BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0850

Length=110
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|167966974|ref|ZP_02549251.1|  putative transposase [Mycobacter...   228    3e-58
gi|15607990|ref|NP_215365.1|  transposase [Mycobacterium tubercul...   227    4e-58
gi|254549826|ref|ZP_05140273.1|  transposase [Mycobacterium tuber...   226    7e-58
gi|148822058|ref|YP_001286812.1|  transposase [Mycobacterium tube...   226    9e-58
gi|296163979|ref|ZP_06846608.1|  possible transposase [Mycobacter...   102    2e-20
gi|255325194|ref|ZP_05366300.1|  transposase [Corynebacterium tub...  65.1    3e-09
gi|319950871|ref|ZP_08024751.1|  putative transposase [Dietzia ci...  57.4    6e-07
gi|340795397|ref|YP_004760860.1|  transposase for insertion seque...  55.5    3e-06
gi|340793932|ref|YP_004759395.1|  transposase for insertion seque...  55.5    3e-06
gi|340795380|ref|YP_004760843.1|  transposase for insertion seque...  55.5    3e-06
gi|340795655|ref|YP_004761118.1|  transposase for insertion seque...  55.1    3e-06
gi|340795735|ref|YP_004761198.1|  transposase for insertion seque...  54.7    4e-06
gi|343926042|ref|ZP_08765555.1|  putative transposase [Gordonia a...  54.7    4e-06
gi|340793030|ref|YP_004758493.1|  transposase for insertion seque...  54.3    5e-06
gi|16923688|gb|AAL31536.1|AF435074_1  transposase [Corynebacteriu...  53.9    8e-06
gi|319951125|ref|ZP_08024973.1|  putative transposase [Dietzia ci...  53.1    1e-05
gi|1130607|emb|CAA91438.1|  transposase [Corynebacterium glutamicum]  53.1    1e-05
gi|19553566|ref|NP_601568.1|  transposase [Corynebacterium glutam...  52.8    2e-05
gi|57157713|dbj|BAD83820.1|  transposase [Corynebacterium glutami...  52.8    2e-05
gi|1297342|gb|AAA98978.1|  transposase [synthetic construct] >gi|...  52.8    2e-05
gi|19552292|ref|NP_600294.1|  transposase [Corynebacterium glutam...  52.8    2e-05
gi|319951433|ref|ZP_08025244.1|  putative transposase [Dietzia ci...  52.0    3e-05
gi|256832661|ref|YP_003161388.1|  transposase IS204/IS1001/IS1096...  51.6    4e-05
gi|262200083|ref|YP_003271291.1|  transposase IS204/IS1001/IS1096...  51.2    4e-05
gi|259506126|ref|ZP_05749028.1|  transposase [Corynebacterium eff...  51.2    5e-05
gi|25026812|ref|NP_736866.1|  transposase [Corynebacterium effici...  50.8    6e-05
gi|343925704|ref|ZP_08765220.1|  putative transposase [Gordonia a...  50.8    6e-05
gi|296163935|ref|ZP_06846571.1|  transposase [Mycobacterium paras...  49.3    2e-04
gi|77454838|ref|YP_345706.1|  putative transposase [Rhodococcus e...  47.8    5e-04
gi|340795379|ref|YP_004760842.1|  transposase for insertion seque...  47.4    8e-04
gi|340793909|ref|YP_004759372.1|  transposase for insertion seque...  47.4    8e-04
gi|340793780|ref|YP_004759243.1|  transposase for insertion seque...  47.0    9e-04
gi|340793934|ref|YP_004759397.1|  transposase for insertion seque...  47.0    0.001
gi|340794642|ref|YP_004760105.1|  transposase for insertion seque...  46.2    0.001
gi|340794341|ref|YP_004759804.1|  transposase for insertion seque...  45.8    0.002
gi|319951435|ref|ZP_08025245.1|  putative transposase [Dietzia ci...  45.8    0.002
gi|227540983|ref|ZP_03971032.1|  possible transposase [Corynebact...  45.8    0.002
gi|296119403|ref|ZP_06837964.1|  transposase [Corynebacterium amm...  42.7    0.019
gi|309813296|ref|ZP_07707009.1|  transposase [Dermacoccus sp. Ell...  42.0    0.030
gi|46202882|ref|ZP_00208696.1|  COG3464: Transposase and inactiva...  41.6    0.041
gi|46202623|ref|ZP_00208592.1|  COG3464: Transposase and inactiva...  41.2    0.057
gi|227875640|ref|ZP_03993778.1|  conserved hypothetical protein [...  40.4    0.082
gi|315606220|ref|ZP_07881245.1|  transposase [Actinomyces sp. ora...  40.4    0.085
gi|269976631|ref|ZP_06183611.1|  transposase [Mobiluncus mulieris...  40.0    0.10 
gi|306818349|ref|ZP_07452075.1|  ISL3 family transposase [Mobilun...  40.0    0.11 
gi|308178789|ref|YP_003918195.1|  transposase of ISAar42, ISL3 fa...  40.0    0.12 
gi|297625438|ref|YP_003687201.1|  transposase [Propionibacterium ...  39.3    0.17 
gi|150377550|ref|YP_001314145.1|  transposase IS204/IS1001/IS1096...  39.3    0.18 
gi|256824105|ref|YP_003148065.1|  transposase family protein [Kyt...  38.9    0.23 
gi|315606222|ref|ZP_07881246.1|  transposase [Actinomyces sp. ora...  38.9    0.23 


