BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0835
Length=214
Score E
Sequences producing significant alignments: (Bits) Value
gi|15840247|ref|NP_335284.1| hypothetical protein MT0856 [Mycoba... 436 8e-121
gi|289553091|ref|ZP_06442301.1| lipoprotein lpqQ [Mycobacterium ... 436 1e-120
gi|15607975|ref|NP_215350.1| lipoprotein LpqQ [Mycobacterium tub... 434 4e-120
gi|254231146|ref|ZP_04924473.1| lipoprotein lpqQ [Mycobacterium ... 432 2e-119
gi|31792023|ref|NP_854516.1| lipoprotein LpqQ [Mycobacterium bov... 431 2e-119
gi|339630900|ref|YP_004722542.1| hypothetical protein MAF_08440 ... 431 4e-119
gi|240169960|ref|ZP_04748619.1| lipoprotein LpqQ [Mycobacterium ... 256 1e-66
gi|183981385|ref|YP_001849676.1| lipoprotein LpqQ [Mycobacterium... 246 2e-63
gi|118617999|ref|YP_906331.1| lipoprotein LpqQ [Mycobacterium ul... 246 2e-63
gi|296169032|ref|ZP_06850694.1| lipoprotein LpqQ [Mycobacterium ... 188 4e-46
gi|254775733|ref|ZP_05217249.1| LpqQ protein [Mycobacterium aviu... 122 3e-26
gi|336458044|gb|EGO37031.1| hypothetical protein MAPs_17420 [Myc... 121 6e-26
gi|118463645|ref|YP_882470.1| LpqQ protein [Mycobacterium avium ... 80.1 2e-13
gi|41407314|ref|NP_960150.1| LpqQ [Mycobacterium avium subsp. pa... 79.0 4e-13
gi|169628921|ref|YP_001702570.1| hypothetical protein MAB_1833 [... 60.5 2e-07
gi|120403099|ref|YP_952928.1| LpqA [Mycobacterium vanbaalenii PY... 52.0 5e-05
gi|118617524|ref|YP_905856.1| lipoprotein LpqA [Mycobacterium ul... 52.0 5e-05
gi|333991380|ref|YP_004523994.1| hypothetical protein JDM601_274... 47.4 0.001
gi|296171257|ref|ZP_06852661.1| LpqA family protein [Mycobacteri... 47.4 0.001
gi|240168922|ref|ZP_04747581.1| lipoprotein LpqA [Mycobacterium ... 45.4 0.006
gi|108798845|ref|YP_639042.1| protein LpqA [Mycobacterium sp. MC... 45.4 0.006
gi|296393443|ref|YP_003658327.1| hypothetical protein Srot_1023 ... 44.7 0.009
gi|342858155|ref|ZP_08714810.1| LpqA [Mycobacterium colombiense ... 42.7 0.039
gi|254820452|ref|ZP_05225453.1| LpqA [Mycobacterium intracellula... 40.0 0.20
gi|317506611|ref|ZP_07964403.1| hypothetical protein HMPREF9336_... 40.0 0.22
gi|145223262|ref|YP_001133940.1| hypothetical protein Mflv_2675 ... 40.0 0.25
gi|315443722|ref|YP_004076601.1| hypothetical protein Mspyr1_211... 39.7 0.27
gi|169628208|ref|YP_001701857.1| hypothetical protein MAB_1115 [... 39.3 0.42
gi|289746822|ref|ZP_06506200.1| lipoprotein lpqA [Mycobacterium ... 39.3 0.44
gi|298526487|ref|ZP_07013896.1| predicted protein [Mycobacterium... 38.9 0.47
gi|317506350|ref|ZP_07964162.1| hypothetical protein HMPREF9336_... 38.5 0.66
gi|254552095|ref|ZP_05142542.1| lipoprotein lpqA [Mycobacterium ... 38.5 0.69
gi|254365651|ref|ZP_04981696.1| lipoprotein lpqA [Mycobacterium ... 38.5 0.69
gi|15610153|ref|NP_217532.1| lipoprotein LpqA [Mycobacterium tub... 38.5 0.72
gi|41409154|ref|NP_961990.1| LpqA [Mycobacterium avium subsp. pa... 38.1 0.77
gi|291228699|ref|XP_002734311.1| PREDICTED: hypothetical protein... 37.7 1.1
gi|329965025|ref|ZP_08302013.1| PAS domain S-box protein [Bacter... 37.4 1.3
gi|339475760|gb|EGP90851.1| hypothetical protein MYCGRDRAFT_2216... 37.0 1.9
gi|341899196|gb|EGT55131.1| hypothetical protein CAEBREN_03223 [... 36.6 2.6
gi|289444582|ref|ZP_06434326.1| lipoprotein lpqA [Mycobacterium ... 36.2 3.4
gi|163755243|ref|ZP_02162363.1| thiol:disulfide interchange prot... 35.8 4.5
gi|297197897|ref|ZP_06915294.1| LOW QUALITY PROTEIN: magnesium o... 35.4 5.1
gi|289755134|ref|ZP_06514512.1| lipoprotein lpqA [Mycobacterium ... 34.7 9.2
>gi|15840247|ref|NP_335284.1| hypothetical protein MT0856 [Mycobacterium tuberculosis CDC1551]
gi|13880405|gb|AAK45098.1| hypothetical protein MT0856 [Mycobacterium tuberculosis CDC1551]
Length=283
Score = 436 bits (1122), Expect = 8e-121, Method: Compositional matrix adjust.
Identities = 214/214 (100%), Positives = 214/214 (100%), Gaps = 0/214 (0%)
Query 1 VCCSTAAKSAVIVCCAAIATTACSFQATSTQPSTAPPTSRVDSLIVSIEDVRRIANYEEL 60
VCCSTAAKSAVIVCCAAIATTACSFQATSTQPSTAPPTSRVDSLIVSIEDVRRIANYEEL
Sbjct 70 VCCSTAAKSAVIVCCAAIATTACSFQATSTQPSTAPPTSRVDSLIVSIEDVRRIANYEEL 129
Query 61 AAHFQTDLREPPEADTNVPGPCRVVGSSDRTFGTDWSEFRSAGYHGVTDDLRPGGPVMVE 120
AAHFQTDLREPPEADTNVPGPCRVVGSSDRTFGTDWSEFRSAGYHGVTDDLRPGGPVMVE
Sbjct 130 AAHFQTDLREPPEADTNVPGPCRVVGSSDRTFGTDWSEFRSAGYHGVTDDLRPGGPVMVE 189
Query 121 TVSQAIALYPDPSTARGVFHRLESSLAECAGLHDPYFDFILDRPDASTVRIGAAGWSHVY 180
TVSQAIALYPDPSTARGVFHRLESSLAECAGLHDPYFDFILDRPDASTVRIGAAGWSHVY
Sbjct 190 TVSQAIALYPDPSTARGVFHRLESSLAECAGLHDPYFDFILDRPDASTVRIGAAGWSHVY 249
Query 181 RLKSSVFISVGVLGIEPAEPIANVILQTISDRIQ 214
RLKSSVFISVGVLGIEPAEPIANVILQTISDRIQ
Sbjct 250 RLKSSVFISVGVLGIEPAEPIANVILQTISDRIQ 283
>gi|289553091|ref|ZP_06442301.1| lipoprotein lpqQ [Mycobacterium tuberculosis KZN 605]
gi|289752882|ref|ZP_06512260.1| lipoprotein lpqQ [Mycobacterium tuberculosis EAS054]
gi|289752888|ref|ZP_06512266.1| lipoprotein LpqQ [Mycobacterium tuberculosis EAS054]
gi|289437723|gb|EFD20216.1| lipoprotein lpqQ [Mycobacterium tuberculosis KZN 605]
gi|289693469|gb|EFD60898.1| lipoprotein lpqQ [Mycobacterium tuberculosis EAS054]
gi|289693475|gb|EFD60904.1| lipoprotein LpqQ [Mycobacterium tuberculosis EAS054]
Length=251
Score = 436 bits (1120), Expect = 1e-120, Method: Compositional matrix adjust.
