BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0844c
Length=216
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607984|ref|NP_215359.1| nitrate/nitrite response transcript... 426 2e-117
gi|31792032|ref|NP_854525.1| nitrate/nitrite response transcript... 423 7e-117
gi|289573466|ref|ZP_06453693.1| nitrate/nitrite response transcr... 422 1e-116
gi|289756930|ref|ZP_06516308.1| nitrate/nitrite response transcr... 422 1e-116
gi|289744570|ref|ZP_06503948.1| nitrate/nitrite response transcr... 419 1e-115
gi|240170794|ref|ZP_04749453.1| nitrate/nitrite response regulat... 394 4e-108
gi|183984750|ref|YP_001853041.1| nitrate/nitrite response regula... 390 6e-107
gi|118616214|ref|YP_904546.1| nitrate/nitrite response regulator... 385 2e-105
gi|254820486|ref|ZP_05225487.1| NarL_1 [Mycobacterium intracellu... 360 7e-98
gi|41406787|ref|NP_959623.1| NarL_1 [Mycobacterium avium subsp. ... 355 3e-96
gi|342860346|ref|ZP_08716997.1| NarL_1 [Mycobacterium colombiens... 337 7e-91
gi|296169485|ref|ZP_06851105.1| LuxR family DNA-binding response... 335 2e-90
gi|118471878|ref|YP_884521.1| LuxR family transcriptional regula... 320 1e-85
gi|118464868|ref|YP_880140.1| LuxR family transcriptional regula... 311 6e-83
gi|169627165|ref|YP_001700814.1| nitrate/nitrite response transc... 310 7e-83
gi|145221325|ref|YP_001132003.1| two component LuxR family trans... 309 1e-82
gi|229493089|ref|ZP_04386884.1| DNA-binding response regulator, ... 295 4e-78
gi|333919979|ref|YP_004493560.1| LuxR family DNA-binding respons... 293 9e-78
gi|212375051|pdb|3EUL|A Chain A, Structure Of The Signal Receive... 288 3e-76
gi|111022468|ref|YP_705440.1| response regulator, two-component ... 287 7e-76
gi|226304850|ref|YP_002764808.1| NarL family two-component respo... 281 5e-74
gi|226364986|ref|YP_002782769.1| NarL family two-component respo... 278 4e-73
gi|331699431|ref|YP_004335670.1| two component LuxR family trans... 256 2e-66
gi|343926321|ref|ZP_08765830.1| putative NarL family two-compone... 243 2e-62
gi|258650739|ref|YP_003199895.1| LuxR family two component trans... 227 8e-58
gi|262202270|ref|YP_003273478.1| response regulator receiver [Go... 227 1e-57
gi|240172696|ref|ZP_04751355.1| two component LuxR family transc... 215 4e-54
gi|284046827|ref|YP_003397167.1| LuxR family transcriptional reg... 204 7e-51
gi|333980083|ref|YP_004518028.1| LuxR family two component trans... 157 1e-36
gi|330470343|ref|YP_004408086.1| two component LuxR family trans... 156 2e-36
gi|170783491|ref|YP_001741984.1| putative DNA binding response r... 155 3e-36
gi|326330817|ref|ZP_08197118.1| two-component system response re... 155 4e-36
gi|254425578|ref|ZP_05039295.1| response regulator receiver doma... 155 5e-36
gi|256396087|ref|YP_003117651.1| LuxR family transcriptional reg... 154 6e-36
gi|297157233|gb|ADI06945.1| two component transcriptional regula... 154 7e-36
gi|291443382|ref|ZP_06582772.1| two-component system [Streptomyc... 154 1e-35
gi|239986435|ref|ZP_04707099.1| two component LuxR family transc... 154 1e-35
gi|297158223|gb|ADI07935.1| two component transcriptional regula... 153 1e-35
gi|312199045|ref|YP_004019106.1| LuxR family transcriptional reg... 153 2e-35
gi|284030392|ref|YP_003380323.1| LuxR family two component trans... 152 2e-35
gi|302530526|ref|ZP_07282868.1| two-component system response re... 152 4e-35
gi|302545305|ref|ZP_07297647.1| two-component system response re... 152 4e-35
gi|297191947|ref|ZP_06909345.1| two-component system response re... 151 5e-35
gi|340359188|ref|ZP_08681683.1| two component system response re... 151 6e-35
gi|345015257|ref|YP_004817611.1| LuxR family two component trans... 151 6e-35
gi|88856002|ref|ZP_01130664.1| two-component response regulator ... 150 1e-34
gi|297559326|ref|YP_003678300.1| LuxR family transcriptional reg... 150 1e-34
gi|256396450|ref|YP_003118014.1| LuxR family transcriptional reg... 150 1e-34
gi|345010663|ref|YP_004813017.1| LuxR family two component trans... 149 2e-34
gi|271961856|ref|YP_003336052.1| response regulator receiver pro... 149 2e-34
>gi|15607984|ref|NP_215359.1| nitrate/nitrite response transcriptional regulatory protein NarL
[Mycobacterium tuberculosis H37Rv]
gi|15840258|ref|NP_335295.1| LuxR family DNA-binding response regulator [Mycobacterium tuberculosis
CDC1551]
gi|121636767|ref|YP_976990.1| putative nitrate/nitrite response transcriptional regulatory
protein narL [Mycobacterium bovis BCG str. Pasteur 1173P2]
65 more sequence titles
Length=216
Score = 426 bits (1094), Expect = 2e-117, Method: Compositional matrix adjust.
Identities = 216/216 (100%), Positives = 216/216 (100%), Gaps = 0/216 (0%)
Query 1 MSNPQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALL 60
MSNPQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALL
Sbjct 1 MSNPQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALL 60
Query 61 DYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVK 120
DYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVK
Sbjct 61 DYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVK 120
Query 121 AVLDCAKGRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELY 180
AVLDCAKGRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELY
Sbjct 121 AVLDCAKGRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELY 180
Query 181 VAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQRLLD 216
VAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQRLLD
Sbjct 181 VAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQRLLD 216
>gi|31792032|ref|NP_854525.1| nitrate/nitrite response transcriptional regulatory protein NarL
[Mycobacterium bovis AF2122/97]
gi|31617619|emb|CAD93729.1| POSSIBLE NITRATE/NITRITE RESPONSE TRANSCRIPTIONAL REGULATORY
PROTEIN NARL [Mycobacterium bovis AF2122/97]
Length=216
Score = 423 bits (1088), Expect = 7e-117, Method: Compositional matrix adjust.
Identities = 215/216 (99%), Positives = 215/216 (99%), Gaps = 0/216 (0%)
Query 1 MSNPQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALL 60
MSNPQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALL
Sbjct 1 MSNPQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALL 60
Query 61 DYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVK 120
DYRMPGMDGAQV AAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVK
Sbjct 61 DYRMPGMDGAQVPAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVK 120
Query 121 AVLDCAKGRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELY 180
AVLDCAKGRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELY
Sbjct 121 AVLDCAKGRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELY 180
Query 181 VAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQRLLD 216
VAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQRLLD
Sbjct 181 VAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQRLLD 216
>gi|289573466|ref|ZP_06453693.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium
tuberculosis K85]
gi|339630909|ref|YP_004722551.1| NarL family transcriptional regulator [Mycobacterium africanum
GM041182]
gi|289537897|gb|EFD42475.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium
tuberculosis K85]
gi|339330265|emb|CCC25925.1| putative nitrate/nitrite response transcriptional regulatory
protein NARL [Mycobacterium africanum GM041182]
Length=216
Score = 422 bits (1086), Expect = 1e-116, Method: Compositional matrix adjust.
Identities = 215/216 (99%), Positives = 215/216 (99%), Gaps = 0/216 (0%)
Query 1 MSNPQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALL 60
MSNPQPEKVRVVVGDDH LFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALL
Sbjct 1 MSNPQPEKVRVVVGDDHLLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALL 60
Query 61 DYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVK 120
DYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVK
Sbjct 61 DYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVK 120
Query 121 AVLDCAKGRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELY 180
AVLDCAKGRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELY
Sbjct 121 AVLDCAKGRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELY 180
Query 181 VAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQRLLD 216
VAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQRLLD
Sbjct 181 VAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQRLLD 216
>gi|289756930|ref|ZP_06516308.1| nitrate/nitrite response transcriptional regulatory protein narL
[Mycobacterium tuberculosis T85]
gi|294996325|ref|ZP_06802016.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium
tuberculosis 210]
gi|298524337|ref|ZP_07011746.1| nitrate/nitrite response regulator protein NarL [Mycobacterium
tuberculosis 94_M4241A]
gi|289712494|gb|EFD76506.1| nitrate/nitrite response transcriptional regulatory protein narL
[Mycobacterium tuberculosis T85]
gi|298494131|gb|EFI29425.1| nitrate/nitrite response regulator protein NarL [Mycobacterium
tuberculosis 94_M4241A]
gi|326904936|gb|EGE51869.1| nitrate/nitrite response transcriptional regulator narL [Mycobacterium
tuberculosis W-148]
gi|339293858|gb|AEJ45969.1| nitrate/nitrite response transcriptional regulatory protein narL
[Mycobacterium tuberculosis CCDC5079]
gi|339297499|gb|AEJ49609.1| nitrate/nitrite response transcriptional regulatory protein narL
[Mycobacterium tuberculosis CCDC5180]
Length=216
Score = 422 bits (1086), Expect = 1e-116, Method: Compositional matrix adjust.
