BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0829

Length=96
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|50953768|ref|YP_061207.1|  truncated IS1605 transposase [Mycob...   196    9e-49
gi|15607969|ref|NP_215344.1|  hypothetical protein Rv0829 [Mycoba...   195    2e-48
gi|308231648|ref|ZP_07413289.2|  transposase [Mycobacterium tuber...   194    4e-48
gi|31792017|ref|NP_854510.1|  transposase [Mycobacterium bovis AF...   193    6e-48
gi|167969513|ref|ZP_02551790.1|  transposase [Mycobacterium tuber...   193    7e-48
gi|15610022|ref|NP_217401.1|  transposase [Mycobacterium tubercul...   193    8e-48
gi|308373566|ref|ZP_07432874.2|  transposase [Mycobacterium tuber...   193    8e-48
gi|289553326|ref|ZP_06442536.1|  transposase [Mycobacterium tuber...   193    9e-48
gi|340625844|ref|YP_004744296.1|  putative transposase (fragment)...   191    3e-47
gi|306798812|ref|ZP_07437114.1|  transposase [Mycobacterium tuber...   189    2e-46
gi|308374108|ref|ZP_07434900.2|  transposase [Mycobacterium tuber...   186    1e-45
gi|308374721|ref|ZP_07437115.2|  transposase [Mycobacterium tuber...   172    1e-41
gi|167967517|ref|ZP_02549794.1|  transposase [Mycobacterium tuber...   167    4e-40
gi|298524317|ref|ZP_07011726.1|  conserved hypothetical protein [...   166    2e-39
gi|340628796|ref|YP_004747248.1|  putative transposase [Mycobacte...   161    3e-38
gi|340627967|ref|YP_004746419.1|  putative transposase [Mycobacte...   157    4e-37
gi|339299426|gb|AEJ51536.1|  transposase [Mycobacterium tuberculo...   157    4e-37
gi|15610115|ref|NP_217494.1|  transposase [Mycobacterium tubercul...   157    4e-37
gi|289575685|ref|ZP_06455912.1|  transposase [Mycobacterium tuber...   155    2e-36
gi|339632984|ref|YP_004724626.1|  transposase [Mycobacterium afri...   155    2e-36
gi|339295723|gb|AEJ47834.1|  hypothetical protein CCDC5079_2644 [...   154    5e-36
gi|289759006|ref|ZP_06518384.1|  conserved hypothetical protein [...   153    6e-36
gi|340628251|ref|YP_004746703.1|  IS1539 transposase [Mycobacteri...   153    9e-36
gi|289444440|ref|ZP_06434184.1|  transposase [Mycobacterium tuber...   151    3e-35
gi|31794061|ref|NP_856554.1|  putative transposase [Mycobacterium...   151    4e-35
gi|15609928|ref|NP_217307.1|  transposase [Mycobacterium tubercul...   147    4e-34
gi|148823979|ref|YP_001288733.1|  transposase [Mycobacterium tube...   147    4e-34
gi|289448449|ref|ZP_06438193.1|  transposase [Mycobacterium tuber...   147    4e-34
gi|15842329|ref|NP_337366.1|  IS1602 transposase [Mycobacterium t...   147    4e-34
gi|289751448|ref|ZP_06510826.1|  transposase [Mycobacterium tuber...   147    4e-34
gi|289746594|ref|ZP_06505972.1|  transposase [Mycobacterium tuber...   147    4e-34
gi|339295639|gb|AEJ47750.1|  transposase [Mycobacterium tuberculo...   147    5e-34
gi|340625715|ref|YP_004744167.1|  putative transposase [Mycobacte...   144    3e-33
gi|306796599|ref|ZP_07434901.1|  hypothetical protein TMFG_03995 ...   142    1e-32
gi|306781078|ref|ZP_07419415.1|  hypothetical protein TMBG_03028 ...   137    4e-31
gi|340625125|ref|YP_004743577.1|  putative transposase [Mycobacte...   128    4e-28
gi|289749344|ref|ZP_06508722.1|  transposase [Mycobacterium tuber...   117    8e-25
gi|294994021|ref|ZP_06799712.1|  transposase [Mycobacterium tuber...  62.8    1e-08
gi|332709474|ref|ZP_08429435.1|  transposase, IS605 OrfB family, ...  52.4    2e-05
gi|332707261|ref|ZP_08427314.1|  transposase, IS605 OrfB family, ...  50.4    8e-05
gi|300868826|ref|ZP_07113433.1|  Putative transposase [Oscillator...  50.1    1e-04
gi|300867822|ref|ZP_07112464.1|  transposase [Oscillatoria sp. PC...  50.1    1e-04
gi|307151388|ref|YP_003886772.1|  IS605 OrfB family transposase [...  49.3    2e-04
gi|310657384|ref|YP_003935105.1|  transposase [Clostridium stickl...  48.9    3e-04
gi|298675419|ref|YP_003727169.1|  IS605 OrfB family transposase [...  48.5    3e-04
gi|298675559|ref|YP_003727309.1|  IS605 OrfB family transposase [...  48.5    3e-04
gi|298675093|ref|YP_003726843.1|  IS605 OrfB family transposase [...  48.5    3e-04
gi|307152443|ref|YP_003887827.1|  IS605 OrfB family transposase [...  47.8    5e-04
gi|157364261|ref|YP_001471028.1|  IS605 family transposase OrfB [...  47.8    6e-04
gi|73670687|ref|YP_306702.1|  transposase [Methanosarcina barkeri...  47.8    6e-04


>gi|50953768|ref|YP_061207.1| truncated IS1605 transposase [Mycobacterium tuberculosis CDC1551]
 gi|254231140|ref|ZP_04924467.1| hypothetical protein TBCG_00819 [Mycobacterium tuberculosis C]
 gi|254549801|ref|ZP_05140248.1| truncated IS1605 transposase [Mycobacterium tuberculosis '98-R604 
INH-RIF-EM']
 gi|297633341|ref|ZP_06951121.1| truncated IS1605 transposase [Mycobacterium tuberculosis KZN 
4207]
 gi|313657650|ref|ZP_07814530.1| truncated IS1605 transposase [Mycobacterium tuberculosis KZN 
V2475]
 gi|50952457|gb|AAT90141.1| IS1605', transposase, truncation [Mycobacterium tuberculosis 
CDC1551]
 gi|124600199|gb|EAY59209.1| hypothetical protein TBCG_00819 [Mycobacterium tuberculosis C]
Length=131

