BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0838
Length=256
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607978|ref|NP_215353.1| lipoprotein LpqR [Mycobacterium tub... 517 7e-145
gi|289744564|ref|ZP_06503942.1| lipoprotein lpqR [Mycobacterium ... 514 5e-144
gi|340625852|ref|YP_004744304.1| putative lipoprotein LPQR [Myco... 512 2e-143
gi|31792026|ref|NP_854519.1| lipoprotein LpqR [Mycobacterium bov... 503 8e-141
gi|308375266|ref|ZP_07443346.2| lipoprotein lpqR [Mycobacterium ... 499 2e-139
gi|339630903|ref|YP_004722545.1| hypothetical protein MAF_08470 ... 493 9e-138
gi|121636761|ref|YP_976984.1| putative lipoprotein lpqR [Mycobac... 491 4e-137
gi|289573460|ref|ZP_06453687.1| lipoprotein lpqR [Mycobacterium ... 488 4e-136
gi|15840252|ref|NP_335289.1| D-alanyl-D-alanine dipeptidase [Myc... 468 5e-130
gi|308231651|ref|ZP_07413299.2| lipoprotein lpqR [Mycobacterium ... 412 4e-113
gi|240171548|ref|ZP_04750207.1| D-alanyl-D-alanine dipeptidase [... 340 1e-91
gi|183984768|ref|YP_001853059.1| lipoprotein, LpqR [Mycobacteriu... 329 2e-88
gi|118616230|ref|YP_904562.1| lipoprotein, LpqR [Mycobacterium u... 327 8e-88
gi|118465308|ref|YP_880122.1| D-alanyl-D-alanine dipeptidase [My... 320 2e-85
gi|336461100|gb|EGO39979.1| D-alanyl-D-alanine dipeptidase [Myco... 315 3e-84
gi|41406768|ref|NP_959604.1| LpqR [Mycobacterium avium subsp. pa... 315 4e-84
gi|254820507|ref|ZP_05225508.1| LpqR [Mycobacterium intracellula... 312 3e-83
gi|296169458|ref|ZP_06851078.1| D-Ala-D-Ala dipeptidase [Mycobac... 310 1e-82
gi|342860322|ref|ZP_08716973.1| LpqR [Mycobacterium colombiense ... 310 2e-82
gi|169628931|ref|YP_001702580.1| D-alanyl-D-alanine dipeptidase ... 298 5e-79
gi|315442605|ref|YP_004075484.1| D-alanyl-D-alanine dipeptidase ... 292 3e-77
gi|145222167|ref|YP_001132845.1| peptidase M15D, vanX D-ala-D-al... 291 7e-77
gi|262200092|ref|YP_003271300.1| peptidase M15D vanX D-ala-D-ala... 286 2e-75
gi|120406129|ref|YP_955958.1| peptidase M15D, vanX D-ala-D-ala d... 282 3e-74
gi|343926397|ref|ZP_08765902.1| putative D-alanyl-D-alanine dipe... 278 5e-73
gi|333990633|ref|YP_004523247.1| hypothetical protein JDM601_199... 239 3e-61
gi|118471763|ref|YP_890105.1| D-alanyl-D-alanine dipeptidase [My... 237 1e-60
gi|239905138|ref|YP_002951877.1| putative D-alanyl-D-alanine dip... 137 1e-30
gi|108758912|ref|YP_634540.1| D-alanyl-D-alanine dipeptidase [My... 134 2e-29
gi|115373080|ref|ZP_01460382.1| D-alanyl-D-alanine dipeptidase [... 127 1e-27
gi|338532544|ref|YP_004665878.1| D-alanyl-D-alanine dipeptidase ... 127 2e-27
gi|334116656|ref|ZP_08490748.1| peptidase M15D vanX D-ala-D-ala ... 124 2e-26
gi|303245627|ref|ZP_07331910.1| peptidase M15D vanX D-ala-D-ala ... 122 4e-26
gi|283851668|ref|ZP_06368947.1| peptidase M15D vanX D-ala-D-ala ... 121 8e-26
gi|187251245|ref|YP_001875727.1| D-alanyl-D-alanine dipeptidase ... 120 2e-25
gi|344203604|ref|YP_004788747.1| peptidase M15D vanX D-ala-D-ala... 113 4e-23
gi|308185977|ref|YP_003930108.1| D-alanyl-D-alanine dipeptidase ... 112 6e-23
gi|305667513|ref|YP_003863800.1| putative peptidase [Maribacter ... 111 9e-23
gi|338812485|ref|ZP_08624659.1| putative D-alanyl-D-alanine dipe... 111 9e-23
gi|260062547|ref|YP_003195627.1| D-alanyl-D-alanine dipeptidase ... 111 1e-22
gi|189346789|ref|YP_001943318.1| peptidase M15D vanX D-ala-D-ala... 110 2e-22
gi|340619146|ref|YP_004737599.1| D-Ala-D-Ala dipeptidase 5 [Zobe... 110 2e-22
gi|325287488|ref|YP_004263278.1| peptidase M15D vanX D-ala-D-ala... 109 3e-22
gi|300863838|ref|ZP_07108763.1| putative peptidase [Oscillatoria... 109 4e-22
gi|195940492|ref|ZP_03085874.1| D-alanyl-D-alanine dipeptidase [... 109 4e-22
gi|295095816|emb|CBK84906.1| D-alanyl-D-alanine dipeptidase [Ent... 109 5e-22
gi|334124157|ref|ZP_08498166.1| D-Ala-D-Ala dipeptidase [Enterob... 109 5e-22
gi|209523083|ref|ZP_03271640.1| peptidase M15D vanX D-ala-D-ala ... 108 5e-22
gi|229496133|ref|ZP_04389853.1| D-alanyl-D-alanine dipeptidase [... 108 6e-22
gi|223936899|ref|ZP_03628808.1| peptidase M15D vanX D-ala-D-ala ... 108 1e-21
>gi|15607978|ref|NP_215353.1| lipoprotein LpqR [Mycobacterium tuberculosis H37Rv]
gi|148660615|ref|YP_001282138.1| D-alanyl-D-alanine dipeptidase [Mycobacterium tuberculosis H37Ra]
gi|148822047|ref|YP_001286801.1| lipoprotein lpqR [Mycobacterium tuberculosis F11]
39 more sequence titles
Length=256
Score = 517 bits (1331), Expect = 7e-145, Method: Compositional matrix adjust.
Identities = 255/256 (99%), Positives = 256/256 (100%), Gaps = 0/256 (0%)
Query 1 VRLIGRLRLLMVGLVVICGACACDRVSAGRWSESPSATSWPVRPVNTTTPSGPVPPVSEA 60
+RLIGRLRLLMVGLVVICGACACDRVSAGRWSESPSATSWPVRPVNTTTPSGPVPPVSEA
Sbjct 1 MRLIGRLRLLMVGLVVICGACACDRVSAGRWSESPSATSWPVRPVNTTTPSGPVPPVSEA 60
Query 61 ARAAGLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEGLAAAAAVLRPH 120
ARAAGLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEGLAAAAAVLRPH
Sbjct 61 ARAAGLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEGLAAAAAVLRPH 120
Query 121 GQVLVFWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVDVTFASAQRQCPSVR 180
GQVLVFWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVDVTFASAQRQCPSVR
Sbjct 121 GQVLVFWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVDVTFASAQRQCPSVR 180
Query 181 RSGELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQAGGLTVYSGEWWHFD 240
RSGELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQAGGLTVYSGEWWHFD
Sbjct 181 RSGELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQAGGLTVYSGEWWHFD 240
Query 241 GPGAGVDRPILEVPVD 256
GPGAGVDRPILEVPVD
Sbjct 241 GPGAGVDRPILEVPVD 256
>gi|289744564|ref|ZP_06503942.1| lipoprotein lpqR [Mycobacterium tuberculosis 02_1987]
gi|289685092|gb|EFD52580.1| lipoprotein lpqR [Mycobacterium tuberculosis 02_1987]
Length=256
Score = 514 bits (1323), Expect = 5e-144, Method: Compositional matrix adjust.
Identities = 254/256 (99%), Positives = 255/256 (99%), Gaps = 0/256 (0%)
Query 1 VRLIGRLRLLMVGLVVICGACACDRVSAGRWSESPSATSWPVRPVNTTTPSGPVPPVSEA 60
+RLIGRLRLLMVGLVVICGACACDRVSAGRWSESPSATSWPVRPVNTTTPSGPVPPVSEA
Sbjct 1 MRLIGRLRLLMVGLVVICGACACDRVSAGRWSESPSATSWPVRPVNTTTPSGPVPPVSEA 60
Query 61 ARAAGLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEGLAAAAAVLRPH 120
ARAAGLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEGLAAAAAVLRPH
Sbjct 61 ARAAGLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEGLAAAAAVLRPH 120
Query 121 GQVLVFWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVDVTFASAQRQCPSVR 180
GQVLVFWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVDVTFASAQRQCPSVR
Sbjct 121 GQVLVFWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVDVTFASAQRQCPSVR 180
Query 181 RSGELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQAGGLTVYSGEWWHFD 240
RSGELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAHL AAMQAGGLTVYSGEWWHFD
Sbjct 181 RSGELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLGAAMQAGGLTVYSGEWWHFD 240
Query 241 GPGAGVDRPILEVPVD 256
GPGAGVDRPILEVPVD
Sbjct 241 GPGAGVDRPILEVPVD 256
>gi|340625852|ref|YP_004744304.1| putative lipoprotein LPQR [Mycobacterium canettii CIPT 140010059]
gi|340004042|emb|CCC43178.1| putative conserved lipoprotein LPQR [Mycobacterium canettii CIPT
140010059]
Length=256
Score = 512 bits (1318), Expect = 2e-143, Method: Compositional matrix adjust.
Identities = 253/256 (99%), Positives = 254/256 (99%), Gaps = 0/256 (0%)
Query 1 VRLIGRLRLLMVGLVVICGACACDRVSAGRWSESPSATSWPVRPVNTTTPSGPVPPVSEA 60
+RLIGRLRLLMVGLVVICG CACDRVSAGRWSESPSATSWPVRPVNTTTPSGPVPPVSEA
Sbjct 1 MRLIGRLRLLMVGLVVICGPCACDRVSAGRWSESPSATSWPVRPVNTTTPSGPVPPVSEA 60
Query 61 ARAAGLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEGLAAAAAVLRPH 120
ARAAGLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEGLAAAAAVLRPH
Sbjct 61 ARAAGLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEGLAAAAAVLRPH 120
Query 121 GQVLVFWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVDVTFASAQRQCPSVR 180
GQVLVFWDCYRPHDVQVRMFDVVPNPAWVARPGKYA SHEAGRSVDVTFASAQRQCPSVR
Sbjct 121 GQVLVFWDCYRPHDVQVRMFDVVPNPAWVARPGKYARSHEAGRSVDVTFASAQRQCPSVR 180
Query 181 RSGELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQAGGLTVYSGEWWHFD 240
RSGELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQAGGLTVYSGEWWHFD
Sbjct 181 RSGELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQAGGLTVYSGEWWHFD 240
Query 241 GPGAGVDRPILEVPVD 256
GPGAGVDRPILEVPVD
Sbjct 241 GPGAGVDRPILEVPVD 256
>gi|31792026|ref|NP_854519.1| lipoprotein LpqR [Mycobacterium bovis AF2122/97]
gi|31617613|emb|CAD93723.1| PROBABLE CONSERVED LIPOPROTEIN LPQR [Mycobacterium bovis AF2122/97]
Length=258
Score = 503 bits (1296), Expect = 8e-141, Method: Compositional matrix adjust.