Identities = 215/216 (99%), Positives = 215/216 (99%), Gaps = 0/216 (0%)
Query 1 MSNPQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALL 60
MSNPQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALL
Sbjct 1 MSNPQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALL 60
Query 61 DYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVK 120
DYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVK
Sbjct 61 DYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVK 120
Query 121 AVLDCAKGRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELY 180
AVLDCAKGRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIAC QSIPAIAAELY
Sbjct 121 AVLDCAKGRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACRQSIPAIAAELY 180
Query 181 VAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQRLLD 216
VAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQRLLD
Sbjct 181 VAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQRLLD 216
>gi|289744570|ref|ZP_06503948.1| nitrate/nitrite response transcriptional regulatory protein narL
[Mycobacterium tuberculosis 02_1987]
gi|289685098|gb|EFD52586.1| nitrate/nitrite response transcriptional regulatory protein narL
[Mycobacterium tuberculosis 02_1987]
Length=216
Score = 419 bits (1078), Expect = 1e-115, Method: Compositional matrix adjust.
Identities = 214/216 (99%), Positives = 214/216 (99%), Gaps = 0/216 (0%)
Query 1 MSNPQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALL 60
MSNPQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALL
Sbjct 1 MSNPQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALL 60
Query 61 DYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVK 120
DYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVK
Sbjct 61 DYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVK 120
Query 121 AVLDCAKGRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELY 180
AVLDCAKGRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIAC QSIPAIAAE Y
Sbjct 121 AVLDCAKGRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACRQSIPAIAAERY 180
Query 181 VAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQRLLD 216
VAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQRLLD
Sbjct 181 VAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQRLLD 216
>gi|240170794|ref|ZP_04749453.1| nitrate/nitrite response regulator protein NarL [Mycobacterium
kansasii ATCC 12478]
Length=214
Score = 394 bits (1013), Expect = 4e-108, Method: Compositional matrix adjust.
Identities = 202/211 (96%), Positives = 203/211 (97%), Gaps = 0/211 (0%)
Query 6 PEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMP 65
PEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGA ALELIK LPDVALLDYRMP
Sbjct 4 PEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGATALELIKTELPDVALLDYRMP 63
Query 66 GMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDC 125
GMDGAQVAAAVRSY+LPTRVLLISAHDE AIVYQALQQGAAGFLLKDSTRTEIVKAVLDC
Sbjct 64 GMDGAQVAAAVRSYDLPTRVLLISAHDESAIVYQALQQGAAGFLLKDSTRTEIVKAVLDC 123
Query 126 AKGRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELYVAPST 185
AKGRDVVAPSLVGGLAGEIRQRAAP APVLSAREREVLNRIA GQSIPAIA ELYVAPST
Sbjct 124 AKGRDVVAPSLVGGLAGEIRQRAAPTAPVLSAREREVLNRIARGQSIPAIAGELYVAPST 183
Query 186 VKTHVQRLYEKLGVSDRAAAVAEAMRQRLLD 216
VKTHVQRLYEKLGVSDRAAAVAEAMRQ LLD
Sbjct 184 VKTHVQRLYEKLGVSDRAAAVAEAMRQGLLD 214
>gi|183984750|ref|YP_001853041.1| nitrate/nitrite response regulator protein NarL [Mycobacterium
marinum M]
gi|183178076|gb|ACC43186.1| nitrate/nitrite response regulator protein NarL [Mycobacterium
marinum M]
Length=216
Score = 390 bits (1002), Expect = 6e-107, Method: Compositional matrix adjust.
Identities = 202/216 (94%), Positives = 205/216 (95%), Gaps = 0/216 (0%)
Query 1 MSNPQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALL 60
M + EKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIK HLPDVALL
Sbjct 1 MDVTKTEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKTHLPDVALL 60
Query 61 DYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVK 120
DYRMP MDGAQVAAAVRS ELPTRVLLISAHDE AIVYQALQQGAAGFLLKDSTRTEIVK
Sbjct 61 DYRMPRMDGAQVAAAVRSNELPTRVLLISAHDESAIVYQALQQGAAGFLLKDSTRTEIVK 120
Query 121 AVLDCAKGRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELY 180
AVLDCAKGRDVVAPSLVGGLAGEIRQRAAP+APVLSAREREVL+RIA GQSIPAIA ELY
Sbjct 121 AVLDCAKGRDVVAPSLVGGLAGEIRQRAAPMAPVLSAREREVLHRIAKGQSIPAIAGELY 180
Query 181 VAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQRLLD 216
VAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQ LLD
Sbjct 181 VAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQGLLD 216
>gi|118616214|ref|YP_904546.1| nitrate/nitrite response regulator protein NarL [Mycobacterium
ulcerans Agy99]
gi|118568324|gb|ABL03075.1| nitrate/nitrite response regulator protein NarL [Mycobacterium
ulcerans Agy99]
Length=216
Score = 385 bits (989), Expect = 2e-105, Method: Compositional matrix adjust.
Identities = 200/216 (93%), Positives = 204/216 (95%), Gaps = 0/216 (0%)
Query 1 MSNPQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALL 60
M + EKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELI+ HLPDVALL
Sbjct 1 MDVTKTEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIETHLPDVALL 60
Query 61 DYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVK 120
DYRMP MDGAQVAAAVRS LPTRVLLISAHDE AIVYQALQQGAAGFLLKDSTRTEIVK
Sbjct 61 DYRMPRMDGAQVAAAVRSNGLPTRVLLISAHDESAIVYQALQQGAAGFLLKDSTRTEIVK 120
Query 121 AVLDCAKGRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELY 180
AVLDCAKGRDVVAPSLVGGLAGEIRQRAAP+APVLSAREREVL+RIA GQSIPAIA ELY
Sbjct 121 AVLDCAKGRDVVAPSLVGGLAGEIRQRAAPMAPVLSAREREVLHRIAKGQSIPAIAGELY 180
Query 181 VAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQRLLD 216
VAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQ LLD
Sbjct 181 VAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQGLLD 216
>gi|254820486|ref|ZP_05225487.1| NarL_1 [Mycobacterium intracellulare ATCC 13950]
Length=217
Score = 360 bits (924), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 186/211 (89%), Positives = 193/211 (92%), Gaps = 0/211 (0%)
Query 6 PEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMP 65
PE VRVVV DDHPLFREGVVRALS SGSVNVV EA+DG+AALELIK H PDVALLDYRMP
Sbjct 7 PETVRVVVADDHPLFREGVVRALSSSGSVNVVAEAEDGSAALELIKVHEPDVALLDYRMP 66
Query 66 GMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDC 125
GMDGAQVAAAVR+ L TRVLLISAHDE AIVYQALQQGAAGF+LKDSTR EIVKAVLDC
Sbjct 67 GMDGAQVAAAVRTQGLATRVLLISAHDESAIVYQALQQGAAGFVLKDSTRGEIVKAVLDC 126
Query 126 AKGRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELYVAPST 185
A+GRDVVAP+LVGGLA EIRQRA P APVLSAREREVLNRIA GQSIP IA ELYVAPST
Sbjct 127 AQGRDVVAPALVGGLAAEIRQRAEPSAPVLSAREREVLNRIARGQSIPTIAGELYVAPST 186
Query 186 VKTHVQRLYEKLGVSDRAAAVAEAMRQRLLD 216
VKTHVQRLYEKLGVSDRAAAVAEAMRQ LL+
Sbjct 187 VKTHVQRLYEKLGVSDRAAAVAEAMRQGLLN 217
>gi|41406787|ref|NP_959623.1| NarL_1 [Mycobacterium avium subsp. paratuberculosis K-10]
gi|254773764|ref|ZP_05215280.1| NarL_1 [Mycobacterium avium subsp. avium ATCC 25291]
gi|41395137|gb|AAS03006.1| NarL_1 [Mycobacterium avium subsp. paratuberculosis K-10]
gi|336461179|gb|EGO40057.1| response regulator with a CheY-like receiver domain-containing
protein [Mycobacterium avium subsp. paratuberculosis S397]
Length=217
Score = 355 bits (911), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 185/216 (86%), Positives = 197/216 (92%), Gaps = 1/216 (0%)
Query 1 MSNPQP-EKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVAL 59