 Score =  196 bits (498),  Expect = 9e-49, Method: Compositional matrix adjust.
 Identities = 95/96 (99%), Positives = 95/96 (99%), Gaps = 0/96 (0%)

Query  1    LGPSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVK  60
            LGPSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVK
Sbjct  36   LGPSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVK  95

Query  61   RGADRKTGPGPAGGREARKATGHPAGEQPRDGVLVA  96
            RGADRKTGPGPAGGREARK TGHPAGEQPRDGVLVA
Sbjct  96   RGADRKTGPGPAGGREARKGTGHPAGEQPRDGVLVA  131


>gi|15607969|ref|NP_215344.1| hypothetical protein Rv0829 [Mycobacterium tuberculosis H37Rv]
 gi|307083348|ref|ZP_07492461.1| transposase [Mycobacterium tuberculosis SUMu012]
 gi|2916887|emb|CAA17635.1| POSSIBLE TRANSPOSASE (FRAGMENT) [Mycobacterium tuberculosis H37Rv]
 gi|308366960|gb|EFP55811.1| transposase [Mycobacterium tuberculosis SUMu012]
Length=96

 Score =  195 bits (496),  Expect = 2e-48, Method: Compositional matrix adjust.
 Identities = 95/96 (99%), Positives = 96/96 (100%), Gaps = 0/96 (0%)

Query  1   LGPSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVK  60
           +GPSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVK
Sbjct  1   MGPSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVK  60

Query  61  RGADRKTGPGPAGGREARKATGHPAGEQPRDGVLVA  96
           RGADRKTGPGPAGGREARKATGHPAGEQPRDGVLVA
Sbjct  61  RGADRKTGPGPAGGREARKATGHPAGEQPRDGVLVA  96


>gi|308231648|ref|ZP_07413289.2| transposase [Mycobacterium tuberculosis SUMu001]
 gi|308371771|ref|ZP_07426181.2| transposase [Mycobacterium tuberculosis SUMu004]
 gi|308373642|ref|ZP_07433152.2| transposase [Mycobacterium tuberculosis SUMu005]
 9 more sequence titles
 Length=103

 Score =  194 bits (493),  Expect = 4e-48, Method: Compositional matrix adjust.
 Identities = 95/96 (99%), Positives = 95/96 (99%), Gaps = 0/96 (0%)

Query  1    LGPSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVK  60
            LGPSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVK
Sbjct  8    LGPSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVK  67

Query  61   RGADRKTGPGPAGGREARKATGHPAGEQPRDGVLVA  96
            RGADRKTGPGPAGGREARK TGHPAGEQPRDGVLVA
Sbjct  68   RGADRKTGPGPAGGREARKGTGHPAGEQPRDGVLVA  103


>gi|31792017|ref|NP_854510.1| transposase [Mycobacterium bovis AF2122/97]
 gi|121636753|ref|YP_976976.1| putative transposase [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148822034|ref|YP_001286789.1| transposase [Mycobacterium tuberculosis F11]
 45 more sequence titles
 Length=96

 Score =  193 bits (491),  Expect = 6e-48, Method: Compositional matrix adjust.
 Identities = 94/96 (98%), Positives = 95/96 (99%), Gaps = 0/96 (0%)

Query  1   LGPSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVK  60
           +GPSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVK
Sbjct  1   MGPSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVK  60

Query  61  RGADRKTGPGPAGGREARKATGHPAGEQPRDGVLVA  96
           RGADRKTGPGPAGGREARK TGHPAGEQPRDGVLVA
Sbjct  61  RGADRKTGPGPAGGREARKGTGHPAGEQPRDGVLVA  96


>gi|167969513|ref|ZP_02551790.1| transposase [Mycobacterium tuberculosis H37Ra]
 gi|254551956|ref|ZP_05142403.1| transposase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
Length=448

 Score =  193 bits (491),  Expect = 7e-48, Method: Compositional matrix adjust.
 Identities = 92/93 (99%), Positives = 92/93 (99%), Gaps = 0/93 (0%)

Query  3    PSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRG  62
            PSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRG
Sbjct  355  PSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRG  414

Query  63   ADRKTGPGPAGGREARKATGHPAGEQPRDGVLV  95
            ADRKTGPGPAGGREARKATGHPAGEQPRDGV V
Sbjct  415  ADRKTGPGPAGGREARKATGHPAGEQPRDGVQV  447


>gi|15610022|ref|NP_217401.1| transposase [Mycobacterium tuberculosis H37Rv]
 gi|15842427|ref|NP_337464.1| IS1539 transposase [Mycobacterium tuberculosis CDC1551]
 gi|148662729|ref|YP_001284252.1| IS1539 transposase [Mycobacterium tuberculosis H37Ra]
 33 more sequence titles
 Length=460

 Score =  193 bits (490),  Expect = 8e-48, Method: Compositional matrix adjust.
 Identities = 92/93 (99%), Positives = 92/93 (99%), Gaps = 0/93 (0%)

Query  3    PSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRG  62
            PSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRG
Sbjct  367  PSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRG  426

Query  63   ADRKTGPGPAGGREARKATGHPAGEQPRDGVLV  95
            ADRKTGPGPAGGREARKATGHPAGEQPRDGV V
Sbjct  427  ADRKTGPGPAGGREARKATGHPAGEQPRDGVQV  459


>gi|308373566|ref|ZP_07432874.2| transposase [Mycobacterium tuberculosis SUMu005]
 gi|308337164|gb|EFP26015.1| transposase [Mycobacterium tuberculosis SUMu005]
Length=454

 Score =  193 bits (490),  Expect = 8e-48, Method: Compositional matrix adjust.
 Identities = 92/93 (99%), Positives = 92/93 (99%), Gaps = 0/93 (0%)

Query  3    PSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRG  62
            PSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRG
Sbjct  361  PSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRG  420

Query  63   ADRKTGPGPAGGREARKATGHPAGEQPRDGVLV  95
            ADRKTGPGPAGGREARKATGHPAGEQPRDGV V
Sbjct  421  ADRKTGPGPAGGREARKATGHPAGEQPRDGVQV  453


>gi|289553326|ref|ZP_06442536.1| transposase [Mycobacterium tuberculosis KZN 605]
 gi|297635502|ref|ZP_06953282.1| transposase [Mycobacterium tuberculosis KZN 4207]
 gi|297732501|ref|ZP_06961619.1| transposase [Mycobacterium tuberculosis KZN R506]
 6 more sequence titles
 Length=459

