BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0841

Length=80
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15840255|ref|NP_335292.1|  hypothetical protein MT0863 [Mycoba...   152    2e-35
gi|31792029|ref|NP_854522.1|  transmembrane protein [Mycobacteriu...   151    4e-35
gi|289573463|ref|ZP_06453690.1|  conserved hypothetical protein [...   150    5e-35
gi|340625855|ref|YP_004744307.1|  hypothetical protein MCAN_08431...   137    5e-31
gi|240170797|ref|ZP_04749456.1|  integral membrane protein [Mycob...  93.6    9e-18
gi|183984753|ref|YP_001853044.1|  integral membrane protein [Myco...  82.8    2e-14
gi|118616215|ref|YP_904547.1|  integral membrane protein [Mycobac...  73.2    1e-11
gi|15840256|ref|NP_335293.1|  hypothetical protein MT0864 [Mycoba...  67.0    9e-10
gi|306782120|ref|ZP_07420457.1|  conserved membrane protein [Myco...  67.0    1e-09
gi|15607982|ref|NP_215357.1|  integral membrane protein [Mycobact...  67.0    1e-09
gi|340625856|ref|YP_004744308.1|  putative integral membrane prot...  66.6    1e-09
gi|289752896|ref|ZP_06512274.1|  predicted protein [Mycobacterium...  66.2    1e-09
gi|240170796|ref|ZP_04749455.1|  putative integral membrane prote...  60.8    6e-08
gi|290959946|ref|YP_003491128.1|  protein [Streptomyces scabiei 8...  37.0    0.97 
gi|289770214|ref|ZP_06529592.1|  integral membrane transporter [S...  36.2    1.8  
gi|21222604|ref|NP_628383.1|  integral membrane transport protein...  36.2    1.8  
gi|254387135|ref|ZP_05002406.1|  integral membrane transport prot...  34.7    5.1  


>gi|15840255|ref|NP_335292.1| hypothetical protein MT0863 [Mycobacterium tuberculosis CDC1551]
 gi|57116790|ref|YP_177634.1| transmembrane protein [Mycobacterium tuberculosis H37Rv]
 gi|148660618|ref|YP_001282141.1| putative transmembrane protein [Mycobacterium tuberculosis H37Ra]
 39 more sequence titles
 Length=80

 Score =  152 bits (384),  Expect = 2e-35, Method: Compositional matrix adjust.
 Identities = 79/80 (99%), Positives = 80/80 (100%), Gaps = 0/80 (0%)

Query  1   VVAASIVHHSAAPANRGRYHGIWSMTPVVASVVVPIMASYGPIHGAHLLAAVVVGSAGAA  60
           +VAASIVHHSAAPANRGRYHGIWSMTPVVASVVVPIMASYGPIHGAHLLAAVVVGSAGAA
Sbjct  1   MVAASIVHHSAAPANRGRYHGIWSMTPVVASVVVPIMASYGPIHGAHLLAAVVVGSAGAA  60

Query  61  LCLPLARALRRPTPSAMTTD  80
           LCLPLARALRRPTPSAMTTD
Sbjct  61  LCLPLARALRRPTPSAMTTD  80


>gi|31792029|ref|NP_854522.1| transmembrane protein [Mycobacterium bovis AF2122/97]
 gi|121636764|ref|YP_976987.1| putative transmembrane protein [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|224989235|ref|YP_002643922.1| putative transmembrane protein [Mycobacterium bovis BCG str. 
Tokyo 172]
 gi|31617616|emb|CAD93726.1| PROBABLE CONSERVED TRANSMEMBRANE PROTEIN [Mycobacterium bovis 
AF2122/97]
 gi|121492411|emb|CAL70879.1| Probable conserved transmembrane protein [Mycobacterium bovis 
BCG str. Pasteur 1173P2]
 gi|224772348|dbj|BAH25154.1| putative transmembrane protein [Mycobacterium bovis BCG str. 
Tokyo 172]
 gi|341600780|emb|CCC63451.1| probable conserved transmembrane protein [Mycobacterium bovis 
BCG str. Moreau RDJ]
Length=80