Identities = 214/214 (100%), Positives = 214/214 (100%), Gaps = 0/214 (0%)
Query 1 VCCSTAAKSAVIVCCAAIATTACSFQATSTQPSTAPPTSRVDSLIVSIEDVRRIANYEEL 60
VCCSTAAKSAVIVCCAAIATTACSFQATSTQPSTAPPTSRVDSLIVSIEDVRRIANYEEL
Sbjct 38 VCCSTAAKSAVIVCCAAIATTACSFQATSTQPSTAPPTSRVDSLIVSIEDVRRIANYEEL 97
Query 61 AAHFQTDLREPPEADTNVPGPCRVVGSSDRTFGTDWSEFRSAGYHGVTDDLRPGGPVMVE 120
AAHFQTDLREPPEADTNVPGPCRVVGSSDRTFGTDWSEFRSAGYHGVTDDLRPGGPVMVE
Sbjct 98 AAHFQTDLREPPEADTNVPGPCRVVGSSDRTFGTDWSEFRSAGYHGVTDDLRPGGPVMVE 157
Query 121 TVSQAIALYPDPSTARGVFHRLESSLAECAGLHDPYFDFILDRPDASTVRIGAAGWSHVY 180
TVSQAIALYPDPSTARGVFHRLESSLAECAGLHDPYFDFILDRPDASTVRIGAAGWSHVY
Sbjct 158 TVSQAIALYPDPSTARGVFHRLESSLAECAGLHDPYFDFILDRPDASTVRIGAAGWSHVY 217
Query 181 RLKSSVFISVGVLGIEPAEPIANVILQTISDRIQ 214
RLKSSVFISVGVLGIEPAEPIANVILQTISDRIQ
Sbjct 218 RLKSSVFISVGVLGIEPAEPIANVILQTISDRIQ 251
>gi|15607975|ref|NP_215350.1| lipoprotein LpqQ [Mycobacterium tuberculosis H37Rv]
gi|148660612|ref|YP_001282135.1| putative lipoprotein LpqQ [Mycobacterium tuberculosis H37Ra]
gi|148822041|ref|YP_001286795.1| lipoprotein lpqQ [Mycobacterium tuberculosis F11]
65 more sequence titles
Length=214
Score = 434 bits (1116), Expect = 4e-120, Method: Compositional matrix adjust.
Identities = 213/214 (99%), Positives = 214/214 (100%), Gaps = 0/214 (0%)
Query 1 VCCSTAAKSAVIVCCAAIATTACSFQATSTQPSTAPPTSRVDSLIVSIEDVRRIANYEEL 60
+CCSTAAKSAVIVCCAAIATTACSFQATSTQPSTAPPTSRVDSLIVSIEDVRRIANYEEL
Sbjct 1 MCCSTAAKSAVIVCCAAIATTACSFQATSTQPSTAPPTSRVDSLIVSIEDVRRIANYEEL 60
Query 61 AAHFQTDLREPPEADTNVPGPCRVVGSSDRTFGTDWSEFRSAGYHGVTDDLRPGGPVMVE 120
AAHFQTDLREPPEADTNVPGPCRVVGSSDRTFGTDWSEFRSAGYHGVTDDLRPGGPVMVE
Sbjct 61 AAHFQTDLREPPEADTNVPGPCRVVGSSDRTFGTDWSEFRSAGYHGVTDDLRPGGPVMVE 120
Query 121 TVSQAIALYPDPSTARGVFHRLESSLAECAGLHDPYFDFILDRPDASTVRIGAAGWSHVY 180
TVSQAIALYPDPSTARGVFHRLESSLAECAGLHDPYFDFILDRPDASTVRIGAAGWSHVY
Sbjct 121 TVSQAIALYPDPSTARGVFHRLESSLAECAGLHDPYFDFILDRPDASTVRIGAAGWSHVY 180
Query 181 RLKSSVFISVGVLGIEPAEPIANVILQTISDRIQ 214
RLKSSVFISVGVLGIEPAEPIANVILQTISDRIQ
Sbjct 181 RLKSSVFISVGVLGIEPAEPIANVILQTISDRIQ 214
>gi|254231146|ref|ZP_04924473.1| lipoprotein lpqQ [Mycobacterium tuberculosis C]
gi|124600205|gb|EAY59215.1| lipoprotein lpqQ [Mycobacterium tuberculosis C]
Length=214
Score = 432 bits (1110), Expect = 2e-119, Method: Compositional matrix adjust.
Identities = 212/214 (99%), Positives = 214/214 (100%), Gaps = 0/214 (0%)
Query 1 VCCSTAAKSAVIVCCAAIATTACSFQATSTQPSTAPPTSRVDSLIVSIEDVRRIANYEEL 60
+CCSTAAKSAVIVCCAAIATTACSFQATSTQPSTAPPTSRVDSLIVSIEDVRRIANYEEL
Sbjct 1 MCCSTAAKSAVIVCCAAIATTACSFQATSTQPSTAPPTSRVDSLIVSIEDVRRIANYEEL 60
Query 61 AAHFQTDLREPPEADTNVPGPCRVVGSSDRTFGTDWSEFRSAGYHGVTDDLRPGGPVMVE 120
AAHFQTDLREPPEADTNVPGPCRVVGSSDRTFGTDWSEFRSAGYHGVTDDLRPGGPV+VE
Sbjct 61 AAHFQTDLREPPEADTNVPGPCRVVGSSDRTFGTDWSEFRSAGYHGVTDDLRPGGPVIVE 120
Query 121 TVSQAIALYPDPSTARGVFHRLESSLAECAGLHDPYFDFILDRPDASTVRIGAAGWSHVY 180
TVSQAIALYPDPSTARGVFHRLESSLAECAGLHDPYFDFILDRPDASTVRIGAAGWSHVY
Sbjct 121 TVSQAIALYPDPSTARGVFHRLESSLAECAGLHDPYFDFILDRPDASTVRIGAAGWSHVY 180
Query 181 RLKSSVFISVGVLGIEPAEPIANVILQTISDRIQ 214
RLKSSVFISVGVLGIEPAEPIANVILQTISDRIQ
Sbjct 181 RLKSSVFISVGVLGIEPAEPIANVILQTISDRIQ 214
>gi|31792023|ref|NP_854516.1| lipoprotein LpqQ [Mycobacterium bovis AF2122/97]
gi|121636758|ref|YP_976981.1| putative lipoprotein lpqQ [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|224989229|ref|YP_002643916.1| putative lipoprotein [Mycobacterium bovis BCG str. Tokyo 172]
gi|31617610|emb|CAD93720.1| POSSIBLE LIPOPROTEIN LPQQ [Mycobacterium bovis AF2122/97]
gi|121492405|emb|CAL70873.1| Possible lipoprotein lpqQ [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|224772342|dbj|BAH25148.1| putative lipoprotein [Mycobacterium bovis BCG str. Tokyo 172]
gi|341600774|emb|CCC63445.1| possible lipoprotein lpqQ [Mycobacterium bovis BCG str. Moreau
RDJ]
Length=214
Score = 431 bits (1109), Expect = 2e-119, Method: Compositional matrix adjust.
Identities = 212/214 (99%), Positives = 213/214 (99%), Gaps = 0/214 (0%)
Query 1 VCCSTAAKSAVIVCCAAIATTACSFQATSTQPSTAPPTSRVDSLIVSIEDVRRIANYEEL 60
+CCSTAAKSAVIVCCAAIATTACSFQATSTQPSTAPPTSRVDSLIVSIEDVRRIANYEEL
Sbjct 1 MCCSTAAKSAVIVCCAAIATTACSFQATSTQPSTAPPTSRVDSLIVSIEDVRRIANYEEL 60
Query 61 AAHFQTDLREPPEADTNVPGPCRVVGSSDRTFGTDWSEFRSAGYHGVTDDLRPGGPVMVE 120
AAHFQTDLREPPEADTNVPGPCRVVGSSDRTFGTDWSEFRSAGYHGVTDDLRPGGPVMVE
Sbjct 61 AAHFQTDLREPPEADTNVPGPCRVVGSSDRTFGTDWSEFRSAGYHGVTDDLRPGGPVMVE 120
Query 121 TVSQAIALYPDPSTARGVFHRLESSLAECAGLHDPYFDFILDRPDASTVRIGAAGWSHVY 180
TVSQAIALYPDPSTARGVFHRLESSLAECAGLHDPYFDFIL RPDASTVRIGAAGWSHVY
Sbjct 121 TVSQAIALYPDPSTARGVFHRLESSLAECAGLHDPYFDFILGRPDASTVRIGAAGWSHVY 180
Query 181 RLKSSVFISVGVLGIEPAEPIANVILQTISDRIQ 214
RLKSSVFISVGVLGIEPAEPIANVILQTISDRIQ
Sbjct 181 RLKSSVFISVGVLGIEPAEPIANVILQTISDRIQ 214
>gi|339630900|ref|YP_004722542.1| hypothetical protein MAF_08440 [Mycobacterium africanum GM041182]
gi|339330256|emb|CCC25916.1| putative lipoprotein LPQQ [Mycobacterium africanum GM041182]
Length=214
Score = 431 bits (1108), Expect = 4e-119, Method: Compositional matrix adjust.