 Score =  193 bits (490),  Expect = 9e-48, Method: Compositional matrix adjust.
 Identities = 92/93 (99%), Positives = 92/93 (99%), Gaps = 0/93 (0%)

Query  3    PSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRG  62
            PSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRG
Sbjct  366  PSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRG  425

Query  63   ADRKTGPGPAGGREARKATGHPAGEQPRDGVLV  95
            ADRKTGPGPAGGREARKATGHPAGEQPRDGV V
Sbjct  426  ADRKTGPGPAGGREARKATGHPAGEQPRDGVQV  458


>gi|340625844|ref|YP_004744296.1| putative transposase (fragment) [Mycobacterium canettii CIPT 
140010059]
 gi|340004034|emb|CCC43170.1| putative transposase (fragment) [Mycobacterium canettii CIPT 
140010059]
Length=96

 Score =  191 bits (485),  Expect = 3e-47, Method: Compositional matrix adjust.
 Identities = 93/96 (97%), Positives = 94/96 (98%), Gaps = 0/96 (0%)

Query  1   LGPSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVK  60
           +GPSSKTC ACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVK
Sbjct  1   MGPSSKTCQACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVK  60

Query  61  RGADRKTGPGPAGGREARKATGHPAGEQPRDGVLVA  96
           RGADRKTGPGPAGGREARK TGHPAGEQPRDGVLVA
Sbjct  61  RGADRKTGPGPAGGREARKGTGHPAGEQPRDGVLVA  96


>gi|306798812|ref|ZP_07437114.1| transposase [Mycobacterium tuberculosis SUMu006]
 gi|308340974|gb|EFP29825.1| transposase [Mycobacterium tuberculosis SUMu006]
Length=123

 Score =  189 bits (479),  Expect = 2e-46, Method: Compositional matrix adjust.
 Identities = 92/93 (99%), Positives = 92/93 (99%), Gaps = 0/93 (0%)

Query  3    PSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRG  62
            PSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRG
Sbjct  30   PSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRG  89

Query  63   ADRKTGPGPAGGREARKATGHPAGEQPRDGVLV  95
            ADRKTGPGPAGGREARKATGHPAGEQPRDGV V
Sbjct  90   ADRKTGPGPAGGREARKATGHPAGEQPRDGVQV  122


>gi|308374108|ref|ZP_07434900.2| transposase [Mycobacterium tuberculosis SUMu006]
 gi|308342991|gb|EFP31842.1| transposase [Mycobacterium tuberculosis SUMu006]
Length=92

 Score =  186 bits (472),  Expect = 1e-45, Method: Compositional matrix adjust.
 Identities = 90/92 (98%), Positives = 91/92 (99%), Gaps = 0/92 (0%)

Query  1   LGPSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVK  60
           +GPSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVK
Sbjct  1   MGPSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVK  60

Query  61  RGADRKTGPGPAGGREARKATGHPAGEQPRDG  92
           RGADRKTGPGPAGGREARK TGHPAGEQPRDG
Sbjct  61  RGADRKTGPGPAGGREARKGTGHPAGEQPRDG  92


>gi|308374721|ref|ZP_07437115.2| transposase [Mycobacterium tuberculosis SUMu006]
 gi|308340931|gb|EFP29782.1| transposase [Mycobacterium tuberculosis SUMu006]
Length=446

 Score =  172 bits (436),  Expect = 1e-41, Method: Compositional matrix adjust.
 Identities = 81/81 (100%), Positives = 81/81 (100%), Gaps = 0/81 (0%)

Query  3    PSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRG  62
            PSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRG
Sbjct  366  PSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRG  425

Query  63   ADRKTGPGPAGGREARKATGH  83
            ADRKTGPGPAGGREARKATGH
Sbjct  426  ADRKTGPGPAGGREARKATGH  446


>gi|167967517|ref|ZP_02549794.1| transposase [Mycobacterium tuberculosis H37Ra]
Length=83

 Score =  167 bits (423),  Expect = 4e-40, Method: Compositional matrix adjust.
 Identities = 82/83 (99%), Positives = 83/83 (100%), Gaps = 0/83 (0%)

Query  14  VQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRGADRKTGPGPAG  73
           +QDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRGADRKTGPGPAG
Sbjct  1   MQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRGADRKTGPGPAG  60

Query  74  GREARKATGHPAGEQPRDGVLVA  96
           GREARKATGHPAGEQPRDGVLVA
Sbjct  61  GREARKATGHPAGEQPRDGVLVA  83


>gi|298524317|ref|ZP_07011726.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|298494111|gb|EFI29405.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|323720753|gb|EGB29825.1| transposase [Mycobacterium tuberculosis CDC1551A]
Length=83

 Score =  166 bits (419),  Expect = 2e-39, Method: Compositional matrix adjust.
 Identities = 81/83 (98%), Positives = 82/83 (99%), Gaps = 0/83 (0%)

Query  14  VQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRGADRKTGPGPAG  73
           +QDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRGADRKTGPGPAG
Sbjct  1   MQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRGADRKTGPGPAG  60

Query  74  GREARKATGHPAGEQPRDGVLVA  96
           GREARK TGHPAGEQPRDGVLVA
Sbjct  61  GREARKGTGHPAGEQPRDGVLVA  83


>gi|340628796|ref|YP_004747248.1| putative transposase [Mycobacterium canettii CIPT 140010059]
 gi|340006986|emb|CCC46177.1| putative transposase [Mycobacterium canettii CIPT 140010059]
Length=459

 Score =  161 bits (408),  Expect = 3e-38, Method: Compositional matrix adjust.
 Identities = 79/94 (85%), Positives = 81/94 (87%), Gaps = 0/94 (0%)

Query  3    PSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRG  62
            PSSKTCH C HVQDIGWDE WQCDGCS+THQRDDNAA+NLARYEEP SVVGPVGAAVKRG
Sbjct  366  PSSKTCHTCGHVQDIGWDETWQCDGCSVTHQRDDNAAVNLARYEEPVSVVGPVGAAVKRG  425

Query  63   ADRKTGPGPAGGREARKATGHPAGEQPRDGVLVA  96
            ADRKTGP PAGG EARK     A EQPRDGV VA
Sbjct  426  ADRKTGPCPAGGCEARKGGSRMAAEQPRDGVQVA  459


