BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0847
Length=130
Score E
Sequences producing significant alignments: (Bits) Value
gi|15840262|ref|NP_335299.1| hypothetical protein MT0870 [Mycoba... 255 2e-66
gi|15607987|ref|NP_215362.1| lipoprotein LpqS [Mycobacterium tub... 253 5e-66
gi|308370515|ref|ZP_07421837.2| lipoprotein lpqS [Mycobacterium ... 253 6e-66
gi|294996328|ref|ZP_06802019.1| lipoprotein lpqS [Mycobacterium ... 253 7e-66
gi|31792035|ref|NP_854528.1| lipoprotein LpqS [Mycobacterium bov... 252 1e-65
gi|289756933|ref|ZP_06516311.1| lipoprotein lpqS [Mycobacterium ... 210 7e-53
gi|167967567|ref|ZP_02549844.1| lipoprotein lpqS [Mycobacterium ... 171 4e-41
gi|183984737|ref|YP_001853028.1| lipoprotein LpqS [Mycobacterium... 140 9e-32
gi|118616203|ref|YP_904535.1| lipoprotein LpqS [Mycobacterium ul... 137 5e-31
gi|240170781|ref|ZP_04749440.1| lipoprotein LpqS [Mycobacterium ... 112 1e-23
gi|240168858|ref|ZP_04747517.1| hypothetical protein MkanA1_0607... 77.8 5e-13
gi|296165817|ref|ZP_06848317.1| LpqS family protein [Mycobacteri... 71.2 5e-11
gi|145221492|ref|YP_001132170.1| hypothetical protein Mflv_0898 ... 67.8 5e-10
gi|120406799|ref|YP_956628.1| hypothetical protein Mvan_5857 [My... 61.2 5e-08
gi|315441573|ref|YP_004074450.1| hypothetical protein Mspyr1_545... 59.7 2e-07
gi|315446727|ref|YP_004079606.1| hypothetical protein Mspyr1_524... 55.8 2e-06
gi|126437128|ref|YP_001072819.1| hypothetical protein Mjls_4561 ... 55.1 3e-06
gi|119870292|ref|YP_940244.1| hypothetical protein Mkms_4262 [My... 48.5 3e-04
gi|108801160|ref|YP_641357.1| hypothetical protein Mmcs_4196 [My... 48.5 3e-04
gi|126436994|ref|YP_001072685.1| hypothetical protein Mjls_4423 ... 47.0 0.001
gi|296165805|ref|ZP_06848309.1| LpqS family protein [Mycobacteri... 46.6 0.001
gi|296165758|ref|ZP_06848272.1| conserved hypothetical protein [... 40.0 0.10
gi|296170372|ref|ZP_06851962.1| conserved hypothetical protein [... 40.0 0.12
gi|169628365|ref|YP_001702014.1| hypothetical protein MAB_1272 [... 35.4 2.6
gi|108798414|ref|YP_638611.1| hypothetical protein Mmcs_1443 [My... 33.9 7.4
>gi|15840262|ref|NP_335299.1| hypothetical protein MT0870 [Mycobacterium tuberculosis CDC1551]
gi|148822055|ref|YP_001286809.1| lipoprotein lpqS [Mycobacterium tuberculosis F11]
gi|253800131|ref|YP_003033132.1| lipoprotein lpqS [Mycobacterium tuberculosis KZN 1435]
33 more sequence titles
Length=138
Score = 255 bits (651), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 130/130 (100%), Positives = 130/130 (100%), Gaps = 0/130 (0%)
Query 1 VVWMRSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDN 60
VVWMRSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDN
Sbjct 9 VVWMRSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDN 68
Query 61 SMPPCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAARGPPAAQGSVRTGQD 120
SMPPCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAARGPPAAQGSVRTGQD
Sbjct 69 SMPPCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAARGPPAAQGSVRTGQD 128
Query 121 LLTRFCLARR 130
LLTRFCLARR
Sbjct 129 LLTRFCLARR 138
>gi|15607987|ref|NP_215362.1| lipoprotein LpqS [Mycobacterium tuberculosis H37Rv]
gi|148660624|ref|YP_001282147.1| putative lipoprotein LpqS [Mycobacterium tuberculosis H37Ra]
gi|254549823|ref|ZP_05140270.1| lipoprotein lpqS [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