 Score =  151 bits (381),  Expect = 4e-35, Method: Compositional matrix adjust.
 Identities = 78/80 (98%), Positives = 79/80 (99%), Gaps = 0/80 (0%)

Query  1   VVAASIVHHSAAPANRGRYHGIWSMTPVVASVVVPIMASYGPIHGAHLLAAVVVGSAGAA  60
           +VAASIVHHSAAPANRGRYHGIWSMTPV ASVVVPIMASYGPIHGAHLLAAVVVGSAGAA
Sbjct  1   MVAASIVHHSAAPANRGRYHGIWSMTPVFASVVVPIMASYGPIHGAHLLAAVVVGSAGAA  60

Query  61  LCLPLARALRRPTPSAMTTD  80
           LCLPLARALRRPTPSAMTTD
Sbjct  61  LCLPLARALRRPTPSAMTTD  80


>gi|289573463|ref|ZP_06453690.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|339630906|ref|YP_004722548.1| hypothetical protein MAF_08500 [Mycobacterium africanum GM041182]
 gi|289537894|gb|EFD42472.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|339330262|emb|CCC25922.1| putative conserved transmembrane protein [Mycobacterium africanum 
GM041182]
Length=80

 Score =  150 bits (379),  Expect = 5e-35, Method: Compositional matrix adjust.
 Identities = 78/80 (98%), Positives = 80/80 (100%), Gaps = 0/80 (0%)

Query  1   VVAASIVHHSAAPANRGRYHGIWSMTPVVASVVVPIMASYGPIHGAHLLAAVVVGSAGAA  60
           +VAASIV+HSAAPANRGRYHGIWSMTPVVASVVVPIMASYGPIHGAHLLAAVVVGSAGAA
Sbjct  1   MVAASIVNHSAAPANRGRYHGIWSMTPVVASVVVPIMASYGPIHGAHLLAAVVVGSAGAA  60

Query  61  LCLPLARALRRPTPSAMTTD  80
           LCLPLARALRRPTPSAMTTD
Sbjct  61  LCLPLARALRRPTPSAMTTD  80


>gi|340625855|ref|YP_004744307.1| hypothetical protein MCAN_08431 [Mycobacterium canettii CIPT 
140010059]
 gi|340004045|emb|CCC43181.1| putative conserved transmembrane protein [Mycobacterium canettii 
CIPT 140010059]
Length=76

 Score =  137 bits (345),  Expect = 5e-31, Method: Compositional matrix adjust.
 Identities = 71/74 (96%), Positives = 72/74 (98%), Gaps = 0/74 (0%)

Query  1   VVAASIVHHSAAPANRGRYHGIWSMTPVVASVVVPIMASYGPIHGAHLLAAVVVGSAGAA  60
           +VAASIVHHSAAPANRGRYHGIWSMTP VASVVVPIMASYGPIHG HLLAAVVVGSAGAA
Sbjct  1   MVAASIVHHSAAPANRGRYHGIWSMTPAVASVVVPIMASYGPIHGGHLLAAVVVGSAGAA  60

Query  61  LCLPLARALRRPTP  74
           LCLPLARALRRPTP
Sbjct  61  LCLPLARALRRPTP  74


>gi|240170797|ref|ZP_04749456.1| integral membrane protein [Mycobacterium kansasii ATCC 12478]
Length=518

 Score = 93.6 bits (231),  Expect = 9e-18, Method: Compositional matrix adjust.
 Identities = 51/74 (69%), Positives = 56/74 (76%), Gaps = 3/74 (4%)

Query  1    VVAASIVHHSAAPANRGRYHGIWSMTPVVASVVVPIMASYGPIHGAHLLAAVV---VGSA  57
            V+AA IVH  A PAN GRYHGIWSMT  +ASVV PI+ASY  +HG H L A+V   VG  
Sbjct  435  VIAAGIVHRIAPPANGGRYHGIWSMTLAIASVVAPIIASYSLVHGGHRLVAIVTVTVGLT  494