Identities = 255/258 (99%), Positives = 256/258 (99%), Gaps = 2/258 (0%)
Query 1 VRLIGRLRLLMVGLVVICGACACDRVSAGRWSESPSATSWPVRPVNTTTPSGPVPPVSEA 60
+RLIGRLRLLMVGLVVICGACACDRVSAGRWSESPSATSWPVRPVNTTTPSGPVPPVSEA
Sbjct 1 MRLIGRLRLLMVGLVVICGACACDRVSAGRWSESPSATSWPVRPVNTTTPSGPVPPVSEA 60
Query 61 ARAAGLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEGLAAAAAVLRPH 120
ARAAGLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEGLAAAAAVLRPH
Sbjct 61 ARAAGLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEGLAAAAAVLRPH 120
Query 121 GQVLVFWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVDVTFASAQRQCPSVR 180
GQVLVFWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVDVTFASAQRQCPSVR
Sbjct 121 GQVLVFWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVDVTFASAQRQCPSVR 180
Query 181 RSGELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQAGGLTVYSGEWWHFD 240
RSGELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQAGGLTVYSGEWWHFD
Sbjct 181 RSGELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQAGGLTVYSGEWWHFD 240
Query 241 --GPGAGVDRPILEVPVD 256
GPGAGVDRPILEVPVD
Sbjct 241 GPGPGAGVDRPILEVPVD 258
>gi|308375266|ref|ZP_07443346.2| lipoprotein lpqR [Mycobacterium tuberculosis SUMu007]
gi|308346829|gb|EFP35680.1| lipoprotein lpqR [Mycobacterium tuberculosis SUMu007]
Length=246
Score = 499 bits (1285), Expect = 2e-139, Method: Compositional matrix adjust.
Identities = 246/246 (100%), Positives = 246/246 (100%), Gaps = 0/246 (0%)
Query 11 MVGLVVICGACACDRVSAGRWSESPSATSWPVRPVNTTTPSGPVPPVSEAARAAGLVDVR 70
MVGLVVICGACACDRVSAGRWSESPSATSWPVRPVNTTTPSGPVPPVSEAARAAGLVDVR
Sbjct 1 MVGLVVICGACACDRVSAGRWSESPSATSWPVRPVNTTTPSGPVPPVSEAARAAGLVDVR 60
Query 71 GVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEGLAAAAAVLRPHGQVLVFWDCY 130
GVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEGLAAAAAVLRPHGQVLVFWDCY
Sbjct 61 GVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEGLAAAAAVLRPHGQVLVFWDCY 120
Query 131 RPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVDVTFASAQRQCPSVRRSGELCLADM 190
RPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVDVTFASAQRQCPSVRRSGELCLADM
Sbjct 121 RPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVDVTFASAQRQCPSVRRSGELCLADM 180
Query 191 GTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQAGGLTVYSGEWWHFDGPGAGVDRPI 250
GTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQAGGLTVYSGEWWHFDGPGAGVDRPI
Sbjct 181 GTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQAGGLTVYSGEWWHFDGPGAGVDRPI 240
Query 251 LEVPVD 256
LEVPVD
Sbjct 241 LEVPVD 246
>gi|339630903|ref|YP_004722545.1| hypothetical protein MAF_08470 [Mycobacterium africanum GM041182]
gi|339330259|emb|CCC25919.1| putative conserved lipoprotein LPQR [Mycobacterium africanum
GM041182]
Length=245
Score = 493 bits (1270), Expect = 9e-138, Method: Compositional matrix adjust.
Identities = 243/245 (99%), Positives = 244/245 (99%), Gaps = 0/245 (0%)
Query 1 VRLIGRLRLLMVGLVVICGACACDRVSAGRWSESPSATSWPVRPVNTTTPSGPVPPVSEA 60
+RLIGRLRLLMVGLVVICGACACDRVSAGRWSESPSATSWPVRPVNTTTPSGPVPPVSEA
Sbjct 1 MRLIGRLRLLMVGLVVICGACACDRVSAGRWSESPSATSWPVRPVNTTTPSGPVPPVSEA 60
Query 61 ARAAGLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEGLAAAAAVLRPH 120
ARAAGLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEGLAAAAAVLRPH
Sbjct 61 ARAAGLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEGLAAAAAVLRPH 120
Query 121 GQVLVFWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVDVTFASAQRQCPSVR 180
GQVLVFWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVDVTFASAQRQCPSVR
Sbjct 121 GQVLVFWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVDVTFASAQRQCPSVR 180
Query 181 RSGELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQAGGLTVYSGEWWHFD 240
RSGELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQAGGLTVYSGEWWHFD
Sbjct 181 RSGELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQAGGLTVYSGEWWHFD 240
Query 241 GPGAG 245
GPG G
Sbjct 241 GPGPG 245
>gi|121636761|ref|YP_976984.1| putative lipoprotein lpqR [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|224989232|ref|YP_002643919.1| putative lipoprotein [Mycobacterium bovis BCG str. Tokyo 172]
gi|121492408|emb|CAL70876.1| Probable conserved lipoprotein lpqR [Mycobacterium bovis BCG
str. Pasteur 1173P2]
gi|224772345|dbj|BAH25151.1| putative lipoprotein [Mycobacterium bovis BCG str. Tokyo 172]
gi|341600777|emb|CCC63448.1| probable conserved lipoprotein lpqR [Mycobacterium bovis BCG
str. Moreau RDJ]
Length=260
Score = 491 bits (1264), Expect = 4e-137, Method: Compositional matrix adjust.
Identities = 255/260 (99%), Positives = 256/260 (99%), Gaps = 4/260 (1%)
Query 1 VRLIGRLRLLMVGLVVICGACACDRVSAGRWSESPSATSWPVRPVNTTTPSGPVPPVSEA 60
+RLIGRLRLLMVGLVVICGACACDRVSAGRWSESPSATSWPVRPVNTTTPSGPVPPVSEA
Sbjct 1 MRLIGRLRLLMVGLVVICGACACDRVSAGRWSESPSATSWPVRPVNTTTPSGPVPPVSEA 60
Query 61 ARAAGLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEGLAAAAAVLRPH 120
ARAAGLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEGLAAAAAVLRPH
Sbjct 61 ARAAGLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEGLAAAAAVLRPH 120
Query 121 GQVLVFWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVDVTFASAQRQCPSVR 180
GQVLVFWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVDVTFASAQRQCPSVR
Sbjct 121 GQVLVFWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVDVTFASAQRQCPSVR 180
Query 181 RSGELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQAGGLTVYSGEWWHFD 240
RSGELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQAGGLTVYSGEWWHFD
Sbjct 181 RSGELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQAGGLTVYSGEWWHFD 240
Query 241 ----GPGAGVDRPILEVPVD 256
GPGAGVDRPILEVPVD
Sbjct 241 GPGPGPGAGVDRPILEVPVD 260
>gi|289573460|ref|ZP_06453687.1| lipoprotein lpqR [Mycobacterium tuberculosis K85]
gi|289537891|gb|EFD42469.1| lipoprotein lpqR [Mycobacterium tuberculosis K85]
Length=258
Score = 488 bits (1256), Expect = 4e-136, Method: Compositional matrix adjust.
Identities = 253/258 (99%), Positives = 254/258 (99%), Gaps = 4/258 (1%)
Query 3 LIGRLRLLMVGLVVICGACACDRVSAGRWSESPSATSWPVRPVNTTTPSGPVPPVSEAAR 62
+IGRLRLLMVGLVVICGACACDRVSAGRWSESPSATSWPVRPVNTTTPSGPVPPVSEAAR
Sbjct 1 MIGRLRLLMVGLVVICGACACDRVSAGRWSESPSATSWPVRPVNTTTPSGPVPPVSEAAR 60
Query 63 AAGLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEGLAAAAAVLRPHGQ 122
AAGLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEGLAAAAAVLRPHGQ
Sbjct 61 AAGLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEGLAAAAAVLRPHGQ 120
Query 123 VLVFWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVDVTFASAQRQCPSVRRS 182
VLVFWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVDVTFASAQRQCPSVRRS
Sbjct 121 VLVFWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVDVTFASAQRQCPSVRRS 180
Query 183 GELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQAGGLTVYSGEWWHFD-- 240
GELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQAGGLTVYSGEWWHFD
Sbjct 181 GELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQAGGLTVYSGEWWHFDGP 240
Query 241 --GPGAGVDRPILEVPVD 256
GPGAGVDRPILEVPVD
Sbjct 241 GPGPGAGVDRPILEVPVD 258
>gi|15840252|ref|NP_335289.1| D-alanyl-D-alanine dipeptidase [Mycobacterium tuberculosis CDC1551]
gi|13880411|gb|AAK45103.1| D-alanyl-D-alanine dipeptidase [Mycobacterium tuberculosis CDC1551]
Length=231
Score = 468 bits (1203), Expect = 5e-130, Method: Compositional matrix adjust.
Identities = 230/231 (99%), Positives = 231/231 (100%), Gaps = 0/231 (0%)
Query 26 VSAGRWSESPSATSWPVRPVNTTTPSGPVPPVSEAARAAGLVDVRGVVPDAAIDLRYATA 85
+SAGRWSESPSATSWPVRPVNTTTPSGPVPPVSEAARAAGLVDVRGVVPDAAIDLRYATA
Sbjct 1 MSAGRWSESPSATSWPVRPVNTTTPSGPVPPVSEAARAAGLVDVRGVVPDAAIDLRYATA 60
Query 86 NNFTGTQLYPPGARCLVHESMAEGLAAAAAVLRPHGQVLVFWDCYRPHDVQVRMFDVVPN 145
NNFTGTQLYPPGARCLVHESMAEGLAAAAAVLRPHGQVLVFWDCYRPHDVQVRMFDVVPN
Sbjct 61 NNFTGTQLYPPGARCLVHESMAEGLAAAAAVLRPHGQVLVFWDCYRPHDVQVRMFDVVPN 120
Query 146 PAWVARPGKYAHSHEAGRSVDVTFASAQRQCPSVRRSGELCLADMGTDFDDFSSRATAFA 205
PAWVARPGKYAHSHEAGRSVDVTFASAQRQCPSVRRSGELCLADMGTDFDDFSSRATAFA
Sbjct 121 PAWVARPGKYAHSHEAGRSVDVTFASAQRQCPSVRRSGELCLADMGTDFDDFSSRATAFA 180
Query 206 TQGVSAEAQANRAHLRAAMQAGGLTVYSGEWWHFDGPGAGVDRPILEVPVD 256
TQGVSAEAQANRAHLRAAMQAGGLTVYSGEWWHFDGPGAGVDRPILEVPVD
Sbjct 181 TQGVSAEAQANRAHLRAAMQAGGLTVYSGEWWHFDGPGAGVDRPILEVPVD 231
>gi|308231651|ref|ZP_07413299.2| lipoprotein lpqR [Mycobacterium tuberculosis SUMu001]
gi|308371775|ref|ZP_07426192.2| lipoprotein lpqR [Mycobacterium tuberculosis SUMu004]
gi|308374113|ref|ZP_07434911.2| lipoprotein lpqR [Mycobacterium tuberculosis SUMu006]
16 more sequence titles
Length=203
Score = 412 bits (1058), Expect = 4e-113, Method: Compositional matrix adjust.