25 more sequence titles
Length=130
Score = 253 bits (647), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 129/130 (99%), Positives = 130/130 (100%), Gaps = 0/130 (0%)
Query 1 VVWMRSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDN 60
+VWMRSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDN
Sbjct 1 MVWMRSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDN 60
Query 61 SMPPCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAARGPPAAQGSVRTGQD 120
SMPPCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAARGPPAAQGSVRTGQD
Sbjct 61 SMPPCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAARGPPAAQGSVRTGQD 120
Query 121 LLTRFCLARR 130
LLTRFCLARR
Sbjct 121 LLTRFCLARR 130
>gi|308370515|ref|ZP_07421837.2| lipoprotein lpqS [Mycobacterium tuberculosis SUMu003]
gi|308331678|gb|EFP20529.1| lipoprotein lpqS [Mycobacterium tuberculosis SUMu003]
Length=138
Score = 253 bits (647), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 129/130 (99%), Positives = 129/130 (99%), Gaps = 0/130 (0%)
Query 1 VVWMRSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDN 60
VVWMRSAIVAVALGVTVAAVAA CWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDN
Sbjct 9 VVWMRSAIVAVALGVTVAAVAAVCWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDN 68
Query 61 SMPPCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAARGPPAAQGSVRTGQD 120
SMPPCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAARGPPAAQGSVRTGQD
Sbjct 69 SMPPCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAARGPPAAQGSVRTGQD 128
Query 121 LLTRFCLARR 130
LLTRFCLARR
Sbjct 129 LLTRFCLARR 138
>gi|294996328|ref|ZP_06802019.1| lipoprotein lpqS [Mycobacterium tuberculosis 210]
Length=150
Score = 253 bits (646), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 129/129 (100%), Positives = 129/129 (100%), Gaps = 0/129 (0%)
Query 1 VVWMRSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDN 60
VVWMRSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDN
Sbjct 6 VVWMRSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDN 65
Query 61 SMPPCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAARGPPAAQGSVRTGQD 120
SMPPCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAARGPPAAQGSVRTGQD
Sbjct 66 SMPPCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAARGPPAAQGSVRTGQD 125
Query 121 LLTRFCLAR 129
LLTRFCLAR
Sbjct 126 LLTRFCLAR 134
>gi|31792035|ref|NP_854528.1| lipoprotein LpqS [Mycobacterium bovis AF2122/97]
gi|121636770|ref|YP_976993.1| putative lipoprotein lpqS [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|224989241|ref|YP_002643928.1| putative lipoprotein [Mycobacterium bovis BCG str. Tokyo 172]
8 more sequence titles
Length=130
Score = 252 bits (644), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 128/130 (99%), Positives = 129/130 (99%), Gaps = 0/130 (0%)
Query 1 VVWMRSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDN 60
+VWMRSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDN
Sbjct 1 MVWMRSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDN 60
Query 61 SMPPCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAARGPPAAQGSVRTGQD 120
SMPPCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAARGPPAAQGSVRTGQD
Sbjct 61 SMPPCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAARGPPAAQGSVRTGQD 120
Query 121 LLTRFCLARR 130
LLTRFCL RR
Sbjct 121 LLTRFCLVRR 130