Identities = 212/214 (99%), Positives = 213/214 (99%), Gaps = 0/214 (0%)
Query 1 VCCSTAAKSAVIVCCAAIATTACSFQATSTQPSTAPPTSRVDSLIVSIEDVRRIANYEEL 60
+CCSTAAKSAVIVCCAAIATTACSFQATSTQPSTAPPTSRVDSLIVSIEDVRRIANYEEL
Sbjct 1 MCCSTAAKSAVIVCCAAIATTACSFQATSTQPSTAPPTSRVDSLIVSIEDVRRIANYEEL 60
Query 61 AAHFQTDLREPPEADTNVPGPCRVVGSSDRTFGTDWSEFRSAGYHGVTDDLRPGGPVMVE 120
AAHFQTDLREPPEADTNVPGPCRVVGSSDRTFGTDWSE RSAGYHGVTDDLRPGGPVMVE
Sbjct 61 AAHFQTDLREPPEADTNVPGPCRVVGSSDRTFGTDWSESRSAGYHGVTDDLRPGGPVMVE 120
Query 121 TVSQAIALYPDPSTARGVFHRLESSLAECAGLHDPYFDFILDRPDASTVRIGAAGWSHVY 180
TVSQAIALYPDPSTARGVFHRLESSLAECAGLHDPYFDFILDRPDASTVRIGAAGWSHVY
Sbjct 121 TVSQAIALYPDPSTARGVFHRLESSLAECAGLHDPYFDFILDRPDASTVRIGAAGWSHVY 180
Query 181 RLKSSVFISVGVLGIEPAEPIANVILQTISDRIQ 214
RLKSSVFISVGVLGIEPAEPIANVILQTISDRIQ
Sbjct 181 RLKSSVFISVGVLGIEPAEPIANVILQTISDRIQ 214
>gi|240169960|ref|ZP_04748619.1| lipoprotein LpqQ [Mycobacterium kansasii ATCC 12478]
Length=231
Score = 256 bits (654), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 119/215 (56%), Positives = 153/215 (72%), Gaps = 1/215 (0%)
Query 1 VCCSTAAKSAVIVCCAAIATTACSFQATSTQPSTAP-PTSRVDSLIVSIEDVRRIANYEE 59
V + KS I+C A + TACS + TS +PST P S D+LI+ +E+VRRIANYEE
Sbjct 17 VALAGTGKSLFIICTALLVITACSHKGTSAKPSTTTTPLSGADALIIGVEEVRRIANYEE 76
Query 60 LAAHFQTDLREPPEADTNVPGPCRVVGSSDRTFGTDWSEFRSAGYHGVTDDLRPGGPVMV 119
L AH DLR PP D N PGPCR G+SD TF + W EFRSAGY GVTD++RPGG +V
Sbjct 77 LTAHSHADLRHPPPGDLNAPGPCRAAGTSDLTFASGWIEFRSAGYSGVTDEIRPGGMALV 136
Query 120 ETVSQAIALYPDPSTARGVFHRLESSLAECAGLHDPYFDFILDRPDASTVRIGAAGWSHV 179
++VSQA+A+YPD + AR +LE+SL C LHDP + F +D+PD +T+RI GWSH+
Sbjct 137 DSVSQAVAIYPDANAARAALEQLEASLNACMALHDPKYTFNVDKPDPATLRITDQGWSHL 196
Query 180 YRLKSSVFISVGVLGIEPAEPIANVILQTISDRIQ 214
YR+K++V +SVGVLGIEPAE IAN +L I DR++
Sbjct 197 YRVKNAVLMSVGVLGIEPAERIANTVLDAICDRVK 231
>gi|183981385|ref|YP_001849676.1| lipoprotein LpqQ [Mycobacterium marinum M]
gi|183174711|gb|ACC39821.1| lipoprotein LpqQ [Mycobacterium marinum M]
Length=241
Score = 246 bits (628), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 119/209 (57%), Positives = 153/209 (74%), Gaps = 2/209 (0%)
Query 8 KSAVIVCCAAIATTACSFQATSTQPSTAPPTSR--VDSLIVSIEDVRRIANYEELAAHFQ 65
+SA IVC A +A +ACS Q+T+ +PST T D+LI+S+E+VRRIANYEEL AH
Sbjct 33 RSAFIVCIAVLAISACSHQSTTAKPSTTTSTPPSGADALIISVEEVRRIANYEELTAHAH 92
Query 66 TDLREPPEADTNVPGPCRVVGSSDRTFGTDWSEFRSAGYHGVTDDLRPGGPVMVETVSQA 125
DLR PP D + PGPCR G+SD TF + W EFRSAGY GVTDD+ PGG ++++VSQA
Sbjct 93 ADLRHPPPGDLSAPGPCRAAGTSDLTFASGWLEFRSAGYSGVTDDIDPGGKALIDSVSQA 152
Query 126 IALYPDPSTARGVFHRLESSLAECAGLHDPYFDFILDRPDASTVRIGAAGWSHVYRLKSS 185
+A+YPD AR +LE+SL C +HDP +DF +D+ D +T+RI AGWSH+YR K+S
Sbjct 153 VAIYPDEHAARNALDQLETSLTTCVAMHDPNYDFDVDKSDPTTLRITDAGWSHLYRAKNS 212
Query 186 VFISVGVLGIEPAEPIANVILQTISDRIQ 214
V ISVGVLGIEPAE IAN +L+ I DR++
Sbjct 213 VLISVGVLGIEPAERIANAVLEAICDRVK 241
>gi|118617999|ref|YP_906331.1| lipoprotein LpqQ [Mycobacterium ulcerans Agy99]
gi|118570109|gb|ABL04860.1| lipoprotein LpqQ [Mycobacterium ulcerans Agy99]
Length=269
Score = 246 bits (627), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 119/209 (57%), Positives = 153/209 (74%), Gaps = 2/209 (0%)
Query 8 KSAVIVCCAAIATTACSFQATSTQPSTAPPTSR--VDSLIVSIEDVRRIANYEELAAHFQ 65
+SA IVC A +A +ACS Q+T+ +PST T D+LI+S+E+VRRIANYEEL AH
Sbjct 61 RSAFIVCIAVLAISACSRQSTTAKPSTTTSTPPSGADALIISVEEVRRIANYEELTAHAH 120
Query 66 TDLREPPEADTNVPGPCRVVGSSDRTFGTDWSEFRSAGYHGVTDDLRPGGPVMVETVSQA 125
DLR PP D + PGPCR G+SD TF + W EFRSAGY GVTDD+ PGG ++++VSQA
Sbjct 121 ADLRHPPPGDLSAPGPCRAAGTSDLTFASGWLEFRSAGYSGVTDDIDPGGKALIDSVSQA 180
Query 126 IALYPDPSTARGVFHRLESSLAECAGLHDPYFDFILDRPDASTVRIGAAGWSHVYRLKSS 185
+A+YPD AR +LE+SL C +HDP +DF +D+ D +T+RI AGWSH+YR K+S
Sbjct 181 VAIYPDEHAARNALDQLETSLTTCVAMHDPNYDFDVDKSDPTTLRITDAGWSHLYRAKNS 240
Query 186 VFISVGVLGIEPAEPIANVILQTISDRIQ 214
V ISVGVLGIEPAE IAN +L+ I DR++
Sbjct 241 VLISVGVLGIEPAERIANAVLEAICDRVK 269
>gi|296169032|ref|ZP_06850694.1| lipoprotein LpqQ [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295896291|gb|EFG75950.1| lipoprotein LpqQ [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=222
Score = 188 bits (478), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 90/195 (47%), Positives = 130/195 (67%), Gaps = 6/195 (3%)
Query 23 CSFQATSTQPSTAPPTSRV--DSLIVSIEDVRRIANYEELAAHFQTDLREPP-EADTNVP 79
CS T T T P++ +SL++S+++ RRIAN+E L + D +PP E N P
Sbjct 31 CSHSPTGT---TGAPSAHAYAESLVISLDEARRIANFEGLQPYSYADRDDPPRETVGNPP 87
Query 80 GPCRVVGSSDRTFGTDWSEFRSAGYHGVTDDLRPGGPVMVETVSQAIALYPDPSTARGVF 139
GPCR VG++D TF W E+RS GY G TDDLRPGG + V+ A+ +YPD +TARG
Sbjct 88 GPCRAVGATDLTFAGGWKEYRSVGYSGSTDDLRPGGIAPINEVTNAVVVYPDAATARGAL 147
Query 140 HRLESSLAECAGLHDPYFDFILDRPDASTVRIGAAGWSHVYRLKSSVFISVGVLGIEPAE 199
++L S+L +C LH +DF L++PD T+++ + GW H+Y ++SSV +SVGVLGIEP +
Sbjct 148 NQLHSTLDQCISLHHSAYDFALNKPDTETLKLDSDGWVHLYTVRSSVLVSVGVLGIEPTQ 207
Query 200 PIANVILQTISDRIQ 214
+AN +LQT++ RI+
Sbjct 208 QVANNLLQTVTGRIK 222
>gi|254775733|ref|ZP_05217249.1| LpqQ protein [Mycobacterium avium subsp. avium ATCC 25291]
Length=165
Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/167 (41%), Positives = 96/167 (58%), Gaps = 7/167 (4%)