Identities = 202/203 (99%), Positives = 203/203 (100%), Gaps = 0/203 (0%)
Query 54 VPPVSEAARAAGLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEGLAAA 113
+PPVSEAARAAGLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEGLAAA
Sbjct 1 MPPVSEAARAAGLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEGLAAA 60
Query 114 AAVLRPHGQVLVFWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVDVTFASAQ 173
AAVLRPHGQVLVFWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVDVTFASAQ
Sbjct 61 AAVLRPHGQVLVFWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVDVTFASAQ 120
Query 174 RQCPSVRRSGELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQAGGLTVYS 233
RQCPSVRRSGELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQAGGLTVYS
Sbjct 121 RQCPSVRRSGELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQAGGLTVYS 180
Query 234 GEWWHFDGPGAGVDRPILEVPVD 256
GEWWHFDGPGAGVDRPILEVPVD
Sbjct 181 GEWWHFDGPGAGVDRPILEVPVD 203
>gi|240171548|ref|ZP_04750207.1| D-alanyl-D-alanine dipeptidase [Mycobacterium kansasii ATCC 12478]
Length=248
Score = 340 bits (872), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 171/220 (78%), Positives = 184/220 (84%), Gaps = 1/220 (0%)
Query 38 TSWPVRPVNTTTPSGP-VPPVSEAARAAGLVDVRGVVPDAAIDLRYATANNFTGTQLYPP 96
TS PVRPV TT PSGP VPPVS+AARAAG VDVR V+PDA IDLRYAT NNFT TQLYP
Sbjct 29 TSLPVRPVGTTVPSGPGVPPVSDAARAAGFVDVRSVLPDAVIDLRYATTNNFTHTQLYPA 88
Query 97 GARCLVHESMAEGLAAAAAVLRPHGQVLVFWDCYRPHDVQVRMFDVVPNPAWVARPGKYA 156
ARCLVH+SMA+GLAAAA LRP G VLVFWDCYRPH+ QV+MF+ VPNPAWVARPG YA
Sbjct 89 DARCLVHQSMAQGLAAAAVALRPQGHVLVFWDCYRPHEAQVKMFNAVPNPAWVARPGPYA 148
Query 157 HSHEAGRSVDVTFASAQRQCPSVRRSGELCLADMGTDFDDFSSRATAFATQGVSAEAQAN 216
SHEAGRSVDVTF S Q+ CP+ R+ LCLADMGTDFDDFSSRATAFATQGV+ A+AN
Sbjct 149 RSHEAGRSVDVTFTSPQQSCPAERQVHGLCLADMGTDFDDFSSRATAFATQGVTVAARAN 208
Query 217 RAHLRAAMQAGGLTVYSGEWWHFDGPGAGVDRPILEVPVD 256
R LR AM GGL VYSGEWWHFDGPGA VDRP+L VPVD
Sbjct 209 RTALREAMNYGGLNVYSGEWWHFDGPGADVDRPVLNVPVD 248
>gi|183984768|ref|YP_001853059.1| lipoprotein, LpqR [Mycobacterium marinum M]
gi|183178094|gb|ACC43204.1| conserved lipoprotein, LpqR [Mycobacterium marinum M]
Length=261
Score = 329 bits (844), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 178/260 (69%), Positives = 193/260 (75%), Gaps = 12/260 (4%)
Query 8 RLLMVGLVVICG-ACACDRVSAGRWSESPSATSWPVRPVNTT----------TPSGPVPP 56
R+ +V CG AC +G W+ SP +S P PV T+ P+G VPP
Sbjct 3 RVGAAAALVACGVACGITAAPSGVWT-SPGGSSIPSPPVVTSAVRAVATTASVPAGSVPP 61
Query 57 VSEAARAAGLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEGLAAAAAV 116
VS AA AAGLVDVR VVPDA IDLRYAT NNFT TQLYP ARCLVHESMA GL AAAA
Sbjct 62 VSAAAAAAGLVDVRSVVPDAIIDLRYATTNNFTRTQLYPADARCLVHESMAPGLTAAAAA 121
Query 117 LRPHGQVLVFWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVDVTFASAQRQC 176
LRP GQ LVFWDCYRPHDVQV+MF VVPNPAWVARPG+YA SHEAGRSVDVT+AS QC
Sbjct 122 LRPQGQALVFWDCYRPHDVQVKMFQVVPNPAWVARPGQYARSHEAGRSVDVTYASVSPQC 181
Query 177 PSVRRSGELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQAGGLTVYSGEW 236
P R+ +CLADMGTDFDDFS+RA AFAT+GVS AQA R LR AM GGL+VYSGEW
Sbjct 182 PPQRQISGICLADMGTDFDDFSARAKAFATEGVSEAAQAGRKRLRDAMNYGGLSVYSGEW 241
Query 237 WHFDGPGAGVDRPILEVPVD 256
WHFDGPGAGVDRPIL PVD
Sbjct 242 WHFDGPGAGVDRPILNAPVD 261
>gi|118616230|ref|YP_904562.1| lipoprotein, LpqR [Mycobacterium ulcerans Agy99]
gi|118568340|gb|ABL03091.1| conserved lipoprotein, LpqR [Mycobacterium ulcerans Agy99]
Length=269
Score = 327 bits (839), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 176/258 (69%), Positives = 191/258 (75%), Gaps = 11/258 (4%)
Query 9 LLMVGLVVICGACACDRVSAGRWSESPSATSWPVRPVNTT----------TPSGPVPPVS 58
L VG AC V +G W+ SP +S P PV T+ P+G VPPVS
Sbjct 13 LRRVGAAAALVACGITAVPSGVWT-SPGGSSIPSPPVVTSAVRAVATTASVPAGSVPPVS 71
Query 59 EAARAAGLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEGLAAAAAVLR 118
AA AAGLVDVR VVPDA IDLRYAT NNFT TQLYP ARCLVHESMA GL AAAA LR
Sbjct 72 AAAAAAGLVDVRSVVPDAIIDLRYATTNNFTRTQLYPADARCLVHESMAPGLTAAAAALR 131
Query 119 PHGQVLVFWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVDVTFASAQRQCPS 178
P GQ LVFWDCYRPHDVQV+MF VVPNPAWVARPG+YA SHEAGRSVDVT+A+ QCP
Sbjct 132 PQGQALVFWDCYRPHDVQVKMFQVVPNPAWVARPGQYARSHEAGRSVDVTYANVSPQCPP 191
Query 179 VRRSGELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQAGGLTVYSGEWWH 238
R+ +CLADMGTDFDDFS+RA AFAT+GVS AQA R LR AM GGL+VYSGEWWH
Sbjct 192 QRQISGICLADMGTDFDDFSARAKAFATEGVSEAAQAGRKRLRDAMNYGGLSVYSGEWWH 251
Query 239 FDGPGAGVDRPILEVPVD 256
FDGPGAGVDRPIL PV+
Sbjct 252 FDGPGAGVDRPILNAPVE 269
>gi|118465308|ref|YP_880122.1| D-alanyl-D-alanine dipeptidase [Mycobacterium avium 104]
gi|254773744|ref|ZP_05215260.1| D-alanyl-D-alanine dipeptidase [Mycobacterium avium subsp. avium
ATCC 25291]
gi|118166595|gb|ABK67492.1| D-alanyl-D-alanine dipeptidase [Mycobacterium avium 104]
Length=232
Score = 320 bits (819), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 160/210 (77%), Positives = 177/210 (85%), Gaps = 0/210 (0%)
Query 47 TTTPSGPVPPVSEAARAAGLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESM 106
T S VPPVSEAA+AAG VD+R V+PDA +DLRYAT+NNFT TQLYP ARCLVH+SM
Sbjct 23 TAEASPDVPPVSEAAKAAGFVDIRSVIPDAVLDLRYATSNNFTHTQLYPSDARCLVHQSM 82
Query 107 AEGLAAAAAVLRPHGQVLVFWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVD 166
A GLAAAA LRP G +LVFWDCYRPHDVQV+MF +VPNPAWVARPG YA SHE+GRSVD
Sbjct 83 APGLAAAAGALRPQGHLLVFWDCYRPHDVQVKMFSLVPNPAWVARPGAYARSHESGRSVD 142
Query 167 VTFASAQRQCPSVRRSGELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQA 226
VTF +AQ+ C S +G LCLADMGTDFDDF+SRATAF TQG+SA+A ANRA LR AM
Sbjct 143 VTFTTAQQACSSGLHAGGLCLADMGTDFDDFTSRATAFNTQGISADAVANRAALRNAMNY 202
Query 227 GGLTVYSGEWWHFDGPGAGVDRPILEVPVD 256
GGLTVYSGEWWHFDGPGAGVD+PIL VPVD
Sbjct 203 GGLTVYSGEWWHFDGPGAGVDQPILNVPVD 232
>gi|336461100|gb|EGO39979.1| D-alanyl-D-alanine dipeptidase [Mycobacterium avium subsp. paratuberculosis
S397]
Length=232
Score = 315 bits (808), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 158/210 (76%), Positives = 176/210 (84%), Gaps = 0/210 (0%)
Query 47 TTTPSGPVPPVSEAARAAGLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESM 106
T S VPPVS+AA+AAG VD+R V+PDA +DLRYAT+NNFT TQLYP ARCLVH+SM
Sbjct 23 TAEASPDVPPVSDAAKAAGFVDIRSVIPDAVLDLRYATSNNFTHTQLYPSDARCLVHQSM 82
Query 107 AEGLAAAAAVLRPHGQVLVFWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVD 166
A GLAAAA LRP G +LVFWDCYRPHDVQV+MF +VPNPAWVARPG YA SHE+GRSVD
Sbjct 83 APGLAAAAGALRPQGHLLVFWDCYRPHDVQVKMFSLVPNPAWVARPGAYARSHESGRSVD 142
Query 167 VTFASAQRQCPSVRRSGELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQA 226
VTF +AQ+ C S +G LCLADMGTDFDDF+SRATAF TQG+SA+A ANRA LR AM
Sbjct 143 VTFTTAQQPCSSGLHAGGLCLADMGTDFDDFTSRATAFNTQGISADAVANRAALRNAMNY 202
Query 227 GGLTVYSGEWWHFDGPGAGVDRPILEVPVD 256
GGL VYSGEWWHFDGPGAGVD+PIL VPVD
Sbjct 203 GGLKVYSGEWWHFDGPGAGVDQPILNVPVD 232
>gi|41406768|ref|NP_959604.1| LpqR [Mycobacterium avium subsp. paratuberculosis K-10]
gi|41395118|gb|AAS02987.1| LpqR [Mycobacterium avium subsp. paratuberculosis K-10]
Length=245
Score = 315 bits (807), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 158/210 (76%), Positives = 176/210 (84%), Gaps = 0/210 (0%)
Query 47 TTTPSGPVPPVSEAARAAGLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESM 106
T S VPPVS+AA+AAG VD+R V+PDA +DLRYAT+NNFT TQLYP ARCLVH+SM
Sbjct 36 TAEASPDVPPVSDAAKAAGFVDIRSVIPDAVLDLRYATSNNFTHTQLYPSDARCLVHQSM 95
Query 107 AEGLAAAAAVLRPHGQVLVFWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVD 166
A GLAAAA LRP G +LVFWDCYRPHDVQV+MF +VPNPAWVARPG YA SHE+GRSVD
Sbjct 96 APGLAAAAGALRPQGHLLVFWDCYRPHDVQVKMFSLVPNPAWVARPGAYARSHESGRSVD 155
Query 167 VTFASAQRQCPSVRRSGELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQA 226