>gi|167966974|ref|ZP_02549251.1| putative transposase [Mycobacterium tuberculosis H37Ra]
 gi|254231159|ref|ZP_04924486.1| hypothetical protein TBCG_00841 [Mycobacterium tuberculosis C]
 gi|308370517|ref|ZP_07421840.2| transposase [Mycobacterium tuberculosis SUMu003]
 16 more sequence titles
 
gi|308374117|ref|ZP_07434923.2| transposase [Mycobacterium tuberculosis SUMu006]
 gi|308376528|ref|ZP_07439176.2| transposase [Mycobacterium tuberculosis SUMu008]
 gi|308377529|ref|ZP_07479547.2| transposase [Mycobacterium tuberculosis SUMu009]
 gi|308378736|ref|ZP_07668816.1| transposase [Mycobacterium tuberculosis SUMu010]
 gi|308379884|ref|ZP_07669068.1| transposase [Mycobacterium tuberculosis SUMu011]
 gi|308397293|ref|ZP_07492481.2| transposase [Mycobacterium tuberculosis SUMu012]
 gi|124600218|gb|EAY59228.1| hypothetical protein TBCG_00841 [Mycobacterium tuberculosis C]
 gi|308331681|gb|EFP20532.1| transposase [Mycobacterium tuberculosis SUMu003]
 gi|308342956|gb|EFP31807.1| transposase [Mycobacterium tuberculosis SUMu006]
 gi|308350756|gb|EFP39607.1| transposase [Mycobacterium tuberculosis SUMu008]
 gi|308355417|gb|EFP44268.1| transposase [Mycobacterium tuberculosis SUMu009]
 gi|308359369|gb|EFP48220.1| transposase [Mycobacterium tuberculosis SUMu010]
 gi|308363277|gb|EFP52128.1| transposase [Mycobacterium tuberculosis SUMu011]
 gi|308366945|gb|EFP55796.1| transposase [Mycobacterium tuberculosis SUMu012]
 gi|339293864|gb|AEJ45975.1| putative transposase [Mycobacterium tuberculosis CCDC5079]
 gi|339297505|gb|AEJ49615.1| putative transposase [Mycobacterium tuberculosis CCDC5180]
Length=115

 Score =  228 bits (580),  Expect = 3e-58, Method: Compositional matrix adjust.
 Identities = 110/110 (100%), Positives = 110/110 (100%), Gaps = 0/110 (0%)

Query  1    VTRDPHSPDCGREGSYRDTITRPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVFNQDLA  60
            VTRDPHSPDCGREGSYRDTITRPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVFNQDLA
Sbjct  6    VTRDPHSPDCGREGSYRDTITRPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVFNQDLA  65

Query  61   NVDQYLVVNQLAHQLIDGSSLIPDADKRWDARRHADMTHHLTSSLKENQS  110
            NVDQYLVVNQLAHQLIDGSSLIPDADKRWDARRHADMTHHLTSSLKENQS
Sbjct  66   NVDQYLVVNQLAHQLIDGSSLIPDADKRWDARRHADMTHHLTSSLKENQS  115


>gi|15607990|ref|NP_215365.1| transposase [Mycobacterium tuberculosis H37Rv]
 gi|15840263|ref|NP_335300.1| IS1606', transposase [Mycobacterium tuberculosis CDC1551]
 gi|31792038|ref|NP_854531.1| transposase [Mycobacterium bovis AF2122/97]
 47 more sequence titles
 
