BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0847

Length=130
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15840262|ref|NP_335299.1|  hypothetical protein MT0870 [Mycoba...   255    2e-66
gi|15607987|ref|NP_215362.1|  lipoprotein LpqS [Mycobacterium tub...   253    5e-66
gi|308370515|ref|ZP_07421837.2|  lipoprotein lpqS [Mycobacterium ...   253    6e-66
gi|294996328|ref|ZP_06802019.1|  lipoprotein lpqS [Mycobacterium ...   253    7e-66
gi|31792035|ref|NP_854528.1|  lipoprotein LpqS [Mycobacterium bov...   252    1e-65
gi|289756933|ref|ZP_06516311.1|  lipoprotein lpqS [Mycobacterium ...   210    7e-53
gi|167967567|ref|ZP_02549844.1|  lipoprotein lpqS [Mycobacterium ...   171    4e-41
gi|183984737|ref|YP_001853028.1|  lipoprotein LpqS [Mycobacterium...   140    9e-32
gi|118616203|ref|YP_904535.1|  lipoprotein LpqS [Mycobacterium ul...   137    5e-31
gi|240170781|ref|ZP_04749440.1|  lipoprotein LpqS [Mycobacterium ...   112    1e-23
gi|240168858|ref|ZP_04747517.1|  hypothetical protein MkanA1_0607...  77.8    5e-13
gi|296165817|ref|ZP_06848317.1|  LpqS family protein [Mycobacteri...  71.2    5e-11
gi|145221492|ref|YP_001132170.1|  hypothetical protein Mflv_0898 ...  67.8    5e-10
gi|120406799|ref|YP_956628.1|  hypothetical protein Mvan_5857 [My...  61.2    5e-08
gi|315441573|ref|YP_004074450.1|  hypothetical protein Mspyr1_545...  59.7    2e-07
gi|315446727|ref|YP_004079606.1|  hypothetical protein Mspyr1_524...  55.8    2e-06
gi|126437128|ref|YP_001072819.1|  hypothetical protein Mjls_4561 ...  55.1    3e-06
gi|119870292|ref|YP_940244.1|  hypothetical protein Mkms_4262 [My...  48.5    3e-04
gi|108801160|ref|YP_641357.1|  hypothetical protein Mmcs_4196 [My...  48.5    3e-04
gi|126436994|ref|YP_001072685.1|  hypothetical protein Mjls_4423 ...  47.0    0.001
gi|296165805|ref|ZP_06848309.1|  LpqS family protein [Mycobacteri...  46.6    0.001
gi|296165758|ref|ZP_06848272.1|  conserved hypothetical protein [...  40.0    0.10 
gi|296170372|ref|ZP_06851962.1|  conserved hypothetical protein [...  40.0    0.12 
gi|169628365|ref|YP_001702014.1|  hypothetical protein MAB_1272 [...  35.4    2.6  
gi|108798414|ref|YP_638611.1|  hypothetical protein Mmcs_1443 [My...  33.9    7.4  


>gi|15840262|ref|NP_335299.1| hypothetical protein MT0870 [Mycobacterium tuberculosis CDC1551]
 gi|148822055|ref|YP_001286809.1| lipoprotein lpqS [Mycobacterium tuberculosis F11]
 gi|253800131|ref|YP_003033132.1| lipoprotein lpqS [Mycobacterium tuberculosis KZN 1435]
 33 more sequence titles
 Length=138

 Score =  255 bits (651),  Expect = 2e-66, Method: Compositional matrix adjust.
 Identities = 130/130 (100%), Positives = 130/130 (100%), Gaps = 0/130 (0%)

Query  1    VVWMRSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDN  60
            VVWMRSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDN
Sbjct  9    VVWMRSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDN  68

Query  61   SMPPCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAARGPPAAQGSVRTGQD  120
            SMPPCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAARGPPAAQGSVRTGQD
Sbjct  69   SMPPCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAARGPPAAQGSVRTGQD  128

Query  121  LLTRFCLARR  130
            LLTRFCLARR
Sbjct  129  LLTRFCLARR  138


>gi|15607987|ref|NP_215362.1| lipoprotein LpqS [Mycobacterium tuberculosis H37Rv]
 gi|148660624|ref|YP_001282147.1| putative lipoprotein LpqS [Mycobacterium tuberculosis H37Ra]
 gi|254549823|ref|ZP_05140270.1| lipoprotein lpqS [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 25 more sequence titles
 Length=130

 Score =  253 bits (647),  Expect = 5e-66, Method: Compositional matrix adjust.
 Identities = 129/130 (99%), Positives = 130/130 (100%), Gaps = 0/130 (0%)

Query  1    VVWMRSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDN  60
            +VWMRSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDN
Sbjct  1    MVWMRSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDN  60

Query  61   SMPPCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAARGPPAAQGSVRTGQD  120
            SMPPCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAARGPPAAQGSVRTGQD
Sbjct  61   SMPPCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAARGPPAAQGSVRTGQD  120

Query  121  LLTRFCLARR  130
            LLTRFCLARR
Sbjct  121  LLTRFCLARR  130


>gi|308370515|ref|ZP_07421837.2| lipoprotein lpqS [Mycobacterium tuberculosis SUMu003]
 gi|308331678|gb|EFP20529.1| lipoprotein lpqS [Mycobacterium tuberculosis SUMu003]
Length=138

 Score =  253 bits (647),  Expect = 6e-66, Method: Compositional matrix adjust.
 Identities = 129/130 (99%), Positives = 129/130 (99%), Gaps = 0/130 (0%)

Query  1    VVWMRSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDN  60
            VVWMRSAIVAVALGVTVAAVAA CWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDN
Sbjct  9    VVWMRSAIVAVALGVTVAAVAAVCWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDN  68

Query  61   SMPPCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAARGPPAAQGSVRTGQD  120
            SMPPCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAARGPPAAQGSVRTGQD
Sbjct  69   SMPPCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAARGPPAAQGSVRTGQD  128

Query  121  LLTRFCLARR  130
            LLTRFCLARR
Sbjct  129  LLTRFCLARR  138


>gi|294996328|ref|ZP_06802019.1| lipoprotein lpqS [Mycobacterium tuberculosis 210]
Length=150

 Score =  253 bits (646),  Expect = 7e-66, Method: Compositional matrix adjust.
 Identities = 129/129 (100%), Positives = 129/129 (100%), Gaps = 0/129 (0%)

Query  1    VVWMRSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDN  60
            VVWMRSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDN
Sbjct  6    VVWMRSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDN  65

Query  61   SMPPCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAARGPPAAQGSVRTGQD  120
            SMPPCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAARGPPAAQGSVRTGQD
Sbjct  66   SMPPCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAARGPPAAQGSVRTGQD  125

Query  121  LLTRFCLAR  129
            LLTRFCLAR
Sbjct  126  LLTRFCLAR  134


>gi|31792035|ref|NP_854528.1| lipoprotein LpqS [Mycobacterium bovis AF2122/97]
 gi|121636770|ref|YP_976993.1| putative lipoprotein lpqS [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|224989241|ref|YP_002643928.1| putative lipoprotein [Mycobacterium bovis BCG str. Tokyo 172]
 8 more sequence titles
 Length=130

 Score =  252 bits (644),  Expect = 1e-65, Method: Compositional matrix adjust.
 Identities = 128/130 (99%), Positives = 129/130 (99%), Gaps = 0/130 (0%)

Query  1    VVWMRSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDN  60
            +VWMRSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDN
Sbjct  1    MVWMRSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDN  60

Query  61   SMPPCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAARGPPAAQGSVRTGQD  120
            SMPPCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAARGPPAAQGSVRTGQD
Sbjct  61   SMPPCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAARGPPAAQGSVRTGQD  120

Query  121  LLTRFCLARR  130
            LLTRFCL RR
Sbjct  121  LLTRFCLVRR  130


>gi|289756933|ref|ZP_06516311.1| lipoprotein lpqS [Mycobacterium tuberculosis T85]
 gi|289712497|gb|EFD76509.1| lipoprotein lpqS [Mycobacterium tuberculosis T85]
Length=116

 Score =  210 bits (534),  Expect = 7e-53, Method: Compositional matrix adjust.
 Identities = 108/108 (100%), Positives = 108/108 (100%), Gaps = 0/108 (0%)