VTF +AQ+ C S +G LCLADMGTDFDDF+SRATAF TQG+SA+A ANRA LR AM
Sbjct 156 VTFTTAQQPCSSGLHAGGLCLADMGTDFDDFTSRATAFNTQGISADAVANRAALRNAMNY 215
Query 227 GGLTVYSGEWWHFDGPGAGVDRPILEVPVD 256
GGL VYSGEWWHFDGPGAGVD+PIL VPVD
Sbjct 216 GGLKVYSGEWWHFDGPGAGVDQPILNVPVD 245
>gi|254820507|ref|ZP_05225508.1| LpqR [Mycobacterium intracellulare ATCC 13950]
Length=230
Score = 312 bits (800), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 160/207 (78%), Positives = 176/207 (86%), Gaps = 1/207 (0%)
Query 51 SGP-VPPVSEAARAAGLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEG 109
+GP VPPVS+AARAAG VDVR VVPDA +DLRYAT NNFT TQLYP ARCLVH+SMA G
Sbjct 24 AGPDVPPVSDAARAAGFVDVRTVVPDAVLDLRYATTNNFTHTQLYPSDARCLVHQSMAPG 83
Query 110 LAAAAAVLRPHGQVLVFWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVDVTF 169
LAAAA LRP G +LVFWDCYRPHDVQV+MF +VPNPAWVARPG+YA SHE+GRSVDVTF
Sbjct 84 LAAAAGALRPQGHLLVFWDCYRPHDVQVKMFSLVPNPAWVARPGQYARSHESGRSVDVTF 143
Query 170 ASAQRQCPSVRRSGELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQAGGL 229
+ Q+ C S +G LCLADMGTDFDDF+SRATAF TQG+SA+A+ANRA LR AM GGL
Sbjct 144 TTPQQPCTSGLHAGGLCLADMGTDFDDFTSRATAFNTQGISADARANRAALRNAMNYGGL 203
Query 230 TVYSGEWWHFDGPGAGVDRPILEVPVD 256
VYSGEWWHFDGPGAGVD PIL VPVD
Sbjct 204 KVYSGEWWHFDGPGAGVDLPILNVPVD 230
>gi|296169458|ref|ZP_06851078.1| D-Ala-D-Ala dipeptidase [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295895724|gb|EFG75419.1| D-Ala-D-Ala dipeptidase [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=241
Score = 310 bits (795), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 158/210 (76%), Positives = 172/210 (82%), Gaps = 1/210 (0%)
Query 48 TTPSGP-VPPVSEAARAAGLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESM 106
T GP VPPVS+AARAAG VDVR VV DA IDLRYAT NNFT QLYP ARCLVH+SM
Sbjct 32 TAHGGPDVPPVSDAARAAGFVDVRTVVSDAIIDLRYATTNNFTHRQLYPSDARCLVHQSM 91
Query 107 AEGLAAAAAVLRPHGQVLVFWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVD 166
A GLAAAA LRP G +LVFWDCYRPHDVQV+MF++VPNPAWVARPG YA SHE+GRSVD
Sbjct 92 APGLAAAATALRPQGHLLVFWDCYRPHDVQVKMFELVPNPAWVARPGPYARSHESGRSVD 151
Query 167 VTFASAQRQCPSVRRSGELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQA 226
VTF +AQ+ C S + LCLADMGTDFDDFS RA AFATQGVS +AQANRA LR AM+
Sbjct 152 VTFTTAQQPCASGLHADGLCLADMGTDFDDFSPRAHAFATQGVSVDAQANRAALRNAMKY 211
Query 227 GGLTVYSGEWWHFDGPGAGVDRPILEVPVD 256
GGL+ Y GEWWHFDGPGAG D PIL+VPVD
Sbjct 212 GGLSAYLGEWWHFDGPGAGTDLPILDVPVD 241
>gi|342860322|ref|ZP_08716973.1| LpqR [Mycobacterium colombiense CECT 3035]
gi|342131977|gb|EGT85218.1| LpqR [Mycobacterium colombiense CECT 3035]
Length=232
Score = 310 bits (793), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 157/207 (76%), Positives = 176/207 (86%), Gaps = 1/207 (0%)
Query 51 SGP-VPPVSEAARAAGLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEG 109
+GP VPPVS+AARAAG VD+R VVPDA +DLRYAT NNFT TQLYP ARCLVH+SMA G
Sbjct 26 AGPDVPPVSDAARAAGFVDIRTVVPDAVLDLRYATTNNFTHTQLYPSDARCLVHQSMAPG 85
Query 110 LAAAAAVLRPHGQVLVFWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVDVTF 169
LAAAA LRP G +LVFWDCYRPHDVQV+MF++VPNPAWVARPG YA SHE+GRSVDVTF
Sbjct 86 LAAAAGALRPQGHLLVFWDCYRPHDVQVKMFNLVPNPAWVARPGPYARSHESGRSVDVTF 145
Query 170 ASAQRQCPSVRRSGELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQAGGL 229
+ Q+ C S + +G LCLADMGTDFDDF+SRATAF TQG+S +A A+R LRAAM GGL
Sbjct 146 TTPQQPCQSGQHAGGLCLADMGTDFDDFTSRATAFNTQGISTDAVASRGALRAAMNYGGL 205
Query 230 TVYSGEWWHFDGPGAGVDRPILEVPVD 256
VYSGEWWHFDGPGAGVD+PIL VPVD
Sbjct 206 KVYSGEWWHFDGPGAGVDQPILNVPVD 232
>gi|169628931|ref|YP_001702580.1| D-alanyl-D-alanine dipeptidase [Mycobacterium abscessus ATCC
19977]
gi|169240898|emb|CAM61926.1| Probable D-alanyl-D-alanine dipeptidase [Mycobacterium abscessus]
Length=222
Score = 298 bits (763), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 149/203 (74%), Positives = 161/203 (80%), Gaps = 12/203 (5%)
Query 54 VPPVSEAARAAGLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEGLAAA 113
+PPVSEAARAAGLVDVR VVPDA IDLRYAT NNFTG QLYP GARCLVHESMA GL A
Sbjct 32 IPPVSEAARAAGLVDVRTVVPDAVIDLRYATTNNFTGVQLYPAGARCLVHESMAPGLKTA 91
Query 114 AAVLRPHGQVLVFWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVDVTFASAQ 173
A LR +G+ LVFWDCYRPH+VQVRMF VVPNP WVA+PG+YA SHEAGRSVDVT A+A+
Sbjct 92 ADTLRTNGERLVFWDCYRPHEVQVRMFQVVPNPNWVAKPGQYARSHEAGRSVDVTLANAR 151
Query 174 RQCPSVRRSGELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQAGGLTVYS 233
L DMGT FDDFS R+ AFAT+GVS + QANRA LRAAMQAGGL VYS
Sbjct 152 ------------GLVDMGTGFDDFSPRSLAFATEGVSPDQQANRARLRAAMQAGGLQVYS 199
Query 234 GEWWHFDGPGAGVDRPILEVPVD 256
GEWWHFDGPGAG RP L PV+
Sbjct 200 GEWWHFDGPGAGEGRPFLNAPVN 222
>gi|315442605|ref|YP_004075484.1| D-alanyl-D-alanine dipeptidase [Mycobacterium sp. Spyr1]
gi|315260908|gb|ADT97649.1| D-alanyl-D-alanine dipeptidase [Mycobacterium sp. Spyr1]
Length=221
Score = 292 bits (748), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 146/210 (70%), Positives = 162/210 (78%), Gaps = 12/210 (5%)
Query 46 NTTTPSGPVPPVSEAARAAGLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHES 105
+ T + P+PP+S+AARAAG VDVR VVPDA IDLRYAT+NNF G LYPP ARCLVHES
Sbjct 23 SATGSAAPIPPLSDAARAAGFVDVRAVVPDAVIDLRYATSNNFVGIPLYPPTARCLVHES 82
Query 106 MAEGLAAAAAVLRPHGQVLVFWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSV 165
+A GLA AA +LR G+ LVFWDCYRPH VQ RMF+VVPNPAWVARPG YA SH AGRSV
Sbjct 83 LAGGLATAARLLRAGGERLVFWDCYRPHAVQARMFEVVPNPAWVARPGPYARSHVAGRSV 142
Query 166 DVTFASAQRQCPSVRRSGELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQ 225
DVT A A R L DMGT FDDF++R+ A+AT+G+S AQANRA LR AM
Sbjct 143 DVTLALADR------------LVDMGTGFDDFTARSLAYATEGISVAAQANRARLRDAMT 190
Query 226 AGGLTVYSGEWWHFDGPGAGVDRPILEVPV 255
AGG TVY GEWWHFDGPGAGVDRPI EVPV
Sbjct 191 AGGFTVYDGEWWHFDGPGAGVDRPIPEVPV 220
>gi|145222167|ref|YP_001132845.1| peptidase M15D, vanX D-ala-D-ala dipeptidase [Mycobacterium gilvum
PYR-GCK]
gi|145214653|gb|ABP44057.1| peptidase M15D, vanX D-ala-D-ala dipeptidase [Mycobacterium gilvum
PYR-GCK]
Length=205
Score = 291 bits (745), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 147/210 (70%), Positives = 162/210 (78%), Gaps = 12/210 (5%)
Query 46 NTTTPSGPVPPVSEAARAAGLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHES 105
+ T + P+PP+S+AARAAG VDVR VVPDA IDLRYAT+NNF G LYPP ARCLVHES
Sbjct 7 SATGSAAPIPPLSDAARAAGFVDVRAVVPDAVIDLRYATSNNFVGIPLYPPTARCLVHES 66
Query 106 MAEGLAAAAAVLRPHGQVLVFWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSV 165
+A GLA AA +LR G+ LVFWDCYRPH VQ RMF+VVPNPAWVARPG YA SH AGRSV
Sbjct 67 LAGGLATAARLLRAGGERLVFWDCYRPHAVQARMFEVVPNPAWVARPGPYARSHVAGRSV 126
Query 166 DVTFASAQRQCPSVRRSGELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQ 225
DVT A A R L DMGT FDDF++R+ A+AT+GVS AQANRA LR AM
Sbjct 127 DVTLALADR------------LVDMGTGFDDFTARSLAYATEGVSVAAQANRARLRDAMT 174
Query 226 AGGLTVYSGEWWHFDGPGAGVDRPILEVPV 255
AGG TVY GEWWHFDGPGAGVDRPI EVPV
Sbjct 175 AGGFTVYDGEWWHFDGPGAGVDRPIPEVPV 204
>gi|262200092|ref|YP_003271300.1| peptidase M15D vanX D-ala-D-ala dipeptidase [Gordonia bronchialis
DSM 43247]
gi|262083439|gb|ACY19407.1| peptidase M15D vanX D-ala-D-ala dipeptidase [Gordonia bronchialis
DSM 43247]
Length=261
Score = 286 bits (733), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 153/251 (61%), Positives = 175/251 (70%), Gaps = 7/251 (2%)
Query 7 LRLLMVGLVVICGACACDRVSAGRWSESPSATSWPVRPVNTTTPSGP----VPPVSEAAR 62
+ LL++GL+ + C D S+G S SPS S + P PS P VPPVS AAR
Sbjct 11 MTLLVIGLMAV--GCGTDTPSSGAPSVSPS-VSPKLSPPGDVAPSRPTPVSVPPVSAAAR 67
Query 63 AAGLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEGLAAAAAVLRPHGQ 122
A G +DVR VVPDA +DLRYAT +NFTG LYP GARCLVH SM GL AA VLR G+
Sbjct 68 AVGFIDVRTVVPDAIVDLRYATPHNFTGVTLYPRGARCLVHSSMGAGLKTAAQVLRRGGE 127