>gi|340627967|ref|YP_004746419.1| putative transposase [Mycobacterium canettii CIPT 140010059]
 gi|340006157|emb|CCC45331.1| putative transposase [Mycobacterium canettii CIPT 140010059]
Length=459

 Score =  157 bits (398),  Expect = 4e-37, Method: Compositional matrix adjust.
 Identities = 77/94 (82%), Positives = 81/94 (87%), Gaps = 0/94 (0%)

Query  3    PSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRG  62
            PSSKTCHACRHVQDIGWDE+WQCD CS+ HQRDD AAINLARYEE  S+VGPVGAAVKRG
Sbjct  366  PSSKTCHACRHVQDIGWDEQWQCDRCSVVHQRDDCAAINLARYEETSSIVGPVGAAVKRG  425

Query  63   ADRKTGPGPAGGREARKATGHPAGEQPRDGVLVA  96
            ADRKTGP PAGG EARK +   A EQPRDGV VA
Sbjct  426  ADRKTGPRPAGGCEARKGSSPKAAEQPRDGVQVA  459


>gi|339299426|gb|AEJ51536.1| transposase [Mycobacterium tuberculosis CCDC5180]
Length=459

 Score =  157 bits (398),  Expect = 4e-37, Method: Compositional matrix adjust.
 Identities = 77/94 (82%), Positives = 81/94 (87%), Gaps = 0/94 (0%)

Query  3    PSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRG  62
            PSSKTCHACRHVQDIGWDE+WQCD CS+ HQRDD AAINLARYEE  S+VGPVGAAVKRG
Sbjct  366  PSSKTCHACRHVQDIGWDEQWQCDRCSVVHQRDDCAAINLARYEETSSIVGPVGAAVKRG  425

Query  63   ADRKTGPGPAGGREARKATGHPAGEQPRDGVLVA  96
            ADRKTGP PAGG EARK +   A EQPRDGV VA
Sbjct  426  ADRKTGPRPAGGCEARKGSSPKAAEQPRDGVQVA  459


>gi|15610115|ref|NP_217494.1| transposase [Mycobacterium tuberculosis H37Rv]
 gi|15842532|ref|NP_337569.1| IS1538 transposase [Mycobacterium tuberculosis CDC1551]
 gi|31794154|ref|NP_856647.1| resolvase [Mycobacterium bovis AF2122/97]
 70 more sequence titles
 Length=459

 Score =  157 bits (398),  Expect = 4e-37, Method: Compositional matrix adjust.
 Identities = 77/94 (82%), Positives = 81/94 (87%), Gaps = 0/94 (0%)

Query  3    PSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRG  62
            PSSKTCHACRHVQDIGWDE+WQCD CS+ HQRDD AAINLARYEE  S+VGPVGAAVKRG
Sbjct  366  PSSKTCHACRHVQDIGWDEQWQCDRCSVVHQRDDCAAINLARYEETSSIVGPVGAAVKRG  425

Query  63   ADRKTGPGPAGGREARKATGHPAGEQPRDGVLVA  96
            ADRKTGP PAGG EARK +   A EQPRDGV VA
Sbjct  426  ADRKTGPRPAGGCEARKGSSPKAAEQPRDGVQVA  459


>gi|289575685|ref|ZP_06455912.1| transposase [Mycobacterium tuberculosis K85]
 gi|289540116|gb|EFD44694.1| transposase [Mycobacterium tuberculosis K85]
Length=459

 Score =  155 bits (392),  Expect = 2e-36, Method: Compositional matrix adjust.
 Identities = 76/94 (81%), Positives = 80/94 (86%), Gaps = 0/94 (0%)

Query  3    PSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRG  62
            PSSKTCHACRHVQDIGWDE+WQCD CS+ HQRDD AAINLARYEE  S+VGPVGAAVKRG
Sbjct  366  PSSKTCHACRHVQDIGWDEQWQCDRCSVVHQRDDCAAINLARYEETSSIVGPVGAAVKRG  425

Query  63   ADRKTGPGPAGGREARKATGHPAGEQPRDGVLVA  96
            ADRKTGP PAGG EARK +   A EQP DGV VA
Sbjct  426  ADRKTGPRPAGGCEARKGSSPKAAEQPLDGVQVA  459


>gi|339632984|ref|YP_004724626.1| transposase [Mycobacterium africanum GM041182]
 gi|339332340|emb|CCC28053.1| putative transposase [Mycobacterium africanum GM041182]
Length=459

 Score =  155 bits (391),  Expect = 2e-36, Method: Compositional matrix adjust.
 Identities = 76/94 (81%), Positives = 80/94 (86%), Gaps = 0/94 (0%)

Query  3    PSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRG  62
            PSSKTCHACRHVQDIGWDE+WQCD CS+ HQRDD AAINLARYEE  S+VGPVGAAVKRG
Sbjct  366  PSSKTCHACRHVQDIGWDEQWQCDRCSVVHQRDDCAAINLARYEETSSIVGPVGAAVKRG  425

Query  63   ADRKTGPGPAGGREARKATGHPAGEQPRDGVLVA  96
            ADRKTGP PAGG EARK +   A EQP DGV VA
Sbjct  426  ADRKTGPRPAGGCEARKGSSPKAAEQPLDGVQVA  459


>gi|339295723|gb|AEJ47834.1| hypothetical protein CCDC5079_2644 [Mycobacterium tuberculosis 
CCDC5079]
 gi|339299339|gb|AEJ51449.1| hypothetical protein CCDC5180_2612 [Mycobacterium tuberculosis 
CCDC5180]
Length=427

 Score =  154 bits (389),  Expect = 5e-36, Method: Compositional matrix adjust.
 Identities = 71/71 (100%), Positives = 71/71 (100%), Gaps = 0/71 (0%)

Query  3    PSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRG  62
            PSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRG
Sbjct  355  PSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRG  414

Query  63   ADRKTGPGPAG  73
            ADRKTGPGPAG
Sbjct  415  ADRKTGPGPAG  425


>gi|289759006|ref|ZP_06518384.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298526354|ref|ZP_07013763.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|289714570|gb|EFD78582.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298496148|gb|EFI31442.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
Length=439

 Score =  153 bits (387),  Expect = 6e-36, Method: Compositional matrix adjust.
 Identities = 71/71 (100%), Positives = 71/71 (100%), Gaps = 0/71 (0%)

Query  3    PSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRG  62
            PSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRG
Sbjct  367  PSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRG  426

