sbjct 246 VVGRGCLGRPWLFAELSAELRGLPIPSEPTLGEVARIILRHAELLAAHDGEQKACRDLRK 305 Query 306 HIAWYLHGFPAGSALRRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSPARVAL 365 H+ WYL GFPAG LRR+L+ V + DEL L + + + A GARGRQGSPA+VAL Sbjct 306 HMTWYLRGFPAGGELRRSLSRVSSLDELKSALAEVWDSPALAEDADGARGRQGSPAKVAL 365 Query 366 PDGWLTDPDDCRVPEGADAMGSGG 389 P+GWL DP+D VP+GAD SGG Sbjct 366 PEGWLDDPEDETVPDGADIENSGG 389 >gi|343926086|ref|ZP_08765598.1| putative tRNA-dihydrouridine synthase [Gordonia alkanivorans NBRC 16433] gi|343764012|dbj|GAA12524.1| putative tRNA-dihydrouridine synthase [Gordonia alkanivorans NBRC 16433] Length=361 Score = 535 bits (1379), Expect = 4e-150, Method: Compositional matrix adjust. Identities = 265/361 (74%), Positives = 301/361 (84%), Gaps = 0/361 (0%) Query 29 MAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHPVTMHMTTFSADESPRSL 88 MAGVTNVAFR LCR+LE ++ GTVSGLYVCEMVTARAL+ERHPVTMHMTTF DE+PRS+ Sbjct 1 MAGVTNVAFRTLCRELELARTGTVSGLYVCEMVTARALVERHPVTMHMTTFGPDENPRSM 60 Query 89 QLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGGAALPFKRRLFGQIVAAA 148 QLYTVDP+ TY AA+MI E LADHIDMNFGCPVPKVT++GGG+A+P+KR LF +IVAAA Sbjct 61 QLYTVDPEYTYEAAKMIVDENLADHIDMNFGCPVPKVTRKGGGSAIPYKRTLFRKIVAAA 120 Query 149 VRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVALHARTAAQRYSGTADWEQ 208 VRATEGTDIPVTVKFRIGIDD H THLDAGRIA EGAAAVALHARTA+QRYSG ADW + Sbjct 121 VRATEGTDIPVTVKFRIGIDDDHRTHLDAGRIAAEEGAAAVALHARTASQRYSGEADWNE 180 Query 209 IARLKQHVRTIPVLGNGDIYDAGDALAMMSTTGCDGVVIGRGCLGRPWLFAELSAAFTGS 268 IARLK+HV ++PVLGNGDI++ DA+AMM+ TGCDGVV+GRGCLGRPWLFAEL+A G Sbjct 181 IARLKEHVTSVPVLGNGDIFEPADAVAMMNRTGCDGVVVGRGCLGRPWLFAELAAELNGF 240 Query 269 PAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAWYLHGFPAGSALRRALAMVK 328 APTPP LGEVA+I+ RH LL H GE KG R+IRKH+AWYL GFPAGS +RR +A+V Sbjct 241 DAPTPPNLGEVAEIMVRHCQLLVDHHGEMKGCREIRKHVAWYLRGFPAGSEIRRRMALVG 300 Query 329 TFDELDCLLDRLDGTVPFPDSATGARGRQGSPARVALPDGWLTDPDDCRVPEGADAMGSG 388 + DEL LL L PFP G RGRQGSPA+VALPDGWL DPD+ VP GA+ M SG Sbjct 301 SVDELRELLSELPADAPFPSDGHGPRGRQGSPAKVALPDGWLDDPDEDVVPAGAEIMHSG 360 Query 389 G 389 G Sbjct 361 G 361 >gi|25029017|ref|NP_739071.1| putative transcription regulator [Corynebacterium efficiens YS-314] gi|259505993|ref|ZP_05748895.1| tRNA-dihydrouridine synthase [Corynebacterium efficiens YS-314] gi|23494304|dbj|BAC19271.1| putative transcription regulator [Corynebacterium efficiens YS-314] gi|259166474|gb|EEW51028.1| tRNA-dihydrouridine synthase [Corynebacterium efficiens YS-314] Length=381 Score = 535 bits (1377), Expect = 7e-150, Method: Compositional matrix adjust. Identities = 263/379 (70%), Positives = 298/379 (79%), Gaps = 2/379 (0%) Query 13 LRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHPV 72 L+IGP +LASPV+LAPMAGVTNVAFR LCR+ E + GT+SGLYVCEMVTARAL+ER+ Sbjct 3 LKIGPFDLASPVILAPMAGVTNVAFRTLCREQEMQRTGTISGLYVCEMVTARALVERNEK 62 Query 73 TMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGGA 132 T+HMTTF+ DE+PRSLQLYTVDP TY AA+MI E LADHIDMNFGCPVPKVT+RGGG+ Sbjct 63 TLHMTTFAPDENPRSLQLYTVDPQYTYEAAKMIVDENLADHIDMNFGCPVPKVTRRGGGS 122 Query 133 ALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVALH 192 A+P+KRRLF IV+AAVRATEGTDIPVTVKFR+GIDD HHTHLDAGRIA GA +VALH Sbjct 123 AIPYKRRLFENIVSAAVRATEGTDIPVTVKFRVGIDDEHHTHLDAGRIAVDAGAKSVALH 182 Query 193 ARTAAQRYSGTADWEQIARLKQHVRT--IPVLGNGDIYDAGDALAMMSTTGCDGVVIGRG 250 ARTAAQRYSG ADW +IARLK+H+ +PVLGNGDI+ A DA MM TGCDGVV+GRG Sbjct 183 ARTAAQRYSGQADWNEIARLKEHLADTGVPVLGNGDIFAAEDATRMMEQTGCDGVVVGRG 242 Query 251 CLGRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAWY 310 CLGRPWLFAELSAA G P P PTLGEV II RH LL H GE KG+RD+RKH+ WY Sbjct 243 CLGRPWLFAELSAAVRGEPIPEEPTLGEVTRIILRHAELLMQHDGELKGIRDLRKHMGWY 302 Query 311 LHGFPAGSALRRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSPARVALPDGWL 370 L GFP G R LA V T+ EL LL + + A GARGR+GS A+VALPDGWL Sbjct 303 LRGFPVGGEFRANLARVSTYAELGELLAPWGTSTARAEDADGARGRKGSSAKVALPDGWL 362 Query 371 TDPDDCRVPEGADAMGSGG 389 DP+D VP GA+ SGG Sbjct 363 DDPEDDTVPVGAEMENSGG 381 >gi|260578340|ref|ZP_05846255.1| tRNA-dihydrouridine synthase [Corynebacterium jeikeium ATCC 43734] gi|258603521|gb|EEW16783.1| tRNA-dihydrouridine synthase [Corynebacterium jeikeium ATCC 43734] Length=374 Score = 532 bits (1371), Expect = 3e-149, Method: Compositional matrix adjust. Identities = 267/374 (72%), Positives = 305/374 (82%), Gaps = 2/374 (0%) Query 18 IELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHPVTMHMT 77 +EL SPVVLAPMAGVTNVAFR+LCR+ E+ ++G+V+GLYVCEMVTARAL+ER+P T+HMT Sbjct 1 MELDSPVVLAPMAGVTNVAFRSLCREQERERMGSVAGLYVCEMVTARALVERNPKTLHMT 60 Query 78 TFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGGAALPFK 137 TF+ DE PRSLQLYT DP+ TY AA+MI E LADHIDMNFGCPVPKVT+RGGG+ALP+K Sbjct 61 TFAPDEDPRSLQLYTTDPEYTYKAAKMIVDENLADHIDMNFGCPVPKVTRRGGGSALPYK 120 Query 138 RRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVALHARTAA 197 R+LFG IVAAAV+ATEGTDIPVTVK R+GIDD HHTHLDAGRIA EGAAAVALH RTAA Sbjct 121 RKLFGNIVAAAVKATEGTDIPVTVKMRVGIDDEHHTHLDAGRIAVEEGAAAVALHGRTAA 180 Query 198 QRYSGTADWEQIARLKQHV--RTIPVLGNGDIYDAGDALAMMSTTGCDGVVIGRGCLGRP 255 QRYSG ADW +IARLK+H+ IPVLGNGDI+ A DA AMM TGCDGVV+GRGCLGRP Sbjct 181 QRYSGHADWNEIARLKEHLAHTGIPVLGNGDIFKATDARAMMEQTGCDGVVVGRGCLGRP 240 Query 256 WLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAWYLHGFP 315 WLFAELSA G P P+ PTLGEVA II RH LLAAH GE