Query  58   GAALCLPLARALRR  71
            GAALCLPLARALRR
Sbjct  495  GAALCLPLARALRR  508


>gi|183984753|ref|YP_001853044.1| integral membrane protein [Mycobacterium marinum M]
 gi|183178079|gb|ACC43189.1| integral membrane protein [Mycobacterium marinum M]
Length=437

 Score = 82.8 bits (203),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 48/74 (65%), Positives = 54/74 (73%), Gaps = 3/74 (4%)

Query  1    VVAASIVHHSAAPANRGRYHGIWSMTPVVASVVVPIMASYGPIHGAHLLAAVV---VGSA  57
            V+AA IVH  A PA+ GRYHGIWSMT  +ASVV PI++S    HG H L A+V   VG A
Sbjct  346  VIAAGIVHRIAPPASGGRYHGIWSMTLAIASVVAPIVSSCSLTHGGHRLVALVTVTVGLA  405

Query  58   GAALCLPLARALRR  71
            GAALCLPLARAL R
Sbjct  406  GAALCLPLARALNR  419


>gi|118616215|ref|YP_904547.1| integral membrane protein [Mycobacterium ulcerans Agy99]
 gi|118568325|gb|ABL03076.1| integral membrane protein [Mycobacterium ulcerans Agy99]
Length=512

 Score = 73.2 bits (178),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 42/71 (60%), Positives = 49/71 (70%), Gaps = 3/71 (4%)

Query  1    VVAASIVHHSAAPANRGRYHGIWSMTPVVASVVVPIMASYGPIHGAHLLAAVV---VGSA  57
            V+A   VH  A PA+ GRYHGIWSMT  +ASVV PI++S    HG H L A+V   VG A
Sbjct  425  VIAVGTVHRIAPPASGGRYHGIWSMTLAIASVVAPIVSSCSLTHGGHRLVALVTVTVGLA  484

Query  58   GAALCLPLARA  68
            GAALCLPL R+
Sbjct  485  GAALCLPLNRS  495


>gi|15840256|ref|NP_335293.1| hypothetical protein MT0864 [Mycobacterium tuberculosis CDC1551]
 gi|148822050|ref|YP_001286804.1| integral membrane protein [Mycobacterium tuberculosis F11]
 gi|167967562|ref|ZP_02549839.1| conserved integral membrane protein [Mycobacterium tuberculosis 
H37Ra]
 38 more sequence titles
 Length=442

 Score = 67.0 bits (162),  Expect = 9e-10, Method: Compositional matrix adjust.
 Identities = 41/72 (57%), Positives = 48/72 (67%), Gaps = 3/72 (4%)

Query  1    VVAASIVHHSAAPANRGRYHGIWSMTPVVASVVVPIMASYGPIHGAHLLAA---VVVGSA  57
            VVAA IVH  A PA+ GRYHGIWSM    +SV  PI+A++   +G  L+ A   V VG  
Sbjct  352  VVAAGIVHRIAPPAHGGRYHGIWSMAVAASSVAAPILAAFNLANGGRLVLAATTVTVGFF  411

Query  58   GAALCLPLARAL  69
            GAALCLPLAR L
Sbjct  412  GAALCLPLARVL  423


>gi|306782120|ref|ZP_07420457.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
 gi|306787874|ref|ZP_07426196.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
 gi|306792215|ref|ZP_07430517.1| conserved membrane protein [Mycobacterium tuberculosis SUMu005]
 gi|308325199|gb|EFP14050.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
 gi|308335473|gb|EFP24324.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
 gi|308339271|gb|EFP28122.1| conserved membrane protein [Mycobacterium tuberculosis SUMu005]
Length=442

 Score = 67.0 bits (162),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 41/72 (57%), Positives = 48/72 (67%), Gaps = 3/72 (4%)