Query 51 VRRIANYEELAAHFQTDLREPPEADTNVPGPCRVVGSSDRTFGTDWSEFRSAGYHGVTDD 110
+RRIA+ E L + + +++P +D+N P PCR V + F DW++FRSA Y+G D
Sbjct 1 MRRIADTESLNSGPGSQVQQPRHSDSNTPTPCRAVFDQEAIFDGDWTQFRSATYNG---D 57
Query 111 LRPG-GPVMVE---TVSQAIALYPDPSTARGVFHRLESSLAECAGLHDPYFDFILDRPDA 166
+ G G V V V QA+ +Y D TAR F +L SL C LH +DF + + D
Sbjct 58 VYSGTGQVKVRGIANVVQAVGIYRDADTARAHFDQLLPSLTACTALHAKNYDFTVRQLDT 117
Query 167 STVRIGAAGWSHVYRLKSSVFISVGVLGIEPAEPIANVILQTISDRI 213
T+ + ++ W YR+KSSV I VG LG+ E A ILQTI++R+
Sbjct 118 DTLSLSSSVWKLFYRVKSSVLIYVGALGVPQTEQSAQQILQTITNRV 164
>gi|336458044|gb|EGO37031.1| hypothetical protein MAPs_17420 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=165
Score = 121 bits (304), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 66/167 (40%), Positives = 96/167 (58%), Gaps = 7/167 (4%)
Query 51 VRRIANYEELAAHFQTDLREPPEADTNVPGPCRVVGSSDRTFGTDWSEFRSAGYHGVTDD 110
+RRIA+ E L + + +++P +D+N P PCR V + F DW++FRSA Y+G D
Sbjct 1 MRRIADTESLNSGPGSQVQQPRHSDSNTPTPCRAVFDQEAIFDGDWTQFRSATYNG---D 57
Query 111 LRPG-GPVMVE---TVSQAIALYPDPSTARGVFHRLESSLAECAGLHDPYFDFILDRPDA 166
+ G G V V V QA+ +Y D TAR F +L SL C LH +DF + + D
Sbjct 58 VYSGTGQVKVRGIANVVQAVGIYRDADTARAHFDQLLPSLTACTALHAKNYDFTVRQLDT 117
Query 167 STVRIGAAGWSHVYRLKSSVFISVGVLGIEPAEPIANVILQTISDRI 213
T+ + ++ W YR+KSSV + VG LG+ E A ILQTI++R+
Sbjct 118 DTLSLSSSVWKLFYRVKSSVLLYVGALGVPQTEQSAQQILQTITNRV 164
>gi|118463645|ref|YP_882470.1| LpqQ protein [Mycobacterium avium 104]
gi|118164932|gb|ABK65829.1| LpqQ protein [Mycobacterium avium 104]
Length=99
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/95 (42%), Positives = 55/95 (58%), Gaps = 0/95 (0%)
Query 119 VETVSQAIALYPDPSTARGVFHRLESSLAECAGLHDPYFDFILDRPDASTVRIGAAGWSH 178
+ V QA+ +Y D TAR F +L SL C LH +DF + + D T+ + ++ W
Sbjct 4 IANVVQAVGIYRDADTARAHFDQLLPSLTACTALHAKNYDFTVRQLDTDTLSLSSSVWKL 63
Query 179 VYRLKSSVFISVGVLGIEPAEPIANVILQTISDRI 213
YR+KSSV I VG LG+ E A ILQTI++R+
Sbjct 64 FYRVKSSVLIYVGALGVPQTEQSAQQILQTITNRV 98
>gi|41407314|ref|NP_960150.1| LpqQ [Mycobacterium avium subsp. paratuberculosis K-10]
gi|41395666|gb|AAS03533.1| LpqQ [Mycobacterium avium subsp. paratuberculosis K-10]
Length=99
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 55/95 (58%), Gaps = 0/95 (0%)
Query 119 VETVSQAIALYPDPSTARGVFHRLESSLAECAGLHDPYFDFILDRPDASTVRIGAAGWSH 178
+ V QA+ +Y D TAR F +L SL C LH +DF + + D T+ + ++ W
Sbjct 4 IANVVQAVGIYRDADTARAHFDQLLPSLTACTALHAKNYDFTVRQLDTDTLSLSSSVWKL 63
Query 179 VYRLKSSVFISVGVLGIEPAEPIANVILQTISDRI 213
YR+KSSV + VG LG+ E A ILQTI++R+
Sbjct 64 FYRVKSSVLLYVGALGVPQTEQSAQQILQTITNRV 98
>gi|169628921|ref|YP_001702570.1| hypothetical protein MAB_1833 [Mycobacterium abscessus ATCC 19977]
gi|169240888|emb|CAM61916.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=208
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 96/220 (44%), Gaps = 31/220 (14%)
Query 11 VIVCCAAIATTACSFQATSTQPSTAPPTSRVDSLIVSIEDVRRIANYEELAAHFQTDLRE 70
+++ + C+ T+T APP S +L +S+ +VR I L + DL +
Sbjct 1 MLLAGLLMVLVGCTQAPTATTEPPAPPDS--STLTLSVAEVREITP-PALESEPDFDLHK 57
Query 71 P-----PEADTNVPGPCRVVGSSDRTFGTDWSEFRSAGYHGVTDDLRPGGPVMVETVSQA 125
P P+ D +V C+ + + D+ FG W+ FR+ Y G ++ + Q+
Sbjct 58 PYTDTQPDFDMSVA--CQKLFNQDQKFGEGWTNFRTLTYSGPSN----------IGIKQS 105
Query 126 IALYPDPSTARGVFHRLESSLAEC------AGLHDPYFDFILDRPDASTV-----RIGAA 174
IA+YPD + A+ VF ++ +L+ C A PY L D + + +
Sbjct 106 IAVYPDRNAAQSVFGGIQDNLSACQKSYPVARYGAPYTLSKLAGDDKTVMAQYADTVNGP 165
Query 175 GWSHVYRLKSSVFISVGVLGIEPAEPIANVILQTISDRIQ 214
G +YRL V I V +A +LQ I ++++
Sbjct 166 GSVELYRLDEQVIIDVSAAHFSTDPHVAETVLQRIREKLR 205
>gi|120403099|ref|YP_952928.1| LpqA [Mycobacterium vanbaalenii PYR-1]
gi|119955917|gb|ABM12922.1| LpqA [Mycobacterium vanbaalenii PYR-1]
Length=212
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 84/200 (42%), Gaps = 26/200 (13%)
Query 5 TAAKSAVIVCCAAIATTACSFQATSTQPSTAPPTSR-------VDSLIVSIEDVRRIANY 57
T SA ++C AI T C+ Q T AP VD++++ ++ +
Sbjct 2 TGRASASLLCAVAILATGCTQQVGGTAVRPAPAADEGSLSPIDVDTVLLDRARMQAVTGA 61
Query 58 -EELAAHFQTDLREPPEAD---TNVPGPCRVVGSSDRTFGTDWSEFRSAGYHGVTDDLRP 113
E L T+ + P + D VP C V + + FG+D EFR + Y P
Sbjct 62 GEHLTMIPGTESKVPVDLDLMLKTVPPQCEWVYAETQVFGSDVEEFRKSTYQN-----PP 116
Query 114 GGPVMVETVSQAIALYPDPSTARGVFHRLESSLAECAGLHDPYFDFILD---RPDASTVR 170
GG + +SQA A YPD +TAR F + + C G D + D D+ R
Sbjct 117 GGGL----ISQAAAGYPDAATARRAFDVVAERIEAC-GATDSGRAMVGDVTRTTDSVHTR 171
Query 171 IGAAGWSHVYRLKSSVFISV 190
G G YR+KS + + +
Sbjct 172 PGDCGRD--YRVKSVLLVEI 189
>gi|118617524|ref|YP_905856.1| lipoprotein LpqA [Mycobacterium ulcerans Agy99]
gi|183981705|ref|YP_001849996.1| lipoprotein LpqA [Mycobacterium marinum M]
gi|118569634|gb|ABL04385.1| lipoprotein LpqA [Mycobacterium ulcerans Agy99]
gi|183175031|gb|ACC40141.1| lipoprotein LpqA [Mycobacterium marinum M]
Length=209
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/211 (25%), Positives = 89/211 (43%), Gaps = 19/211 (9%)
Query 11 VIVCCAAIATTACS----FQATSTQPSTAPPTSRVDSLIVSIEDVRRIANY-EELAAHFQ 65
+++CCA + AC+ +A ++AP + +L++ +R I E+L
Sbjct 8 LLMCCATLLAAACTRVVDGEALPAFGASAPEARQAGALLLDQTRMRAITGAGEDLTIIPA 67
Query 66 TDLREPPEAD---TNVPGPCRVVGSSDRTFGTDWSEFRSAGYHGVTDDLRPGGPVMVETV 122