gi|121636773|ref|YP_976996.1| putative transposase [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148660627|ref|YP_001282150.1| putative transposase [Mycobacterium tuberculosis H37Ra]
 gi|224989244|ref|YP_002643931.1| putative transposase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|254363785|ref|ZP_04979831.1| transposase [Mycobacterium tuberculosis str. Haarlem]
 gi|289442259|ref|ZP_06432003.1| transposase [Mycobacterium tuberculosis T46]
 gi|289446415|ref|ZP_06436159.1| transposase [Mycobacterium tuberculosis CPHL_A]
 gi|289568812|ref|ZP_06449039.1| transposase [Mycobacterium tuberculosis T17]
 gi|289573472|ref|ZP_06453699.1| transposase [Mycobacterium tuberculosis K85]
 gi|289744576|ref|ZP_06503954.1| transposase [Mycobacterium tuberculosis 02_1987]
 gi|289749369|ref|ZP_06508747.1| transposase [Mycobacterium tuberculosis T92]
 gi|289752904|ref|ZP_06512282.1| transposase [Mycobacterium tuberculosis EAS054]
 gi|289756936|ref|ZP_06516314.1| transposase [Mycobacterium tuberculosis T85]
 gi|294996331|ref|ZP_06802022.1| putative transposase [Mycobacterium tuberculosis 210]
 gi|298524343|ref|ZP_07011752.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|306774974|ref|ZP_07413311.1| transposase [Mycobacterium tuberculosis SUMu001]
 gi|306782112|ref|ZP_07420449.1| transposase [Mycobacterium tuberculosis SUMu002]
 gi|306787882|ref|ZP_07426204.1| transposase [Mycobacterium tuberculosis SUMu004]
 gi|306792223|ref|ZP_07430525.1| transposase [Mycobacterium tuberculosis SUMu005]
 gi|306806690|ref|ZP_07443358.1| transposase [Mycobacterium tuberculosis SUMu007]
 gi|339630915|ref|YP_004722557.1| transposase [Mycobacterium africanum GM041182]
 gi|340625864|ref|YP_004744316.1| putative transposase (fragment) [Mycobacterium canettii CIPT 
140010059]
 gi|2916909|emb|CAA17656.1| PUTATIVE TRANSPOSASE (FRAGMENT) [Mycobacterium tuberculosis H37Rv]
 gi|13880422|gb|AAK45114.1| IS1606', transposase [Mycobacterium tuberculosis CDC1551]
 gi|31617625|emb|CAD93735.1| PUTATIVE TRANSPOSASE (FRAGMENT) [Mycobacterium bovis AF2122/97]
 gi|121492420|emb|CAL70888.1| Putative transposase (fragment) [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|134149299|gb|EBA41344.1| transposase [Mycobacterium tuberculosis str. Haarlem]
 gi|148504779|gb|ABQ72588.1| putative transposase [Mycobacterium tuberculosis H37Ra]
 gi|224772357|dbj|BAH25163.1| putative transposase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|289415178|gb|EFD12418.1| transposase [Mycobacterium tuberculosis T46]
 gi|289419373|gb|EFD16574.1| transposase [Mycobacterium tuberculosis CPHL_A]
 gi|289537903|gb|EFD42481.1| transposase [Mycobacterium tuberculosis K85]
 gi|289542566|gb|EFD46214.1| transposase [Mycobacterium tuberculosis T17]
 gi|289685104|gb|EFD52592.1| transposase [Mycobacterium tuberculosis 02_1987]
 gi|289689956|gb|EFD57385.1| transposase [Mycobacterium tuberculosis T92]
 gi|289693491|gb|EFD60920.1| transposase [Mycobacterium tuberculosis EAS054]
 gi|289712500|gb|EFD76512.1| transposase [Mycobacterium tuberculosis T85]
 gi|298494137|gb|EFI29431.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308216470|gb|EFO75869.1| transposase [Mycobacterium tuberculosis SUMu001]
 gi|308325191|gb|EFP14042.1| transposase [Mycobacterium tuberculosis SUMu002]
 gi|308335481|gb|EFP24332.1| transposase [Mycobacterium tuberculosis SUMu004]
 gi|308339279|gb|EFP28130.1| transposase [Mycobacterium tuberculosis SUMu005]
 gi|308346840|gb|EFP35691.1| transposase [Mycobacterium tuberculosis SUMu007]
 gi|323720713|gb|EGB29789.1| transposase [Mycobacterium tuberculosis CDC1551A]
 gi|326904930|gb|EGE51863.1| transposase [Mycobacterium tuberculosis W-148]
 gi|339330271|emb|CCC25931.1| putative transposase (fragment) [Mycobacterium africanum GM041182]
 gi|340004054|emb|CCC43190.1| putative transposase (fragment) [Mycobacterium canettii CIPT 
140010059]
 gi|341600789|emb|CCC63460.1| putative transposase (fragment) [Mycobacterium bovis BCG str. 
Moreau RDJ]
Length=110

 Score =  227 bits (579),  Expect = 4e-58, Method: Compositional matrix adjust.
 Identities = 109/110 (99%), Positives = 110/110 (100%), Gaps = 0/110 (0%)

Query  1    VTRDPHSPDCGREGSYRDTITRPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVFNQDLA  60
            +TRDPHSPDCGREGSYRDTITRPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVFNQDLA
Sbjct  1    MTRDPHSPDCGREGSYRDTITRPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVFNQDLA  60

Query  61   NVDQYLVVNQLAHQLIDGSSLIPDADKRWDARRHADMTHHLTSSLKENQS  110
            NVDQYLVVNQLAHQLIDGSSLIPDADKRWDARRHADMTHHLTSSLKENQS
Sbjct  61   NVDQYLVVNQLAHQLIDGSSLIPDADKRWDARRHADMTHHLTSSLKENQS  110