M++P E VRVVV DDHPLFREGVVRAL SG+VNVVGEA+DG+AALELIK+H PDVAL
Sbjct 1 MADPATRETVRVVVADDHPLFREGVVRALVSSGAVNVVGEAEDGSAALELIKSHQPDVAL 60
Query 60 LDYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIV 119
LDYRMPGMDGAQVAAAVR+ L TRVLLISAHDE AIVYQALQQGAAGF+LKDSTR+EIV
Sbjct 61 LDYRMPGMDGAQVAAAVRADGLATRVLLISAHDESAIVYQALQQGAAGFVLKDSTRSEIV 120
Query 120 KAVLDCAKGRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAEL 179
KAVLDCA+GRDVVAP+LVGGLA EIRQRA P PVLSAREREVL+RIA GQSIPAIA EL
Sbjct 121 KAVLDCAQGRDVVAPALVGGLAAEIRQRAEPTGPVLSAREREVLHRIARGQSIPAIAGEL 180
Query 180 YVAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQRLL 215
YVAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQ LL
Sbjct 181 YVAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQGLL 216
>gi|342860346|ref|ZP_08716997.1| NarL_1 [Mycobacterium colombiense CECT 3035]
gi|342132001|gb|EGT85242.1| NarL_1 [Mycobacterium colombiense CECT 3035]
Length=209
Score = 337 bits (864), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 182/207 (88%), Positives = 193/207 (94%), Gaps = 0/207 (0%)
Query 9 VRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPGMD 68
VRVVVGDDHPLFREGVVRAL SGSV+VVGEA+DG+AALELIK+H PDVALLDYRMPGMD
Sbjct 2 VRVVVGDDHPLFREGVVRALVSSGSVSVVGEAEDGSAALELIKSHAPDVALLDYRMPGMD 61
Query 69 GAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKG 128
GAQVAAAVR+ L TRVLLISAHDE AIVYQALQQGAAGF+LKDSTR+EIV+AVLDCA+G
Sbjct 62 GAQVAAAVRTQGLATRVLLISAHDESAIVYQALQQGAAGFVLKDSTRSEIVRAVLDCAQG 121
Query 129 RDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELYVAPSTVKT 188
DVVAP+LVGGLA EIRQRA P APVLSAREREVLNRIA GQSIPAIA EL+VAPSTVKT
Sbjct 122 LDVVAPALVGGLAAEIRQRAEPSAPVLSAREREVLNRIARGQSIPAIAGELFVAPSTVKT 181
Query 189 HVQRLYEKLGVSDRAAAVAEAMRQRLL 215
HVQRLYEKLGVSDRAAAVAEAMRQ LL
Sbjct 182 HVQRLYEKLGVSDRAAAVAEAMRQGLL 208
>gi|296169485|ref|ZP_06851105.1| LuxR family DNA-binding response regulator [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295895751|gb|EFG75446.1| LuxR family DNA-binding response regulator [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=201
Score = 335 bits (860), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 177/216 (82%), Positives = 185/216 (86%), Gaps = 17/216 (7%)
Query 1 MSNP-QPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVAL 59
M++P PEKVRVVVGDDHPLFREGVVRALS SGSV V+GEADDGAAALELIK +PDVAL
Sbjct 1 MASPATPEKVRVVVGDDHPLFREGVVRALSSSGSVTVIGEADDGAAALELIKERVPDVAL 60
Query 60 LDYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIV 119
LDYRMPGMDG QVAAAVRS ELPTR LLISAHDEPAIVYQALQQGAAGF+LKDSTR+EIV
Sbjct 61 LDYRMPGMDGGQVAAAVRSQELPTRALLISAHDEPAIVYQALQQGAAGFVLKDSTRSEIV 120
Query 120 KAVLDCAKGRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAEL 179
KAVLDCA+GRDVVAP+LVGGL EIR RAAP PVLSAREREVLN
Sbjct 121 KAVLDCAQGRDVVAPALVGGLTAEIRHRAAPTGPVLSAREREVLN--------------- 165
Query 180 YVAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQRLL 215
VAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQ LL
Sbjct 166 -VAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQGLL 200
>gi|118471878|ref|YP_884521.1| LuxR family transcriptional regulator [Mycobacterium smegmatis
str. MC2 155]
gi|118173165|gb|ABK74061.1| DNA-binding response regulator, LuxR family protein [Mycobacterium
smegmatis str. MC2 155]
Length=216
Score = 320 bits (819), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 165/216 (77%), Positives = 182/216 (85%), Gaps = 0/216 (0%)
Query 1 MSNPQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALL 60
M +KVRVVVGDDHP+FREGVVRAL+ SG ++VV EAD+GA ALELIK H P VALL
Sbjct 1 MLTRMSDKVRVVVGDDHPMFREGVVRALTSSGDIDVVAEADNGADALELIKVHRPAVALL 60
Query 61 DYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVK 120
DYRMP +DGAQVAAAV ELPTRVLL+SAHDE AIVY ALQQGAAGFL K+STR+E+V
Sbjct 61 DYRMPQLDGAQVAAAVVRDELPTRVLLVSAHDESAIVYSALQQGAAGFLSKESTRSELVS 120
Query 121 AVLDCAKGRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELY 180
AVL CAKGRDV+ P L GLAGEIR+R P PVLS REREVLN IA G+SIPA+A ELY
Sbjct 121 AVLSCAKGRDVITPHLAAGLAGEIRRRNEPDVPVLSPREREVLNLIAQGRSIPAMAKELY 180
Query 181 VAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQRLLD 216
+APSTVKTHVQRLYEKLGVSDRAAAVAEAMR+ LLD
Sbjct 181 LAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRRHLLD 216
>gi|118464868|ref|YP_880140.1| LuxR family transcriptional regulator [Mycobacterium avium 104]
gi|118166155|gb|ABK67052.1| DNA-binding response regulator, LuxR family protein [Mycobacterium
avium 104]
Length=183
Score = 311 bits (796), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 160/182 (88%), Positives = 170/182 (94%), Gaps = 0/182 (0%)
Query 34 VNVVGEADDGAAALELIKAHLPDVALLDYRMPGMDGAQVAAAVRSYELPTRVLLISAHDE 93
+NVVGEA+DG+AALELIK+H PDVALLDYRMPGMDGAQVAAAVR+ L TRVLLISAHDE
Sbjct 1 MNVVGEAEDGSAALELIKSHQPDVALLDYRMPGMDGAQVAAAVRADGLATRVLLISAHDE 60
Query 94 PAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRDVVAPSLVGGLAGEIRQRAAPVAP 153
AIVYQALQQGAAGF+LKDSTR+EIVKAVLDCA+GRDVVAP+LVGGLA EIRQRA P P
Sbjct 61 SAIVYQALQQGAAGFVLKDSTRSEIVKAVLDCAQGRDVVAPALVGGLAAEIRQRAEPTGP 120
Query 154 VLSAREREVLNRIACGQSIPAIAAELYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQR 213
VLSAREREVL+RIA GQSIPAIA ELYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQ
Sbjct 121 VLSAREREVLHRIARGQSIPAIAGELYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQG 180
Query 214 LL 215
LL
Sbjct 181 LL 182
>gi|169627165|ref|YP_001700814.1| nitrate/nitrite response transcriptional regulatory protein NarL
[Mycobacterium abscessus ATCC 19977]
gi|169239132|emb|CAM60160.1| Possible nitrate/nitrite response transcriptional regulatory
protein NarL (LuxR family) [Mycobacterium abscessus]
Length=215
Score = 310 bits (795), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 157/210 (75%), Positives = 179/210 (86%), Gaps = 0/210 (0%)
Query 7 EKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPG 66
E VRVVVGDDHPLFREGVVRAL+ SG + VV EA++G ALELI+ H PDVAL+DYRMP
Sbjct 6 ELVRVVVGDDHPLFREGVVRALTASGQITVVAEAENGTGALELIREHRPDVALVDYRMPE 65
Query 67 MDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCA 126
+DG QVAAAVR ELPTRVLL+SAHD+ AIVY+AL++GAAGFL K+STRTE+V AVLDCA
Sbjct 66 LDGTQVAAAVRRDELPTRVLLLSAHDDAAIVYRALEEGAAGFLSKESTRTELVGAVLDCA 125
Query 127 KGRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELYVAPSTV 186
+GRDVVA SL GLAGEIR+RA P P LS REREVL IA GQ++PAIA L++APSTV
Sbjct 126 RGRDVVAASLTAGLAGEIRKRAQPAGPSLSTREREVLRMIAAGQTVPAIARALFLAPSTV 185
Query 187 KTHVQRLYEKLGVSDRAAAVAEAMRQRLLD 216
KTHVQRLYEKLGV DRAAAVAEAMR+ LL+
Sbjct 186 KTHVQRLYEKLGVGDRAAAVAEAMRRGLLE 215
>gi|145221325|ref|YP_001132003.1| two component LuxR family transcriptional regulator [Mycobacterium
gilvum PYR-GCK]
gi|315441791|ref|YP_004074670.1| response regulator containing a CheY-like receiver domain and
an HTH DNA-binding domain [Mycobacterium sp. Spyr1]
gi|145213811|gb|ABP43215.1| two component transcriptional regulator, LuxR family [Mycobacterium
gilvum PYR-GCK]
gi|315260094|gb|ADT96835.1| response regulator containing a CheY-like receiver domain and
an HTH DNA-binding domain [Mycobacterium sp. Spyr1]
Length=214
Score = 309 bits (792), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 159/211 (76%), Positives = 179/211 (85%), Gaps = 0/211 (0%)
Query 6 PEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMP 65
P +VRVVVGDDHP+FR+GVVRAL SG+++VV EADDG AAL I+ H P VALLDYRMP
Sbjct 4 PGRVRVVVGDDHPMFRDGVVRALQSSGAIDVVAEADDGTAALAAIREHRPAVALLDYRMP 63