Query  1    VVWMRSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDN  60
            VVWMRSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDN
Sbjct  9    VVWMRSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDN  68

Query  61   SMPPCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAARGP  108
            SMPPCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAARGP
Sbjct  69   SMPPCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAARGP  116


>gi|167967567|ref|ZP_02549844.1| lipoprotein lpqS [Mycobacterium tuberculosis H37Ra]
Length=150

 Score =  171 bits (432),  Expect = 4e-41, Method: Compositional matrix adjust.
 Identities = 84/85 (99%), Positives = 85/85 (100%), Gaps = 0/85 (0%)

Query  1   VVWMRSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDN  60
           VVWMRSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDN
Sbjct  6   VVWMRSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDN  65

Query  61  SMPPCPERLATAVLPRSATPVLLPD  85
           SMPPCPERLATAVLPRSATPVLLP+
Sbjct  66  SMPPCPERLATAVLPRSATPVLLPE  90


>gi|183984737|ref|YP_001853028.1| lipoprotein LpqS [Mycobacterium marinum M]
 gi|183178063|gb|ACC43173.1| lipoprotein LpqS [Mycobacterium marinum M]
Length=138

 Score =  140 bits (352),  Expect = 9e-32, Method: Compositional matrix adjust.
 Identities = 83/130 (64%), Positives = 93/130 (72%), Gaps = 0/130 (0%)

Query  1    VVWMRSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDN  60
            VVW RSAIVA+AL    A VAA CWLPQ+H   AH +HPL TSVGSEFV++ DH HLVDN
Sbjct  9    VVWTRSAIVALALAWAAAVVAAQCWLPQVHLQPAHSDHPLATSVGSEFVLSADHAHLVDN  68

Query  61   SMPPCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAARGPPAAQGSVRTGQD  120
            S PPCPE+ ATAVLPR+AT       VAAA G+   LT  V PA RGPP+    VR GQD
Sbjct  69   STPPCPEQFATAVLPRTATMSFESAPVAAAAGIPGILTYLVVPAGRGPPSVPVYVRAGQD  128

Query  121  LLTRFCLARR  130
            LLTR+C ARR
Sbjct  129  LLTRYCRARR  138


>gi|118616203|ref|YP_904535.1| lipoprotein LpqS [Mycobacterium ulcerans Agy99]
 gi|118568313|gb|ABL03064.1| lipoprotein LpqS [Mycobacterium ulcerans Agy99]
Length=138

 Score =  137 bits (345),  Expect = 5e-31, Method: Compositional matrix adjust.
 Identities = 82/130 (64%), Positives = 92/130 (71%), Gaps = 0/130 (0%)

Query  1    VVWMRSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDN  60
            VVW RSAIVA+AL    A VAA CWLPQ+H   AH +HPL TSVGSEFV++ DH HLVDN
Sbjct  9    VVWTRSAIVALALAWAAAVVAAQCWLPQVHLQPAHSDHPLATSVGSEFVLSADHAHLVDN  68

Query  61   SMPPCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAARGPPAAQGSVRTGQD  120
            S PPCPE+ ATAVL R+AT       VAAA G+   LT  V PA RGPP+    VR GQD
Sbjct  69   STPPCPEQFATAVLSRTATMSFESAPVAAAAGIPGILTYLVVPAGRGPPSVPVYVRAGQD  128

Query  121  LLTRFCLARR  130
            LLTR+C ARR
Sbjct  129  LLTRYCRARR  138


>gi|240170781|ref|ZP_04749440.1| lipoprotein LpqS [Mycobacterium kansasii ATCC 12478]
Length=138

 Score =  112 bits (281),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 73/128 (58%), Positives = 85/128 (67%), Gaps = 0/128 (0%)

Query  2    VWMRSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDNS  61
            VW RSA +A+ L V VAAVAA CWLPQL R  AHP+HPL+T++GSEF +N  H HL D+S
Sbjct  10   VWTRSARIAIVLVVVVAAVAAQCWLPQLDRQPAHPSHPLSTAMGSEFAVNIGHAHLTDDS  69