>gi|254549826|ref|ZP_05140273.1| transposase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
Length=115

 Score =  226 bits (577),  Expect = 7e-58, Method: Compositional matrix adjust.
 Identities = 109/110 (99%), Positives = 109/110 (99%), Gaps = 0/110 (0%)

Query  1    VTRDPHSPDCGREGSYRDTITRPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVFNQDLA  60
            VTRDPHSPDCGREGSYRDTITRPLTDLPVAGYPLVPRVA PRYRCTTPQCGRAVFNQDLA
Sbjct  6    VTRDPHSPDCGREGSYRDTITRPLTDLPVAGYPLVPRVAKPRYRCTTPQCGRAVFNQDLA  65

Query  61   NVDQYLVVNQLAHQLIDGSSLIPDADKRWDARRHADMTHHLTSSLKENQS  110
            NVDQYLVVNQLAHQLIDGSSLIPDADKRWDARRHADMTHHLTSSLKENQS
Sbjct  66   NVDQYLVVNQLAHQLIDGSSLIPDADKRWDARRHADMTHHLTSSLKENQS  115


>gi|148822058|ref|YP_001286812.1| transposase [Mycobacterium tuberculosis F11]
 gi|253800128|ref|YP_003033129.1| transposase [Mycobacterium tuberculosis KZN 1435]
 gi|289555369|ref|ZP_06444579.1| transposase [Mycobacterium tuberculosis KZN 605]
 10 more sequence titles
 
gi|289760982|ref|ZP_06520360.1| transposase [Mycobacterium tuberculosis GM 1503]
 gi|297633367|ref|ZP_06951147.1| transposase [Mycobacterium tuberculosis KZN 4207]
 gi|297730352|ref|ZP_06959470.1| transposase [Mycobacterium tuberculosis KZN R506]
 gi|313657678|ref|ZP_07814558.1| transposase [Mycobacterium tuberculosis KZN V2475]
 gi|148720585|gb|ABR05210.1| transposase [Mycobacterium tuberculosis F11]
 gi|253321631|gb|ACT26234.1| transposase [Mycobacterium tuberculosis KZN 1435]
 gi|289440001|gb|EFD22494.1| transposase [Mycobacterium tuberculosis KZN 605]
 gi|289708488|gb|EFD72504.1| transposase [Mycobacterium tuberculosis GM 1503]
 gi|328459866|gb|AEB05289.1| transposase [Mycobacterium tuberculosis KZN 4207]
 gi|344218677|gb|AEM99307.1| transposase [Mycobacterium tuberculosis CTRI-2]
Length=110

 Score =  226 bits (576),  Expect = 9e-58, Method: Compositional matrix adjust.
 Identities = 108/110 (99%), Positives = 109/110 (99%), Gaps = 0/110 (0%)

Query  1    VTRDPHSPDCGREGSYRDTITRPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVFNQDLA  60
            +TRDPHSPDCGREGSYRDTITRPLTDLPVAGYPLVPRVA PRYRCTTPQCGRAVFNQDLA
Sbjct  1    MTRDPHSPDCGREGSYRDTITRPLTDLPVAGYPLVPRVAKPRYRCTTPQCGRAVFNQDLA  60

Query  61   NVDQYLVVNQLAHQLIDGSSLIPDADKRWDARRHADMTHHLTSSLKENQS  110
            NVDQYLVVNQLAHQLIDGSSLIPDADKRWDARRHADMTHHLTSSLKENQS
Sbjct  61   NVDQYLVVNQLAHQLIDGSSLIPDADKRWDARRHADMTHHLTSSLKENQS  110


>gi|296163979|ref|ZP_06846608.1| possible transposase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295900666|gb|EFG80043.1| possible transposase [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=345

 Score =  102 bits (255),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 46/59 (78%), Positives = 49/59 (84%), Gaps = 0/59 (0%)

Query  4   DPHSPDCGREGSYRDTITRPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVFNQDLANV  62
           D   PDCGREG YRDT+TRPLTDLPVAGYPLV + A PRYRCTTP CGRAVFNQDL  +
Sbjct  30  DARCPDCGREGRYRDTVTRPLTDLPVAGYPLVLQGALPRYRCTTPACGRAVFNQDLGKL  88


>gi|255325194|ref|ZP_05366300.1| transposase [Corynebacterium tuberculostearicum SK141]
 gi|255297759|gb|EET77070.1| transposase [Corynebacterium tuberculostearicum SK141]
Length=437

 Score = 65.1 bits (157),  Expect = 3e-09, Method: Compositional matrix adjust.
 Identities = 29/56 (52%), Positives = 34/56 (61%), Gaps = 0/56 (0%)

Query  8    PDCGREGSYRDTITRPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVFNQDLANVD  63
            PDCG+ G  RD ITR L DLPV G+P    V  PR+RCTT  C R +F + L   D
Sbjct  46   PDCGQPGMLRDHITRRLVDLPVVGFPTRLHVKVPRFRCTTTSCKRKIFQESLTCAD  101


>gi|319950871|ref|ZP_08024751.1| putative transposase [Dietzia cinnamea P4]
 gi|319435463|gb|EFV90703.1| putative transposase [Dietzia cinnamea P4]
Length=414

 Score = 57.4 bits (137),  Expect = 6e-07, Method: Compositional matrix adjust.
 Identities = 26/64 (41%), Positives = 36/64 (57%), Gaps = 0/64 (0%)

Query  1    VTRDPHSPDCGREGSYRDTITRPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVFNQDLA  60
            VT DP   DCG EG  RD I R +TDLP+ G+P    V  PR+ C   +C   +F Q + 
Sbjct  39   VTLDPVCADCGTEGRLRDHIERKVTDLPIVGHPTRLHVRIPRFTCDNTECATRIFQQRMP  98

Query  61   NVDQ  64
            ++ +
Sbjct  99   DLAE  102


>gi|340795397|ref|YP_004760860.1| transposase for insertion sequence element [Corynebacterium variabile 
DSM 44702]
 gi|340535307|gb|AEK37787.1| transposase for insertion sequence element [Corynebacterium variabile 
DSM 44702]
Length=437

 Score = 55.5 bits (132),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 25/56 (45%), Positives = 30/56 (54%), Gaps = 0/56 (0%)

Query  8    PDCGREGSYRDTITRPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVFNQDLANVD  63
            PDC   G+ RD + R L DLPV G+P    V  PR+ CT P C R +F   L   D
Sbjct  46   PDCAMPGAKRDHVRRRLVDLPVVGFPTRLHVRVPRFTCTNPTCSRKIFQTSLPCAD  101


>gi|340793932|ref|YP_004759395.1| transposase for insertion sequence element [Corynebacterium variabile 
DSM 44702]
 gi|340794327|ref|YP_004759790.1| transposase for insertion sequence element [Corynebacterium variabile 
DSM 44702]
 gi|340533842|gb|AEK36322.1| transposase for insertion sequence element [Corynebacterium variabile 
DSM 44702]
 gi|340534237|gb|AEK36717.1| transposase for insertion sequence element [Corynebacterium variabile 
DSM 44702]
Length=287

 Score = 55.5 bits (132),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 27/63 (43%), Positives = 31/63 (50%), Gaps = 0/63 (0%)

Query  1    VTRDPHSPDCGREGSYRDTITRPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVFNQDLA  60
            V  D   P C   G  RD +TR L DLPV G+P    V  PR+ C    CGR +F   LA
Sbjct  39   VAVDDQCPGCKHPGVLRDHVTRQLVDLPVVGFPTRLHVRVPRFTCANDACGRKIFQASLA  98

Query  61   NVD  63
              D
Sbjct  99   CAD  101


>gi|340795380|ref|YP_004760843.1| transposase for insertion sequence element [Corynebacterium variabile 
DSM 44702]
 gi|340535290|gb|AEK37770.1| transposase for insertion sequence element [Corynebacterium variabile 
DSM 44702]
Length=288

 Score = 55.5 bits (132),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 27/63 (43%), Positives = 31/63 (50%), Gaps = 0/63 (0%)

Query  1    VTRDPHSPDCGREGSYRDTITRPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVFNQDLA  60
            V  D   P C   G  RD +TR L DLPV G+P    V  PR+ C    CGR +F   LA
Sbjct  40   VAVDDQCPGCKHPGVLRDHVTRQLVDLPVVGFPTRLHVRVPRFTCANDACGRKIFQASLA  99

Query  61   NVD  63
              D
Sbjct  100  CAD  102


>gi|340795655|ref|YP_004761118.1| transposase for insertion sequence element [Corynebacterium variabile 
DSM 44702]
 gi|340535565|gb|AEK38045.1| transposase for insertion sequence element [Corynebacterium variabile 
DSM 44702]
Length=437

 Score = 55.1 bits (131),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 25/56 (45%), Positives = 30/56 (54%), Gaps = 0/56 (0%)

Query  8    PDCGREGSYRDTITRPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVFNQDLANVD  63
            PDC   G+ RD + R L DLPV G+P    V  PR+ CT P C R +F   L   D
Sbjct  46   PDCAMPGAKRDHVRRRLVDLPVVGFPTRLHVRVPRFTCTNPTCSRKIFQTSLPCAD  101


>gi|340795735|ref|YP_004761198.1| transposase for insertion sequence element [Corynebacterium variabile 
DSM 44702]
 gi|340535645|gb|AEK38125.1| transposase for insertion sequence element [Corynebacterium variabile 
DSM 44702]
Length=232