Query 66 GMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDC 125
GMDGA+VAAAV+ LPTRVLLISAHDE AIVY+AL GAAGFL K+STR E++ AVLDC
Sbjct 64 GMDGAEVAAAVQRGALPTRVLLISAHDESAIVYRALADGAAGFLPKESTRNELITAVLDC 123
Query 126 AKGRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELYVAPST 185
AKGRDVVAPSL GLAGEIR+RA P P LS REREVL IA G +IPA+A EL++APST
Sbjct 124 AKGRDVVAPSLAAGLAGEIRRRAEPEGPALSPREREVLVLIAAGSTIPAMARELFLAPST 183
Query 186 VKTHVQRLYEKLGVSDRAAAVAEAMRQRLLD 216
VKTHVQRLYEKLGVSDR AAVAEAMR++LLD
Sbjct 184 VKTHVQRLYEKLGVSDRGAAVAEAMRRKLLD 214
>gi|229493089|ref|ZP_04386884.1| DNA-binding response regulator, LuxR family [Rhodococcus erythropolis
SK121]
gi|229320119|gb|EEN85945.1| DNA-binding response regulator, LuxR family [Rhodococcus erythropolis
SK121]
Length=219
Score = 295 bits (754), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 152/215 (71%), Positives = 176/215 (82%), Gaps = 0/215 (0%)
Query 2 SNPQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLD 61
+ P KV VVVGDDHPLFREGVVRAL+ S S++V+GEADDGAAAL +I+ P VALLD
Sbjct 5 TKPLAGKVSVVVGDDHPLFREGVVRALTGSDSIDVLGEADDGAAALAMIRELRPQVALLD 64
Query 62 YRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKA 121
+RMP +DG QVAAAV ELPTRVLL+SAHDE ++VYQALQ GAAGFL K+STR EIV A
Sbjct 65 FRMPHLDGTQVAAAVVRDELPTRVLLLSAHDESSVVYQALQAGAAGFLPKESTRAEIVSA 124
Query 122 VLDCAKGRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELYV 181
VLDCA GRDV+ PS+ GL GE+R+R+ P P LSAREREVL IA G SIP IA++L++
Sbjct 125 VLDCAAGRDVLPPSIAAGLVGEVRRRSEPSGPTLSAREREVLGLIAQGASIPVIASQLFL 184
Query 182 APSTVKTHVQRLYEKLGVSDRAAAVAEAMRQRLLD 216
APSTVKTHVQRLYEKLGV+DR AAVA AMRQ LL+
Sbjct 185 APSTVKTHVQRLYEKLGVNDRGAAVAAAMRQGLLE 219
>gi|333919979|ref|YP_004493560.1| LuxR family DNA-binding response regulator [Amycolicicoccus subflavus
DQS3-9A1]
gi|333482200|gb|AEF40760.1| DNA-binding response regulator, LuxR family [Amycolicicoccus
subflavus DQS3-9A1]
Length=212
Score = 293 bits (751), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 149/210 (71%), Positives = 175/210 (84%), Gaps = 0/210 (0%)
Query 7 EKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPG 66
EK+RVVVGDDHPLFR+GVVRAL+ SGS++VVGEADDG AL LI+ H P VALLDYRMP
Sbjct 3 EKIRVVVGDDHPLFRDGVVRALTASGSIDVVGEADDGVGALALIREHRPHVALLDYRMPQ 62
Query 67 MDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCA 126
+DG QVAAAV ELPTRVLL+SAH+E AIVY+ALQ+GAAGFL K+STR EI++AVLD A
Sbjct 63 LDGTQVAAAVHRDELPTRVLLLSAHNESAIVYRALQEGAAGFLPKESTRAEIIRAVLDAA 122
Query 127 KGRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELYVAPSTV 186
+G++V+ L GL EIR+R P PVLS REREVL +A G SIPA++ ++Y+APSTV
Sbjct 123 RGKEVLPAGLAAGLISEIRRRNQPAGPVLSPREREVLAFMAQGMSIPAMSRQMYLAPSTV 182
Query 187 KTHVQRLYEKLGVSDRAAAVAEAMRQRLLD 216
KTHVQRLYEKLGVSDRAAAVAEAMR LL+
Sbjct 183 KTHVQRLYEKLGVSDRAAAVAEAMRHGLLE 212
>gi|212375051|pdb|3EUL|A Chain A, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
gi|212375052|pdb|3EUL|B Chain B, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
gi|212375053|pdb|3EUL|C Chain C, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
gi|212375054|pdb|3EUL|D Chain D, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
Length=152
Score = 288 bits (738), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 145/145 (100%), Positives = 145/145 (100%), Gaps = 0/145 (0%)
Query 1 MSNPQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALL 60
MSNPQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALL
Sbjct 8 MSNPQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALL 67
Query 61 DYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVK 120
DYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVK
Sbjct 68 DYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVK 127
Query 121 AVLDCAKGRDVVAPSLVGGLAGEIR 145
AVLDCAKGRDVVAPSLVGGLAGEIR
Sbjct 128 AVLDCAKGRDVVAPSLVGGLAGEIR 152
>gi|111022468|ref|YP_705440.1| response regulator, two-component system [Rhodococcus jostii
RHA1]
gi|110821998|gb|ABG97282.1| response regulator, two-component system [Rhodococcus jostii
RHA1]
Length=211
Score = 287 bits (735), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 160/208 (77%), Positives = 178/208 (86%), Gaps = 0/208 (0%)
Query 9 VRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPGMD 68
VRVVVGDDHP+FR+GVVRAL SG + VVGEADDGAAAL LI+ PDVALLDYRMP +D
Sbjct 4 VRVVVGDDHPIFRDGVVRALLASGDIEVVGEADDGAAALALIRELAPDVALLDYRMPELD 63
Query 69 GAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKG 128
G+QVAAAVR EL TRVLL+SAHDE AIVY ALQ+GAAGFL K+STR EIVKAVLDCA+G
Sbjct 64 GSQVAAAVRRAELATRVLLLSAHDESAIVYHALQEGAAGFLPKESTRAEIVKAVLDCAQG 123
Query 129 RDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELYVAPSTVKT 188
RDV+ SL GLAGE+R+R+ PV P LS RE+EVL IA GQSIP IA ELY+APSTVKT
Sbjct 124 RDVLPASLAVGLAGEVRRRSEPVGPALSGREKEVLALIARGQSIPTIAGELYLAPSTVKT 183
Query 189 HVQRLYEKLGVSDRAAAVAEAMRQRLLD 216
HVQRLYEKLGVSDRAAAVAEAMR+ LL+
Sbjct 184 HVQRLYEKLGVSDRAAAVAEAMRRGLLE 211
>gi|226304850|ref|YP_002764808.1| NarL family two-component response regulator [Rhodococcus erythropolis
PR4]
gi|226183965|dbj|BAH32069.1| putative NarL family two-component response regulator [Rhodococcus
erythropolis PR4]
Length=219
Score = 281 bits (718), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 143/202 (71%), Positives = 167/202 (83%), Gaps = 0/202 (0%)
Query 15 DDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPGMDGAQVAA 74
DDHPLFREGVVRAL+ S ++V+GEADDGAAAL +I+ P VAL+D+RMP +DG QVAA
Sbjct 18 DDHPLFREGVVRALTGSDRIDVLGEADDGAAALAMIRELRPKVALIDFRMPHLDGTQVAA 77
Query 75 AVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRDVVAP 134
AV ELPTRVLL+SAHDE ++VYQALQ GAAGFL K+STR EIV AVLDCA GRDV+ P
Sbjct 78 AVVRDELPTRVLLLSAHDESSVVYQALQAGAAGFLPKESTRAEIVSAVLDCAAGRDVLPP 137
Query 135 SLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELYVAPSTVKTHVQRLY 194
S+ GL GE+R+R+ P P LSAREREVL IA G SIP IA++L++APSTVKTHVQRLY
Sbjct 138 SIAAGLVGEVRRRSEPSGPTLSAREREVLGLIAQGASIPTIASQLFLAPSTVKTHVQRLY 197
Query 195 EKLGVSDRAAAVAEAMRQRLLD 216
EKLGV+DR AAVA AMRQ LL+
Sbjct 198 EKLGVNDRGAAVAAAMRQGLLE 219
>gi|226364986|ref|YP_002782769.1| NarL family two-component response regulator [Rhodococcus opacus
B4]
gi|226243476|dbj|BAH53824.1| putative NarL family two-component response regulator [Rhodococcus
opacus B4]
Length=223
Score = 278 bits (711), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 155/203 (77%), Positives = 173/203 (86%), Gaps = 0/203 (0%)
Query 14 GDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPGMDGAQVA 73
GDDHP+FR+GVVRAL SG + VVGEADDGAAAL LI+ PDVALLDYRMP +DG+QVA
Sbjct 21 GDDHPIFRDGVVRALLASGDIEVVGEADDGAAALALIRELAPDVALLDYRMPELDGSQVA 80
Query 74 AAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRDVVA 133
AAVR EL TRVLL+SAHDE AIVY ALQ+GAAGFL K+STR EIVKAVLDCA+GRDV+
Sbjct 81 AAVRRAELATRVLLLSAHDESAIVYHALQEGAAGFLPKESTRAEIVKAVLDCAQGRDVLP 140
Query 134 PSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELYVAPSTVKTHVQRL 193
SL GLAGE+R+R+ P PVLS RE+EVL IA GQSIP IA ELY+APSTVKTHVQRL
Sbjct 141 ASLAVGLAGEVRRRSEPAGPVLSGREKEVLALIARGQSIPTIAGELYLAPSTVKTHVQRL 200
Query 194 YEKLGVSDRAAAVAEAMRQRLLD 216
YEKLGVSDRAAAVAEAMR+ LL+
Sbjct 201 YEKLGVSDRAAAVAEAMRRGLLE 223
>gi|331699431|ref|YP_004335670.1| two component LuxR family transcriptional regulator [Pseudonocardia
dioxanivorans CB1190]
gi|326954120|gb|AEA27817.1| two component transcriptional regulator, LuxR family [Pseudonocardia
dioxanivorans CB1190]
Length=215