K RD+RKH+ WYL GFP Sbjct 241 WLFAELSAELRGLPIPSEPTLGEVARIILRHAELLAAHDGEQKACRDLRKHMTWYLRGFP 300 Query 316 AGSALRRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSPARVALPDGWLTDPDD 375 AG LRR+L+ V + DEL L + + + A GARGRQGSPA+VALP+GWL DP+D Sbjct 301 AGGELRRSLSRVSSLDELKSALAEVWDSPALAEDADGARGRQGSPAKVALPEGWLDDPED 360 Query 376 CRVPEGADAMGSGG 389 VP+GAD SGG Sbjct 361 ETVPDGADIENSGG 374 >gi|227506387|ref|ZP_03936436.1| possible tRNA-dihydrouridine synthase [Corynebacterium striatum ATCC 6940] gi|227197038|gb|EEI77086.1| possible tRNA-dihydrouridine synthase [Corynebacterium striatum ATCC 6940] Length=381 Score = 531 bits (1369), Expect = 5e-149, Method: Compositional matrix adjust. Identities = 269/379 (71%), Positives = 298/379 (79%), Gaps = 2/379 (0%) Query 13 LRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHPV 72 L IG IEL SPVVLAPMAGVTNVAFR LCR+ E K GTVSGLYVCEMVTARAL+ER+ Sbjct 3 LAIGKIELNSPVVLAPMAGVTNVAFRTLCREQEIEKTGTVSGLYVCEMVTARALVERNEK 62 Query 73 TMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGGA 132 TMHMTTF +E+PRSLQLYTVDP+ TY AA+MI E LADHIDMNFGCPVPKVT+RGGG+ Sbjct 63 TMHMTTFGPEENPRSLQLYTVDPEYTYKAAKMIVDENLADHIDMNFGCPVPKVTRRGGGS 122 Query 133 ALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVALH 192 ALP+KRRLFG I+AAAV+ATEGTDIPVTVK R+GIDD HHTHLDAGRIA EGAAAVALH Sbjct 123 ALPYKRRLFGNIIAAAVKATEGTDIPVTVKMRVGIDDEHHTHLDAGRIAVEEGAAAVALH 182 Query 193 ARTAAQRYSGTADWEQIARLKQHV--RTIPVLGNGDIYDAGDALAMMSTTGCDGVVIGRG 250 RTAAQRYSG ADW +IARLK+H+ IPVLGNGDI+ A DA AMM TGCDGVV+GRG Sbjct 183 GRTAAQRYSGHADWNEIARLKEHLADSGIPVLGNGDIFKATDARAMMEQTGCDGVVVGRG 242 Query 251 CLGRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAWY 310 CLGRPWLFAELSA G P P PTLGEV + RH LLA H GE + RDIRKH+ WY Sbjct 243 CLGRPWLFAELSAELRGEPIPAEPTLGEVTKTMIRHAELLAQHDGERQASRDIRKHVGWY 302 Query 311 LHGFPAGSALRRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSPARVALPDGWL 370 L GFP G +R LA V++ D L LL + D A GARGRQGSPA+V LP+GWL Sbjct 303 LRGFPVGGEVRSGLARVESVDNLRELLAPWANSQALADDADGARGRQGSPAKVVLPEGWL 362 Query 371 TDPDDCRVPEGADAMGSGG 389 DP+D VPEGA+ M SGG Sbjct 363 DDPEDATVPEGAEIMHSGG 381 >gi|336324665|ref|YP_004604631.1| putative dihydrouridine synthase [Corynebacterium resistens DSM 45100] gi|336100647|gb|AEI08467.1| putative dihydrouridine synthase [Corynebacterium resistens DSM 45100] Length=394 Score = 530 bits (1364), Expect = 2e-148, Method: Compositional matrix adjust. Identities = 264/379 (70%), Positives = 305/379 (81%), Gaps = 1/379 (0%) Query 12 ALRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHP 71 ALRIG + L SPVVLAPMAG+TNVAFR LCR+ E+ K+G+VSGLYVCEMVTARAL+ER+P Sbjct 16 ALRIGSLRLNSPVVLAPMAGITNVAFRTLCREQEREKIGSVSGLYVCEMVTARALVERNP 