D P + D P CR + S TFG D AG+H T P + +
Sbjct 68 MDGSYPVDIDALAKTAPVECRFIFSETTTFGPDI-----AGFHKTTFQDPPDSAL----I 118
Query 123 SQAIALYPDPSTARGVFHRLESSLAECAGLHDPYFDFILDRPDASTVRIGAAGWSHVYRL 182
S+A A+YPD AR F L ++ CA + + DA ++R+ YR+
Sbjct 119 SEAAAVYPDADIARRAFDDLVGAVGSCADSSSGWLFVSSWKADADSLRMRPGDCGRDYRV 178
Query 183 KSSVFISVGVLGIEPAEPIANVILQTISDRI 213
S + V G + +++++L I+ +
Sbjct 179 LSVALLEVTFCGFP--DSVSDIVLTNIAANV 207
>gi|333991380|ref|YP_004523994.1| hypothetical protein JDM601_2740 [Mycobacterium sp. JDM601]
gi|333487348|gb|AEF36740.1| lipoprotein LpqA [Mycobacterium sp. JDM601]
Length=194
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/180 (29%), Positives = 80/180 (45%), Gaps = 19/180 (10%)
Query 40 RVDSLIVSIEDVRRIANY-EELAAHFQTDLREPPEAD---TNVPGPCRVVGSSDRTFGTD 95
V L++ +R I EEL D P + D VP PCR + + FGT+
Sbjct 26 HVGRLMLDTPRMRAITGTGEELTIIPTMDSTGPVDIDGLAATVPPPCRFIYAETTVFGTE 85
Query 96 WSEFRSAGYHGVTDDLRPGGPVMVETVSQAIALYPDPSTARGVFHRLESSLAECAGLHDP 155
++F H T P G + +S+A A YPDP +AR F + +++AECA P
Sbjct 86 HTQF-----HKTTYQYPPRGAL----ISEAAAAYPDPESARRAFDAVVAAVAECA--DSP 134
Query 156 YFDFIL--DRPDASTVRIGAAGWSHVYRLKSSVFISVGVLGIEPAEPIANVILQTISDRI 213
++ D + A Y+LKS V + V G +E IA+++L ++ I
Sbjct 135 AGPGLVGDQTADEQFLHTRAGDCGRGYQLKSVVLLEVTHCGF--SESIADLVLTNLAAGI 192
>gi|296171257|ref|ZP_06852661.1| LpqA family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295894225|gb|EFG73982.1| LpqA family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=211
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/174 (28%), Positives = 76/174 (44%), Gaps = 17/174 (9%)
Query 41 VDSLIVSIEDVRRIANY-EELAAHFQTDLREPPEADT---NVPGPCRVVGSSDRTFGTDW 96
VD++++ +R I E L D P + D+ P CR V + TFG D
Sbjct 44 VDTILLDQSRMRAITGAGEHLTIIPSMDGTSPVDIDSLAGTAPRECRFVYAETATFGPDV 103
Query 97 SEFRSAGYHGVTDDLRPGGPVMVETVSQAIALYPDPSTARGVFHRLESSLAECAGLHDPY 156
EF H T P G + +S+ A Y D TAR F L +++ +CA D
Sbjct 104 EEF-----HKTTFQDPPDGAL----ISEGAAAYRDVDTARRAFGALVAAVGDCANTADGQ 154
Query 157 FDFILD-RPDASTVRIGAAGWSHVYRLKSSVFISVGVLGIEPAEPIANVILQTI 209
++ D DA T+ + G YRL+S + V G A+ ++++++ I
Sbjct 155 -QYVGDWAADAGTLHLRPGGCGRDYRLRSVAILEVTSCGF--AQSVSDIVMTNI 205
>gi|240168922|ref|ZP_04747581.1| lipoprotein LpqA [Mycobacterium kansasii ATCC 12478]
Length=209
Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/148 (28%), Positives = 65/148 (44%), Gaps = 17/148 (11%)
Query 11 VIVCCAAIATTACS--FQATSTQPSTAPPTS--RVDSLIVSIEDVRRIANY-EELAAHFQ 65
++ CCA T AC+ + P P VD+L++ +R I ++L
Sbjct 8 LLWCCAVALTVACTRVVDGEALPPFGLYPLDVLNVDTLMLDQARMRAITGAGDDLTIVPS 67
Query 66 TDLREPPEADT---NVPGPCRVVGSSDRTFGTDWSEFRSAGYHGVTDDLRPGGPVMVETV 122
D + P + D +P CR + + TFG D AG+H +T P G + +
Sbjct 68 MDGKHPVDIDALAEALPRECRFIYAETATFGPDI-----AGFHKITFQDPPEGAL----I 118
Query 123 SQAIALYPDPSTARGVFHRLESSLAECA 150
S+ A+Y DP AR F L +++ CA
Sbjct 119 SEGAAVYRDPGIARHAFESLVGAVSNCA 146
>gi|108798845|ref|YP_639042.1| protein LpqA [Mycobacterium sp. MCS]
gi|119867960|ref|YP_937912.1| protein LpqA [Mycobacterium sp. KMS]
gi|126434445|ref|YP_001070136.1| protein LpqA [Mycobacterium sp. JLS]
gi|108769264|gb|ABG07986.1| LpqA [Mycobacterium sp. MCS]
gi|119694049|gb|ABL91122.1| LpqA [Mycobacterium sp. KMS]
gi|126234245|gb|ABN97645.1| LpqA [Mycobacterium sp. JLS]
Length=212
Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 57/222 (26%), Positives = 92/222 (42%), Gaps = 26/222 (11%)
Query 5 TAAKSAVIVCCAAIATTACSFQATSTQPSTAP---PTSR----VDSLIVSIEDVRRIANY 57
TA +A++V AA+ T C T + P SR VD++++ ++ I
Sbjct 2 TAQATALMVSVAAVLTAGCVSVVGGTAVRSTPGLDDDSRSPVDVDTVLLETAQMQAITGA 61
Query 58 -EELAAHFQTDLREPPEAD---TNVPGPCRVVGSSDRTFGTDWSEFRSAGYHGVTDDLRP 113
E+L D + P + + +P PC+ + + +TFG + EF + D
Sbjct 62 GEDLTIIPTMDGKIPVDIEPLMEQMPTPCQWLFAESQTFGDEVEEFHKTTFQNPPD---- 117
Query 114 GGPVMVETVSQAIALYPDPSTARGVFHRLESSLAECAGLH--DPYFDFILDRPDASTVRI 171
GG +SQ A Y DP TAR F + + + C + Y DA R
Sbjct 118 GG-----LISQGAAGYRDPETARRAFDGVVALVDGCGTTNYGPAYIGEWTATADAVQTRP 172
Query 172 GAAGWSHVYRLKSSVFISVGVLGIEPAEPIANVILQTISDRI 213
G G YRLKS+V + V A P ++++ I ++
Sbjct 173 GDCGRD--YRLKSTVLVEVTFCAFTEAVP--DIVMTNILAKV 210
>gi|296393443|ref|YP_003658327.1| hypothetical protein Srot_1023 [Segniliparus rotundus DSM 44985]
gi|296180590|gb|ADG97496.1| hypothetical protein Srot_1023 [Segniliparus rotundus DSM 44985]
Length=226
Score = 44.7 bits (104), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/143 (28%), Positives = 61/143 (43%), Gaps = 24/143 (16%)
Query 20 TTACSFQATSTQPSTAP------PTSRVDSLIVSIEDVRRIANYEELAAHF-QTDLREPP 72
TT S P+TAP P ++D+L++S+++V RI + ++ A +F Q P
Sbjct 24 TTGASAPQAHADPTTAPSAPSAFPAEKIDTLLLSLDEVNRIVSPDQPAKYFYQKPAENKP 83
Query 73 ---EADTNVP-GPCRVVGSSDRTFGTDWSEFRSAGYHGVTD-DLRPGGPVMVETVSQAIA 127
E T P G +G+ + G DWS +RS Y + D+R +
Sbjct 84 YSQEQPTITPCGKALAIGTV-YSVGKDWSAYRSTEYDATQNVDIR-----------LIVV 131
Query 128 LYPDPSTARGVFHRLESSLAECA 150
YP A F R+ L CA
Sbjct 132 AYPSEQLAEEAFSRIAGGLKSCA 154
>gi|342858155|ref|ZP_08714810.1| LpqA [Mycobacterium colombiense CECT 3035]
gi|342133859|gb|EGT87039.1| LpqA [Mycobacterium colombiense CECT 3035]
Length=213
Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 44/175 (26%), Positives = 74/175 (43%), Gaps = 17/175 (9%)