Score = 256 bits (653), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 134/209 (65%), Positives = 154/209 (74%), Gaps = 0/209 (0%)
Query 8 KVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPGM 67
+VRVVV DDHP FR+GV R L+ SG V VV EADDG AL+ I+ H PDVAL+DY MP +
Sbjct 7 RVRVVVADDHPFFRDGVARGLTTSGRVEVVAEADDGRQALDAIREHSPDVALVDYEMPDI 66
Query 68 DGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAK 127
DG V A L TRVLL+SAH + A+V+QALQ+GAAG+L KDS R EIV AVLD AK
Sbjct 67 DGLGVVRATVRDGLATRVLLLSAHTDSAVVFQALQEGAAGYLAKDSRRAEIVAAVLDVAK 126
Query 128 GRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELYVAPSTVK 187
GR VV P L GLAGEIR RA P LS REREVL A G S+P +A EL++ STVK
Sbjct 127 GRTVVPPELAAGLAGEIRMRAQTTGPALSEREREVLQAFARGLSVPQVAGELFIGVSTVK 186
Query 188 THVQRLYEKLGVSDRAAAVAEAMRQRLLD 216
THVQRLYEKLGVSDRAAAVAE MR+ L++
Sbjct 187 THVQRLYEKLGVSDRAAAVAEGMRRGLVE 215
>gi|343926321|ref|ZP_08765830.1| putative NarL family two-component response regulator [Gordonia
alkanivorans NBRC 16433]
gi|343763950|dbj|GAA12756.1| putative NarL family two-component response regulator [Gordonia
alkanivorans NBRC 16433]
Length=212
Score = 243 bits (619), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 132/208 (64%), Positives = 155/208 (75%), Gaps = 0/208 (0%)
Query 9 VRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPGMD 68
V VV DDHP FR+GV R L+ SG V VVGEA DGAA LELI+ PDVA++D++MPGM
Sbjct 5 VTAVVVDDHPFFRDGVSRGLTQSGRVRVVGEAADGAAGLELIRRENPDVAVVDHQMPGMT 64
Query 69 GAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKG 128
G ++A AV +LPTRVLL+SA E IV++ALQ+GAAG+L KD+ R EIV AV AKG
Sbjct 65 GVELAHAVTRDKLPTRVLLLSAVTEGPIVFRALQEGAAGYLSKDADRDEIVGAVTRVAKG 124
Query 129 RDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELYVAPSTVKT 188
VV P L GLAGEIR + AP LS RER+VL A GQSIP +AAELY+ +TVKT
Sbjct 125 ETVVPPGLAAGLAGEIRAQTQRDAPALSERERQVLAGFARGQSIPQVAAELYIGAATVKT 184
Query 189 HVQRLYEKLGVSDRAAAVAEAMRQRLLD 216
H QRLYEKLGVSDRAAAVAEAMR+ LL+
Sbjct 185 HTQRLYEKLGVSDRAAAVAEAMRRGLLE 212
>gi|258650739|ref|YP_003199895.1| LuxR family two component transcriptional regulator [Nakamurella
multipartita DSM 44233]
gi|258553964|gb|ACV76906.1| two component transcriptional regulator, LuxR family [Nakamurella
multipartita DSM 44233]
Length=215
Score = 227 bits (579), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 119/209 (57%), Positives = 151/209 (73%), Gaps = 0/209 (0%)
Query 8 KVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPGM 67
++ VVV DDHP FR+GV R L+ SG + VV EA++G L I H P VA++DY++P +
Sbjct 7 RIEVVVIDDHPFFRDGVSRGLTNSGLITVVAEAENGRDGLAAIAEHRPQVAVVDYQLPDL 66
Query 68 DGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAK 127
DG + AV +LPT+VLL+SA + A+V++AL+ GA+G+L KD+ R EIV AVL ++
Sbjct 67 DGIAITQAVVRDQLPTKVLLLSAITDSAVVFRALEVGASGYLSKDARRAEIVDAVLTVSR 126
Query 128 GRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELYVAPSTVK 187
G+ VV P L G LA EIR RA P PVLS RE +VL A GQSIP +A ELY+ STVK
Sbjct 127 GKTVVPPELAGSLAQEIRLRAQPTGPVLSERELQVLRGFARGQSIPQLAKELYIGASTVK 186
Query 188 THVQRLYEKLGVSDRAAAVAEAMRQRLLD 216
TH QRLYEKLGVSDRAAAVAEAMR+ LL+
Sbjct 187 THTQRLYEKLGVSDRAAAVAEAMRRGLLE 215
>gi|262202270|ref|YP_003273478.1| response regulator receiver [Gordonia bronchialis DSM 43247]
gi|262085617|gb|ACY21585.1| response regulator receiver [Gordonia bronchialis DSM 43247]
Length=212
Score = 227 bits (578), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 124/216 (58%), Positives = 154/216 (72%), Gaps = 4/216 (1%)
Query 1 MSNPQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALL 60
M+NP + VV DDHP FR+G+ R L+LSG V+V+GEA DG AAL+LI+ PDVA++
Sbjct 1 MANP----LVTVVVDDHPFFRDGIARGLTLSGRVSVIGEAGDGRAALDLIREVTPDVAVV 56
Query 61 DYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVK 120
DY+MP M GA VA AV L TRVLL+SA + IV++ALQ+GA+G+L KD+ R IV
Sbjct 57 DYQMPQMTGADVAHAVTRDGLSTRVLLLSAVTDAPIVFEALQRGASGYLSKDADRDTIVG 116
Query 121 AVLDCAKGRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELY 180
AVL AKG VV P L GGL +IR +P LS RE +VL A G+SIP +AAEL+
Sbjct 117 AVLRVAKGDTVVPPELAGGLVDQIRAHTTTGSPALSEREHQVLVGFAQGRSIPQLAAELF 176
Query 181 VAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQRLLD 216
+ STVKTH QRLYEKLGVSDRAAAVAE +R+ L+D
Sbjct 177 IGASTVKTHTQRLYEKLGVSDRAAAVAEGIRRGLID 212
>gi|240172696|ref|ZP_04751355.1| two component LuxR family transcriptional regulator [Mycobacterium
kansasii ATCC 12478]
Length=215
Score = 215 bits (547), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 113/210 (54%), Positives = 150/210 (72%), Gaps = 0/210 (0%)
Query 7 EKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPG 66
++V VVV DDHP+ R+GVVRAL SG V VV + DG AAL+ I+ P VALLDY+MP
Sbjct 6 DRVTVVVADDHPVMRQGVVRALKSSGRVEVVAQVADGRAALDAIRQLRPAVALLDYKMPE 65
Query 67 MDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCA 126
+DG +V A+ LPTRV+L+SA D+ +VY+AL +GA+GFL K+S EIV AV+ CA
Sbjct 66 LDGLEVTHAIARDRLPTRVVLLSAFDDSPVVYKALAEGASGFLTKESDSDEIVNAVVRCA 125
Query 127 KGRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELYVAPSTV 186
+G + + GGLAGE+ +R +L+ RE +V+ +A G S+P IA+ L++A ST+
Sbjct 126 EGASYLPAGIAGGLAGEVTRRGRGATTLLTEREAQVITMMADGLSVPQIASRLHLARSTI 185
Query 187 KTHVQRLYEKLGVSDRAAAVAEAMRQRLLD 216
KTHV LYEKLGVSDR AAVAEAMR+RLL+
Sbjct 186 KTHVHSLYEKLGVSDRGAAVAEAMRRRLLE 215
>gi|284046827|ref|YP_003397167.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
14684]
gi|283951048|gb|ADB53792.1| two component transcriptional regulator, LuxR family [Conexibacter
woesei DSM 14684]
Length=215
Score = 204 bits (519), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 111/216 (52%), Positives = 150/216 (70%), Gaps = 1/216 (0%)
Query 1 MSNPQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALL 60
MS P +VRV+V DDHPLFRE +VR + +VGEA DG AALE I+ PDVA++
Sbjct 1 MSAPT-SRVRVLVADDHPLFREAIVRTIRERPDFELVGEASDGRAALEAIRELQPDVAVI 59
Query 61 DYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVK 120
D +MP +DG QV +AVR EL TR+LL+SA+ + AIV+QA+ GAA +L K++ R +I
Sbjct 60 DVKMPELDGLQVVSAVRRDELGTRILLLSAYLDSAIVFQAVGAGAAAYLSKEADRAQIAD 119
Query 121 AVLDCAKGRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELY 180
A+ A+G V++P G+A E+R R P+L+ RE EVL +A G+ P IA ++
Sbjct 120 AIAAVARGETVLSPEAQAGIAAEVRSRQVEDRPLLTPRELEVLGHVAAGRGAPEIARLIH 179
Query 181 VAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQRLLD 216
++P+TVK H+Q LYEKLGVSDRAAAVAEAMR+ LL+
Sbjct 180 LSPATVKGHLQSLYEKLGVSDRAAAVAEAMRRGLLE 215
>gi|333980083|ref|YP_004518028.1| LuxR family two component transcriptional regulator [Desulfotomaculum
kuznetsovii DSM 6115]
gi|333823564|gb|AEG16227.1| two component transcriptional regulator, LuxR family [Desulfotomaculum
kuznetsovii DSM 6115]
Length=213
Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 76/208 (37%), Positives = 131/208 (63%), Gaps = 2/208 (0%)
Query 9 VRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPGMD 68
++VV+ DDHPL REG+ R LSL+ V + GEA+ G A+EL + DV LLD MPGM+
Sbjct 5 IKVVIADDHPLIREGLRRILSLAPDVVIAGEAESGEQAVELTRRTGADVVLLDVNMPGMN 64
Query 69 GAQVAAAVRSYELP-TRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAK 127
G +++ E+P T+V+ ++ HD+ +++ ++ G +G+LLKD + ++++A+L +
Sbjct 65 GITACKLIKA-EMPDTKVIALTIHDQEEYIFELIRAGVSGYLLKDVSPDKLLEAILGVTR 123
Query 128 GRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELYVAPSTVK 187
G ++P L + E +R +L+ RE E+L +A G+S +IA +L+++ TVK
Sbjct 124 GESFISPRLAAKVFQEFNRRTGKAGNILTNRELEILQLLAQGESNKSIAQKLFISEKTVK 183
Query 188 THVQRLYEKLGVSDRAAAVAEAMRQRLL 215
H+ +++KL VSDR AV A++ +L+
Sbjct 184 NHLTNIFQKLNVSDRTQAVLYAIKNKLV 211