75 Query 72 VTMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGG 131 T+HMTTF DE PRSLQLYT DP TY AA+MI E +ADHIDMNFGCPVPKVT+RGGG Sbjct 76 KTLHMTTFGPDEQPRSLQLYTTDPKYTYEAAKMIVDENMADHIDMNFGCPVPKVTRRGGG 135 Query 132 AALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVAL 191 +ALP+KRRLFG IVAAAV+ATEGTDIPVTVKFR+GIDD HHTHLDAGRIA EGAAAVAL Sbjct 136 SALPYKRRLFGNIVAAAVKATEGTDIPVTVKFRVGIDDEHHTHLDAGRIAADEGAAAVAL 195 Query 192 HARTAAQRYSGTADWEQIARLKQHVR-TIPVLGNGDIYDAGDALAMMSTTGCDGVVIGRG 250 HARTAAQRYSG A+W++I RL +H+ +PVLGNGDI+ A DA AMM TGCDGVV+GRG Sbjct 196 HARTAAQRYSGDANWDEITRLVEHMDGRVPVLGNGDIFKATDARAMMDRTGCDGVVVGRG 255 Query 251 CLGRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAWY 310 CLGRPWLFAEL+A G P P PPTLGEVA I+ RH LLA H GE K RD+RKH+ WY Sbjct 256 CLGRPWLFAELAAELQGLPVPAPPTLGEVARIVLRHAELLAEHDGEFKACRDMRKHMTWY 315 Query 311 LHGFPAGSALRRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSPARVALPDGWL 370 + GFPAG +RR LA +++ +L LD + + D A G RGRQGSPA+V LP+GWL Sbjct 316 MRGFPAGGEIRRTLATIESLADLRAALDPIWESSALADDADGPRGRQGSPAKVLLPEGWL 375 Query 371 TDPDDCRVPEGADAMGSGG 389 DP+D VP+GA+ M SGG Sbjct 376 DDPEDDTVPDGAEIMHSGG 394 >gi|227833973|ref|YP_002835680.1| hypothetical protein cauri_2149 [Corynebacterium aurimucosum ATCC 700975] gi|262183538|ref|ZP_06042959.1| hypothetical protein CaurA7_06061 [Corynebacterium aurimucosum ATCC 700975] gi|227454989|gb|ACP33742.1| hypothetical protein cauri_2149 [Corynebacterium aurimucosum ATCC 700975] Length=381 Score = 521 bits (1341), Expect = 1e-145, Method: Compositional matrix adjust. Identities = 267/379 (71%), Positives = 297/379 (79%), Gaps = 2/379 (0%) Query 13 LRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHPV 72 L IG I+L SPVVLAPMAGVTNVAFR LCR+ E K GTVSGLYVCEMVTARAL+ER+P Sbjct 3 LAIGKIQLNSPVVLAPMAGVTNVAFRVLCREQEIEKTGTVSGLYVCEMVTARALVERNPK 62 Query 73 TMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGGA 132 T+HMTTF E PRSLQLYTVDP+ TY AA+MI E LADHIDMNFGCPVPKVT+RGGG+ Sbjct 63 TLHMTTFDPQEQPRSLQLYTVDPEYTYKAAKMIVDENLADHIDMNFGCPVPKVTRRGGGS 122 Query 133 ALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVALH 192 ALP+KRRLFG IVAAAV+ATEGTDIPVTVK R+GID+ H THLDAGRIA AEGAAAVALH Sbjct 123 ALPYKRRLFGNIVAAAVKATEGTDIPVTVKMRVGIDEEHKTHLDAGRIAVAEGAAAVALH 182 Query 193 ARTAAQRYSGTADWEQIARLKQHVRT--IPVLGNGDIYDAGDALAMMSTTGCDGVVIGRG 250 RTAAQRYSG ADW +IARLK+H+ IPVLGNGDI+ A DA MM TGCDGVV+GRG Sbjct 183 GRTAAQRYSGHADWGEIARLKEHLADTGIPVLGNGDIFKATDAHDMMKQTGCDGVVVGRG 242 Query 251 CLGRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAWY 310 CLGRPWLFAELSA G P P PTLGEV I+ RH LLA H GE + RDIRKHI WY Sbjct 243 CLGRPWLFAELSAHLRGEPVPEEPTLGEVTRIMIRHAELLAQHEGEAQASRDIRKHIGWY 