 Score = 54.7 bits (130),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 25/56 (45%), Positives = 30/56 (54%), Gaps = 0/56 (0%)

Query  8    PDCGREGSYRDTITRPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVFNQDLANVD  63
            PDC   G+ RD + R L DLPV G+P    V  PR+ CT P C R +F   L   D
Sbjct  46   PDCAMPGAKRDHVRRRLVDLPVVGFPTRLHVRVPRFTCTNPTCSRKIFQTSLPCAD  101


>gi|343926042|ref|ZP_08765555.1| putative transposase [Gordonia alkanivorans NBRC 16433]
 gi|343764046|dbj|GAA12481.1| putative transposase [Gordonia alkanivorans NBRC 16433]
Length=436

 Score = 54.7 bits (130),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 31/55 (57%), Gaps = 0/55 (0%)

Query  8   PDCGREGSYRDTITRPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVFNQDLANV  62
           P CGR G  RD + R + DLP+ G+P    +  PRY C T  C  ++F  DL+ +
Sbjct  46  PTCGRVGRLRDHVDREVADLPIVGHPTRLHLTVPRYTCATSDCATSIFRADLSAI  100


>gi|340793030|ref|YP_004758493.1| transposase for insertion sequence element [Corynebacterium variabile 
DSM 44702]
 gi|340532940|gb|AEK35420.1| transposase for insertion sequence element [Corynebacterium variabile 
DSM 44702]
Length=287

 Score = 54.3 bits (129),  Expect = 5e-06, Method: Compositional matrix adjust.
 Identities = 25/56 (45%), Positives = 30/56 (54%), Gaps = 0/56 (0%)

Query  8    PDCGREGSYRDTITRPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVFNQDLANVD  63
            PDC   G+ RD + R L DLPV G+P    V  PR+ CT P C R +F   L   D
Sbjct  46   PDCAMPGAKRDHVRRRLVDLPVVGFPTRLHVRVPRFTCTNPTCSRKIFQTSLPCAD  101


>gi|16923688|gb|AAL31536.1|AF435074_1 transposase [Corynebacterium glutamicum]
 gi|16923695|gb|AAL31543.1|AF435074_8 transposase [Corynebacterium glutamicum]
 gi|790952|dbj|BAA04250.1| unnamed protein product [Corynebacterium glutamicum]
Length=436

 Score = 53.9 bits (128),  Expect = 8e-06, Method: Compositional matrix adjust.
 Identities = 22/56 (40%), Positives = 32/56 (58%), Gaps = 0/56 (0%)

Query  8    PDCGREGSYRDTITRPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVFNQDLANVD  63
            P+C + G +R+   R L DLP+ G+P    +  PRYRCT P C +  F  +L+  D
Sbjct  46   PECSQPGVFRNHTHRMLIDLPIVGFPTKLFIRLPRYRCTNPTCKQKYFQAELSCAD  101


>gi|319951125|ref|ZP_08024973.1| putative transposase [Dietzia cinnamea P4]
 gi|319435209|gb|EFV90481.1| putative transposase [Dietzia cinnamea P4]
Length=418

 Score = 53.1 bits (126),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 23/59 (39%), Positives = 32/59 (55%), Gaps = 0/59 (0%)

Query  1   VTRDPHSPDCGREGSYRDTITRPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVFNQDL  59
           VT DP   +CG  G  RD + R +TDLP+ G+P    +  PR+ C    CG  +F Q +
Sbjct  20  VTLDPVCAECGMAGRLRDHVQRKVTDLPIVGHPTRLHLRVPRFTCDNDDCGTRIFQQRM  78


>gi|1130607|emb|CAA91438.1| transposase [Corynebacterium glutamicum]
Length=436

 Score = 53.1 bits (126),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 23/54 (43%), Positives = 27/54 (50%), Gaps = 0/54 (0%)

Query  10   CGREGSYRDTITRPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVFNQDLANVD  63
            C   G +RD   R L DLP+ G+P   R+  PRYRCT   C    F   LA  D
Sbjct  48   CAMSGRFRDHAYRTLIDLPIVGFPTKLRIRLPRYRCTNDNCAVKYFQAQLACAD  101


>gi|19553566|ref|NP_601568.1| transposase [Corynebacterium glutamicum ATCC 13032]
 gi|62391210|ref|YP_226612.1| transposase [Corynebacterium glutamicum ATCC 13032]
 gi|21325138|dbj|BAB99760.1| Transposase [Corynebacterium glutamicum ATCC 13032]
 gi|41326550|emb|CAF21032.1| Transposase [Corynebacterium glutamicum ATCC 13032]
Length=436

 Score = 52.8 bits (125),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 22/56 (40%), Positives = 31/56 (56%), Gaps = 0/56 (0%)

Query  8    PDCGREGSYRDTITRPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVFNQDLANVD  63
            P+C + G +R    R L DLP+ G+P    +  PRYRCT P C +  F  +L+  D
Sbjct  46   PECSQPGVFRHHTHRMLIDLPIVGFPTKLFIRLPRYRCTNPTCKQKYFQAELSCAD  101