Query 41 VDSLIVSIEDVRRIANY-EELAAHFQTDLREPPEADT---NVPGPCRVVGSSDRTFGTDW 96
VD++++ +R I E L+ D P + D P CR + + TFG D
Sbjct 46 VDTILLDQSRMRAITGAGEHLSIIPSMDGTSPVDIDALADTAPRECRFIYAETATFGRDL 105
Query 97 SEFRSAGYHGVTDDLRPGGPVMVETVSQAIALYPDPSTARGVFHRLESSLAECAGLHDPY 156
F H T P G + +S+ A Y D TAR F L ++ +CA
Sbjct 106 EAF-----HKTTFQDPPDGAL----ISEGAAAYRDADTARRAFGALVGTVGDCANGSSGQ 156
Query 157 FDFILD-RPDASTVRIGAAGWSHVYRLKSSVFISVGVLGIEPAEPIANVILQTIS 210
++ D DA+++ + G YR+ S + V G A+ ++++++ IS
Sbjct 157 L-YVGDWNADATSLHLRPGGCGRDYRILSVAMLEVTFCGF--AQSVSDIVMTNIS 208
>gi|254820452|ref|ZP_05225453.1| LpqA [Mycobacterium intracellulare ATCC 13950]
Length=198
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 41/178 (24%), Positives = 69/178 (39%), Gaps = 15/178 (8%)
Query 40 RVDSLIVSIEDVRRIANY-EELAAHFQTDLREPPEADT---NVPGPCRVVGSSDRTFGTD 95
VD++++ +R I E L D P D P CR + TFGTD
Sbjct 30 NVDTILLDQSRMRAITGAGEHLTIIPSMDGTSPVNIDALAQTAPRECRFIYDETATFGTD 89
Query 96 WSEFRSAGYHGVTDDLRPGGPVMVETVSQAIALYPDPSTARGVFHRLESSLAECAGLHDP 155
F H T P G + +S+ A Y D AR F+ L ++ +CA
Sbjct 90 LEAF-----HKTTFQDPPDGAL----ISEGAAAYRDAEIARTAFNALVGTVGDCANGSGG 140
Query 156 YFDFILDRPDASTVRIGAAGWSHVYRLKSSVFISVGVLGIEPAEPIANVILQTISDRI 213
D +++ + G YR+ S + V G A+ ++++++ I+ +
Sbjct 141 QLYVGEWNADGTSLHLRPGGCGRDYRILSVAMLEVTFCGF--AQSVSDIVMTNIAANV 196
>gi|317506611|ref|ZP_07964403.1| hypothetical protein HMPREF9336_00773 [Segniliparus rugosus ATCC
BAA-974]
gi|316255120|gb|EFV14398.1| hypothetical protein HMPREF9336_00773 [Segniliparus rugosus ATCC
BAA-974]
Length=232
Score = 40.0 bits (92), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/98 (30%), Positives = 47/98 (48%), Gaps = 15/98 (15%)
Query 59 ELAAHFQTDLREPPEADTNVPGPCRVVGSSDRT--FGTDWSEFRSAGYHGVTDDLRPGGP 116
EL+ H + D E T VP C++VG + +G W++FR V D + P
Sbjct 61 ELSWHDKPDSSEW----TVVPAECQLVGEAGYADQWGQSWTKFRRL----VLADTKSAHP 112
Query 117 VMVETVSQA-----IALYPDPSTARGVFHRLESSLAEC 149
V+TVS+ + YP + AR ++ + S+ A+C
Sbjct 113 PFVDTVSEVWVEEIMVQYPGEAAARNAYNGMTSNFAQC 150
>gi|145223262|ref|YP_001133940.1| hypothetical protein Mflv_2675 [Mycobacterium gilvum PYR-GCK]
gi|145215748|gb|ABP45152.1| serine/threonine protein kinase [Mycobacterium gilvum PYR-GCK]
Length=217
Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 47/183 (26%), Positives = 74/183 (41%), Gaps = 28/183 (15%)
Query 39 SRVDSLIVSIEDVRRIANYEELAAHFQTDLREPPEADTNVPGPC--RVVGSSDRTF-GTD 95
SR+DS++V I+++ I + + D AD + P C V G+ + GTD
Sbjct 36 SRLDSVLVGIDEINSIMGATGMEVTGELDEMSDHSADVSDP-DCLGAVYGAEAPVYEGTD 94
Query 96 WSEFRSAGYHGVTDDLRPGGPVMVETVSQAIALYPDPSTARGVFHRLESSLAECA----G 151
W+ R R G V QA+ LYP+ AR ++ +CA G
Sbjct 95 WTAVRDQV-------AREPGAGNDHWVEQAVVLYPEERNARDFLESSQAVWRDCANNALG 147
Query 152 LHDPYF--------DFILDRPDASTVRIGAAGWS--HVYRLKSSVFISVGVLGIEPAEPI 201
+ D + D +L + T + GA GWS H L S+V + G + +
Sbjct 148 VGDYLWELGAVEAADLMLTQV---TTQEGADGWSCQHALSLVSNVTVEAWACGYDITDEA 204
Query 202 ANV 204
A +
Sbjct 205 ARI 207
>gi|315443722|ref|YP_004076601.1| hypothetical protein Mspyr1_21120 [Mycobacterium sp. Spyr1]
gi|315262025|gb|ADT98766.1| hypothetical protein Mspyr1_21120 [Mycobacterium sp. Spyr1]
Length=237
Score = 39.7 bits (91), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 47/183 (26%), Positives = 74/183 (41%), Gaps = 28/183 (15%)
Query 39 SRVDSLIVSIEDVRRIANYEELAAHFQTDLREPPEADTNVPGPC--RVVGSSDRTF-GTD 95
SR+DS++V I+++ I + + D AD + P C V G+ + GTD
Sbjct 56 SRLDSVLVGIDEINSIMGATGMEVTGELDEMSDHSADVSDP-DCLGAVYGAEAPVYEGTD 114
Query 96 WSEFRSAGYHGVTDDLRPGGPVMVETVSQAIALYPDPSTARGVFHRLESSLAECA----G 151
W+ R R G V QA+ LYP+ AR ++ +CA G
Sbjct 115 WTAVRDQV-------AREPGAGNDHWVEQAVVLYPEERNARDFLESSQAVWRDCANNALG 167
Query 152 LHDPYF--------DFILDRPDASTVRIGAAGWS--HVYRLKSSVFISVGVLGIEPAEPI 201
+ D + D +L + T + GA GWS H L S+V + G + +
Sbjct 168 VGDYLWELGAVEAADLMLTQV---TTQEGADGWSCQHALSLVSNVTVEAWACGYDITDEA 224
Query 202 ANV 204
A +
Sbjct 225 ARI 227
>gi|169628208|ref|YP_001701857.1| hypothetical protein MAB_1115 [Mycobacterium abscessus ATCC 19977]
gi|169240175|emb|CAM61203.1| Hypothetical protein MAB_1115 [Mycobacterium abscessus]
Length=211
Score = 39.3 bits (90), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/119 (23%), Positives = 48/119 (41%), Gaps = 11/119 (9%)
Query 42 DSLIVSIEDVRRIANYEELAAHFQTDLREPPEADTNVPGPCRVV-GSSDRTFGTDWSEFR 100
DSL +++++ + H T P N PC ++ +S G W FR
Sbjct 47 DSLFAGLDEIKSLGFPSADTTHTDTAPVYGPA--INPADPCGMLHATSQGDLGDGWQAFR 104
Query 101 SAGYHGVTDDLRPGGPVMVETVSQAIALYPDPSTARGVFHRLESSLAECAGLHDPYFDF 159
+D +T+ + +A++PD +TA+ F RL + +C L + F
Sbjct 105 QLNVASTSDSR--------QTLHETVAIFPDKATAQAEFQRLTEAFNKCNSLSPSAYSF 155
>gi|289746822|ref|ZP_06506200.1| lipoprotein lpqA [Mycobacterium tuberculosis 02_1987]
gi|289687350|gb|EFD54838.1| lipoprotein lpqA [Mycobacterium tuberculosis 02_1987]
Length=209
Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 46/211 (22%), Positives = 86/211 (41%), Gaps = 19/211 (9%)
Query 11 VIVCCAAIATTACSFQATSTQPST--APPTSRVDSLIVSIEDVRRIA---NYEELAAHFQ 65
+++C A + T AC+ T +T +D + ++ R A + ++L
Sbjct 8 LLLCGATLLTAACTRVVGGTASATFGGDRQGMLDVATILLDQSRMQAITGSGDDLTIIPT 67