302 Query 311 LHGFPAGSALRRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSPARVALPDGWL 370 L GFP G +R L+ V + ++L LL + D A GARGRQGSPA+V LP+GWL Sbjct 303 LRGFPVGGQVRAGLSRVNSLNDLRELLAPWADSPALADDADGARGRQGSPAKVVLPEGWL 362 Query 371 TDPDDCRVPEGADAMGSGG 389 DP+D VPEGA+ M SGG Sbjct 363 DDPEDATVPEGAEIMHSGG 381 >gi|172041286|ref|YP_001801000.1| hypothetical protein cur_1606 [Corynebacterium urealyticum DSM 7109] gi|171852590|emb|CAQ05566.1| hypothetical protein cu1606 [Corynebacterium urealyticum DSM 7109] Length=442 Score = 520 bits (1338), Expect = 2e-145, Method: Compositional matrix adjust. Identities = 263/378 (70%), Positives = 301/378 (80%), Gaps = 1/378 (0%) Query 13 LRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHPV 72 L IG ++L SPVVLAPMAGVTNVAFR LCR+ E+ ++G+V+GLYVCEMVTARAL+ER+P Sbjct 65 LSIGTLKLDSPVVLAPMAGVTNVAFRTLCREQERERMGSVAGLYVCEMVTARALVERNPK 124 Query 73 TMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGGA 132 T+HMTTF+ DE PRSLQLYT DP TY AA+MI E +ADHIDMNFGCP+PKVT+RGGGA Sbjct 125 TLHMTTFAPDEDPRSLQLYTTDPKYTYEAAKMIVDENMADHIDMNFGCPMPKVTRRGGGA 184 Query 133 ALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVALH 192 ALP+KRRLFG IVAAAV+ATEGTDIPVTVK RIGIDD H THLDAGRIA EGAAAVALH Sbjct 185 ALPYKRRLFGNIVAAAVKATEGTDIPVTVKMRIGIDDEHRTHLDAGRIAADEGAAAVALH 244 Query 193 ARTAAQRYSGTADWEQIARLKQHVR-TIPVLGNGDIYDAGDALAMMSTTGCDGVVIGRGC 251 RTAAQRY+G ADW +IARL +H+ +PVLGNGDI+ A DA AMM TGCDGVV+GRGC Sbjct 245 GRTAAQRYAGDADWSEIARLVEHMDGRVPVLGNGDIFKATDARAMMDQTGCDGVVVGRGC 304 Query 252 LGRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAWYL 311 LGRPWLFAELSA G P P P LGEVA II RH LLA H GED+ RD+RKH+ WY+ Sbjct 305 LGRPWLFAELSAELRGLPVPAEPPLGEVARIIMRHAELLAEHDGEDRACRDLRKHMTWYM 364 Query 312 HGFPAGSALRRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSPARVALPDGWLT 371 GFPAG LRR+L+ V + EL +LD + + + A GARGRQGSPA+V LPDGWL Sbjct 365 RGFPAGGELRRSLSKVSSLAELREVLDPIWDSEALANDADGARGRQGSPAKVQLPDGWLD 424 Query 372 DPDDCRVPEGADAMGSGG 389 DP+D VP GAD SGG Sbjct 425 DPEDETVPVGADIENSGG 442 >gi|306836817|ref|ZP_07469775.1| dihydrouridine synthase [Corynebacterium accolens ATCC 49726] gi|304567278|gb|EFM42885.1| dihydrouridine synthase [Corynebacterium accolens ATCC 49726] Length=381 Score = 520 bits (1338), Expect = 2e-145, Method: Compositional matrix adjust. Identities = 259/379 (69%), Positives = 294/379 (78%), Gaps = 2/379 (0%) Query 13 LRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHPV 72 LRIG +L+SPV+LAPMAGVTNVAFR LCR+ E ++ GTVSGLYVCEMVTARAL+ER+ Sbjct 3 LRIGNYDLSSPVILAPMAGVTNVAFRTLCREQELARTGTVSGLYVCEMVTARALVERNEK 62 Query 73 TMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGGA 132 TMHMTTF+ DE