>gi|330470343|ref|YP_004408086.1| two component LuxR family transcriptional regulator [Verrucosispora
maris AB-18-032]
gi|328813314|gb|AEB47486.1| two component transcriptional regulator, LuxR family protein
[Verrucosispora maris AB-18-032]
Length=213
Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/215 (44%), Positives = 133/215 (62%), Gaps = 7/215 (3%)
Query 1 MSNPQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALL 60
M++P VR+++ DDHP+ R+G+ + VVGEA DGA AL L H PDV L+
Sbjct 1 MTDP----VRLLIVDDHPVVRDGLRGMFTGDPGFEVVGEAADGAEALALAARHRPDVVLM 56
Query 61 DYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVK 120
D RMPGMDG + +VL+++ +D A V A++ GA G+LLKD+ R E+V+
Sbjct 57 DLRMPGMDGVTAIGRLVRSGSTAKVLVLTTYDTDADVLPAIEAGATGYLLKDAPRDELVR 116
Query 121 AVLDCAKGRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELY 180
AV A+G V++P++ G L G +R AP LS RE EVL +A G + AA+L+
Sbjct 117 AVRAAARGESVLSPAVAGRLMGRLR---APAEEPLSQRELEVLTLVARGSTNREAAAQLF 173
Query 181 VAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQRLL 215
++ +TVKTH+ +Y KLGV+DRAAAVA A + LL
Sbjct 174 ISEATVKTHLLHVYAKLGVNDRAAAVAVAYDRGLL 208
>gi|170783491|ref|YP_001741984.1| putative DNA binding response regulator [Arthrobacter sp. AK-1]
gi|150034978|gb|ABR66989.1| putative DNA binding response regulator [Arthrobacter sp. AK-1]
Length=212
Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 88/210 (42%), Positives = 130/210 (62%), Gaps = 1/210 (0%)
Query 7 EKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPG 66
+ + V + DDHP++REG+ + + VVG A DG AL I+ PDVA++D +P
Sbjct 2 KTITVFIADDHPVYREGLAQNWESVPQIQVVGTAGDGKNALAAIRELKPDVAVMDLNLPE 61
Query 67 MDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCA 126
+DG QV + + + PT VL+++A+ + V++A GA GFL K ++ +EI AVL
Sbjct 62 LDGMQVLETLFAEDSPTSVLVLTAYMDSTSVFRAFTHGARGFLEKAASFSEITDAVLQIG 121
Query 127 KGRDVVAPSLVGGLAGEIRQRAAPVA-PVLSAREREVLNRIACGQSIPAIAAELYVAPST 185
G ++AP LA E+R R PVLS RE E+L A G S IA+EL+++ +T
Sbjct 122 AGGTIIAPFAQDVLARELRTRQDTAERPVLSPREIEILRLAADGYSGQKIASELHISLAT 181
Query 186 VKTHVQRLYEKLGVSDRAAAVAEAMRQRLL 215
VKTH+Q +Y+KL VSDRA+AVA+A+R+ L
Sbjct 182 VKTHLQHIYDKLDVSDRASAVAQAIRRGFL 211
>gi|326330817|ref|ZP_08197118.1| two-component system response regulator [Nocardioidaceae bacterium
Broad-1]
gi|325951347|gb|EGD43386.1| two-component system response regulator [Nocardioidaceae bacterium
Broad-1]
Length=209
Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 95/213 (45%), Positives = 136/213 (64%), Gaps = 6/213 (2%)
Query 3 NPQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDY 62
NP +++VV DDHP+ R+GVV L L+ VVG+A DG AL L++ PDV +LD
Sbjct 2 NPS---IKIVVADDHPVVRDGVVGVL-LAQGFEVVGQAGDGEEALALVETLHPDVLVLDL 57
Query 63 RMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAV 122
RMPG G +V +R+ E T VL+++ D V A++ GA G+LLKD+ T++V+AV
Sbjct 58 RMPGTSGVEVIERLRAKESRTGVLVLTTFDTDTDVVAAIEAGATGYLLKDAPTTDLVEAV 117
Query 123 LDCAKGRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELYVA 182
A G V++P++ LA +R P A LS REREVL +A G + IAA+L+V+
Sbjct 118 RATAAGETVLSPAVATRLASRLRS-PGPSAQ-LSPREREVLTLVARGTTNRVIAAKLFVS 175
Query 183 PSTVKTHVQRLYEKLGVSDRAAAVAEAMRQRLL 215
+TVKTH+ +++KLGV+DRAAAVA A + +L
Sbjct 176 EATVKTHLGHIFDKLGVTDRAAAVARAYDRGIL 208
>gi|254425578|ref|ZP_05039295.1| response regulator receiver domain protein [Synechococcus sp.
PCC 7335]
gi|196188001|gb|EDX82966.1| response regulator receiver domain protein [Synechococcus sp.
PCC 7335]
Length=209
Score = 155 bits (391), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 84/206 (41%), Positives = 131/206 (64%), Gaps = 6/206 (2%)
Query 7 EKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPG 66
E++RV++ DDHP+ +G+V L + V+G+A DG A+ L + HLPDV L+D R+P
Sbjct 5 EQIRVLLVDDHPILLDGLVMLLECEPDIAVIGQASDGEEAIALFQQHLPDVLLIDLRLPT 64
Query 67 MDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCA 126
+ G +V A++R+ RV+++S +D +YQA+Q GA G+++K ST E++KAV
Sbjct 65 ISGIEVIASIRADYPQVRVVVLSTYDTEEEIYQAVQAGAKGYVIKGSTSDELLKAVRTVY 124
Query 127 KGRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELYVAPSTV 186
+ + + PS+ L +R+ AP LS RE+EVL IA G++ I+AEL +A STV
Sbjct 125 QNQSYIPPSVSEKL---VRRMG---APTLSTREQEVLQLIAEGKTNLQISAELTIAASTV 178
Query 187 KTHVQRLYEKLGVSDRAAAVAEAMRQ 212
+ HV + +KLGVSDR A+ +A+ Q
Sbjct 179 RFHVGHILDKLGVSDRTQAIVQAVNQ 204
>gi|256396087|ref|YP_003117651.1| LuxR family transcriptional regulator [Catenulispora acidiphila
DSM 44928]
gi|256362313|gb|ACU75810.1| two component transcriptional regulator, LuxR family [Catenulispora
acidiphila DSM 44928]
Length=213
Score = 154 bits (390), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 88/209 (43%), Positives = 131/209 (63%), Gaps = 3/209 (1%)
Query 7 EKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPG 66
+ +RVV+ DDH + R GVV L+ ++ +VGEA DG A+EL++ DVALLD RMP
Sbjct 4 DTIRVVLADDHTVMRAGVVALLASEPTITIVGEAGDGREAVELVERLGADVALLDLRMPV 63
Query 67 MDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCA 126
+DG + + + TRVL+++ +D A + +A++ GA G+LLKD+TR ++V+A+ A
Sbjct 64 LDGVAATTEIVAGKTGTRVLILTTYDTDAEIERAVEAGAIGYLLKDTTREQLVEAIRGAA 123
Query 127 KGRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELYVAPSTV 186
+G V+AP + L +RQ P VL+ RE +VLN +A G S I L +A +TV
Sbjct 124 RGETVLAPRIAAKLVARMRQ---PAPVVLTTREVDVLNGVADGLSNADIGKRLVIAEATV 180
Query 187 KTHVQRLYEKLGVSDRAAAVAEAMRQRLL 215
KTH+ R++ KL VSDR AV A+ + LL
Sbjct 181 KTHLLRVFAKLDVSDRTHAVVTALERGLL 209
>gi|297157233|gb|ADI06945.1| two component transcriptional regulator, LuxR family protein
[Streptomyces bingchenggensis BCW-1]
Length=259
Score = 154 bits (390), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 85/198 (43%), Positives = 131/198 (67%), Gaps = 3/198 (1%)
Query 7 EKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPG 66
+++RVVV DDH + R GVV L+ ++ +VGEAD+G A ++L++ +PD+AL+D RMP
Sbjct 11 DRIRVVVVDDHTVMRAGVVALLTAEPTIEIVGEADNGRAGVDLVERLVPDMALVDLRMPV 70
Query 67 MDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCA 126
+DG A + + +PTRVL+++ +D A + +A++ GA G+LLKD+TR ++ A+ A
Sbjct 71 LDGVAATAEIVALPVPTRVLILTTYDTDAEIERAVEAGAVGYLLKDTTRQQLADAIRSAA 130
Query 127 KGRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELYVAPSTV 186
+G V+AP + L +R R PVA L+ARER+VL+ +A G S I L + +TV
Sbjct 131 RGETVLAPKVAERLVARMR-RPEPVA--LTARERDVLHAVADGLSNAEIGRRLVIGEATV 187
Query 187 KTHVQRLYEKLGVSDRAA 204
KTH+ R++ KL VSDRA
Sbjct 188 KTHLLRVFAKLDVSDRAG 205
>gi|291443382|ref|ZP_06582772.1| two-component system [Streptomyces roseosporus NRRL 15998]
gi|291346329|gb|EFE73233.1| two-component system [Streptomyces roseosporus NRRL 15998]
Length=207
Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 87/207 (43%), Positives = 127/207 (62%), Gaps = 2/207 (0%)
Query 9 VRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPGMD 68
+RV++ DDHP+ REG+ L ++VVGEAD G A L LPD+ L+D RMPG
Sbjct 3 IRVLLADDHPVVREGLRGMLDAEADLDVVGEADSGPRAEALCAELLPDIVLMDLRMPGGG 62
Query 69 GAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKG 128
G + +R+ LP RV++++ ++ + + +A++ GA+G+LLKD R E+ A+ A+G
Sbjct 63 GVESIRRIRAAGLPCRVVVLTTYESDSDILRAVEAGASGYLLKDLGRGELADAIRAAARG 122
Query 129 RDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELYVAPSTVKT 188
V+AP++ L R R P P LS RE +VL +A G + I +L++ STVKT
Sbjct 123 ETVLAPTVATRLVD--RLRGVPELPRLSERETQVLRLVAEGCTNAEIGRKLFIGESTVKT 180
Query 189 HVQRLYEKLGVSDRAAAVAEAMRQRLL 215
H+ R++ KLGVSDR AAV AMR LL
Sbjct 181 HLLRIFGKLGVSDRTAAVTGAMRHGLL 207
>gi|239986435|ref|ZP_04707099.1| two component LuxR family transcriptional regulator [Streptomyces