Query  63   ADRKTGPGPAG  73
            ADRKTGPGPAG
Sbjct  427  ADRKTGPGPAG  437


>gi|340628251|ref|YP_004746703.1| IS1539 transposase [Mycobacterium canettii CIPT 140010059]
 gi|340006441|emb|CCC45623.1| IS1539 transposase [Mycobacterium canettii CIPT 140010059]
Length=184

 Score =  153 bits (386),  Expect = 9e-36, Method: Compositional matrix adjust.
 Identities = 80/98 (82%), Positives = 81/98 (83%), Gaps = 4/98 (4%)

Query  3    PSSKTCHACRHVQDIGWDEKWQCD----GCSITHQRDDNAAINLARYEEPPSVVGPVGAA  58
            PSSKTCH C HVQDIGWDEKW CD    GC +THQRDD AAINLARYEEP SVVGPVGAA
Sbjct  87   PSSKTCHGCGHVQDIGWDEKWICDPTDGGCGVTHQRDDCAAINLARYEEPVSVVGPVGAA  146

Query  59   VKRGADRKTGPGPAGGREARKATGHPAGEQPRDGVLVA  96
            VKR AD KT PG  GG EARKATGHPAGEQPRDGV VA
Sbjct  147  VKRAADPKTRPGRTGGDEARKATGHPAGEQPRDGVRVA  184


>gi|289444440|ref|ZP_06434184.1| transposase [Mycobacterium tuberculosis T46]
 gi|289571075|ref|ZP_06451302.1| transposase [Mycobacterium tuberculosis T17]
 gi|289751550|ref|ZP_06510928.1| transposase [Mycobacterium tuberculosis T92]
 gi|289417359|gb|EFD14599.1| transposase [Mycobacterium tuberculosis T46]
 gi|289544829|gb|EFD48477.1| transposase [Mycobacterium tuberculosis T17]
 gi|289692137|gb|EFD59566.1| transposase [Mycobacterium tuberculosis T92]
Length=439

 Score =  151 bits (382),  Expect = 3e-35, Method: Compositional matrix adjust.
 Identities = 70/71 (99%), Positives = 70/71 (99%), Gaps = 0/71 (0%)

Query  3    PSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRG  62
            PSSKTCHACRHVQDIGWDE WQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRG
Sbjct  367  PSSKTCHACRHVQDIGWDEIWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRG  426

Query  63   ADRKTGPGPAG  73
            ADRKTGPGPAG
Sbjct  427  ADRKTGPGPAG  437


>gi|31794061|ref|NP_856554.1| putative transposase [Mycobacterium bovis AF2122/97]
 gi|121638766|ref|YP_978990.1| putative transposase [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224991258|ref|YP_002645947.1| putative transposase [Mycobacterium bovis BCG str. Tokyo 172]
 10 more sequence titles
 Length=439

 Score =  151 bits (381),  Expect = 4e-35, Method: Compositional matrix adjust.
 Identities = 70/71 (99%), Positives = 70/71 (99%), Gaps = 0/71 (0%)

Query  3    PSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRG  62
            PSSKTCHACRHVQDIGWDE WQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRG
Sbjct  367  PSSKTCHACRHVQDIGWDEIWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRG  426

Query  63   ADRKTGPGPAG  73
            ADRKTGPGPAG
Sbjct  427  ADRKTGPGPAG  437


>gi|15609928|ref|NP_217307.1| transposase [Mycobacterium tuberculosis H37Rv]
 gi|31793967|ref|NP_856460.1| transposase [Mycobacterium bovis AF2122/97]
 gi|121638671|ref|YP_978895.1| putative transposase [Mycobacterium bovis BCG str. Pasteur 1173P2]
 53 more sequence titles
 Length=459

 Score =  147 bits (372),  Expect = 4e-34, Method: Compositional matrix adjust.
 Identities = 73/94 (78%), Positives = 77/94 (82%), Gaps = 0/94 (0%)

Query  3    PSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRG  62
            PSSKTCH C HVQ+IGW E WQCD CS +HQRDD AAINLARYE+  SVVGPVGAAVKRG
Sbjct  366  PSSKTCHVCGHVQEIGWAEHWQCDSCSASHQRDDCAAINLARYEDTSSVVGPVGAAVKRG  425

Query  63   ADRKTGPGPAGGREARKATGHPAGEQPRDGVLVA  96
            ADRKT PG AGGREARK +   A EQPRDGV VA
Sbjct  426  ADRKTRPGRAGGREARKGSSRKAAEQPRDGVQVA  459


>gi|148823979|ref|YP_001288733.1| transposase [Mycobacterium tuberculosis F11]
 gi|253798125|ref|YP_003031126.1| transposase [Mycobacterium tuberculosis KZN 1435]
 gi|289553422|ref|ZP_06442632.1| transposase [Mycobacterium tuberculosis KZN 605]
 10 more sequence titles
 Length=459

 Score =  147 bits (372),  Expect = 4e-34, Method: Compositional matrix adjust.
 Identities = 73/94 (78%), Positives = 77/94 (82%), Gaps = 0/94 (0%)

Query  3    PSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRG  62
            PSSKTCH C HVQ+IGW E WQCD CS +HQRDD AAINLARYE+  SVVGPVGAAVKRG
Sbjct  366  PSSKTCHVCGHVQEIGWAEHWQCDSCSASHQRDDCAAINLARYEDTSSVVGPVGAAVKRG  425

Query  63   ADRKTGPGPAGGREARKATGHPAGEQPRDGVLVA  96
            ADRKT PG AGGREARK +   A EQPRDGV VA
Sbjct  426  ADRKTRPGRAGGREARKGSSRKAAEQPRDGVQVA  459


>gi|289448449|ref|ZP_06438193.1| transposase [Mycobacterium tuberculosis CPHL_A]
 gi|289421407|gb|EFD18608.1| transposase [Mycobacterium tuberculosis CPHL_A]
Length=459

 Score =  147 bits (372),  Expect = 4e-34, Method: Compositional matrix adjust.
 Identities = 73/94 (78%), Positives = 77/94 (82%), Gaps = 0/94 (0%)

Query  3    PSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRG  62
            PSSKTCH C HVQ+IGW E WQCD CS +HQRDD AAINLARYE+  SVVGPVGAAVKRG
Sbjct  366  PSSKTCHVCGHVQEIGWAEHWQCDSCSASHQRDDCAAINLARYEDTSSVVGPVGAAVKRG  425