PRSLQ+YTVDP+ TY AA++I E LADHIDMNFGCPVPKVT+RGGG+ Sbjct 63 TMHMTTFAPDEDPRSLQIYTVDPEYTYKAAKIIVDENLADHIDMNFGCPVPKVTRRGGGS 122 Query 133 ALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVALH 192 ALP+KRRLFG IV+AAV+ATEGT+IPVTVK R+GIDD HHTHLDAGRIA GAAAV LH Sbjct 123 ALPYKRRLFGNIVSAAVKATEGTNIPVTVKMRVGIDDEHHTHLDAGRIAVDSGAAAVTLH 182 Query 193 ARTAAQRYSGTADWEQIARLKQHVRT--IPVLGNGDIYDAGDALAMMSTTGCDGVVIGRG 250 RTAAQRYSG A W++IARLK+H+ +PVLGNGDI+ A DA MM TGCDGV +GRG Sbjct 183 GRTAAQRYSGDARWDEIARLKEHLADTGVPVLGNGDIFRADDARRMMEATGCDGVQVGRG 242 Query 251 CLGRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAWY 310 CLGRPWLFAELSAA G P PTLGEV +I RH LLA H GED RDIRKHI WY Sbjct 243 CLGRPWLFAELSAALRGESIPAEPTLGEVTQVIHRHAELLAQHEGEDHASRDIRKHIGWY 302 Query 311 LHGFPAGSALRRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSPARVALPDGWL 370 L GFP G +R LA V + + L LL + A GARGRQGSP++VALPDGWL Sbjct 303 LRGFPVGGQVRAGLAKVDSLESLRELLQPWADSDALAADADGARGRQGSPSKVALPDGWL 362 Query 371 TDPDDCRVPEGADAMGSGG 389 DP+D VP GAD SGG Sbjct 363 DDPEDEFVPVGADIYNSGG 381 >gi|145296565|ref|YP_001139386.1| hypothetical protein cgR_2473 [Corynebacterium glutamicum R] gi|140846485|dbj|BAF55484.1| hypothetical protein [Corynebacterium glutamicum R] Length=363 Score = 517 bits (1332), Expect = 1e-144, Method: Compositional matrix adjust. Identities = 251/363 (70%), Positives = 284/363 (79%), Gaps = 2/363 (0%) Query 29 MAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHPVTMHMTTFSADESPRSL 88 MAGVTNVAFR LCR+ E + GT+SGLYVCEMVTARAL+ER+ TMHMTTF+ DE+PRSL Sbjct 1 MAGVTNVAFRTLCREQEMQRTGTISGLYVCEMVTARALVERNEKTMHMTTFAPDENPRSL 60 Query 89 QLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGGAALPFKRRLFGQIVAAA 148 QLYTVDP TY AA+MI E LADHIDMNFGCPVPKVT+RGGG+A+P+KRRLF IV+AA Sbjct 61 QLYTVDPKYTYEAAKMIVDENLADHIDMNFGCPVPKVTRRGGGSAIPYKRRLFENIVSAA 120 Query 149 VRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVALHARTAAQRYSGTADWEQ 208 V+ATEGTDIPVTVKFR+GIDD HHTHLDAGRIA GA +VALHARTAAQRYSG ADW + Sbjct 121 VKATEGTDIPVTVKFRVGIDDEHHTHLDAGRIAVDAGAKSVALHARTAAQRYSGEADWNE 180 Query 209 IARLKQHVRT--IPVLGNGDIYDAGDALAMMSTTGCDGVVIGRGCLGRPWLFAELSAAFT 266 IARLK+H+ IPVLGNGDI+ A DA MM TGCDGVV+GRGCLGRPWLFAELSAA Sbjct 181 IARLKEHLADTGIPVLGNGDIFAASDATRMMEQTGCDGVVVGRGCLGRPWLFAELSAAVR 240 Query 267 GSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAWYLHGFPAGSALRRALAM 326 G P PT GEV II RH LL H GE KG+RD+RKH+ WYL GFP G R LA Sbjct 241 GEEIPEEPTFGEVTQIILRHAELLMQHDGETKGLRDLRKHMGWYLRGFPVGGEFRSNLAK 300 Query 327 VKTFDELDCLLDRLDGTVPFPDSATGARGRQGSPARVALPDGWLTDPDDCRVPEGADAMG 386 V T+ EL+ LL + + A GARGRQG+PA+VALPDGWL DP+D VP+GA+ Sbjct 301 VSTYVELEDLLAPWADSTAKAEDAEGARGRQGAPAKVALPDGWLDDPEDATVPKGAEMEN 