Query 123 VLVFWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVDVTFASAQRQCPSVRRS 182
VLVFWDCYRPH VQ M++ V NPAWVA PG Y+ SHE+GRSVDVT AS + C + RR
Sbjct 128 VLVFWDCYRPHSVQQTMYEKVSNPAWVAAPGPYSRSHESGRSVDVTIASHRANCRAARRI 187
Query 183 GELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQAGGLTVYSGEWWHFDGP 242
E CLA+MGT FD F+ A A+AT GVSA AQ NRA LR AM AGGL VYSGEWWHFDG
Sbjct 188 AEDCLAEMGTGFDSFTPAAMAYATDGVSAAAQRNRARLRNAMSAGGLAVYSGEWWHFDGA 247
Query 243 GAGVDRPILEV 253
GA V RPI++V
Sbjct 248 GADVRRPIIDV 258
>gi|120406129|ref|YP_955958.1| peptidase M15D, vanX D-ala-D-ala dipeptidase [Mycobacterium vanbaalenii
PYR-1]
gi|119958947|gb|ABM15952.1| peptidase M15D, vanX D-ala-D-ala dipeptidase [Mycobacterium vanbaalenii
PYR-1]
Length=221
Score = 282 bits (722), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 143/211 (68%), Positives = 160/211 (76%), Gaps = 12/211 (5%)
Query 46 NTTTPSGPVPPVSEAARAAGLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHES 105
+ T + PVPPVS+AARAAG VDVR VVPDA +DLRYAT +NF G LYP GARC+VHES
Sbjct 23 SATGAASPVPPVSDAARAAGFVDVRSVVPDAIVDLRYATPDNFVGIPLYPAGARCMVHES 82
Query 106 MAEGLAAAAAVLRPHGQVLVFWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSV 165
+A GLA AA ++RPHG+ LVFWDCYRPH VQVRMF++VP+PAWVARPG YA SH AGRSV
Sbjct 83 LAPGLAVAADLVRPHGERLVFWDCYRPHAVQVRMFEMVPDPAWVARPGPYARSHVAGRSV 142
Query 166 DVTFASAQRQCPSVRRSGELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQ 225
DVT A G L DMGT FDDFS R+ A+A GVS AQANRA LR AM
Sbjct 143 DVTLA------------GPDGLVDMGTGFDDFSPRSLAYAADGVSPAAQANRARLRDAMI 190
Query 226 AGGLTVYSGEWWHFDGPGAGVDRPILEVPVD 256
AGG T Y GEWWHFDGPGA V+RPIL+VPVD
Sbjct 191 AGGFTAYDGEWWHFDGPGAAVERPILDVPVD 221
>gi|343926397|ref|ZP_08765902.1| putative D-alanyl-D-alanine dipeptidase [Gordonia alkanivorans
NBRC 16433]
gi|343763635|dbj|GAA12828.1| putative D-alanyl-D-alanine dipeptidase [Gordonia alkanivorans
NBRC 16433]
Length=242
Score = 278 bits (711), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 139/212 (66%), Positives = 157/212 (75%), Gaps = 1/212 (0%)
Query 44 PVNTTTPSGPVPPVSEAARAAGLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVH 103
PV++ +P+ P V RA GLVDV+ VV DA +DLRYAT +NF G +LYPP ARCLVH
Sbjct 31 PVDSPSPT-PRHSVDRQTRAVGLVDVKSVVADAVLDLRYATTDNFVGERLYPPDARCLVH 89
Query 104 ESMAEGLAAAAAVLRPHGQVLVFWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGR 163
ESMA GL AA LR GQ LVFWDCYRPH VQ +MF VP+PAWVA PG Y+ SHE GR
Sbjct 90 ESMAPGLRTAAQKLRAGGQTLVFWDCYRPHSVQQKMFQKVPDPAWVAAPGPYSTSHETGR 149
Query 164 SVDVTFASAQRQCPSVRRSGELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAA 223
SVDVT A CP+ R+ G LC DMGTDFD F+ RA A+ATQGVSA AQA RA LR A
Sbjct 150 SVDVTLAVRSPGCPAPRKIGNLCRVDMGTDFDSFTPRANAYATQGVSAPAQAARARLRQA 209
Query 224 MQAGGLTVYSGEWWHFDGPGAGVDRPILEVPV 255
M GGLTVYSGEWWHFDGPGA V RPI++VP+
Sbjct 210 MADGGLTVYSGEWWHFDGPGADVRRPIVDVPL 241
>gi|333990633|ref|YP_004523247.1| hypothetical protein JDM601_1992 [Mycobacterium sp. JDM601]
gi|333486600|gb|AEF35992.1| lipoprotein LpqR [Mycobacterium sp. JDM601]
Length=220
Score = 239 bits (610), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 132/192 (69%), Positives = 145/192 (76%), Gaps = 12/192 (6%)
Query 65 GLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEGLAAAAAVLRPHGQVL 124
G VDVR VPDA IDLRYAT NNFTG QLYP ARCLVHES+A GLAAAA VLR G+ L
Sbjct 41 GFVDVRSAVPDAIIDLRYATTNNFTGVQLYPANARCLVHESLAPGLAAAADVLRRRGRTL 100
Query 125 VFWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVDVTFASAQRQCPSVRRSGE 184
VFWDCYRPH+VQVRMF+VVP+P WVARPG A SHE GRSVDVT A + +
Sbjct 101 VFWDCYRPHEVQVRMFEVVPDPNWVARPGPLARSHETGRSVDVTTADPRGR--------- 151
Query 185 LCLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQAGGLTVYSGEWWHFDGPGA 244
L +MGT FDDFS RA AFA +G+ A+A A RA LR AM AGGL VYSGEWWHFDGPGA
Sbjct 152 --LVEMGTGFDDFSPRAAAFA-EGIGAQAAAERAALREAMSAGGLAVYSGEWWHFDGPGA 208
Query 245 GVDRPILEVPVD 256
GV RPIL+V V+
Sbjct 209 GVGRPILDVAVN 220
>gi|118471763|ref|YP_890105.1| D-alanyl-D-alanine dipeptidase [Mycobacterium smegmatis str.
MC2 155]
gi|118173050|gb|ABK73946.1| D-alanyl-D-alanine dipeptidase [Mycobacterium smegmatis str.
MC2 155]
Length=218
Score = 237 bits (604), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 130/190 (69%), Positives = 146/190 (77%), Gaps = 18/190 (9%)
Query 66 LVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEGLAAAAAVLRPHGQVLV 125
LVDVR VVPDA +DLRYAT +NF G QLYP G+RCLVHESMA GLA AAA LRP + LV
Sbjct 46 LVDVRTVVPDAVVDLRYATTDNFVGEQLYPTGSRCLVHESMAHGLAVAAARLRP--ERLV 103
Query 126 FWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVDVTFASAQRQCPSVRRSGEL 185
FWDCYRPH+VQVRMF+VVPNPAWVARPG A SHEAGRSVDVT A A
Sbjct 104 FWDCYRPHEVQVRMFEVVPNPAWVARPGTAARSHEAGRSVDVTIAGA------------- 150
Query 186 CLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQAGGLTVYSGEWWHFDGPGAG 245
DMGT FDDF++R+ A+AT+GV+A A+ANRA LR AMQAGGL+VY GEWWHFDGPGA
Sbjct 151 ---DMGTGFDDFTARSRAYATEGVNAAARANRARLRDAMQAGGLSVYEGEWWHFDGPGAD 207
Query 246 VDRPILEVPV 255
RP +VP+
Sbjct 208 QPRPFPKVPL 217
>gi|239905138|ref|YP_002951877.1| putative D-alanyl-D-alanine dipeptidase [Desulfovibrio magneticus
RS-1]
gi|239795002|dbj|BAH73991.1| putative D-alanyl-D-alanine dipeptidase [Desulfovibrio magneticus
RS-1]
Length=220
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/199 (44%), Positives = 111/199 (56%), Gaps = 20/199 (10%)
Query 64 AGLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEGLAAAAAVLRPHGQV 123
AGLVD+ V PD A+D+RYAT NNFTG +YP RC + +A+ LA+A A L+ G
Sbjct 36 AGLVDITTVAPDIALDIRYATPNNFTGVAVYP-APRCFLRADVAKRLASAQAELKKEGLS 94
Query 124 LVFWDCYRPHDVQVRMFDVVPNPAWVARP----GKYA--HSHEAGRSVDVTFASAQRQCP 177
L +DCYRP +Q + + +VPN WVA+P GK A H G +VD+T A Q
Sbjct 95 LKVYDCYRPFAIQKKFWALVPNEDWVAKPVEKDGKPASGSKHNRGAAVDLTLVDAAGQ-- 152
Query 178 SVRRSGELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQAGGLTVYSGEWW 237
EL M + FDDFS +A T G A A+AN L AAMQ G EWW
Sbjct 153 ------EL---PMPSGFDDFSEKARRDYTGGDPA-ARANAKRLEAAMQKAGFDPLPSEWW 202
Query 238 HFDGPGAGVDRPILEVPVD 256
HFDGPG +L+VP++
Sbjct 203 HFDGPGWQSFE-LLDVPIN 220
>gi|108758912|ref|YP_634540.1| D-alanyl-D-alanine dipeptidase [Myxococcus xanthus DK 1622]
gi|108462792|gb|ABF87977.1| D-alanyl-D-alanine dipeptidase [Myxococcus xanthus DK 1622]
Length=218
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/189 (41%), Positives = 106/189 (57%), Gaps = 14/189 (7%)
Query 66 LVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEGLAAAAAVLRPHGQVLV 125
LVD VVPD +DLRYATA+NF ++YP ARCL+ AE L AA VLR G L
Sbjct 40 LVDATTVVPDLVVDLRYATADNFLKRKVYPDTARCLLLPESAERLKKAADVLRARGYRLK 99
Query 126 FWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVDVTFASAQRQCPSVRRSGEL 185
+DCYRP VQ +M++++P P +VA P + +H G +VD+T + + Q
Sbjct 100 VYDCYRPRAVQYQMWEIMPVPGYVANP-RTGSNHNRGGAVDLTLTTLEGQA--------- 149
Query 186 CLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQAGGLTVYSGEWWHFDGPGAG 245
+M T FD F +RA +G + ++ +R LR AM+ G EWWH+D P A
Sbjct 150 --VEMPTPFDTF-TRAAHHGYEGGTEASRKHREILREAMEGVGFKRNRMEWWHYDLPDAK 206
Query 246 VDRPILEVP 254
RP+L+VP
Sbjct 207 -KRPVLDVP 214
>gi|115373080|ref|ZP_01460382.1| D-alanyl-D-alanine dipeptidase [Stigmatella aurantiaca DW4/3-1]
gi|310824374|ref|YP_003956732.1| d-alanyl-d-alanine dipeptidase [Stigmatella aurantiaca DW4/3-1]
gi|115369836|gb|EAU68769.1| D-alanyl-D-alanine dipeptidase [Stigmatella aurantiaca DW4/3-1]
gi|309397446|gb|ADO74905.1| D-alanyl-D-alanine dipeptidase [Stigmatella aurantiaca DW4/3-1]
Length=199
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/198 (40%), Positives = 102/198 (52%), Gaps = 20/198 (10%)
Query 60 AARAAGLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEGLAAAAAVLRP 119
AA + LVD VPD +D+RYAT +NF ++YP ARCL+ A L AA VLRP