Query  1    VVAASIVHHSAAPANRGRYHGIWSMTPVVASVVVPIMASYGPIHGAHLLAA---VVVGSA  57
            VVAA IVH  A PA+ GRYHGIWSM    +SV  PI+A++   +G  L+ A   V VG  
Sbjct  352  VVAAGIVHRIAPPAHGGRYHGIWSMAVAASSVAAPILAAFNLANGGRLVLAATTVTVGFF  411

Query  58   GAALCLPLARAL  69
            GAALCLPLAR L
Sbjct  412  GAALCLPLARVL  423


>gi|15607982|ref|NP_215357.1| integral membrane protein [Mycobacterium tuberculosis H37Rv]
 gi|31792030|ref|NP_854523.1| integral membrane protein [Mycobacterium bovis AF2122/97]
 gi|121636765|ref|YP_976988.1| putative integral membrane protein [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 27 more sequence titles
 Length=430

 Score = 67.0 bits (162),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 41/72 (57%), Positives = 48/72 (67%), Gaps = 3/72 (4%)

Query  1    VVAASIVHHSAAPANRGRYHGIWSMTPVVASVVVPIMASYGPIHGAHLLAA---VVVGSA  57
            VVAA IVH  A PA+ GRYHGIWSM    +SV  PI+A++   +G  L+ A   V VG  
Sbjct  340  VVAAGIVHRIAPPAHGGRYHGIWSMAVAASSVAAPILAAFNLANGGRLVLAATTVTVGFF  399

Query  58   GAALCLPLARAL  69
            GAALCLPLAR L
Sbjct  400  GAALCLPLARVL  411


>gi|340625856|ref|YP_004744308.1| putative integral membrane protein [Mycobacterium canettii CIPT 
140010059]
 gi|340004046|emb|CCC43182.1| putative conserved integral membrane protein [Mycobacterium canettii 
CIPT 140010059]
Length=430

 Score = 66.6 bits (161),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 41/72 (57%), Positives = 48/72 (67%), Gaps = 3/72 (4%)

Query  1    VVAASIVHHSAAPANRGRYHGIWSMTPVVASVVVPIMASYGPIHGAHLLAA---VVVGSA  57
            VVAA IVH  A PA+ GRYHGIWSM    +SV  PI+A++   +G  L+ A   V VG  
Sbjct  340  VVAAGIVHRIAPPAHGGRYHGIWSMAVAASSVAAPILAAFNLANGGRLVLAATTVTVGFF  399

Query  58   GAALCLPLARAL  69
            GAALCLPLAR L
Sbjct  400  GAALCLPLARVL  411


>gi|289752896|ref|ZP_06512274.1| predicted protein [Mycobacterium tuberculosis EAS054]
 gi|289693483|gb|EFD60912.1| predicted protein [Mycobacterium tuberculosis EAS054]
Length=422

 Score = 66.2 bits (160),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 41/72 (57%), Positives = 48/72 (67%), Gaps = 3/72 (4%)

Query  1    VVAASIVHHSAAPANRGRYHGIWSMTPVVASVVVPIMASYGPIHGAHLLAA---VVVGSA  57
            VVAA IVH  A PA+ GRYHGIWSM    +SV  PI+A++   +G  L+ A   V VG  
Sbjct  332  VVAAGIVHRIAPPAHGGRYHGIWSMAVAASSVAAPILAAFNLANGGRLVLAATTVTVGFF  391

Query  58   GAALCLPLARAL  69
            GAALCLPLAR L
Sbjct  392  GAALCLPLARVL  403


>gi|240170796|ref|ZP_04749455.1| putative integral membrane protein [Mycobacterium kansasii ATCC 
12478]
Length=428

 Score = 60.8 bits (146),  Expect = 6e-08, Method: Compositional matrix adjust.
 Identities = 39/72 (55%), Positives = 44/72 (62%), Gaps = 3/72 (4%)