Query  63   ADRKTGPGPAGGREARKATGHPAGEQPRDGVLVA  96
            ADRKT PG AGGREARK +   A EQPRDGV VA
Sbjct  426  ADRKTRPGRAGGREARKGSSRKAAEQPRDGVQVA  459


>gi|15842329|ref|NP_337366.1| IS1602 transposase [Mycobacterium tuberculosis CDC1551]
 gi|13882625|gb|AAK47180.1| IS1602, transposase [Mycobacterium tuberculosis CDC1551]
Length=459

 Score =  147 bits (372),  Expect = 4e-34, Method: Compositional matrix adjust.
 Identities = 73/94 (78%), Positives = 77/94 (82%), Gaps = 0/94 (0%)

Query  3    PSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRG  62
            PSSKTCH C HVQ+IGW E WQCD CS +HQRDD AAINLARYE+  SVVGPVGAAVKRG
Sbjct  366  PSSKTCHVCGHVQEIGWAEHWQCDSCSASHQRDDCAAINLARYEDTSSVVGPVGAAVKRG  425

Query  63   ADRKTGPGPAGGREARKATGHPAGEQPRDGVLVA  96
            ADRKT PG AGGREARK +   A EQPRDGV VA
Sbjct  426  ADRKTRPGRAGGREARKGSSRKAAEQPRDGVQVA  459


>gi|289751448|ref|ZP_06510826.1| transposase [Mycobacterium tuberculosis T92]
 gi|289692035|gb|EFD59464.1| transposase [Mycobacterium tuberculosis T92]
Length=324

 Score =  147 bits (372),  Expect = 4e-34, Method: Compositional matrix adjust.
 Identities = 73/94 (78%), Positives = 77/94 (82%), Gaps = 0/94 (0%)

Query  3    PSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRG  62
            PSSKTCH C HVQ+IGW E WQCD CS +HQRDD AAINLARYE+  SVVGPVGAAVKRG
Sbjct  231  PSSKTCHVCGHVQEIGWAEHWQCDSCSASHQRDDCAAINLARYEDTSSVVGPVGAAVKRG  290

Query  63   ADRKTGPGPAGGREARKATGHPAGEQPRDGVLVA  96
            ADRKT PG AGGREARK +   A EQPRDGV VA
Sbjct  291  ADRKTRPGRAGGREARKGSSRKAAEQPRDGVQVA  324


>gi|289746594|ref|ZP_06505972.1| transposase [Mycobacterium tuberculosis 02_1987]
 gi|289687122|gb|EFD54610.1| transposase [Mycobacterium tuberculosis 02_1987]
Length=459

 Score =  147 bits (372),  Expect = 4e-34, Method: Compositional matrix adjust.
 Identities = 73/94 (78%), Positives = 77/94 (82%), Gaps = 0/94 (0%)

Query  3    PSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRG  62
            PSSKTCH C HVQ+IGW E WQCD CS +HQRDD AAINLARYE+  SVVGPVGAAVKRG
Sbjct  366  PSSKTCHVCGHVQEIGWAEHWQCDSCSASHQRDDCAAINLARYEDTSSVVGPVGAAVKRG  425

Query  63   ADRKTGPGPAGGREARKATGHPAGEQPRDGVLVA  96
            ADRKT PG AGGREARK +   A EQPRDGV VA
Sbjct  426  ADRKTRPGRAGGREARKGSSRKAAEQPRDGVQVA  459


>gi|339295639|gb|AEJ47750.1| transposase [Mycobacterium tuberculosis CCDC5079]
Length=158

 Score =  147 bits (371),  Expect = 5e-34, Method: Compositional matrix adjust.
 Identities = 73/94 (78%), Positives = 77/94 (82%), Gaps = 0/94 (0%)

Query  3    PSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRG  62
            PSSKTCH C HVQ+IGW E WQCD CS +HQRDD AAINLARYE+  SVVGPVGAAVKRG
Sbjct  65   PSSKTCHVCGHVQEIGWAEHWQCDSCSASHQRDDCAAINLARYEDTSSVVGPVGAAVKRG  124

Query  63   ADRKTGPGPAGGREARKATGHPAGEQPRDGVLVA  96
            ADRKT PG AGGREARK +   A EQPRDGV VA
Sbjct  125  ADRKTRPGRAGGREARKGSSRKAAEQPRDGVQVA  158


>gi|340625715|ref|YP_004744167.1| putative transposase [Mycobacterium canettii CIPT 140010059]
 gi|340003905|emb|CCC43037.1| putative transposase [Mycobacterium canettii CIPT 140010059]
Length=459

 Score =  144 bits (364),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 72/94 (77%), Positives = 76/94 (81%), Gaps = 0/94 (0%)

Query  3    PSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRG  62
            PSSKTCH C HVQ+IGW E WQCD CS +HQRDD AAINLARYE+  SVVG VGAAVKRG
Sbjct  366  PSSKTCHVCGHVQEIGWAEHWQCDSCSASHQRDDCAAINLARYEDTSSVVGLVGAAVKRG  425

Query  63   ADRKTGPGPAGGREARKATGHPAGEQPRDGVLVA  96
            ADRKT PG AGGREARK +   A EQPRDGV VA
Sbjct  426  ADRKTRPGRAGGREARKGSSRKAAEQPRDGVQVA  459


>gi|306796599|ref|ZP_07434901.1| hypothetical protein TMFG_03995 [Mycobacterium tuberculosis SUMu006]
 gi|308342973|gb|EFP31824.1| hypothetical protein TMFG_03995 [Mycobacterium tuberculosis SUMu006]
Length=72

 Score =  142 bits (359),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 71/72 (99%), Positives = 71/72 (99%), Gaps = 0/72 (0%)

Query  25  CDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRGADRKTGPGPAGGREARKATGHP  84
           CDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRGADRKTGPGPAGGREARK TGHP
Sbjct  1   CDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRGADRKTGPGPAGGREARKGTGHP  60

Query  85  AGEQPRDGVLVA  96
           AGEQPRDGVLVA
Sbjct  61  AGEQPRDGVLVA  72


>gi|306781078|ref|ZP_07419415.1| hypothetical protein TMBG_03028 [Mycobacterium tuberculosis SUMu002]
 gi|308326128|gb|EFP14979.1| hypothetical protein TMBG_03028 [Mycobacterium tuberculosis SUMu002]
Length=71

 Score =  137 bits (346),  Expect = 4e-31, Method: Compositional matrix adjust.
 Identities = 69/70 (99%), Positives = 69/70 (99%), Gaps = 0/70 (0%)