Query  62   MPPCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAARGPPAAQGSVRTGQDL  121
              PCP   A AV+PR  TP     VV  A G+ +  T  V  A RGPP     VRTGQDL
Sbjct  70   ASPCPPLQAGAVMPRPDTPAFEAAVVVVAGGIASMPTAAVVVAGRGPPTLPVDVRTGQDL  129

Query  122  LTRFCLAR  129
            LTRFCL+R
Sbjct  130  LTRFCLSR  137


>gi|240168858|ref|ZP_04747517.1| hypothetical protein MkanA1_06075 [Mycobacterium kansasii ATCC 
12478]
Length=169

 Score = 77.8 bits (190),  Expect = 5e-13, Method: Compositional matrix adjust.
 Identities = 46/111 (42%), Positives = 58/111 (53%), Gaps = 0/111 (0%)

Query  20   VAAACWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDNSMPPCPERLATAVLPRSAT  79
            V   C LP+     AHP+     +   + VIN  H    D +   CP +LATAVLP+S T
Sbjct  59   VGGHCGLPRWEFSPAHPSQSRLATPTDQLVINGKHAQRSDAAASLCPGKLATAVLPQSVT  118

Query  80   PVLLPDVVAAAPGMTAALTDPVAPAARGPPAAQGSVRTGQDLLTRFCLARR  130
            P L    + A  G+   L DPVA   R PPA    V +G+ LLTR C+ARR
Sbjct  119  PALGVVAMLAVAGLVGLLVDPVAFGGRSPPATPHCVTSGRVLLTRLCVARR  169


>gi|296165817|ref|ZP_06848317.1| LpqS family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898830|gb|EFG78336.1| LpqS family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=139

 Score = 71.2 bits (173),  Expect = 5e-11, Method: Compositional matrix adjust.
 Identities = 51/131 (39%), Positives = 64/131 (49%), Gaps = 19/131 (14%)

Query  17   VAAVAAACWLPQL-------------HRHVAHPNHPLTTSVGSEFVINTDHGHLVDNSMP  63
            V AV AA WL                   V+HP H L  S+G EF ++ DH H+   S  
Sbjct  11   VVAVGAAAWLAMWGVLIGAHSIMGHSQSSVSHPAHALVASLGGEFTVDVDHPHVGKGSSG  70

Query  64   PCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVA----PAARGPPAAQGSVRTGQ  119
               E+  TAVLPRS    ++  ++A       A+T   A    PA RGPP A     TGQ
Sbjct  71   GHHEQFTTAVLPRSGA--VVAALIALGVVAAVAVTAGSAWFGLPAGRGPPRAPAFSVTGQ  128

Query  120  DLLTRFCLARR  130
            D+LTRFCL+RR
Sbjct  129  DVLTRFCLSRR  139


>gi|145221492|ref|YP_001132170.1| hypothetical protein Mflv_0898 [Mycobacterium gilvum PYR-GCK]
 gi|145213978|gb|ABP43382.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
Length=136

 Score = 67.8 bits (164),  Expect = 5e-10, Method: Compositional matrix adjust.
 Identities = 47/127 (38%), Positives = 68/127 (54%), Gaps = 3/127 (2%)

Query  5    RSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTSVGSEFVINTDHGHLVDNSMPP  64
            R A+VA  L   +  VAA   LP +    AH  HPL ++VG+   +  DH H+    + P
Sbjct  12   RRAVVAAMLAFWIVIVAAEWALPGIEAAPAHGPHPLASAVGAPVAVQLDHPHISQGGIAP  71

Query  65   CPERLATAVLPRSATPVLLPDVVAAAPGMTAAL-TDPVAPAARGPPAAQGSVRTGQDLLT  123
             PE  A AVLPR    ++   +V+A   + A     P+ P  RGPP +  + +TG+D+L 
Sbjct  72   SPESFAEAVLPRGTVTLIALALVSALAVLPALWRYAPLTP-IRGPPRSPVA-QTGRDVLV  129

Query  124  RFCLARR  130
            R C+ARR
Sbjct  130  RLCIARR  136


>gi|120406799|ref|YP_956628.1| hypothetical protein Mvan_5857 [Mycobacterium vanbaalenii PYR-1]
 gi|119959617|gb|ABM16622.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=138