>gi|289756933|ref|ZP_06516311.1| lipoprotein lpqS [Mycobacterium tuberculosis T85]
gi|289712497|gb|EFD76509.1| lipoprotein lpqS [Mycobacterium tuberculosis T85]
Length=116
Score = 210 bits (534), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 108/108 (100%), Positives = 108/108 (100%), Gaps = 0/108 (0%)
Query 1 VVWMRSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDN 60
VVWMRSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDN
Sbjct 9 VVWMRSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDN 68
Query 61 SMPPCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAARGP 108
SMPPCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAARGP
Sbjct 69 SMPPCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAARGP 116
>gi|167967567|ref|ZP_02549844.1| lipoprotein lpqS [Mycobacterium tuberculosis H37Ra]
Length=150
Score = 171 bits (432), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 84/85 (99%), Positives = 85/85 (100%), Gaps = 0/85 (0%)
Query 1 VVWMRSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDN 60
VVWMRSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDN
Sbjct 6 VVWMRSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDN 65
Query 61 SMPPCPERLATAVLPRSATPVLLPD 85
SMPPCPERLATAVLPRSATPVLLP+
Sbjct 66 SMPPCPERLATAVLPRSATPVLLPE 90
>gi|183984737|ref|YP_001853028.1| lipoprotein LpqS [Mycobacterium marinum M]
gi|183178063|gb|ACC43173.1| lipoprotein LpqS [Mycobacterium marinum M]
Length=138
Score = 140 bits (352), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 83/130 (64%), Positives = 93/130 (72%), Gaps = 0/130 (0%)
Query 1 VVWMRSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDN 60
VVW RSAIVA+AL A VAA CWLPQ+H AH +HPL TSVGSEFV++ DH HLVDN
Sbjct 9 VVWTRSAIVALALAWAAAVVAAQCWLPQVHLQPAHSDHPLATSVGSEFVLSADHAHLVDN 68
Query 61 SMPPCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAARGPPAAQGSVRTGQD 120
S PPCPE+ ATAVLPR+AT VAAA G+ LT V PA RGPP+ VR GQD
Sbjct 69 STPPCPEQFATAVLPRTATMSFESAPVAAAAGIPGILTYLVVPAGRGPPSVPVYVRAGQD 128
Query 121 LLTRFCLARR 130
LLTR+C ARR
Sbjct 129 LLTRYCRARR 138
>gi|118616203|ref|YP_904535.1| lipoprotein LpqS [Mycobacterium ulcerans Agy99]
gi|118568313|gb|ABL03064.1| lipoprotein LpqS [Mycobacterium ulcerans Agy99]
Length=138
Score = 137 bits (345), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 82/130 (64%), Positives = 92/130 (71%), Gaps = 0/130 (0%)
Query 1 VVWMRSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDN 60
VVW RSAIVA+AL A VAA CWLPQ+H AH +HPL TSVGSEFV++ DH HLVDN
Sbjct 9 VVWTRSAIVALALAWAAAVVAAQCWLPQVHLQPAHSDHPLATSVGSEFVLSADHAHLVDN 68
Query 61 SMPPCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAARGPPAAQGSVRTGQD 120
S PPCPE+ ATAVL R+AT VAAA G+ LT V PA RGPP+ VR GQD
Sbjct 69 STPPCPEQFATAVLSRTATMSFESAPVAAAAGIPGILTYLVVPAGRGPPSVPVYVRAGQD 128
Query 121 LLTRFCLARR 130
LLTR+C ARR
Sbjct 129 LLTRYCRARR 138
>gi|240170781|ref|ZP_04749440.1| lipoprotein LpqS [Mycobacterium kansasii ATCC 12478]
Length=138
Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/128 (58%), Positives = 85/128 (67%), Gaps = 0/128 (0%)
Query 2 VWMRSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDNS 61
VW RSA +A+ L V VAAVAA CWLPQL R AHP+HPL+T++GSEF +N H HL D+S
Sbjct 10 VWTRSARIAIVLVVVVAAVAAQCWLPQLDRQPAHPSHPLSTAMGSEFAVNIGHAHLTDDS 69
Query 62 MPPCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAARGPPAAQGSVRTGQDL 121
PCP A AV+PR TP VV A G+ + T V A RGPP VRTGQDL