Query  26  DGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRGADRKTGPGPAGGREARKATGHPA  85
           DGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRGADRKTGPGPAGGREARKATGHPA
Sbjct  1   DGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRGADRKTGPGPAGGREARKATGHPA  60

Query  86  GEQPRDGVLV  95
           GEQPRDGV V
Sbjct  61  GEQPRDGVQV  70


>gi|340625125|ref|YP_004743577.1| putative transposase [Mycobacterium canettii CIPT 140010059]
 gi|340003315|emb|CCC42433.1| putative transposase [Mycobacterium canettii CIPT 140010059]
Length=87

 Score =  128 bits (321),  Expect = 4e-28, Method: Compositional matrix adjust.
 Identities = 69/87 (80%), Positives = 72/87 (83%), Gaps = 4/87 (4%)

Query  14  VQDIGWDEKWQCD----GCSITHQRDDNAAINLARYEEPPSVVGPVGAAVKRGADRKTGP  69
           +QDIGWD KW CD    GC +THQRDD AAINLARYEEP SVVGPVGAAVKR AD KT P
Sbjct  1   MQDIGWDGKWICDPTDGGCGVTHQRDDCAAINLARYEEPVSVVGPVGAAVKRAADPKTRP  60

Query  70  GPAGGREARKATGHPAGEQPRDGVLVA  96
           G AGG +ARKATGHPAGEQPRDGV VA
Sbjct  61  GRAGGDQARKATGHPAGEQPRDGVRVA  87


>gi|289749344|ref|ZP_06508722.1| transposase [Mycobacterium tuberculosis T92]
 gi|289689931|gb|EFD57360.1| transposase [Mycobacterium tuberculosis T92]
Length=96

 Score =  117 bits (292),  Expect = 8e-25, Method: Compositional matrix adjust.
 Identities = 64/96 (67%), Positives = 66/96 (69%), Gaps = 0/96 (0%)

Query  1   LGPSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVK  60
           +GPSS                K  CDGCSITHQRDDNAAIN        +   PVGAAVK
Sbjct  1   MGPSSINLSCLPACTRHRLGRKMPCDGCSITHQRDDNAAINSHATRNHLASSAPVGAAVK  60

Query  61  RGADRKTGPGPAGGREARKATGHPAGEQPRDGVLVA  96
           RGADRKTGPGPAGGREARK TGHPAGEQPRDGVLVA
Sbjct  61  RGADRKTGPGPAGGREARKGTGHPAGEQPRDGVLVA  96


>gi|294994021|ref|ZP_06799712.1| transposase [Mycobacterium tuberculosis 210]
Length=386

 Score = 62.8 bits (151),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 25/25 (100%), Positives = 25/25 (100%), Gaps = 0/25 (0%)

Query  3    PSSKTCHACRHVQDIGWDEKWQCDG  27
            PSSKTCHACRHVQDIGWDEKWQCDG
Sbjct  355  PSSKTCHACRHVQDIGWDEKWQCDG  379


>gi|332709474|ref|ZP_08429435.1| transposase, IS605 OrfB family, central region [Lyngbya majuscula 
3L]
 gi|332351733|gb|EGJ31312.1| transposase, IS605 OrfB family, central region [Lyngbya majuscula 
3L]
Length=389

 Score = 52.4 bits (124),  Expect = 2e-05, Method: Composition-based stats.
 Identities = 23/45 (52%), Positives = 29/45 (65%), Gaps = 1/45 (2%)

Query  3    PSSKTCHACRHVQDIGWDEK-WQCDGCSITHQRDDNAAINLARYE  46
            PSSKTCH C H+QD+   E+ + C  C     RD NAAIN+ R+E
Sbjct  329  PSSKTCHKCDHIQDMPLRERVYVCGSCGNIEDRDLNAAINIERWE  373


>gi|332707261|ref|ZP_08427314.1| transposase, IS605 OrfB family, central region [Lyngbya majuscula 
3L]
 gi|332353995|gb|EGJ33482.1| transposase, IS605 OrfB family, central region [Lyngbya majuscula 
3L]
Length=375

 Score = 50.4 bits (119),  Expect = 8e-05, Method: Composition-based stats.
 Identities = 23/45 (52%), Positives = 29/45 (65%), Gaps = 1/45 (2%)

Query  3    PSSKTCHACRHVQDIGWDEK-WQCDGCSITHQRDDNAAINLARYE  46
            PSSKTCH C H Q++   E+ + C GC     RD NAAIN+ R+E
Sbjct  329  PSSKTCHKCGHKQNMPLKERVYICGGCGNLEDRDLNAAINIERWE  373


>gi|300868826|ref|ZP_07113433.1| Putative transposase [Oscillatoria sp. PCC 6506]
 gi|297613670|gb|ADI48263.1| putative transposase [Oscillatoria sp. PCC 6506]
 gi|300333177|emb|CBN58625.1| Putative transposase [Oscillatoria sp. PCC 6506]
Length=404

 Score = 50.1 bits (118),  Expect = 1e-04, Method: Composition-based stats.
 Identities = 24/46 (53%), Positives = 30/46 (66%), Gaps = 1/46 (2%)

Query  3    PSSKTCHACRHVQDIGWDEK-WQCDGCSITHQRDDNAAINLARYEE  47
            PSSKTC  C HVQ +   E+ + C GC++   RD NAAINL+R  E
Sbjct  327  PSSKTCSNCGHVQSMPLKERVFNCGGCNLLINRDLNAAINLSRCSE  372


>gi|300867822|ref|ZP_07112464.1| transposase [Oscillatoria sp. PCC 6506]
 gi|300334153|emb|CBN57636.1| transposase [Oscillatoria sp. PCC 6506]
Length=404

 Score = 50.1 bits (118),  Expect = 1e-04, Method: Composition-based stats.
 Identities = 24/46 (53%), Positives = 30/46 (66%), Gaps = 1/46 (2%)

Query  3    PSSKTCHACRHVQDIGWDEK-WQCDGCSITHQRDDNAAINLARYEE  47
            PSSKTC  C HVQ +   E+ + C GC++   RD NAAINL+R  E
Sbjct  327  PSSKTCSNCGHVQSMPLKERVFNCGGCNLLINRDLNAAINLSRCSE  372


>gi|307151388|ref|YP_003886772.1| IS605 OrfB family transposase [Cyanothece sp. PCC 7822]
 gi|306981616|gb|ADN13497.1| transposase, IS605 OrfB family [Cyanothece sp. PCC 7822]
Length=401