 Score = 61.2 bits (147),  Expect = 5e-08, Method: Compositional matrix adjust.
 Identities = 42/126 (34%), Positives = 59/126 (47%), Gaps = 1/126 (0%)

Query  5    RSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTS-VGSEFVINTDHGHLVDNSMP  63
            R A+ A  +      V A   LP +    AH  HPL  S +G+   +  DH H+   + P
Sbjct  12   RRAVAAALIAFWTVVVGAEWALPGIESAHAHGPHPLAASAIGAHSAVADDHPHVSKGASP  71

Query  64   PCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAARGPPAAQGSVRTGQDLLT  123
              P+ LA AVLPR    ++   ++AA   +          A RGPP    +  TG+DLL 
Sbjct  72   LAPDTLAEAVLPRGTVSLIALGLMAALAVLPLVWHQAALAAIRGPPRRSSTTLTGRDLLA  131

Query  124  RFCLAR  129
            R C+AR
Sbjct  132  RLCIAR  137


>gi|315441573|ref|YP_004074450.1| hypothetical protein Mspyr1_54560 [Mycobacterium sp. Spyr1]
 gi|315265228|gb|ADU01969.1| hypothetical protein Mspyr1_54560 [Mycobacterium sp. Spyr1]
Length=148

 Score = 59.7 bits (143),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 36/96 (38%), Positives = 49/96 (52%), Gaps = 0/96 (0%)

Query  35   HPNHPLTTSVGSEFVINTDHGHLVDNSMPPCPERLATAVLPRSATPVLLPDVVAAAPGMT  94
            H  H +TT+V  EF +  DH H    S    P+  ATAV+PR AT ++   +  A     
Sbjct  53   HGPHAVTTAVSHEFAVVMDHPHFQHASAAISPDTFATAVVPRVATVLVALGLAVAVAAAW  112

Query  95   AALTDPVAPAARGPPAAQGSVRTGQDLLTRFCLARR  130
                  +  A RGPP   G V +G+ LL RFC++RR
Sbjct  113  LYRGHGIWAAVRGPPRGLGPVVSGRQLLARFCISRR  148


>gi|315446727|ref|YP_004079606.1| hypothetical protein Mspyr1_52460 [Mycobacterium sp. Spyr1]
 gi|315265030|gb|ADU01772.1| hypothetical protein Mspyr1_52460 [Mycobacterium sp. Spyr1]
Length=136

 Score = 55.8 bits (133),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 34/96 (36%), Positives = 47/96 (49%), Gaps = 0/96 (0%)

Query  35   HPNHPLTTSVGSEFVINTDHGHLVDNSMPPCPERLATAVLPRSATPVLLPDVVAAAPGMT  94
            H  H L++ V  +F    +H H  D S P  P+  A A LPR+ T ++   +VA      
Sbjct  41   HGPHALSSGVFVDFAAIVEHPHAQDGSAPMAPDAFAEAALPRTVTLLVAFGLVAIIGAAF  100

Query  95   AALTDPVAPAARGPPAAQGSVRTGQDLLTRFCLARR  130
            +  +   +   RGPP   G V  GQ LL R C+ARR
Sbjct  101  SWRSTGASVVIRGPPRWGGYVIAGQHLLLRLCIARR  136


>gi|126437128|ref|YP_001072819.1| hypothetical protein Mjls_4561 [Mycobacterium sp. JLS]
 gi|126236928|gb|ABO00329.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=138

 Score = 55.1 bits (131),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 40/127 (32%), Positives = 56/127 (45%), Gaps = 1/127 (0%)

Query  5    RSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTS-VGSEFVINTDHGHLVDNSMP  63
            R AIVA  +      V A   LP ++    H  H L TS VG+   +  DH HL      
Sbjct  12   RRAIVAALIAFWTVIVGAEWALPGVNAAPTHGPHTLATSAVGAPMSVELDHPHLSQPDAE  71

Query  64   PCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAARGPPAAQGSVRTGQDLLT  123
              P+ LA A+LPR    ++   +      +            RGPP    ++RTG+D+L 
Sbjct  72   CTPDTLAEAILPRGTVSLIALALGLVVVVLPLLWCQAAKAPIRGPPRNARALRTGRDVLA  131