Sbjct 70 ASPCPPLQAGAVMPRPDTPAFEAAVVVVAGGIASMPTAAVVVAGRGPPTLPVDVRTGQDL 129
Query 122 LTRFCLAR 129
LTRFCL+R
Sbjct 130 LTRFCLSR 137
>gi|240168858|ref|ZP_04747517.1| hypothetical protein MkanA1_06075 [Mycobacterium kansasii ATCC
12478]
Length=169
Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/111 (42%), Positives = 58/111 (53%), Gaps = 0/111 (0%)
Query 20 VAAACWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDNSMPPCPERLATAVLPRSAT 79
V C LP+ AHP+ + + VIN H D + CP +LATAVLP+S T
Sbjct 59 VGGHCGLPRWEFSPAHPSQSRLATPTDQLVINGKHAQRSDAAASLCPGKLATAVLPQSVT 118
Query 80 PVLLPDVVAAAPGMTAALTDPVAPAARGPPAAQGSVRTGQDLLTRFCLARR 130
P L + A G+ L DPVA R PPA V +G+ LLTR C+ARR
Sbjct 119 PALGVVAMLAVAGLVGLLVDPVAFGGRSPPATPHCVTSGRVLLTRLCVARR 169
>gi|296165817|ref|ZP_06848317.1| LpqS family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295898830|gb|EFG78336.1| LpqS family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=139
Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/131 (39%), Positives = 64/131 (49%), Gaps = 19/131 (14%)
Query 17 VAAVAAACWLPQL-------------HRHVAHPNHPLTTSVGSEFVINTDHGHLVDNSMP 63
V AV AA WL V+HP H L S+G EF ++ DH H+ S
Sbjct 11 VVAVGAAAWLAMWGVLIGAHSIMGHSQSSVSHPAHALVASLGGEFTVDVDHPHVGKGSSG 70
Query 64 PCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVA----PAARGPPAAQGSVRTGQ 119
E+ TAVLPRS ++ ++A A+T A PA RGPP A TGQ
Sbjct 71 GHHEQFTTAVLPRSGA--VVAALIALGVVAAVAVTAGSAWFGLPAGRGPPRAPAFSVTGQ 128
Query 120 DLLTRFCLARR 130
D+LTRFCL+RR
Sbjct 129 DVLTRFCLSRR 139
>gi|145221492|ref|YP_001132170.1| hypothetical protein Mflv_0898 [Mycobacterium gilvum PYR-GCK]
gi|145213978|gb|ABP43382.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
Length=136
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/127 (38%), Positives = 68/127 (54%), Gaps = 3/127 (2%)
Query 5 RSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDNSMPP 64
R A+VA L + VAA LP + AH HPL ++VG+ + DH H+ + P
Sbjct 12 RRAVVAAMLAFWIVIVAAEWALPGIEAAPAHGPHPLASAVGAPVAVQLDHPHISQGGIAP 71
Query 65 CPERLATAVLPRSATPVLLPDVVAAAPGMTAAL-TDPVAPAARGPPAAQGSVRTGQDLLT 123
PE A AVLPR ++ +V+A + A P+ P RGPP + + +TG+D+L
Sbjct 72 SPESFAEAVLPRGTVTLIALALVSALAVLPALWRYAPLTP-IRGPPRSPVA-QTGRDVLV 129
Query 124 RFCLARR 130
R C+ARR
Sbjct 130 RLCIARR 136
>gi|120406799|ref|YP_956628.1| hypothetical protein Mvan_5857 [Mycobacterium vanbaalenii PYR-1]
gi|119959617|gb|ABM16622.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=138
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/126 (34%), Positives = 59/126 (47%), Gaps = 1/126 (0%)
Query 5 RSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTS-VGSEFVINTDHGHLVDNSMP 63
R A+ A + V A LP + AH HPL S +G+ + DH H+ + P
Sbjct 12 RRAVAAALIAFWTVVVGAEWALPGIESAHAHGPHPLAASAIGAHSAVADDHPHVSKGASP 71
Query 64 PCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAARGPPAAQGSVRTGQDLLT 123
P+ LA AVLPR ++ ++AA + A RGPP + TG+DLL
Sbjct 72 LAPDTLAEAVLPRGTVSLIALGLMAALAVLPLVWHQAALAAIRGPPRRSSTTLTGRDLLA 131
Query 124 RFCLAR 129
R C+AR
Sbjct 132 RLCIAR 137
>gi|315441573|ref|YP_004074450.1| hypothetical protein Mspyr1_54560 [Mycobacterium sp. Spyr1]
gi|315265228|gb|ADU01969.1| hypothetical protein Mspyr1_54560 [Mycobacterium sp. Spyr1]
Length=148
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/96 (38%), Positives = 49/96 (52%), Gaps = 0/96 (0%)
Query 35 HPNHPLTTSVGSEFVINTDHGHLVDNSMPPCPERLATAVLPRSATPVLLPDVVAAAPGMT 94