Query 66 TDLREPPEAD---TNVPGPCRVVGSSDRTFGTDWSEFRSAGYHGVTDDLRPGGPVMVETV 122
D P + D +P CR + + FG++ F H T RP G + +
Sbjct 68 MDTTYPVDVDDFAQPIPRECRFIYAETAVFGSEIEAF-----HKTTFQDRPDGSL----I 118
Query 123 SQAIALYPDPSTARGVFHRLESSLAECAGLHDPYFDFILDRPDASTVRIGAAGWSHVYRL 182
S+A A Y D TAR F L ++ +CA + +++ I A YR+
Sbjct 119 SEAAAAYRDAGTARRAFDTLAVTVHDCAASPAGWLFVSRWTAGGNSLHIRAGDCGRDYRV 178
Query 183 KSSVFISVGVLGIEPAEPIANVILQTISDRI 213
S+ + V G E ++++++ I+ +
Sbjct 179 LSAALLEVTFCGFP--ESVSDIVMTNIAANV 207
>gi|298526487|ref|ZP_07013896.1| predicted protein [Mycobacterium tuberculosis 94_M4241A]
gi|298496281|gb|EFI31575.1| predicted protein [Mycobacterium tuberculosis 94_M4241A]
Length=142
Score = 38.9 bits (89), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 32/136 (24%), Positives = 58/136 (43%), Gaps = 11/136 (8%)
Query 78 VPGPCRVVGSSDRTFGTDWSEFRSAGYHGVTDDLRPGGPVMVETVSQAIALYPDPSTARG 137
+P CR + + FG++ F H T RP G + +S+A A Y D TAR
Sbjct 16 IPRECRFIYAETAVFGSEIEAF-----HKTTFQDRPDGSL----ISEAAAAYRDAGTARR 66
Query 138 VFHRLESSLAECAGLHDPYFDFILDRPDASTVRIGAAGWSHVYRLKSSVFISVGVLGIEP 197
F L ++ +CA + +++ I A YR+ S+ + V G
Sbjct 67 AFDTLAVTVHDCAASPAGWLFVSRWTAGGNSLHIRAGDCGRDYRVLSAALLEVTFCGFP- 125
Query 198 AEPIANVILQTISDRI 213
E ++++++ I+ +
Sbjct 126 -ESVSDIVMTNIAANV 140
>gi|317506350|ref|ZP_07964162.1| hypothetical protein HMPREF9336_00531 [Segniliparus rugosus ATCC
BAA-974]
gi|316255360|gb|EFV14618.1| hypothetical protein HMPREF9336_00531 [Segniliparus rugosus ATCC
BAA-974]
Length=225
Score = 38.5 bits (88), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 34/130 (27%), Positives = 58/130 (45%), Gaps = 19/130 (14%)
Query 28 TSTQ--PSTAPPTSRVDSLIVSIEDVRRIANYEELAAHF-QTDLREPPEADTNVP----G 80
T+TQ P PP +VD+L++S+++V R F Q + + P + P G
Sbjct 37 TTTQISPGVFPP-EKVDTLLLSLDEVNRTVAPGRATKFFNQAPIEDKPFSQAQPPTTSCG 95
Query 81 PCRVVGSSDRTFGTDWSEFRSAGYHGVTDDLRPGGPVMVETVSQAIALYPDPSTARGVFH 140
+G+ + G +WS FRS+ Y + V + + +A+YP A F
Sbjct 96 KALAIGTV-YSVGENWSSFRSSEYDATQN-------VYIRLI---VAVYPSEQLAEEAFS 144
Query 141 RLESSLAECA 150
R+ + + CA
Sbjct 145 RIGTGVRSCA 154
>gi|254552095|ref|ZP_05142542.1| lipoprotein lpqA [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
Length=209
Score = 38.5 bits (88), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 32/136 (24%), Positives = 58/136 (43%), Gaps = 11/136 (8%)
Query 78 VPGPCRVVGSSDRTFGTDWSEFRSAGYHGVTDDLRPGGPVMVETVSQAIALYPDPSTARG 137
+P CR + + FG++ F H T RP G + +S+A A Y D TAR
Sbjct 83 IPRECRFIYAETAVFGSEIEAF-----HKTTFQDRPDGSL----ISEAAAAYRDAGTARR 133
Query 138 VFHRLESSLAECAGLHDPYFDFILDRPDASTVRIGAAGWSHVYRLKSSVFISVGVLGIEP 197
F L ++ +CA + +++ I A YR+ S+ + V G
Sbjct 134 AFDTLAVTVHDCAASPAGWLFVSRWTAGGNSLHIRAGDCGRDYRVLSAALLEVTFCGFP- 192
Query 198 AEPIANVILQTISDRI 213
E ++++++ I+ +
Sbjct 193 -ESVSDIVMTNIAANV 207
>gi|254365651|ref|ZP_04981696.1| lipoprotein lpqA [Mycobacterium tuberculosis str. Haarlem]
gi|134151164|gb|EBA43209.1| lipoprotein lpqA [Mycobacterium tuberculosis str. Haarlem]
Length=208
Score = 38.5 bits (88), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 32/136 (24%), Positives = 58/136 (43%), Gaps = 11/136 (8%)
Query 78 VPGPCRVVGSSDRTFGTDWSEFRSAGYHGVTDDLRPGGPVMVETVSQAIALYPDPSTARG 137
+P CR + + FG++ F H T RP G + +S+A A Y D TAR
Sbjct 82 IPRECRFIYAETAVFGSEIEAF-----HKTTFQDRPDGSL----ISEAAAAYRDAGTARR 132
Query 138 VFHRLESSLAECAGLHDPYFDFILDRPDASTVRIGAAGWSHVYRLKSSVFISVGVLGIEP 197
F L ++ +CA + +++ I A YR+ S+ + V G
Sbjct 133 AFDTLAVTVHDCAASPAGWLFVSRWTAGGNSLHIRAGDCGRDYRVLSAALLEVTFCGFP- 191
Query 198 AEPIANVILQTISDRI 213
E ++++++ I+ +
Sbjct 192 -ESVSDIVMTNIAANV 206
>gi|15610153|ref|NP_217532.1| lipoprotein LpqA [Mycobacterium tuberculosis H37Rv]
gi|15842574|ref|NP_337611.1| hypothetical protein MT3096 [Mycobacterium tuberculosis CDC1551]
gi|31794193|ref|NP_856686.1| lipoprotein LpqA [Mycobacterium bovis AF2122/97]
65 more sequence titles
Length=209
Score = 38.5 bits (88), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 32/136 (24%), Positives = 58/136 (43%), Gaps = 11/136 (8%)
Query 78 VPGPCRVVGSSDRTFGTDWSEFRSAGYHGVTDDLRPGGPVMVETVSQAIALYPDPSTARG 137
+P CR + + FG++ F H T RP G + +S+A A Y D TAR
Sbjct 83 IPRECRFIYAETAVFGSEIEAF-----HKTTFQDRPDGSL----ISEAAAAYRDAGTARR 133
Query 138 VFHRLESSLAECAGLHDPYFDFILDRPDASTVRIGAAGWSHVYRLKSSVFISVGVLGIEP 197
F L ++ +CA + +++ I A YR+ S+ + V G
Sbjct 134 AFDTLAVTVHDCAASPAGWLFVSRWTAGGNSLHIRAGDCGRDYRVLSAALLEVTFCGFP- 192
Query 198 AEPIANVILQTISDRI 213
E ++++++ I+ +
Sbjct 193 -ESVSDIVMTNIAANV 207
>gi|41409154|ref|NP_961990.1| LpqA [Mycobacterium avium subsp. paratuberculosis K-10]
gi|254776290|ref|ZP_05217806.1| LpqA [Mycobacterium avium subsp. avium ATCC 25291]
gi|41397974|gb|AAS05604.1| LpqA [Mycobacterium avium subsp. paratuberculosis K-10]
gi|336459167|gb|EGO38114.1| hypothetical protein MAPs_06050 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=214
Score = 38.1 bits (87), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 58/136 (43%), Gaps = 13/136 (9%)
Query 79 PGPCRVVGSSDRTFGTDWSEFRSAGYHGVTDDLRPGGPVMVETVSQAIALYPDPSTARGV 138
P CR + + TFG D F H T P G + +S+ A Y D TAR
Sbjct 89 PPECRFIYAETATFGRDLEAF-----HKTTFQDPPDGAL----ISEGAAAYRDADTARRA 139