>gi|57157713|dbj|BAD83820.1| transposase [Corynebacterium glutamicum]
 gi|57157727|dbj|BAD83834.1| transposase [Corynebacterium glutamicum]
 gi|57157730|dbj|BAD83836.1| transposase [Integration vector pCRA732]
 gi|57157732|dbj|BAD83838.1| transposase [Integration vector pCRA732]
Length=436

 Score = 52.8 bits (125),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 22/56 (40%), Positives = 31/56 (56%), Gaps = 0/56 (0%)

Query  8    PDCGREGSYRDTITRPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVFNQDLANVD  63
            P+C + G +R    R L DLP+ G+P    +  PRYRCT P C +  F  +L+  D
Sbjct  46   PECSQPGVFRHHTHRMLIDLPIVGFPTKLFIRLPRYRCTNPTCKQKYFQAELSCAD  101


>gi|1297342|gb|AAA98978.1| transposase [synthetic construct]
 gi|1297344|gb|AAA98980.1| transposase [synthetic construct]
Length=436

 Score = 52.8 bits (125),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 22/56 (40%), Positives = 31/56 (56%), Gaps = 0/56 (0%)

Query  8    PDCGREGSYRDTITRPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVFNQDLANVD  63
            P+C + G +R    R L DLP+ G+P    +  PRYRCT P C +  F  +L+  D
Sbjct  46   PECSQPGVFRHHTHRMLIDLPIVGFPTKLFIRLPRYRCTNPTCKQKYFQAELSCAD  101


>gi|19552292|ref|NP_600294.1| transposase [Corynebacterium glutamicum ATCC 13032]
 gi|19553677|ref|NP_601679.1| putative transposase [Corynebacterium glutamicum ATCC 13032]
 gi|62389488|ref|YP_224890.1| transposase [Corynebacterium glutamicum ATCC 13032]
 7 more sequence titles
 
gi|62389955|ref|YP_225357.1| transposase [Corynebacterium glutamicum ATCC 13032]
 gi|62391317|ref|YP_226719.1| transposase [Corynebacterium glutamicum ATCC 13032]
 gi|21323833|dbj|BAB98459.1| Transposase [Corynebacterium glutamicum ATCC 13032]
 gi|21325250|dbj|BAB99872.1| Transposase [Corynebacterium glutamicum ATCC 13032]
 gi|41324822|emb|CAF19304.1| TRANSPOSASE [Corynebacterium glutamicum ATCC 13032]
 gi|41325291|emb|CAF19771.1| TRANSPOSASE [Corynebacterium glutamicum ATCC 13032]
 gi|41326658|emb|CAF21140.1| Transposase [Corynebacterium glutamicum ATCC 13032]
Length=436

 Score = 52.8 bits (125),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 22/56 (40%), Positives = 31/56 (56%), Gaps = 0/56 (0%)

Query  8    PDCGREGSYRDTITRPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVFNQDLANVD  63
            P+C + G +R    R L DLP+ G+P    +  PRYRCT P C +  F  +L+  D
Sbjct  46   PECSQPGVFRHHTHRMLIDLPIVGFPTKLFIRLPRYRCTNPTCKQKYFQAELSCAD  101


>gi|319951433|ref|ZP_08025244.1| putative transposase [Dietzia cinnamea P4]
 gi|319434902|gb|EFV90211.1| putative transposase [Dietzia cinnamea P4]
Length=414

 Score = 52.0 bits (123),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 23/59 (39%), Positives = 32/59 (55%), Gaps = 0/59 (0%)

Query  1   VTRDPHSPDCGREGSYRDTITRPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVFNQDL  59
           VT DP   +CG  G  RD + R +TDLP+ G+P    V  PR+ C   +C   +F Q +
Sbjct  39  VTLDPVCAECGMAGRLRDHVQRKVTDLPIVGHPTRLHVRVPRFTCDNIECETRIFQQRM  97


>gi|256832661|ref|YP_003161388.1| transposase IS204/IS1001/IS1096/IS1165 family protein [Jonesia 
denitrificans DSM 20603]
 gi|256686192|gb|ACV09085.1| transposase IS204/IS1001/IS1096/IS1165 family protein [Jonesia 
denitrificans DSM 20603]
Length=438

 Score = 51.6 bits (122),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 24/56 (43%), Positives = 30/56 (54%), Gaps = 0/56 (0%)

Query  8    PDCGREGSYRDTITRPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVFNQDLANVD  63
            P+C R G  RD + R L DLPV G+P    V  PR+ CT   C R +F   L+  D
Sbjct  47   PECSRPGKLRDHVLRRLVDLPVVGFPTRLHVRVPRFTCTNQPCPRKIFQACLSCAD  102