H H +TT+V EF + DH H S P+ ATAV+PR AT ++ + A
Sbjct 53 HGPHAVTTAVSHEFAVVMDHPHFQHASAAISPDTFATAVVPRVATVLVALGLAVAVAAAW 112
Query 95 AALTDPVAPAARGPPAAQGSVRTGQDLLTRFCLARR 130
+ A RGPP G V +G+ LL RFC++RR
Sbjct 113 LYRGHGIWAAVRGPPRGLGPVVSGRQLLARFCISRR 148
>gi|315446727|ref|YP_004079606.1| hypothetical protein Mspyr1_52460 [Mycobacterium sp. Spyr1]
gi|315265030|gb|ADU01772.1| hypothetical protein Mspyr1_52460 [Mycobacterium sp. Spyr1]
Length=136
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/96 (36%), Positives = 47/96 (49%), Gaps = 0/96 (0%)
Query 35 HPNHPLTTSVGSEFVINTDHGHLVDNSMPPCPERLATAVLPRSATPVLLPDVVAAAPGMT 94
H H L++ V +F +H H D S P P+ A A LPR+ T ++ +VA
Sbjct 41 HGPHALSSGVFVDFAAIVEHPHAQDGSAPMAPDAFAEAALPRTVTLLVAFGLVAIIGAAF 100
Query 95 AALTDPVAPAARGPPAAQGSVRTGQDLLTRFCLARR 130
+ + + RGPP G V GQ LL R C+ARR
Sbjct 101 SWRSTGASVVIRGPPRWGGYVIAGQHLLLRLCIARR 136
>gi|126437128|ref|YP_001072819.1| hypothetical protein Mjls_4561 [Mycobacterium sp. JLS]
gi|126236928|gb|ABO00329.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=138
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/127 (32%), Positives = 56/127 (45%), Gaps = 1/127 (0%)
Query 5 RSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTS-VGSEFVINTDHGHLVDNSMP 63
R AIVA + V A LP ++ H H L TS VG+ + DH HL
Sbjct 12 RRAIVAALIAFWTVIVGAEWALPGVNAAPTHGPHTLATSAVGAPMSVELDHPHLSQPDAE 71
Query 64 PCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAARGPPAAQGSVRTGQDLLT 123
P+ LA A+LPR ++ + + RGPP ++RTG+D+L
Sbjct 72 CTPDTLAEAILPRGTVSLIALALGLVVVVLPLLWCQAAKAPIRGPPRNARALRTGRDVLA 131
Query 124 RFCLARR 130
C+ARR
Sbjct 132 HLCIARR 138
>gi|119870292|ref|YP_940244.1| hypothetical protein Mkms_4262 [Mycobacterium sp. KMS]
gi|119696381|gb|ABL93454.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=191
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/101 (39%), Positives = 49/101 (49%), Gaps = 4/101 (3%)
Query 32 HVAHPNHPLTTSVGSEFVINTDHGHLVDNSMPPCPERLATAVLPRSATPVLLPDVVAAAP 91
H H H L + TDH H + S+P P+ A AV PR+ V L + A
Sbjct 93 HPHHGPHALAAGPHGDPAAMTDHAHFENGSIPVSPDTYADAVRPRAT--VALMALGLLAA 150
Query 92 GMTAALTDPVAPAA--RGPPAAQGSVRTGQDLLTRFCLARR 130
+ A+ AP A RGPP G V TG+ LLTR C+ARR
Sbjct 151 MVAVAVFYRGAPLALIRGPPRGLGEVLTGRVLLTRLCIARR 191
>gi|108801160|ref|YP_641357.1| hypothetical protein Mmcs_4196 [Mycobacterium sp. MCS]
gi|108771579|gb|ABG10301.1| hypothetical protein Mmcs_4196 [Mycobacterium sp. MCS]
Length=182
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/101 (39%), Positives = 49/101 (49%), Gaps = 4/101 (3%)
Query 32 HVAHPNHPLTTSVGSEFVINTDHGHLVDNSMPPCPERLATAVLPRSATPVLLPDVVAAAP 91
H H H L + TDH H + S+P P+ A AV PR+ V L + A
Sbjct 84 HPHHGPHALAAGPHGDPAAMTDHAHFENGSIPVSPDTYADAVRPRAT--VALMALGLLAA 141
Query 92 GMTAALTDPVAPAA--RGPPAAQGSVRTGQDLLTRFCLARR 130
+ A+ AP A RGPP G V TG+ LLTR C+ARR
Sbjct 142 MVAVAVFYRGAPLALIRGPPRGLGEVLTGRVLLTRLCIARR 182
>gi|126436994|ref|YP_001072685.1| hypothetical protein Mjls_4423 [Mycobacterium sp. JLS]
gi|126236794|gb|ABO00195.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=191
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/99 (36%), Positives = 46/99 (47%), Gaps = 0/99 (0%)
Query 32 HVAHPNHPLTTSVGSEFVINTDHGHLVDNSMPPCPERLATAVLPRSATPVLLPDVVAAAP 91
H H H L + TDH H + S+P P+ A AV PR+ +L ++AA
Sbjct 93 HPHHGPHALAAGPHGDPAAMTDHAHFENGSIPVSPDTYADAVRPRATVALLALGLLAAMV 152
Query 92 GMTAALTDPVAPAARGPPAAQGSVRTGQDLLTRFCLARR 130