Sbjct 14 AAGSEPLVDATEAVPDLVVDMRYATEDNFLKRKVYPEDARCLLLPDAARRLKQAADVLRP 73
Query 120 HGQVLVFWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVDVTFASAQRQCPSV 179
G + +DCYRP VQ M+ +VP P +VA P K+ +H G +VD+T +
Sbjct 74 KGYRVKVYDCYRPRAVQWEMWKLVPKPGYVANP-KFGSNHNRGAAVDLTLVTL------- 125
Query 180 RRSGELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAH---LRAAMQAGGLTVYSGEW 236
E +M T FDDF T A G +A+R H L AM+ G EW
Sbjct 126 ----EGAAVEMPTAFDDF----TPAAHHGYKGGTEASRKHRQVLLEAMEGAGFLRNKMEW 177
Query 237 WHFDGPGAGVDRPILEVP 254
WH+D PG P+L+VP
Sbjct 178 WHYDLPGTK-KMPVLDVP 194
>gi|338532544|ref|YP_004665878.1| D-alanyl-D-alanine dipeptidase [Myxococcus fulvus HW-1]
gi|337258640|gb|AEI64800.1| D-alanyl-D-alanine dipeptidase [Myxococcus fulvus HW-1]
Length=212
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/189 (40%), Positives = 103/189 (55%), Gaps = 14/189 (7%)
Query 66 LVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEGLAAAAAVLRPHGQVLV 125
LVD VV D +DLRYATA+NF ++YP ARCL+ A+ L AA VLR G L
Sbjct 34 LVDATTVVKDLGVDLRYATADNFLKKKVYPDTARCLLLPESAQRLKKAADVLRAQGYRLK 93
Query 126 FWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVDVTFASAQRQCPSVRRSGEL 185
+DCYRP VQ +M++++P P +VA P + +H G +VD+T + +
Sbjct 94 VYDCYRPRAVQYQMWEIMPVPGYVANP-RTGSNHNRGGAVDLTLTTLDGKE--------- 143
Query 186 CLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQAGGLTVYSGEWWHFDGPGAG 245
+M T FD F +RA G + ++ +R LR AM+ G EWWH+D P A
Sbjct 144 --VEMPTPFDTF-TRAAHHGYTGGTEASRKHREILREAMEGAGFKRNRMEWWHYDLPDAR 200
Query 246 VDRPILEVP 254
RP+L+VP
Sbjct 201 -KRPVLDVP 208
>gi|334116656|ref|ZP_08490748.1| peptidase M15D vanX D-ala-D-ala dipeptidase [Microcoleus vaginatus
FGP-2]
gi|333461476|gb|EGK90081.1| peptidase M15D vanX D-ala-D-ala dipeptidase [Microcoleus vaginatus
FGP-2]
Length=241
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/219 (37%), Positives = 116/219 (53%), Gaps = 23/219 (10%)
Query 45 VNTTTPS-GPVPP----VSEAARAAGLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGAR 99
V TT P PV P +S+ R+A LVD+R V P+ +D+RYAT NNF +LY P ++
Sbjct 37 VQTTQPEPNPVVPESIFMSQLPRSARLVDIRTVNPNIRLDIRYATTNNFLKRKLY-PISK 95
Query 100 CLVHESMAEGLAAAAAVLRPHGQVLVFWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSH 159
C + S+A+ L L G L +DCYRP V +M+ P+P +VA P + H
Sbjct 96 CALRSSVAQQLGLVQTDLEKIGLGLKVYDCYRPFSVTKQMWQAWPDPRYVANPAR-GSRH 154
Query 160 EAGRSVDVTFASAQRQCPSVRRSGELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAH 219
G ++D+T V R+G+ +M T +DDF+ +A QG SAE++ NR
Sbjct 155 NRGAAIDLTL---------VDRTGKEL--EMPTPYDDFTEKAHG-DYQGGSAESRKNRQV 202
Query 220 LRAAMQAGGLTVYSGEWWHFDGPG----AGVDRPILEVP 254
L+ AM+ G + EWWHFD A +D + E+P
Sbjct 203 LKNAMKKHGFIGITTEWWHFDSEDWQKFAILDISLSEIP 241
>gi|303245627|ref|ZP_07331910.1| peptidase M15D vanX D-ala-D-ala dipeptidase [Desulfovibrio fructosovorans
JJ]
gi|302492890|gb|EFL52755.1| peptidase M15D vanX D-ala-D-ala dipeptidase [Desulfovibrio fructosovorans
JJ]
Length=216
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 107/200 (54%), Gaps = 22/200 (11%)
Query 64 AGLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEGLAAAAAVLRPHGQV 123
AGLVD+ V PD +D+RYAT +NFT +YP ARC + +A+ LA A L G
Sbjct 32 AGLVDIATVAPDIRLDMRYATPDNFTHVAVYP-AARCFLRADVAKRLARVQANLEKEGLG 90
Query 124 LVFWDCYRPHDVQVRMFDVVPNPAWVARP----GK--YAHSHEAGRSVDVTFASAQRQCP 177
L +DCYRP +Q + + +VPN WVA+P GK H G +VD+T +A Q
Sbjct 91 LKVFDCYRPFSIQKKFWALVPNEDWVAKPVEKNGKPVSGSKHNRGAAVDLTLVTATGQ-- 148
Query 178 SVRRSGELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQAGGLTVYSGEWW 237
E+ M + FDDF+ +A G A A+AN L AAM G EWW
Sbjct 149 ------EMP---MPSGFDDFTEKARRNYAGGDPA-ARANAKRLEAAMAKEGFEPLPSEWW 198
Query 238 HFDGPG-AGVDRPILEVPVD 256
HFDGPG G + +L+VP++
Sbjct 199 HFDGPGWKGYE--LLDVPIN 216
>gi|283851668|ref|ZP_06368947.1| peptidase M15D vanX D-ala-D-ala dipeptidase [Desulfovibrio sp.
FW1012B]
gi|283572998|gb|EFC20979.1| peptidase M15D vanX D-ala-D-ala dipeptidase [Desulfovibrio sp.
FW1012B]
Length=219
Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 82/201 (41%), Positives = 104/201 (52%), Gaps = 22/201 (10%)
Query 63 AAGLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEGLAAAAAVLRPHGQ 122
AAGLVDV PD +D+RYAT NNFT +YP RC + +A LA A L G
Sbjct 34 AAGLVDVTRAAPDVRLDIRYATPNNFTHVAVYP-APRCFLRADVAARLARVQAELEKQGL 92
Query 123 VLVFWDCYRPHDVQVRMFDVVPNPAWVARP----GKYA--HSHEAGRSVDVTFASAQRQC 176
L +DCYRP +Q + + +VPN WVA+P GK A H G +VD+T A
Sbjct 93 GLKVYDCYRPFSIQKKFWALVPNEDWVAKPVEKDGKPASGSKHNRGAAVDLTLVDAS--- 149
Query 177 PSVRRSGELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQAGGLTVYSGEW 236
EL M + FDDF+ +A G A A+AN L AAM+ G EW
Sbjct 150 -----GNELP---MPSGFDDFTEKARRDYAGGDPA-ARANAKRLEAAMRKEGFEPLPTEW 200
Query 237 WHFDGPG-AGVDRPILEVPVD 256
WHFDGPG G D +L+ P++
Sbjct 201 WHFDGPGWQGYD--LLDAPIN 219
>gi|187251245|ref|YP_001875727.1| D-alanyl-D-alanine dipeptidase [Elusimicrobium minutum Pei191]
gi|186971405|gb|ACC98390.1| D-Alanyl-D-alanine dipeptidase [Elusimicrobium minutum Pei191]
Length=263
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/187 (36%), Positives = 94/187 (51%), Gaps = 16/187 (8%)
Query 60 AARAAGLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEGLAAAAAVLRP 119
A + AG V+++ + P D+RYAT NNFTG +Y +C + + +EG+ A +L+
Sbjct 79 ALKTAGFVNIKELSPLFYFDIRYATTNNFTGKVIYDTD-QCYLQKEASEGILKALKILQK 137
Query 120 HGQ--VLVFWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVDVTFASAQRQCP 177
+ +F+DCYRP Q +++ PNP++VARP K H G +VD+T A Q P
Sbjct 138 RDEPLTFIFYDCYRPQSAQEKLWLAYPNPSYVARPEK-GSRHSRGMAVDLTLAK-QDGTP 195
Query 178 SVRRSGELCLADMGTDFDDFSSRA-TAFATQGVSAEAQANRAHLRAAMQAGGLTVYSGEW 236
M T+FD F A + VS EA NR L+ M G T EW
Sbjct 196 ----------LPMPTEFDSFKKEAHMDYNGSSVSKEALENRDLLKKVMTEAGFTYTRTEW 245
Query 237 WHFDGPG 243
WHFD G
Sbjct 246 WHFDKTG 252
>gi|344203604|ref|YP_004788747.1| peptidase M15D vanX D-ala-D-ala dipeptidase [Muricauda ruestringensis
DSM 13258]
gi|343955526|gb|AEM71325.1| peptidase M15D vanX D-ala-D-ala dipeptidase [Muricauda ruestringensis
DSM 13258]
Length=240
Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/243 (31%), Positives = 110/243 (46%), Gaps = 20/243 (8%)
Query 9 LLMVGLVVICGACACDRVSAGRWSESPSATSWPVRPVNTTT---PSGPVPPVSEAARAAG 65
++ +GL+++ +C + + + + + T+ + V++ T V E
Sbjct 5 IIFLGLLLMV---SCKQKAKNQNESAQTETAIRLDSVSSDTIVKEEAAVLKTFEGLADTT 61
Query 66 LVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEGLAAAAAVLRPHGQVLV 125
V + D A D+RYAT NNF ++Y A C A L A G +
Sbjct 62 FVRLADFSEDFAYDMRYATENNFLKAKVYD-CAECYTRVKTARALIEANKDFMEKGVKIK 120
Query 126 FWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVDVTFASAQRQCPSVRRSGEL 185
F+DCYRP+ VQ +M+++VPNP +VA P K H G +VD+T + EL
Sbjct 121 FFDCYRPNSVQYKMWEIVPNPQYVANPDK-GSIHNKGGAVDITLVDME--------GNEL 171
Query 186 CLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQAGGLTVYSGEWWHFDGPGAG 245
DMGTDFD F RA + E NR L+ M+A G EWWH++ A
Sbjct 172 ---DMGTDFDYFGKRAYH-DNLDLPQEILDNRKLLKETMEAHGFWSIRTEWWHYNLSAAS 227
Query 246 VDR 248
DR
Sbjct 228 NDR 230
>gi|308185977|ref|YP_003930108.1| D-alanyl-D-alanine dipeptidase [Pantoea vagans C9-1]
gi|308056487|gb|ADO08659.1| D-alanyl-D-alanine dipeptidase [Pantoea vagans C9-1]
Length=193
Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 70/183 (39%), Positives = 93/183 (51%), Gaps = 14/183 (7%)
Query 62 RAAGLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEGLAAAAAVLRPHG 121
+ LVD+ P +AIDL+YATA+N TG +Y ARCL+H A LA + + G
Sbjct 2 ESKNLVDIAEAFPQSAIDLKYATADNLTGQPIYR-DARCLLHADAARALAKSIDIANVAG 60
Query 122 QVLVFWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVDVTFASAQRQCPSVRR 181
L+ D YRP Q ++ PN +VA P +H G +VDVT Q
Sbjct 61 YSLLILDAYRPPAAQAILWQACPNQDYVA-PLTRGSNHSRGTAVDVTLIDEQ-------- 111