Query 139 FHRLESSLAECAGLHDPYFDFILD-RPDASTVRIGAAGWSHVYRLKSSVFISVGVLGIEP 197
F L ++ +CA ++ D DA ++ + G YR+ S + V G
Sbjct 140 FGSLVGAVTDCANGSGGQL-YVGDWNADAGSLHLRPGGCGRDYRILSVAMLEVTFCGF-- 196
Query 198 AEPIANVILQTISDRI 213
A+ ++++++ I+ +
Sbjct 197 AQSVSDIVMTNIAANV 212
>gi|291228699|ref|XP_002734311.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
Length=244
Score = 37.7 bits (86), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/74 (32%), Positives = 35/74 (48%), Gaps = 8/74 (10%)
Query 97 SEFRSAGYHGVTDDLRPGGPVMVETVS------QAIALYPDPSTARGVFHRLESSLAECA 150
++S G+ D L+PGG + V QAI D + FH+ +S + +
Sbjct 115 KNWKSVTLRGICDCLKPGGRAFINVVLKSSHGIQAIISGMDIPKWKHYFHKALASTSGIS 174
Query 151 GLHDPYF--DFILD 162
+H+PYF D ILD
Sbjct 175 SIHNPYFEMDLILD 188
>gi|329965025|ref|ZP_08302013.1| PAS domain S-box protein [Bacteroides fluxus YIT 12057]
gi|328524175|gb|EGF51249.1| PAS domain S-box protein [Bacteroides fluxus YIT 12057]
Length=757
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 19/43 (45%), Positives = 23/43 (54%), Gaps = 4/43 (9%)
Query 93 GTDWSEFRSAGYHGVTDDLRPGGPVMVETVSQAIALYPDPSTA 135
G +W EFRS Y+G L+P P MV V Q+I Y D A
Sbjct 622 GYEWWEFRSTAYNG----LKPEAPYMVLGVCQSIQKYKDTEEA 660
>gi|339475760|gb|EGP90851.1| hypothetical protein MYCGRDRAFT_22161 [Mycosphaerella graminicola
IPO323]
Length=512
Score = 37.0 bits (84), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/121 (32%), Positives = 50/121 (42%), Gaps = 24/121 (19%)
Query 23 CSFQATSTQPSTAPPTSRVDSLIVSIEDVRRIANYEELAAHFQTDL---REPPEADTNVP 79
CS + +PST P +R D V E RI E L FQ D +P E+ TN
Sbjct 24 CSRAGFTCKPSTRKPRARADK-GVDAELRERILKLERLVGTFQGDNSVDEKPIESRTNS- 81
Query 80 GPCRVVGSSDRTFGTDWSEFRSAGYHGVTDDLRPGGPVMVETVSQAIALYPDPSTARGVF 139
VG S + T+ AG PG P +VE+ S YP+P A +F
Sbjct 82 -----VGQSSSSAQTN------AG--------SPGSPSIVESASPNTTKYPEPILAMEMF 122
Query 140 H 140
+
Sbjct 123 N 123
>gi|341899196|gb|EGT55131.1| hypothetical protein CAEBREN_03223 [Caenorhabditis brenneri]
Length=1000
Score = 36.6 bits (83), Expect = 2.6, Method: Composition-based stats.
Identities = 23/70 (33%), Positives = 32/70 (46%), Gaps = 8/70 (11%)
Query 22 ACSFQATSTQPSTAPPTSRVDSLIVSIEDVRRIANYEELAAHFQTDLREPPEADTNVPGP 81
A TST P T PT+R+ + ++ N E AA+ + L E P+A V GP
Sbjct 571 ATDIPVTSTCPGTLRPTTRLQT--------TKMENPESKAANLRKKLTEGPDAKEEVKGP 622
Query 82 CRVVGSSDRT 91
V +D T
Sbjct 623 LEVTPPTDVT 632
>gi|289444582|ref|ZP_06434326.1| lipoprotein lpqA [Mycobacterium tuberculosis T46]
gi|289417501|gb|EFD14741.1| lipoprotein lpqA [Mycobacterium tuberculosis T46]
Length=210
Score = 36.2 bits (82), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/117 (27%), Positives = 53/117 (46%), Gaps = 10/117 (8%)
Query 99 FRSAGYHGVTDDLRPGGPVMVETVSQAIALYPDPSTARGVFHRLESSLAECAGLHDPYFD 158
RS +H T RP G + +S+A A Y D TAR F L ++ +CA P
Sbjct 100 LRSKAFHKTTFQDRPDGSL----ISEAAAAYRDAGTARRAFDTLAVTVHDCAA--SPAGW 153
Query 159 FILDRPDA--STVRIGAAGWSHVYRLKSSVFISVGVLGIEPAEPIANVILQTISDRI 213
+ R A +++ I A YR+ S+ + V G E ++++++ I+ +
Sbjct 154 LFVSRWTAGGNSLHIRAGDCGRDYRVLSAALLEVTFCGFP--ESVSDIVMTNIAANV 208
>gi|163755243|ref|ZP_02162363.1| thiol:disulfide interchange protein dsbD, putative [Kordia algicida
OT-1]
gi|161324663|gb|EDP95992.1| thiol:disulfide interchange protein dsbD, putative [Kordia algicida
OT-1]
Length=796
Score = 35.8 bits (81), Expect = 4.5, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 0/50 (0%)
Query 83 RVVGSSDRTFGTDWSEFRSAGYHGVTDDLRPGGPVMVETVSQAIALYPDP 132
++ G+S RT G W EF+ Y+ L V +S+A+A PDP
Sbjct 728 KITGNSIRTIGDKWKEFQQVNYNTNAQPLYVIQDVNGNDISEAVAYTPDP 777
>gi|297197897|ref|ZP_06915294.1| LOW QUALITY PROTEIN: magnesium or manganese-dependent protein
phosphatase [Streptomyces sviceus ATCC 29083]
gi|297146916|gb|EDY61194.2| LOW QUALITY PROTEIN: magnesium or manganese-dependent protein
phosphatase [Streptomyces sviceus ATCC 29083]
Length=586
Score = 35.4 bits (80), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 31/103 (31%), Positives = 48/103 (47%), Gaps = 12/103 (11%)
Query 113 PGGPVMVETVSQAIALYPD------PSTARG--VFHRLESSLAECAGLHDPYFDFILDRP 164
P PV V A+A P P+T G +FH+ SS+++ H P +L+RP
Sbjct 217 PATPVPVRLRRMAVAAAPGLPEPLTPATRSGEVIFHQASSSMSQVLTAHKP---VVLNRP 273
Query 165 DASTVRIGAAGWSHVYRLKSSVFISVGVLGIE-PAEPIANVIL 206
D T+R+ A + R ++ SV L + EP+ V+L
Sbjct 274 DDDTLRMFAPTRQRLERYRALELHSVACLPLMVGGEPVGAVML 316
>gi|289755134|ref|ZP_06514512.1| lipoprotein lpqA [Mycobacterium tuberculosis EAS054]
gi|289695721|gb|EFD63150.1| lipoprotein lpqA [Mycobacterium tuberculosis EAS054]
Length=186
Score = 34.7 bits (78), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 29/113 (26%), Positives = 47/113 (42%), Gaps = 9/113 (7%)
Query 78 VPGPCRVVGSSDRTFGTDWSEFRSAGYHGVTDDLRPGGPVMVETVSQAIALYPDPSTARG 137
+P CR + + FG++ F H T RP G + +S+A A Y D TAR
Sbjct 83 IPRECRFIYAETAVFGSEIEAF-----HKTTFQDRPDGSL----ISEAAAAYRDAGTARR 133
Query 138 VFHRLESSLAECAGLHDPYFDFILDRPDASTVRIGAAGWSHVYRLKSSVFISV 190
F L ++ +CA + +++ I A YR+ S+ + V
Sbjct 134 AFDTLAVTVHDCAASPAGWLFVSRWTAGGNSLHIRAGDCGRDYRVLSAALLEV 186
Lambda K H
0.319 0.133 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 254328062080
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40