 Score = 49.3 bits (116),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 29/68 (43%), Positives = 34/68 (50%), Gaps = 3/68 (4%)

Query  3    PSSKTCHAC-RHVQDIGWD-EKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVK  60
            PSSKTCH C   V  +  D   W C+ C  TH RD NAAINL R E    +    G    
Sbjct  314  PSSKTCHVCLNQVDSLPLDIRAWTCENCQTTHDRDVNAAINL-RDEGLRILTSGTGGKAY  372

Query  61   RGADRKTG  68
            R   R++G
Sbjct  373  RQTVRRSG  380


>gi|310657384|ref|YP_003935105.1| transposase [Clostridium sticklandii DSM 519]
 gi|308824162|emb|CBH20200.1| transposase [Clostridium sticklandii]
Length=376

 Score = 48.9 bits (115),  Expect = 3e-04, Method: Composition-based stats.
 Identities = 23/46 (50%), Positives = 30/46 (66%), Gaps = 2/46 (4%)

Query  3    PSSKTCHACRHV-QDIGW-DEKWQCDGCSITHQRDDNAAINLARYE  46
            PSSKTC +C  + QD+   D  + CD C +T  RD NA+INLA Y+
Sbjct  329  PSSKTCSSCSGIKQDLKLKDRIYHCDKCGLTMDRDKNASINLANYK  374


>gi|298675419|ref|YP_003727169.1| IS605 OrfB family transposase [Methanohalobium evestigatum Z-7303]
 gi|298288407|gb|ADI74373.1| transposase, IS605 OrfB family [Methanohalobium evestigatum Z-7303]
Length=380

 Score = 48.5 bits (114),  Expect = 3e-04, Method: Composition-based stats.
 Identities = 21/57 (37%), Positives = 35/57 (62%), Gaps = 3/57 (5%)

Query  3    PSSKTCHACRHV-QDIGW-DEKWQCDGCSITHQRDDNAAINLARYE-EPPSVVGPVG  56
            PSSK CH C +  QD+   D +W+C  C   H RD NA++N+ ++  +  +++ P+G
Sbjct  324  PSSKICHVCGYYHQDLELKDREWECPDCKTIHDRDINASVNIKKFALDKQNLISPLG  380


>gi|298675559|ref|YP_003727309.1| IS605 OrfB family transposase [Methanohalobium evestigatum Z-7303]
 gi|298288547|gb|ADI74513.1| transposase, IS605 OrfB family [Methanohalobium evestigatum Z-7303]
Length=375

 Score = 48.5 bits (114),  Expect = 3e-04, Method: Composition-based stats.
 Identities = 20/45 (45%), Positives = 28/45 (63%), Gaps = 2/45 (4%)

Query  3    PSSKTCHAC-RHVQDIGW-DEKWQCDGCSITHQRDDNAAINLARY  45
            PSSK CH C  H QD+   D +W+C  C   H RD NA++N+ ++
Sbjct  316  PSSKICHVCGYHHQDLELKDREWECPDCKTIHDRDINASVNIKKF  360


>gi|298675093|ref|YP_003726843.1| IS605 OrfB family transposase [Methanohalobium evestigatum Z-7303]
 gi|298288081|gb|ADI74047.1| transposase, IS605 OrfB family [Methanohalobium evestigatum Z-7303]
Length=383

 Score = 48.5 bits (114),  Expect = 3e-04, Method: Composition-based stats.
 Identities = 20/45 (45%), Positives = 28/45 (63%), Gaps = 2/45 (4%)

Query  3    PSSKTCHAC-RHVQDIGW-DEKWQCDGCSITHQRDDNAAINLARY  45
            PSSK CH C  H QD+   D +W+C  C   H RD NA++N+ ++
Sbjct  324  PSSKICHVCGYHHQDLELKDREWECPDCKTIHDRDINASVNIKKF  368


>gi|307152443|ref|YP_003887827.1| IS605 OrfB family transposase [Cyanothece sp. PCC 7822]
 gi|306982671|gb|ADN14552.1| transposase, IS605 OrfB family [Cyanothece sp. PCC 7822]
Length=389

 Score = 47.8 bits (112),  Expect = 5e-04, Method: Composition-based stats.
 Identities = 28/68 (42%), Positives = 35/68 (52%), Gaps = 3/68 (4%)

Query  3    PSSKTCHAC-RHVQDIGWDEK-WQCDGCSITHQRDDNAAINLARYEEPPSVVGPVGAAVK  60
            PSSKTCH C   V  +  + + W C+ C  TH RD NAAINL R E    +    G    
Sbjct  311  PSSKTCHVCLNQVGSLPLNVRTWTCENCQTTHDRDVNAAINL-RDEGLRILTSGTGGKAY  369

Query  61   RGADRKTG  68
            R   R++G
Sbjct  370  RQTVRRSG  377


>gi|157364261|ref|YP_001471028.1| IS605 family transposase OrfB [Thermotoga lettingae TMO]
 gi|157314865|gb|ABV33964.1| transposase, IS605 OrfB family [Thermotoga lettingae TMO]
Length=390

 Score = 47.8 bits (112),  Expect = 6e-04, Method: Composition-based stats.
 Identities = 22/45 (49%), Positives = 28/45 (63%), Gaps = 2/45 (4%)

Query  3    PSSKTCHACRHV-QDIGW-DEKWQCDGCSITHQRDDNAAINLARY  45
            PSSKTC  C ++ +++   D  W C  C  TH RD+NAAINL  Y
Sbjct  315  PSSKTCSICGYINKELELKDRVWTCPKCGTTHDRDENAAINLREY  359


>gi|73670687|ref|YP_306702.1| transposase [Methanosarcina barkeri str. Fusaro]
 gi|72397849|gb|AAZ72122.1| transposase [Methanosarcina barkeri str. Fusaro]
Length=370

 Score = 47.8 bits (112),  Expect = 6e-04, Method: Composition-based stats.
 Identities = 21/45 (47%), Positives = 26/45 (58%), Gaps = 2/45 (4%)

Query  3    PSSKTCHAC-RHVQDIGW-DEKWQCDGCSITHQRDDNAAINLARY  45
            PSSK CH C  H  D+   D +W C  C   H RD NAAIN+ ++
Sbjct  316  PSSKVCHVCGYHNSDLTLKDREWTCPDCKTKHDRDINAAINIKKF  360



Lambda     K      H
   0.315    0.135    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 131127635258




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40