Query  1    VVAASIVHHSAAPANRGRYHGIWSMTPVVASVVVPIMASYGPIHGAHLL---AAVVVGSA  57
            VV+A IVH    PA+ GRY G+WSMT   A+V  PI+AS    HG  LL   A V  G  
Sbjct  340  VVSAGIVHRITQPASSGRYQGVWSMTTAAAAVTAPILASCSLAHGGRLLMVGATVTAGLL  399

Query  58   GAALCLPLARAL  69
            G ALC PLARAL
Sbjct  400  GTALCAPLARAL  411


>gi|290959946|ref|YP_003491128.1| protein [Streptomyces scabiei 87.22]
 gi|260649472|emb|CBG72587.1| putative integral membrane protein [Streptomyces scabiei 87.22]
Length=442

 Score = 37.0 bits (84),  Expect = 0.97, Method: Compositional matrix adjust.
 Identities = 21/61 (35%), Positives = 36/61 (60%), Gaps = 1/61 (1%)

Query  18   RYHGIWSMTPVVASVVVPIMASYGPIHGAHLLAAVVVGSAGAALCLPLARALRRPTPSAM  77
            R+  I+ + P    ++ P +A +G + G  L A+V++ +AG  L   + RA+R PTP A+
Sbjct  116  RFQRIFEVRPGYPVLLAPFVAVFGVVWGVWL-ASVLIAAAGGVLAFLVLRAVRAPTPVAL  174

Query  78   T  78
            T
Sbjct  175  T  175


>gi|289770214|ref|ZP_06529592.1| integral membrane transporter [Streptomyces lividans TK24]
 gi|289700413|gb|EFD67842.1| integral membrane transporter [Streptomyces lividans TK24]
Length=429

 Score = 36.2 bits (82),  Expect = 1.8, Method: Compositional matrix adjust.
 Identities = 24/58 (42%), Positives = 34/58 (59%), Gaps = 3/58 (5%)

Query  15   NRGRYHGIWSMTPVVASVVVPIMASYGPIH-GAHLLAAV--VVGSAGAALCLPLARAL  69
             RGRY G++SM+  VA++V P+M+ +   H GA  L  +  VVG+  AA    L R L
Sbjct  344  GRGRYQGMYSMSWAVAALVAPLMSGFVIDHWGAEWLWGICAVVGTVAAAGYWGLMRGL  401


>gi|21222604|ref|NP_628383.1| integral membrane transport protein [Streptomyces coelicolor 
A3(2)]
 gi|9857165|emb|CAC04044.1| putative integral membrane transport protein [Streptomyces coelicolor 
A3(2)]
Length=429

 Score = 36.2 bits (82),  Expect = 1.8, Method: Compositional matrix adjust.
 Identities = 24/58 (42%), Positives = 34/58 (59%), Gaps = 3/58 (5%)

Query  15   NRGRYHGIWSMTPVVASVVVPIMASYGPIH-GAHLLAAV--VVGSAGAALCLPLARAL  69
             RGRY G++SM+  VA++V P+M+ +   H GA  L  +  VVG+  AA    L R L
Sbjct  344  GRGRYQGMYSMSWAVAALVAPLMSGFVIDHWGAEWLWGICAVVGTVAAAGYWGLMRGL  401


>gi|254387135|ref|ZP_05002406.1| integral membrane transport protein [Streptomyces sp. Mg1]
 gi|194345951|gb|EDX26917.1| integral membrane transport protein [Streptomyces sp. Mg1]
Length=434

 Score = 34.7 bits (78),  Expect = 5.1, Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 24/30 (80%), Gaps = 1/30 (3%)

Query  12   APAN-RGRYHGIWSMTPVVASVVVPIMASY  40
            +PA+ RGRY G+++M+  VAS+V P+MA +
Sbjct  376  SPADGRGRYQGVYTMSWAVASLVAPLMAGF  405



Lambda     K      H
   0.322    0.131    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128850890930




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40