roseosporus NRRL 11379]
Length=206
Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 87/207 (43%), Positives = 127/207 (62%), Gaps = 2/207 (0%)
Query 9 VRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPGMD 68
+RV++ DDHP+ REG+ L ++VVGEAD G A L LPD+ L+D RMPG
Sbjct 2 IRVLLADDHPVVREGLRGMLDAEADLDVVGEADSGPRAEALCAELLPDIVLMDLRMPGGG 61
Query 69 GAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKG 128
G + +R+ LP RV++++ ++ + + +A++ GA+G+LLKD R E+ A+ A+G
Sbjct 62 GVESIRRIRAAGLPCRVVVLTTYESDSDILRAVEAGASGYLLKDLGRGELADAIRAAARG 121
Query 129 RDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELYVAPSTVKT 188
V+AP++ L R R P P LS RE +VL +A G + I +L++ STVKT
Sbjct 122 ETVLAPTVATRLVD--RLRGVPELPRLSERETQVLRLVAEGCTNAEIGRKLFIGESTVKT 179
Query 189 HVQRLYEKLGVSDRAAAVAEAMRQRLL 215
H+ R++ KLGVSDR AAV AMR LL
Sbjct 180 HLLRIFGKLGVSDRTAAVTGAMRHGLL 206
>gi|297158223|gb|ADI07935.1| two component transcriptional regulator, LuxR family protein
[Streptomyces bingchenggensis BCW-1]
Length=212
Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 88/209 (43%), Positives = 130/209 (63%), Gaps = 3/209 (1%)
Query 7 EKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPG 66
E+VRV+V DDH + R GVV L+ + +VGEA DG AALEL++ + PDVAL+D RMP
Sbjct 4 ERVRVIVVDDHTVMRAGVVALLAGEDGIEIVGEAGDGRAALELVERYDPDVALVDLRMPV 63
Query 67 MDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCA 126
+DG A + + TRVL+++ +D + + ++ GA G+LLKD+TR ++ A+ A
Sbjct 64 LDGVGATAEIVARHPRTRVLILTTYDTDQDIERGVEAGAIGYLLKDTTREQLADAIRSAA 123
Query 127 KGRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELYVAPSTV 186
+G V+AP + L +R+ PV L+ARE +VLN +A G + I L + +TV
Sbjct 124 RGETVLAPRVAEKLIARMRR---PVQDPLTARETDVLNAVADGLTNAEIGKRLVITEATV 180
Query 187 KTHVQRLYEKLGVSDRAAAVAEAMRQRLL 215
KTH+ RL+ KL V+DR AV A+ + LL
Sbjct 181 KTHLLRLFAKLDVNDRTRAVVVALERGLL 209
>gi|312199045|ref|YP_004019106.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
gi|311230381|gb|ADP83236.1| two component transcriptional regulator, LuxR family [Frankia
sp. EuI1c]
Length=222
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/208 (43%), Positives = 130/208 (63%), Gaps = 3/208 (1%)
Query 8 KVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPGM 67
++R++V DDHP+ R+G++ + V VVGEA +GA A++L PDV L+D RMPGM
Sbjct 12 RIRLLVVDDHPVVRDGLIGMFAREPDVEVVGEAAEGAQAVQLAARLRPDVILMDLRMPGM 71
Query 68 DGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAK 127
DG + RVL+++ +D + V A++ GA G+LLKD+ R ++++AV A+
Sbjct 72 DGVTAIRELARGGAGARVLVLTTYDTDSHVLPAIEAGATGYLLKDAARDDLLRAVRAAAR 131
Query 128 GRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELYVAPSTVK 187
G V+APS+ L +R P LS RE EVL +A G + +AA+L+V +TVK
Sbjct 132 GEAVLAPSVAATLMNRVRT---PETGPLSQRELEVLQLVAAGATNRVVAAQLFVTEATVK 188
Query 188 THVQRLYEKLGVSDRAAAVAEAMRQRLL 215
TH+ +Y KLGV+DRAAAVAEA + LL
Sbjct 189 THLLNIYAKLGVNDRAAAVAEAFGRGLL 216
>gi|284030392|ref|YP_003380323.1| LuxR family two component transcriptional regulator [Kribbella
flavida DSM 17836]
gi|283809685|gb|ADB31524.1| two component transcriptional regulator, LuxR family [Kribbella
flavida DSM 17836]
Length=217
Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/207 (42%), Positives = 126/207 (61%), Gaps = 0/207 (0%)
Query 9 VRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPGMD 68
VRV+V DDHP+ R G++ L+++ + VVGEA DG A+ L+ + PDV L+D RMP D
Sbjct 5 VRVLVVDDHPVVRSGLIGMLAVTDDIEVVGEAGDGEEAVALVASTRPDVVLMDLRMPRRD 64
Query 69 GAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKG 128
G A+ S T+VL+++ +D + + A++ GAAG+LLKD+ E++ + ++G
Sbjct 65 GVSATGAIVSGHPATKVLVLTTYDTDSDILHAVEAGAAGYLLKDTPHAELLDGIRAASRG 124
Query 129 RDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELYVAPSTVKT 188
V+AP + L +R AAP A S RE EVL +A G S I EL++ +TVKT
Sbjct 125 ETVLAPPVAARLMSRLRTPAAPAAVQPSPRELEVLAAVARGLSNAEIGRELFIGEATVKT 184
Query 189 HVQRLYEKLGVSDRAAAVAEAMRQRLL 215
H+QRL+ KL V DR AV A+ + LL
Sbjct 185 HLQRLFSKLDVDDRTRAVTVAIERGLL 211
>gi|302530526|ref|ZP_07282868.1| two-component system response regulator [Streptomyces sp. AA4]
gi|302439421|gb|EFL11237.1| two-component system response regulator [Streptomyces sp. AA4]
Length=207
Score = 152 bits (383), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 86/207 (42%), Positives = 130/207 (63%), Gaps = 2/207 (0%)
Query 9 VRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPGMD 68
+ +++ DDHP+ REG+ L + VVGEA G A+ L + PDV L+D RMPG+D
Sbjct 2 ITIMLVDDHPVVREGLRGMLEAEDDLTVVGEAGSGDEAVALDRVKQPDVVLMDLRMPGLD 61
Query 69 GAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKG 128
G A+ R+++++ ++ A + +A++ GAAG+LLKD++RTE+ A+ +G
Sbjct 62 GVGAIHAILKETPARRIVVLTTYETDADILRAVEAGAAGYLLKDASRTELAGAIRAAHRG 121
Query 129 RDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELYVAPSTVKT 188
V+APS+ G L +R PV+P LSARE EVL +A G++ I EL++ +TVKT
Sbjct 122 ETVLAPSVAGKLVHRMRN-PEPVSP-LSAREVEVLRLVAKGRTNAEIGRELHIGEATVKT 179
Query 189 HVQRLYEKLGVSDRAAAVAEAMRQRLL 215
H+ R++ KLGVSDR AAV A+ + LL
Sbjct 180 HLLRVFSKLGVSDRTAAVTTALDRHLL 206
>gi|302545305|ref|ZP_07297647.1| two-component system response regulator [Streptomyces hygroscopicus
ATCC 53653]
gi|302462923|gb|EFL26016.1| two-component system response regulator [Streptomyces himastatinicus
ATCC 53653]
Length=209
Score = 152 bits (383), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 87/209 (42%), Positives = 131/209 (63%), Gaps = 4/209 (1%)
Query 7 EKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPG 66
+++RV++ DDHP+ REG+ L + + VVG+A G A+ A PD+ LLD RM G
Sbjct 4 QEIRVLLADDHPVVREGLSAMLESADGITVVGQAGSGEEAVVQAMALRPDIILLDLRMGG 63
Query 67 MDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCA 126
MDG + + +V++++ +++ + + +A++ GAAG+LLK S+R E++ AV A
Sbjct 64 MDGVEATTQILRKAPACKVVIVTTYEDDSDILRAVEAGAAGYLLKGSSRQELIGAVQTAA 123
Query 127 KGRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELYVAPSTV 186
+G V+ PSL G L +R R A +P LS RE EVL + G + I A+L+VA +TV
Sbjct 124 RGETVLTPSLAGKL---LRTRVAEPSP-LSGRECEVLRLVGQGLTNAEIGAKLFVAEATV 179
Query 187 KTHVQRLYEKLGVSDRAAAVAEAMRQRLL 215
KTH+ R ++KLGVSDR AAV AM + LL
Sbjct 180 KTHLLRSFKKLGVSDRTAAVMTAMERGLL 208
>gi|297191947|ref|ZP_06909345.1| two-component system response regulator [Streptomyces pristinaespiralis
ATCC 25486]
gi|197723328|gb|EDY67236.1| two-component system response regulator [Streptomyces pristinaespiralis
ATCC 25486]
Length=218
Score = 151 bits (382), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 90/214 (43%), Positives = 130/214 (61%), Gaps = 1/214 (0%)
Query 3 NPQPEK-VRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLD 61
+P E+ V ++V DDHP+ R+G+ + V+GEA DG A +EL PDV L+D
Sbjct 4 HPAHERPVTLIVVDDHPVVRDGLRGMFESAAGFQVLGEAADGTAGVELATRLDPDVVLMD 63
Query 62 YRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKA 121
RMPG G A + +RVL+++ +D + A++ GA G+LLKD+ R E+ A
Sbjct 64 LRMPGGGGVAAIAELSRRGARSRVLVLTTYDTDSDTLPAIEAGATGYLLKDAPREELFTA 123
Query 122 VLDCAKGRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELYV 181
V A+GR V++P++ L +R AAP + LSAREREVL +A G S AIA EL++
Sbjct 124 VRAAAQGRTVLSPAVASRLVSHVRAPAAPGSEGLSAREREVLELVAKGTSNRAIARELFI 183
Query 182 APSTVKTHVQRLYEKLGVSDRAAAVAEAMRQRLL 215
+ +TVKTH+ ++ KLG DRAAAVA A + +L
Sbjct 184 SEATVKTHLTHVFGKLGAKDRAAAVALAYERGIL 217
>gi|340359188|ref|ZP_08681683.1| two component system response regulator [Actinomyces sp. oral
taxon 448 str. F0400]
gi|339885198|gb|EGQ74936.1| two component system response regulator [Actinomyces sp. oral
taxon 448 str. F0400]
Length=242