+ RGPP G V TG+ LLTR C+ARR
Sbjct 153 AVAVFYRGAPLALIRGPPRGLGEVLTGRVLLTRLCIARR 191
>gi|296165805|ref|ZP_06848309.1| LpqS family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295898842|gb|EFG78344.1| LpqS family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=125
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/83 (41%), Positives = 39/83 (47%), Gaps = 2/83 (2%)
Query 50 INTDHGHLVDNSMPPCPERLATAVLPRSATPV--LLPDVVAAAPGMTAALTDPVAPAARG 107
DH PE+ AVLPRS PV L+ AA + L PA RG
Sbjct 43 FGVDHPRATKGFASEHPEQSTAAVLPRSGAPVTTLIALGAVAAVAVAGGLACFGLPAGRG 102
Query 108 PPAAQGSVRTGQDLLTRFCLARR 130
PP TGQD+LTRFCL+RR
Sbjct 103 PPHTPAFSVTGQDVLTRFCLSRR 125
>gi|296165758|ref|ZP_06848272.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295898883|gb|EFG78375.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=117
Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/84 (33%), Positives = 38/84 (46%), Gaps = 0/84 (0%)
Query 47 EFVINTDHGHLVDNSMPPCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAAR 106
++ I DH H +S ++ TA S + + G L P + + R
Sbjct 34 KYQIPPDHAHAERDSSTHHDDQCMTAAFTPSVAALATFGAAVSPVGGAGWLARPASVSGR 93
Query 107 GPPAAQGSVRTGQDLLTRFCLARR 130
GPPAA G G+ LLTR CL+RR
Sbjct 94 GPPAALGMRCAGRHLLTRLCLSRR 117
>gi|296170372|ref|ZP_06851962.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295894965|gb|EFG74685.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=138
Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/46 (48%), Positives = 29/46 (64%), Gaps = 1/46 (2%)
Query 85 DVVAAAPGMTAALTDPVAPAARGPPAAQG-SVRTGQDLLTRFCLAR 129
D+V AA + +L PV A R PP G + R G++LLTRFC+AR
Sbjct 92 DIVVAAIALAGSLAGPVLRAPRAPPRTAGFAFRWGRNLLTRFCIAR 137
>gi|169628365|ref|YP_001702014.1| hypothetical protein MAB_1272 [Mycobacterium abscessus ATCC 19977]
gi|169240332|emb|CAM61360.1| Hypothetical protein MAB_1272 [Mycobacterium abscessus]
Length=139
Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/84 (35%), Positives = 38/84 (46%), Gaps = 5/84 (5%)
Query 51 NTDHGHLVDNSMP--PCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAARGP 108
+ H HL DNS+ C L R P+ + V+AA T A +RGP
Sbjct 57 SASHAHL-DNSIHQLSCQTLDGMVGLTRGLNPLRVLIVLAALVLATVVFQPVAAHLSRGP 115
Query 109 PAAQG--SVRTGQDLLTRFCLARR 130
P G RTG+D+LT C+ RR
Sbjct 116 PLPAGCYEARTGRDILTHLCVIRR 139
>gi|108798414|ref|YP_638611.1| hypothetical protein Mmcs_1443 [Mycobacterium sp. MCS]
gi|119867511|ref|YP_937463.1| hypothetical protein Mkms_1461 [Mycobacterium sp. KMS]
gi|108768833|gb|ABG07555.1| hypothetical protein Mmcs_1443 [Mycobacterium sp. MCS]
gi|119693600|gb|ABL90673.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=195
Score = 33.9 bits (76), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 35/127 (28%), Positives = 49/127 (39%), Gaps = 1/127 (0%)
Query 5 RSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTSV-GSEFVINTDHGHLVDNSMP 63
R A+V L + V A LP H H L S G+ DH H +
Sbjct 69 RRALVGALLAFWIVIVGAEWALPGTEPPTVHAPHTLAASAPGAPVSAEFDHPHASTSDGA 128
Query 64 PCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAARGPPAAQGSVRTGQDLLT 123
+ L + PR A ++ + AA D RGPP ++G+D+L
Sbjct 129 CYLDLLMDVIAPRGAFMLIALALAAAVTVAPTRWRDGGVGPIRGPPRIPVWHQSGRDMLV 188
Query 124 RFCLARR 130
R C+ARR
Sbjct 189 RLCIARR 195
Lambda K H
0.322 0.132 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 127765705240
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40