Query 182 SGELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQAGGLTVYSGEWWHFDG 241
GE+ DMGT FD+ S + + V +AQ NR L A M GG T + EWWHF+
Sbjct 112 -GEIV--DMGTGFDEMSEHSHPYHP-AVPVQAQRNRLMLNAIMLGGGFTGIASEWWHFEL 167
Query 242 PGA 244
PG+
Sbjct 168 PGS 170
>gi|305667513|ref|YP_003863800.1| putative peptidase [Maribacter sp. HTCC2170]
gi|88709561|gb|EAR01794.1| probable peptidase [Maribacter sp. HTCC2170]
Length=238
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 80/256 (32%), Positives = 114/256 (45%), Gaps = 32/256 (12%)
Query 8 RLLMVGLVVICGACACDRVSAGRWSESPSATSWPVRPVNTTTPSGPVPPVSEAARAA--G 65
R +++ +++ G C E P+ + T S + V E G
Sbjct 3 RFILLFCLILIGGC----------KEHPTNKNLEPSTRAITVDSIKIEKVIEEKFKTYNG 52
Query 66 LVDVRGV-VPDAAI----DLRYATANNFTGTQLYPPGARCLVHESMAEGLAAAAAVLRPH 120
L D V + D ++ D+RYAT NNF ++Y A C A+ L A +
Sbjct 53 LADTTFVRLADFSVGFAYDMRYATKNNFLKEKVYD-CAECYTRVKTAKALIKANKAFKKS 111
Query 121 GQVLVFWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVDVTFASAQRQCPSVR 180
G + F+DCYRP+ VQ +M+++VPNP +VA P K H G +VD+T + Q +
Sbjct 112 GVKIKFFDCYRPNSVQYKMWELVPNPQYVANPVK-GSIHNKGGAVDITLVTLQGE----- 165
Query 181 RSGELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQAGGLTVYSGEWWHFD 240
EL DMGTDFD F RA + E NR L+ M+ G EWWH++
Sbjct 166 ---EL---DMGTDFDFFGKRAYH-DNLDLPKEILDNRKLLKETMEKHGFWSTRTEWWHYN 218
Query 241 GPGAGVDRPILEVPVD 256
GA D PI D
Sbjct 219 LQGAHKD-PIANFKWD 233
>gi|338812485|ref|ZP_08624659.1| putative D-alanyl-D-alanine dipeptidase [Acetonema longum DSM
6540]
gi|337275526|gb|EGO63989.1| putative D-alanyl-D-alanine dipeptidase [Acetonema longum DSM
6540]
Length=215
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 74/205 (37%), Positives = 100/205 (49%), Gaps = 16/205 (7%)
Query 54 VPPVSE--AARAAGLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEGLA 111
+PPV A LV ++ + P ID+RYA +NFTG Q+Y C++ AE LA
Sbjct 22 LPPVYSLAAGSQQDLVKIQNIDPAIYIDMRYAGIHNFTGRQVYTANV-CVLRRGTAEKLA 80
Query 112 AAAAVLRPHGQVLVFWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVDVTFAS 171
A A G L WD YRP VQ + +VP+ +VA P A H G +VDVT
Sbjct 81 RANAEFAKRGFRLKIWDAYRPLSVQKIFWKLVPDRRYVANPQGNASRHNRGTAVDVTLVD 140
Query 172 AQRQCPSVRRSGELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQAGGLTV 231
Q EL M ++FDDFS RA G+S AQ+N A+L M+ G
Sbjct 141 EQ--------GRELI---MPSEFDDFSYRAQR-DYPGISPFAQSNAAYLAEVMEQAGFRS 188
Query 232 YSGEWWHFDGPGAGVDRPILEVPVD 256
EWWHFD + P+ ++P++
Sbjct 189 LGSEWWHFDDADWTM-YPVEDIPLE 212
>gi|260062547|ref|YP_003195627.1| D-alanyl-D-alanine dipeptidase [Robiginitalea biformata HTCC2501]
gi|88784114|gb|EAR15284.1| D-alanyl-D-alanine dipeptidase [Robiginitalea biformata HTCC2501]
Length=289
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/190 (37%), Positives = 94/190 (50%), Gaps = 14/190 (7%)
Query 51 SGPVPPVSEAARAAGLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEGL 110
S P PP E+ + + A DLRYAT NNF G +YP G C A L
Sbjct 95 SAPNPPSLESLPDTTFIRLADYSDAFAYDLRYATDNNFLGEVVYPCG-ECYTRVKTARAL 153
Query 111 AAAAAVLRPHGQVLVFWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVDVTFA 170
AA A R G + F+DCYRP+ VQ +M+++VPNP +VA P K H G +VD+T
Sbjct 154 LAANADFRKQGLRIRFFDCYRPNSVQYKMWELVPNPQYVANPEK-GSIHNKGGAVDITLE 212
Query 171 SAQRQCPSVRRSGELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQAGGLT 230
+ + GE +MGTDFD F +A T A + NR L+ M++ G
Sbjct 213 TLE---------GEPL--EMGTDFDFFGPKAHHDHTNLPEAVLE-NRKILKETMESHGFL 260
Query 231 VYSGEWWHFD 240
EWWH++
Sbjct 261 SIRTEWWHYN 270
>gi|189346789|ref|YP_001943318.1| peptidase M15D vanX D-ala-D-ala dipeptidase [Chlorobium limicola
DSM 245]
gi|189340936|gb|ACD90339.1| peptidase M15D vanX D-ala-D-ala dipeptidase [Chlorobium limicola
DSM 245]
Length=216
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/184 (39%), Positives = 100/184 (55%), Gaps = 17/184 (9%)
Query 75 DAAI--DLRYATANNFTGTQLYPPGARCLVHESMAEGLAAAAAVLRPHGQVLVFWDCYRP 132
DA+I D+RYAT +NFTG ++YP ARCL+ +A L LR G L+ +DCYRP
Sbjct 41 DASIIFDIRYATTSNFTGKKVYP-AARCLLRRDVAMRLLKVQEKLRAKGYRLIVFDCYRP 99
Query 133 HDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVDVTFASAQRQCPSVRRSGELCLADMGT 192
VQ + ++P+ +VA P + H G SVDV+ A + + +M +
Sbjct 100 LSVQKHFWAILPDKRYVADPAE-GSRHNRGASVDVSLADSTGKP-----------LEMPS 147
Query 193 DFDDFSSRATAFATQGVSAEAQANRAHLRAAMQAGGLTVYSGEWWHFDGPGAGVDRPILE 252
+DDFS +AT T G SA A+ N L AM+ G +SGEWWHFD G + P+ +
Sbjct 148 GYDDFSEKATRGWT-GSSATARRNCGLLDTAMKEEGFEPFSGEWWHFDAAGWEL-YPVSD 205
Query 253 VPVD 256
P++
Sbjct 206 FPLE 209
>gi|340619146|ref|YP_004737599.1| D-Ala-D-Ala dipeptidase 5 [Zobellia galactanivorans]
gi|339733943|emb|CAZ97320.1| D-Ala-D-Ala dipeptidase, family M15 [Zobellia galactanivorans]
Length=242
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/246 (30%), Positives = 106/246 (44%), Gaps = 18/246 (7%)
Query 7 LRLLMVGLVVICGACACDRVSAGRWSES----PSATSWPVRPVNTTTPSGPVPPVSEAAR 62
+R L+++ AC ++G+ PSA + P+ E
Sbjct 1 MRNFYSALILLLCFVACKETTSGKKEAEQHVMPSAQAVDTLLKEEKKPAPKTFRTFENLA 60
Query 63 AAGLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEGLAAAAAVLRPHGQ 122
V + A DLRYAT NNF ++Y A C A+ L A + G
Sbjct 61 DTTFVRLADFSDGFAYDLRYATKNNFLKEKVYD-CAECYTRVKTAKALLKANEEFKKSGV 119
Query 123 VLVFWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVDVTFASAQRQCPSVRRS 182
+ F+DCYRP+ VQ +M+ +VPNP +VA P K H G +VD+T + + +
Sbjct 120 RIKFFDCYRPNSVQYKMWKIVPNPQYVANPKK-GSIHNKGGAVDITLETLEGE------- 171
Query 183 GELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQAGGLTVYSGEWWHFDGP 242
EL DMGTDFD F RA + + ANR L+ M+ G EWWH++
Sbjct 172 -EL---DMGTDFDFFGKRAYH-DNFDLPEKVLANRKLLKETMEKHGFWSIRTEWWHYNLK 226
Query 243 GAGVDR 248
D+
Sbjct 227 AGSNDK 232
>gi|325287488|ref|YP_004263278.1| peptidase M15D vanX D-ala-D-ala dipeptidase [Cellulophaga lytica
DSM 7489]
gi|324322942|gb|ADY30407.1| peptidase M15D vanX D-ala-D-ala dipeptidase [Cellulophaga lytica
DSM 7489]
Length=242
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/195 (37%), Positives = 92/195 (48%), Gaps = 22/195 (11%)
Query 54 VPPVSEAAR---AAGLVDVRGV-----VPDAAIDLRYATANNFTGTQLYPPGARCLVHES 105
VPPV + + +GL D V D A DLRYAT NNF ++Y C
Sbjct 44 VPPVKQEIKYKSLSGLADTTFVRLADYSGDFAYDLRYATTNNFLKAKVYD-CPECYTRVK 102
Query 106 MAEGLAAAAAVLRPHGQVLVFWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSV 165
A+ L A G + F+DCYRP+ VQ +M+ +VPNP +VA P K H G +V
Sbjct 103 TAKALLKANKEFVKLGYRIKFFDCYRPNSVQYKMWKIVPNPQYVANPKK-GSIHNKGGAV 161
Query 166 DVTFASAQRQCPSVRRSGELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQ 225
D+T + GE DMGTDFD F RA T + E ANR L+ M+
Sbjct 162 DITLETL---------DGE--EVDMGTDFDFFGKRAYHDNT-NLPKEILANRKLLKETME 209
Query 226 AGGLTVYSGEWWHFD 240
G EWWH++
Sbjct 210 KYGFWSIRTEWWHYN 224
>gi|300863838|ref|ZP_07108763.1| putative peptidase [Oscillatoria sp. PCC 6506]
gi|300338186|emb|CBN53909.1| putative peptidase [Oscillatoria sp. PCC 6506]
Length=216
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/212 (34%), Positives = 108/212 (51%), Gaps = 17/212 (8%)
Query 30 RWSESPSATSWPVRPVNTTTPSGPVPPVSEAARAAGLVDVRGVVPDAAIDLRYATANNFT 89
R ++ P+ + P++ T S P+ V AR +D+R V P+ +D+RYAT NNF
Sbjct 5 RATDPPTVINDEASPISKPTESMPLYQVPSWART---IDIRTVNPNIRLDIRYATTNNFL 61
Query 90 GTQLYPPGARCLVHESMAEGLAAAAAVLRPHGQVLVFWDCYRPHDVQVRMFDVVPNPAWV 149
+LY ARC + S+A+ L+ ++ G L +DCYRP V +M+ +P+ +V
Sbjct 62 KRKLYS-VARCALRASVAQRLSRVQENVQKIGLSLKVYDCYRPLSVTKQMWAAMPDSRYV 120
Query 150 ARPGKYAHSHEAGRSVDVTFASAQRQCPSVRRSGELCLADMGTDFDDFSSRATAFATQGV 209
A P + H G +VD+T V RSG+ +M T FDDF+ +A G
Sbjct 121 ANPAR-GSRHNRGAAVDLTL---------VDRSGKEL--EMPTGFDDFTEKAHRDYLGG- 167
Query 210 SAEAQANRAHLRAAMQAGGLTVYSGEWWHFDG 241
S +++ N L M+A G S EWWHFD
Sbjct 168 SVQSRKNSQLLERVMKAQGFVSLSTEWWHFDS 199
>gi|195940492|ref|ZP_03085874.1| D-alanyl-D-alanine dipeptidase [Escherichia coli O157:H7 str.