360 Query 387 SGG 389 SGG Sbjct 361 SGG 363 >gi|300790789|ref|YP_003771080.1| dihydrouridine synthase [Amycolatopsis mediterranei U32] gi|299800303|gb|ADJ50678.1| putative dihydrouridine synthase [Amycolatopsis mediterranei U32] Length=379 Score = 516 bits (1330), Expect = 2e-144, Method: Compositional matrix adjust. Identities = 259/389 (67%), Positives = 294/389 (76%), Gaps = 10/389 (2%) Query 1 MSRRRAIQPSPALRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEM 60 M A PAL+IGP E+ PVVLAPMAG+TNVAFR LC + +G+YVCEM Sbjct 1 MEDVTATLSKPALKIGPYEVDPPVVLAPMAGITNVAFRQLCAEYG-------AGIYVCEM 53 Query 61 VTARALIERHPVTMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGC 120 +TARA++ERHP TMHM TF ADE PRS+QLY VDP T A R+I GEGLADH+D NFGC Sbjct 54 ITARAVVERHPGTMHMMTFGADEKPRSMQLYGVDPKTIAEAVRIIVGEGLADHVDSNFGC 113 Query 121 PVPKVTKRGGGAALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRI 180 PV KVT++GGGAALPFKR+LF IV +V+A D P TVKFRIGIDD H T LDAGRI Sbjct 114 PVAKVTRKGGGAALPFKRKLFEAIVRESVKAA--GDTPFTVKFRIGIDDDHRTFLDAGRI 171 Query 181 AEAEGAAAVALHARTAAQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTT 240 AEAEGAAAV+LHARTAAQRYSG ADW +IA LK+ V +IPVLGNGDI+ A DAL M+ T Sbjct 172 AEAEGAAAVSLHARTAAQRYSGQADWTKIAELKEAVTSIPVLGNGDIFSAEDALRMVDET 231 Query 241 GCDGVVIGRGCLGRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGM 300 GCDGVV+GRGCLGRPWLF EL AAF G P PTPP LGEVA ++RRH LL H G DK M Sbjct 232 GCDGVVVGRGCLGRPWLFGELEAAFAGRPLPTPPNLGEVAAVLRRHTELLIEHDGHDKAM 291 Query 301 RDIRKHIAWYLHGFPAGSALRRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSP 360 RDIRKH+AWYL GFP GS LRR AM+ + D+LD L+ +LD PFP++ATG RGRQGSP Sbjct 292 RDIRKHMAWYLMGFPVGSELRRGFAMLSSMDQLDDLIAQLDHDAPFPEAATGPRGRQGSP 351 Query 361 ARVALPDGWLTDPDDCRVPEGADAMGSGG 389 +V LP GWL DPDD VPE D M SGG Sbjct 352 GKVTLPHGWLDDPDDDCVPEAED-MHSGG 379 >gi|340532481|gb|AEK47686.1| dihydrouridine synthase [Amycolatopsis mediterranei S699] Length=376 Score = 516 bits (1328), Expect = 3e-144, Method: Compositional matrix adjust. Identities = 257/380 (68%), Positives = 292/380 (77%), Gaps = 10/380 (2%) Query 10 SPALRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIER 69 PAL+IGP E+ PVVLAPMAG+TNVAFR LC + +G+YVCEM+TARA++ER Sbjct 7 KPALKIGPYEVDPPVVLAPMAGITNVAFRQLCAEYG-------AGIYVCEMITARAVVER 59 Query 70 HPVTMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRG 129 HP TMHM TF ADE PRS+QLY VDP T A R+I GEGLADH+D NFGCPV KVT++G Sbjct 60 HPGTMHMMTFGADEKPRSMQLYGVDPKTIAEAVRIIVGEGLADHVDSNFGCPVAKVTRKG 119 Query 130 GGAALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAV 189 GGAALPFKR+LF IV +V+A D P TVKFRIGIDD H T LDAGRIAEAEGAAAV Sbjct 120 GGAALPFKRKLFEAIVRESVKAA--GDTPFTVKFRIGIDDDHRTFLDAGRIAEAEGAAAV 