Query  124  RFCLARR  130
              C+ARR
Sbjct  132  HLCIARR  138


>gi|119870292|ref|YP_940244.1| hypothetical protein Mkms_4262 [Mycobacterium sp. KMS]
 gi|119696381|gb|ABL93454.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=191

 Score = 48.5 bits (114),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 39/101 (39%), Positives = 49/101 (49%), Gaps = 4/101 (3%)

Query  32   HVAHPNHPLTTSVGSEFVINTDHGHLVDNSMPPCPERLATAVLPRSATPVLLPDVVAAAP  91
            H  H  H L      +    TDH H  + S+P  P+  A AV PR+   V L  +   A 
Sbjct  93   HPHHGPHALAAGPHGDPAAMTDHAHFENGSIPVSPDTYADAVRPRAT--VALMALGLLAA  150

Query  92   GMTAALTDPVAPAA--RGPPAAQGSVRTGQDLLTRFCLARR  130
             +  A+    AP A  RGPP   G V TG+ LLTR C+ARR
Sbjct  151  MVAVAVFYRGAPLALIRGPPRGLGEVLTGRVLLTRLCIARR  191


>gi|108801160|ref|YP_641357.1| hypothetical protein Mmcs_4196 [Mycobacterium sp. MCS]
 gi|108771579|gb|ABG10301.1| hypothetical protein Mmcs_4196 [Mycobacterium sp. MCS]
Length=182

 Score = 48.5 bits (114),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 39/101 (39%), Positives = 49/101 (49%), Gaps = 4/101 (3%)

Query  32   HVAHPNHPLTTSVGSEFVINTDHGHLVDNSMPPCPERLATAVLPRSATPVLLPDVVAAAP  91
            H  H  H L      +    TDH H  + S+P  P+  A AV PR+   V L  +   A 
Sbjct  84   HPHHGPHALAAGPHGDPAAMTDHAHFENGSIPVSPDTYADAVRPRAT--VALMALGLLAA  141

Query  92   GMTAALTDPVAPAA--RGPPAAQGSVRTGQDLLTRFCLARR  130
             +  A+    AP A  RGPP   G V TG+ LLTR C+ARR
Sbjct  142  MVAVAVFYRGAPLALIRGPPRGLGEVLTGRVLLTRLCIARR  182


>gi|126436994|ref|YP_001072685.1| hypothetical protein Mjls_4423 [Mycobacterium sp. JLS]
 gi|126236794|gb|ABO00195.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=191

 Score = 47.0 bits (110),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 35/99 (36%), Positives = 46/99 (47%), Gaps = 0/99 (0%)

Query  32   HVAHPNHPLTTSVGSEFVINTDHGHLVDNSMPPCPERLATAVLPRSATPVLLPDVVAAAP  91
            H  H  H L      +    TDH H  + S+P  P+  A AV PR+   +L   ++AA  
Sbjct  93   HPHHGPHALAAGPHGDPAAMTDHAHFENGSIPVSPDTYADAVRPRATVALLALGLLAAMV  152

Query  92   GMTAALTDPVAPAARGPPAAQGSVRTGQDLLTRFCLARR  130
             +            RGPP   G V TG+ LLTR C+ARR
Sbjct  153  AVAVFYRGAPLALIRGPPRGLGEVLTGRVLLTRLCIARR  191


>gi|296165805|ref|ZP_06848309.1| LpqS family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898842|gb|EFG78344.1| LpqS family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=125

 Score = 46.6 bits (109),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 34/83 (41%), Positives = 39/83 (47%), Gaps = 2/83 (2%)

Query  50   INTDHGHLVDNSMPPCPERLATAVLPRSATPV--LLPDVVAAAPGMTAALTDPVAPAARG  107
               DH           PE+   AVLPRS  PV  L+     AA  +   L     PA RG
Sbjct  43   FGVDHPRATKGFASEHPEQSTAAVLPRSGAPVTTLIALGAVAAVAVAGGLACFGLPAGRG  102

Query  108  PPAAQGSVRTGQDLLTRFCLARR  130
            PP       TGQD+LTRFCL+RR
Sbjct  103  PPHTPAFSVTGQDVLTRFCLSRR  125


>gi|296165758|ref|ZP_06848272.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295898883|gb|EFG78375.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=117