EC4024]
Length=190
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 68/187 (37%), Positives = 91/187 (49%), Gaps = 15/187 (8%)
Query 66 LVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEGLAAAAAVLRPHGQVLV 125
L+DV P IDL+YATA+N TG +Y A CL+H A LA + ++ G LV
Sbjct 7 LIDVAKTFPTLHIDLKYATADNITGRPIYQQAA-CLLHTDAATALAKSISIAALAGLKLV 65
Query 126 FWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVDVTFASAQRQCPSVRRSGEL 185
+D YRP Q +++D PNP +V +H G ++DVT
Sbjct 66 VYDAYRPQQAQAQLWDACPNPEYVVDVA-IGSNHSRGTAIDVTLMDEHDN---------- 114
Query 186 CLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQAGGLTVYSGEWWHFDGPGAG 245
+ DMG FD+ R+ A+ V EAQ NR L A M GG S EWWHF+ P A
Sbjct 115 -VLDMGAGFDEMHDRSHAWHP-SVPPEAQRNRLLLNAVMYGGGFVGISSEWWHFELPNAA 172
Query 246 VDRPILE 252
P+L+
Sbjct 173 T-YPLLD 178
>gi|295095816|emb|CBK84906.1| D-alanyl-D-alanine dipeptidase [Enterobacter cloacae subsp. cloacae
NCTC 9394]
Length=190
Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 69/187 (37%), Positives = 91/187 (49%), Gaps = 15/187 (8%)
Query 66 LVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEGLAAAAAVLRPHGQVLV 125
L+DV P IDL+YATA+N TG +Y A CL+H A LA A ++ G LV
Sbjct 7 LIDVAKTFPTLHIDLKYATADNITGRPIYQHAA-CLLHTDAATALAKAISIAALAGLKLV 65
Query 126 FWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVDVTFASAQRQCPSVRRSGEL 185
+D YRP Q +++D PNP +V +H G ++DVT
Sbjct 66 VYDAYRPQQAQSQLWDACPNPEYVVDVA-IGSNHSRGTAIDVTLMDEHDN---------- 114
Query 186 CLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQAGGLTVYSGEWWHFDGPGAG 245
+ DMG FD+ R+ A+ V EAQ NR L A M GG S EWWHF+ P A
Sbjct 115 -VLDMGAGFDEMHDRSHAWHP-SVPPEAQRNRLLLNAVMYGGGFVGISSEWWHFELPNAA 172
Query 246 VDRPILE 252
P+L+
Sbjct 173 -SYPLLD 178
>gi|334124157|ref|ZP_08498166.1| D-Ala-D-Ala dipeptidase [Enterobacter hormaechei ATCC 49162]
gi|333389156|gb|EGK60322.1| D-Ala-D-Ala dipeptidase [Enterobacter hormaechei ATCC 49162]
Length=190
Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 68/187 (37%), Positives = 91/187 (49%), Gaps = 15/187 (8%)
Query 66 LVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEGLAAAAAVLRPHGQVLV 125
L+DV P IDL+YATA+N TG +Y A CL+H A LA + ++ G LV
Sbjct 7 LIDVAKTFPTLHIDLKYATADNITGRPIYQHAA-CLLHTDAATALAKSISIAALAGLKLV 65
Query 126 FWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVDVTFASAQRQCPSVRRSGEL 185
+D YRP Q +++D PNP +V +H G ++DVT
Sbjct 66 VYDAYRPQQAQAQLWDACPNPEYVVDVA-IGSNHSRGTAIDVTLMDEHDN---------- 114
Query 186 CLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQAGGLTVYSGEWWHFDGPGAG 245
+ DMG FD+ R+ A+ V EAQ NR L A M GG S EWWHF+ P A
Sbjct 115 -VLDMGAGFDEMHDRSHAWHP-SVPPEAQRNRLLLNAVMSGGGFVGISSEWWHFELPNAA 172
Query 246 VDRPILE 252
P+L+
Sbjct 173 -SYPLLD 178
>gi|209523083|ref|ZP_03271640.1| peptidase M15D vanX D-ala-D-ala dipeptidase [Arthrospira maxima
CS-328]
gi|209496670|gb|EDZ96968.1| peptidase M15D vanX D-ala-D-ala dipeptidase [Arthrospira maxima
CS-328]
Length=232
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 71/241 (30%), Positives = 114/241 (48%), Gaps = 24/241 (9%)
Query 3 LIGRLRLLMVGLVVICGACACDRVSAGRWSESPSATSWPVRPVNTTTPSGPVPPVSEAAR 62
++ + L+++ V++ +C W+E A S P+ + T P + S+ +
Sbjct 1 MLRKTALVIITFVLVFWSCNL-------WAEP--AYSLPL--IAQTPPPNLITDYSQVSA 49
Query 63 AAGLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEGLAAAAAVLRPHGQ 122
A LVD++ V + +D+RYAT NNF LYP +RCL+ A+ L+ L G
Sbjct 50 ANRLVDIQSVNRNIRLDIRYATPNNFVNRTLYP-VSRCLLRRPFAQRLSDVQKDLETMGL 108
Query 123 VLVFWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVDVTFASAQRQCPSVRRS 182
L+ +DCYRP V +M+ ++P+ +V P + H G +VD+T + P
Sbjct 109 GLMVYDCYRPWSVTWQMWQILPDSRYVGNPAR-GSRHNRGAAVDLTLVDLRTGQP----- 162
Query 183 GELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQAGGLTVYSGEWWHFDGP 242
+M TD+DDF+ +A T G + + N L M+ G EWWHFD
Sbjct 163 -----LEMPTDYDDFTEKAWRDYT-GNEPQVRRNSNLLELKMKQYGFEPLMTEWWHFDAQ 216
Query 243 G 243
G
Sbjct 217 G 217
>gi|229496133|ref|ZP_04389853.1| D-alanyl-D-alanine dipeptidase [Porphyromonas endodontalis ATCC
35406]
gi|229316711|gb|EEN82624.1| D-alanyl-D-alanine dipeptidase [Porphyromonas endodontalis ATCC
35406]
Length=245
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/214 (36%), Positives = 101/214 (48%), Gaps = 23/214 (10%)
Query 37 ATSWPVRPVNTTTPSGPVPPVSEAARAAGLVDVRGVVPDAAIDLRYATANNFTGTQLYPP 96
+ + P+ V T + + AAGLV+V + P+ +DLRYAT NFT QLY
Sbjct 26 SAALPLLKVRTQSSQEDKGTIDRKMEAAGLVNVCNLAPEIQLDLRYATTQNFTKQQLYKG 85
Query 97 GARCLVHESMAEGLAAAAAVL-RPH-GQVLVFWDCYRPHDVQVRMFDVV---PNPAWVAR 151
+R A+ +A A +L + H G V +D RP VQ M+ VV P +VA
Sbjct 86 LSRAYFQPKFAQRIAEAQCLLSKEHPGYHFVIFDASRPISVQRTMYAVVRDTPLKVYVAN 145
Query 152 PGKYAHSHEAGRSVDVTFASAQRQCPSVRRSGELCLADMGTDFDDFSSRATA-----FAT 206
G H G +VD++ A A E L DMGTDFD F A
Sbjct 146 -GARGGRHNYGVAVDLSIADA-----------EGTLLDMGTDFDFFGEEAHTDQEARLVK 193
Query 207 QG-VSAEAQANRAHLRAAMQAGGLTVYSGEWWHF 239
+G ++ EAQ NR LR+ M GL Y+ EWWHF
Sbjct 194 EGKITKEAQRNRQLLRSVMDRVGLRCYTREWWHF 227
>gi|223936899|ref|ZP_03628808.1| peptidase M15D vanX D-ala-D-ala dipeptidase [bacterium Ellin514]
gi|223894468|gb|EEF60920.1| peptidase M15D vanX D-ala-D-ala dipeptidase [bacterium Ellin514]
Length=207
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/183 (38%), Positives = 90/183 (50%), Gaps = 14/183 (7%)
Query 58 SEAARAAGLVDVRGVVPDAAIDLRYATANNFTGTQLYPPGARCLVHESMAEGLAAAAAVL 117
S + A LVDV+ VVP +D+RYAT NNFTG +LYP A+C + + A L L
Sbjct 21 STNKQMADLVDVKRVVPGVVLDIRYATTNNFTGKKLYPV-AKCCLRKEAAVSLREVQEEL 79
Query 118 RPHGQVLVFWDCYRPHDVQVRMFDVVPNPAWVARPGKYAHSHEAGRSVDVTFASAQRQCP 177
G L +D YRP VQ +M++V P+ +VA P K H G +VD+T
Sbjct 80 HELGYGLKIYDGYRPLSVQKKMWEVYPHEDYVANPAK-GSRHNRGAAVDLTL-------- 130
Query 178 SVRRSGELCLADMGTDFDDFSSRATAFATQGVSAEAQANRAHLRAAMQAGGLTVYSGEWW 237
+R G M T+FDDF+ +A + E NR L M A G EWW
Sbjct 131 -IRLDG--TAVSMPTEFDDFTEKAHR-NYMDLPEEQIQNRELLARIMTAHGFKGLPAEWW 186
Query 238 HFD 240
HFD
Sbjct 187 HFD 189
Lambda K H
0.321 0.134 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 377837056800
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40