Score = 151 bits (382), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 95/218 (44%), Positives = 133/218 (62%), Gaps = 10/218 (4%)
Query 9 VRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPGMD 68
VR++V DDHP+ R G+V LS + VVGEA DGA A+EL +PDV L+D RMP +D
Sbjct 23 VRLLVADDHPVVRSGIVGMLSSEEGLEVVGEAADGAEAVELAAGLVPDVVLMDLRMPVLD 82
Query 69 GAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKG 128
G + A + + RV++++ +D + +A++ GA G+LLKDS R +I++AV A G
Sbjct 83 GVEAARRILALPHAPRVVVLTTYDTDGDILRAVEAGAIGYLLKDSPREDILEAVRAAAAG 142
Query 129 RDVVAPSLVGGLAG---------EIRQRAAPVAPV-LSAREREVLNRIACGQSIPAIAAE 178
R ++PS+ L G + A+ APV LS REREVL ++ G S I E
Sbjct 143 RSALSPSVTTRLVGAARGTGGSAGSGRGASAGAPVTLSPREREVLIAVSRGLSNSRIGRE 202
Query 179 LYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQRLLD 216
LY+ +TVKTH+ R+ KLGV R AAV EA+R+ LLD
Sbjct 203 LYITEATVKTHLLRINNKLGVDSRTAAVTEALRRGLLD 240
>gi|345015257|ref|YP_004817611.1| LuxR family two component transcriptional regulator [Streptomyces
violaceusniger Tu 4113]
gi|344041606|gb|AEM87331.1| two component transcriptional regulator, LuxR family [Streptomyces
violaceusniger Tu 4113]
Length=215
Score = 151 bits (382), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 86/207 (42%), Positives = 126/207 (61%), Gaps = 4/207 (1%)
Query 9 VRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPGMD 68
+RV++ DDHP+ REG+ L + + VVG+A G A+ A PD+ LLD RM GMD
Sbjct 12 IRVLLADDHPVVREGLSAMLESAEGITVVGQAGSGEEAVVQAVALRPDITLLDLRMGGMD 71
Query 69 GAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKG 128
G + + +V++++ +++ + + +A++ GAAG+LLK S+R E++ AV A+G
Sbjct 72 GVEATGQILRQVPGCKVVIVTTYEDDSDILRAVEAGAAGYLLKGSSRQELIDAVQTAARG 131
Query 129 RDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELYVAPSTVKT 188
V+ PSL G L R R +P LS REREVL + G + I EL+V+ +TVKT
Sbjct 132 ETVLTPSLAGKL---FRSRTVEPSP-LSGREREVLRLVGRGLTNSEIGTELFVSEATVKT 187
Query 189 HVQRLYEKLGVSDRAAAVAEAMRQRLL 215
H+ R Y KLGVSDR AAV +AM + L
Sbjct 188 HLLRSYRKLGVSDRTAAVMKAMERGFL 214
>gi|88856002|ref|ZP_01130664.1| two-component response regulator [marine actinobacterium PHSC20C1]
gi|88814869|gb|EAR24729.1| two-component response regulator [marine actinobacterium PHSC20C1]
Length=209
Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 88/207 (43%), Positives = 128/207 (62%), Gaps = 3/207 (1%)
Query 9 VRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPGMD 68
+RVVV DDHP+ R G+V LS + ++VVGEA DGA A+ + PDV L+D RMPG+D
Sbjct 2 IRVVVADDHPVVRSGIVGLLSSADDIDVVGEAGDGAEAVAIATRLSPDVVLMDLRMPGVD 61
Query 69 GAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKG 128
GAQ A + + RVL+++ ++ + A++ GA+G+LLK + + EI+ + A+G
Sbjct 62 GAQATAQIVAARPDVRVLILTTYESDENILTAIEAGASGYLLKAAPQDEILAGLRSVARG 121
Query 129 RDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELYVAPSTVKT 188
+APS+ L +R+ P LS RE +VL +A G S AIAA L+V+ +TVKT
Sbjct 122 EVALAPSIAALLVKRMRE---PARVALSERETQVLALVAEGNSNRAIAAALFVSEATVKT 178
Query 189 HVQRLYEKLGVSDRAAAVAEAMRQRLL 215
H+ ++EKL V DR AV +AM LL
Sbjct 179 HLIHVFEKLDVKDRTRAVTKAMELGLL 205
>gi|297559326|ref|YP_003678300.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
gi|296843774|gb|ADH65794.1| two component transcriptional regulator, LuxR family [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
Length=210
Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 86/207 (42%), Positives = 129/207 (63%), Gaps = 1/207 (0%)
Query 9 VRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPGMD 68
+RV++ DDHP+ REG+ L+ + VVGEA G A+ PDV L+D RMPG D
Sbjct 2 IRVLLVDDHPVVREGIRGMLAAEADLTVVGEAASGPEAVVRTAELEPDVVLMDLRMPGGD 61
Query 69 GAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKG 128
G + + + VL+++ +D A + +A++ GA G+LLKD+ R E+ +AV A+G
Sbjct 62 GVEATGRISAERPGAHVLVLTTYDTDADILRAVEAGATGYLLKDTPRAELAEAVRAAARG 121
Query 129 RDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELYVAPSTVKT 188
V+ L G L +R+R P A VLS RE EVL + G++ AI L+++P+TVKT
Sbjct 122 ETVLTGRLAGRLFTGMRRRGEPAA-VLSPREVEVLRLASEGRTNAAIGRALHISPTTVKT 180
Query 189 HVQRLYEKLGVSDRAAAVAEAMRQRLL 215
H+ R+Y+KLGV DR +AV++A+R+ LL
Sbjct 181 HLMRVYDKLGVGDRTSAVSQAIRRGLL 207
>gi|256396450|ref|YP_003118014.1| LuxR family transcriptional regulator [Catenulispora acidiphila
DSM 44928]
gi|256362676|gb|ACU76173.1| two component transcriptional regulator, LuxR family [Catenulispora
acidiphila DSM 44928]
Length=211
Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 88/213 (42%), Positives = 132/213 (62%), Gaps = 3/213 (1%)
Query 3 NPQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDY 62
+ Q +RV++ DDHP+ R G+ L+ ++VV EA DGA A+ L +PDV L+D
Sbjct 2 SEQAGNLRVLIVDDHPVVRAGLTGMLAAEPDLDVVAEAADGAEAVRLALELVPDVVLMDL 61
Query 63 RMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAV 122
RM G+DG + A + + RVL+++ +D A + +A++ GA G+LLKD+ R ++ +AV
Sbjct 62 RMAGVDGVEATARLAAAAPAIRVLILTTYDTDADIVRAVEAGATGYLLKDTPRADLAEAV 121
Query 123 LDCAKGRDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELYVA 182
A+G V+AP++ L +RQ P A L+ REREVL +A G + I EL+++
Sbjct 122 RLAARGETVLAPAVAAKLVSRLRQ---PAAQPLTPREREVLALVARGLANAEIGRELFIS 178
Query 183 PSTVKTHVQRLYEKLGVSDRAAAVAEAMRQRLL 215
+TVKTH+ R + KLGV DR AAV +AM Q LL
Sbjct 179 EATVKTHLVRAFGKLGVDDRTAAVTKAMAQGLL 211
>gi|345010663|ref|YP_004813017.1| LuxR family two component transcriptional regulator [Streptomyces
violaceusniger Tu 4113]
gi|344037012|gb|AEM82737.1| two component transcriptional regulator, LuxR family [Streptomyces
violaceusniger Tu 4113]
Length=206
Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/207 (43%), Positives = 124/207 (60%), Gaps = 2/207 (0%)
Query 9 VRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPGMD 68
+R+++ DDHP+ REG+ L + VVGEAD G A L + PDV L+D RMP
Sbjct 2 IRILIADDHPVVREGLRGMLGAEPDLTVVGEADSGPRAEALCVSLRPDVVLMDLRMPDGG 61
Query 69 GAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKG 128
G + A + + LP+RV++++ ++ + +A++ GAAG+LLKD R E+ +AV A+G
Sbjct 62 GVESIARMTAAGLPSRVIVLTTYETDGDILRAVEAGAAGYLLKDMARAELAEAVRSAARG 121
Query 129 RDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELYVAPSTVKT 188
V+APS+ L ++R R P P LS RE VL +A G + I L++ STVKT
Sbjct 122 ETVLAPSVAARLMDQLRDR--PERPRLSERETAVLRLVAQGCTNAEIGRRLFIGESTVKT 179
Query 189 HVQRLYEKLGVSDRAAAVAEAMRQRLL 215
H+ R + KLGV DR AAV AMR LL
Sbjct 180 HLLRAFGKLGVDDRTAAVTSAMRLGLL 206
>gi|271961856|ref|YP_003336052.1| response regulator receiver protein [Streptosporangium roseum
DSM 43021]
gi|270505031|gb|ACZ83309.1| response regulator receiver protein [Streptosporangium roseum
DSM 43021]
Length=214
Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/208 (44%), Positives = 133/208 (64%), Gaps = 4/208 (1%)
Query 9 VRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPGMD 68
+R+++ DDHP+ R+G+ + V+ EA DGA A+EL +A PDV L+D RMP MD
Sbjct 6 IRLLIADDHPIVRDGIRGMFAGDPGFEVLAEAGDGAQAVELARALNPDVILMDLRMPKMD 65
Query 69 GAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKG 128
G + + RVL+++ +D V A++ GA G+LLKD+ R ++++AV A+G
Sbjct 66 GVMAIKELARLGVAARVLVLTTYDTDKDVLPAVEAGATGYLLKDTQRDDLIRAVRTAARG 125
Query 129 RDVVAPSLVGGLAGEIRQRAAPVAPVLSAREREVLNRIACGQSIPAIAAELYVAPSTVKT 188
V++PS+ L G++R AP P LSARE EVL IA G + +AA L+++ +TVK+
Sbjct 126 EAVLSPSVATRLLGQVR---APADP-LSARELEVLELIAQGTTNREVAARLFISEATVKS 181
Query 189 HVQRLYEKLGVSDRAAAVAEAMRQRLLD 216
H+ +Y KLGV+DRAAAVA A R+ LLD
Sbjct 182 HLLHIYTKLGVNDRAAAVAVAFRRGLLD 209
Lambda K H
0.318 0.133 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 260686263632
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40