 Score = 40.0 bits (92),  Expect = 0.10, Method: Compositional matrix adjust.
 Identities = 27/84 (33%), Positives = 38/84 (46%), Gaps = 0/84 (0%)

Query  47   EFVINTDHGHLVDNSMPPCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAAR  106
            ++ I  DH H   +S     ++  TA    S   +       +  G    L  P + + R
Sbjct  34   KYQIPPDHAHAERDSSTHHDDQCMTAAFTPSVAALATFGAAVSPVGGAGWLARPASVSGR  93

Query  107  GPPAAQGSVRTGQDLLTRFCLARR  130
            GPPAA G    G+ LLTR CL+RR
Sbjct  94   GPPAALGMRCAGRHLLTRLCLSRR  117


>gi|296170372|ref|ZP_06851962.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295894965|gb|EFG74685.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=138

 Score = 40.0 bits (92),  Expect = 0.12, Method: Compositional matrix adjust.
 Identities = 22/46 (48%), Positives = 29/46 (64%), Gaps = 1/46 (2%)

Query  85   DVVAAAPGMTAALTDPVAPAARGPPAAQG-SVRTGQDLLTRFCLAR  129
            D+V AA  +  +L  PV  A R PP   G + R G++LLTRFC+AR
Sbjct  92   DIVVAAIALAGSLAGPVLRAPRAPPRTAGFAFRWGRNLLTRFCIAR  137


>gi|169628365|ref|YP_001702014.1| hypothetical protein MAB_1272 [Mycobacterium abscessus ATCC 19977]
 gi|169240332|emb|CAM61360.1| Hypothetical protein MAB_1272 [Mycobacterium abscessus]
Length=139

 Score = 35.4 bits (80),  Expect = 2.6, Method: Compositional matrix adjust.
 Identities = 29/84 (35%), Positives = 38/84 (46%), Gaps = 5/84 (5%)

Query  51   NTDHGHLVDNSMP--PCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAARGP  108
            +  H HL DNS+    C        L R   P+ +  V+AA    T       A  +RGP
Sbjct  57   SASHAHL-DNSIHQLSCQTLDGMVGLTRGLNPLRVLIVLAALVLATVVFQPVAAHLSRGP  115

Query  109  PAAQG--SVRTGQDLLTRFCLARR  130
            P   G    RTG+D+LT  C+ RR
Sbjct  116  PLPAGCYEARTGRDILTHLCVIRR  139


>gi|108798414|ref|YP_638611.1| hypothetical protein Mmcs_1443 [Mycobacterium sp. MCS]
 gi|119867511|ref|YP_937463.1| hypothetical protein Mkms_1461 [Mycobacterium sp. KMS]
 gi|108768833|gb|ABG07555.1| hypothetical protein Mmcs_1443 [Mycobacterium sp. MCS]
 gi|119693600|gb|ABL90673.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=195

 Score = 33.9 bits (76),  Expect = 7.4, Method: Compositional matrix adjust.
 Identities = 35/127 (28%), Positives = 49/127 (39%), Gaps = 1/127 (0%)

Query  5    RSAIVAVALGVTVAAVAAACWLPQLHRHVAHPNHPLTTSV-GSEFVINTDHGHLVDNSMP  63
            R A+V   L   +  V A   LP       H  H L  S  G+      DH H   +   
Sbjct  69   RRALVGALLAFWIVIVGAEWALPGTEPPTVHAPHTLAASAPGAPVSAEFDHPHASTSDGA  128

Query  64   PCPERLATAVLPRSATPVLLPDVVAAAPGMTAALTDPVAPAARGPPAAQGSVRTGQDLLT  123
               + L   + PR A  ++   + AA         D      RGPP      ++G+D+L 
Sbjct  129  CYLDLLMDVIAPRGAFMLIALALAAAVTVAPTRWRDGGVGPIRGPPRIPVWHQSGRDMLV  188

Query  124  RFCLARR  130
            R C+ARR
Sbjct  189  RLCIARR  195



Lambda     K      H
   0.322    0.132    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 127765705240




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40