177 Query 190 ALHARTAAQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTTGCDGVVIGR 249 +LHARTAAQRYSG ADW +IA LK+ V +IPVLGNGDI+ A DAL M+ TGCDGVV+GR Sbjct 178 SLHARTAAQRYSGQADWTKIAELKEAVTSIPVLGNGDIFSAEDALRMVDETGCDGVVVGR 237 Query 250 GCLGRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAW 309 GCLGRPWLF EL AAF G P PTPP LGEVA ++RRH LL H G DK MRDIRKH+AW Sbjct 238 GCLGRPWLFGELEAAFAGRPLPTPPNLGEVAAVLRRHTELLIEHDGHDKAMRDIRKHMAW 297 Query 310 YLHGFPAGSALRRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSPARVALPDGW 369 YL GFP GS LRR AM+ + D+LD L+ +LD PFP++ATG RGRQGSP +V LP GW Sbjct 298 YLMGFPVGSELRRGFAMLSSMDQLDDLIAQLDHDAPFPEAATGPRGRQGSPGKVTLPHGW 357 Query 370 LTDPDDCRVPEGADAMGSGG 389 L DPDD VPE D M SGG Sbjct 358 LDDPDDDCVPEAED-MHSGG 376 >gi|296118884|ref|ZP_06837457.1| putative tRNA-dihydrouridine synthase [Corynebacterium ammoniagenes DSM 20306] gi|295967982|gb|EFG81234.1| putative tRNA-dihydrouridine synthase [Corynebacterium ammoniagenes DSM 20306] Length=400 Score = 515 bits (1327), Expect = 4e-144, Method: Compositional matrix adjust. Identities = 261/380 (69%), Positives = 297/380 (79%), Gaps = 2/380 (0%) Query 12 ALRIGPIELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHP 71 AL IG EL+SPV+LAPMAGVTNVAFR+LCR+ E + GTVSGLYVCEMVTARAL+ER+ Sbjct 21 ALTIGNFELSSPVILAPMAGVTNVAFRSLCREQEVHRTGTVSGLYVCEMVTARALVERNE 80 Query 72 VTMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGG 131 TM MTTF+ DE PRSLQLYTVDP+ TY AA+MI E LADHIDMNFGCPVPK+T+RGGG Sbjct 81 KTMKMTTFAPDEDPRSLQLYTVDPEYTYKAAKMIVDENLADHIDMNFGCPVPKITRRGGG 140 Query 132 AALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVAL 191 +ALP+KRRLFG IVAAAV+ATEGTDIPVTVKFR+GIDD +HTHLDAGRIA EGAAAVAL Sbjct 141 SALPYKRRLFGNIVAAAVKATEGTDIPVTVKFRVGIDDENHTHLDAGRIAVEEGAAAVAL 200 Query 192 HARTAAQRYSGTADWEQIARLKQHV--RTIPVLGNGDIYDAGDALAMMSTTGCDGVVIGR 249 HARTAAQRYSG ADW +I RLK+H+ +P+LGNGDI+ A DA MM TGCDGVV+GR Sbjct 201 HARTAAQRYSGEADWNEIKRLKEHLAHTDVPILGNGDIFKATDAHRMMEETGCDGVVVGR 260 Query 250 GCLGRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAW 309 GCLGRPWLFAELSA G P PTLGEV II RH L+A + GE RDIRKHI W Sbjct 261 GCLGRPWLFAELSAQLRGEEIPAEPTLGEVTQIIIRHAELMAHYDGEAHASRDIRKHIGW 320 Query 310 YLHGFPAGSALRRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSPARVALPDGW 369 YL GFP G +R ALA V++ +L LL + + A G RGRQGSP +V LP+GW Sbjct 321 YLRGFPVGGGIRSALARVESLQQLRELLAPWADSPALAEDADGPRGRQGSPGKVVLPEGW 380 Query 370 LTDPDDCRVPEGADAMGSGG 389 L DP+D VPEGA+ M SGG Sbjct 381 LDDPEDESVPEGAELMHSGG 400 Lambda K H 0.321 0.137 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 761978896400 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40