>gi|262200083|ref|YP_003271291.1| transposase IS204/IS1001/IS1096/IS1165 family protein [Gordonia 
bronchialis DSM 43247]
 gi|262200740|ref|YP_003271948.1| transposase IS204/IS1001/IS1096/IS1165 family protein [Gordonia 
bronchialis DSM 43247]
 gi|262204397|ref|YP_003275605.1| transposase IS204/IS1001/IS1096/IS1165 family protein [Gordonia 
bronchialis DSM 43247]
 gi|262083430|gb|ACY19398.1| transposase IS204/IS1001/IS1096/IS1165 family protein [Gordonia 
bronchialis DSM 43247]
 gi|262084087|gb|ACY20055.1| transposase IS204/IS1001/IS1096/IS1165 family protein [Gordonia 
bronchialis DSM 43247]
 gi|262087744|gb|ACY23712.1| transposase IS204/IS1001/IS1096/IS1165 family protein [Gordonia 
bronchialis DSM 43247]
Length=436

 Score = 51.2 bits (121),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 21/55 (39%), Positives = 30/55 (55%), Gaps = 0/55 (0%)

Query  8   PDCGREGSYRDTITRPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVFNQDLANV  62
           P CG  G  RD I R + DLP+ G+P    ++ PRY C  P C   +F  D++ +
Sbjct  46  PGCGLPGRLRDHIDREVADLPIVGHPTRLHISVPRYLCDNPDCPTTIFRADISTI  100


>gi|259506126|ref|ZP_05749028.1| transposase [Corynebacterium efficiens YS-314]
 gi|259166300|gb|EEW50854.1| transposase [Corynebacterium efficiens YS-314]
Length=272

 Score = 51.2 bits (121),  Expect = 5e-05, Method: Compositional matrix adjust.
 Identities = 24/56 (43%), Positives = 27/56 (49%), Gaps = 0/56 (0%)

Query  8   PDCGREGSYRDTITRPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVFNQDLANVD  63
           PDCG  G  R    R L DLPV G+P    V  PR+ C  P C R +F   L   D
Sbjct  41  PDCGHPGKLRAHTLRRLVDLPVVGFPTRLHVRVPRFLCADPSCPRKIFQASLTCTD  96


>gi|25026812|ref|NP_736866.1| transposase [Corynebacterium efficiens YS-314]
 gi|23492091|dbj|BAC17066.1| transposase [Corynebacterium efficiens YS-314]
Length=289

 Score = 50.8 bits (120),  Expect = 6e-05, Method: Compositional matrix adjust.
 Identities = 24/56 (43%), Positives = 27/56 (49%), Gaps = 0/56 (0%)

Query  8    PDCGREGSYRDTITRPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVFNQDLANVD  63
            PDCG  G  R    R L DLPV G+P    V  PR+ C  P C R +F   L   D
Sbjct  58   PDCGHPGKLRAHTLRRLVDLPVVGFPTRLHVRVPRFLCADPSCPRKIFQASLTCTD  113


>gi|343925704|ref|ZP_08765220.1| putative transposase [Gordonia alkanivorans NBRC 16433]
 gi|343764384|dbj|GAA12146.1| putative transposase [Gordonia alkanivorans NBRC 16433]
Length=435

 Score = 50.8 bits (120),  Expect = 6e-05, Method: Compositional matrix adjust.
 Identities = 20/55 (37%), Positives = 30/55 (55%), Gaps = 0/55 (0%)

Query  8   PDCGREGSYRDTITRPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVFNQDLANV  62
           P C R G  RD + R + DLP+ G+P    +  PRY C    CG+ +F  D++ +
Sbjct  45  PRCERAGRLRDHVDREVADLPIVGHPTRLHLRVPRYACENGACGQGIFRADISAI  99


>gi|296163935|ref|ZP_06846571.1| transposase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295900716|gb|EFG80086.1| transposase [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=208

 Score = 49.3 bits (116),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 26/53 (50%), Positives = 33/53 (63%), Gaps = 3/53 (5%)

Query  6   HSPDCGREGSYRDTITRPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVFNQD  58
           H P C R+ + RDT+ R +TD+PV G+PL  RV  PRYRC    C R VF  +
Sbjct  33  HCPGCRRDVN-RDTVIRNVTDVPVVGHPLRLRV--PRYRCVDTACEREVFAHN  82


>gi|77454838|ref|YP_345706.1| putative transposase [Rhodococcus erythropolis PR4]
 gi|77019838|dbj|BAE46214.1| putative transposase [Rhodococcus erythropolis PR4]
Length=437

 Score = 47.8 bits (112),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 22/58 (38%), Positives = 30/58 (52%), Gaps = 0/58 (0%)

Query  2   TRDPHSPDCGREGSYRDTITRPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVFNQDL  59
           T DP   +CG  G  RD I R +TDLP+ G+P    V  PR+     +C   +F Q +
Sbjct  40  TLDPVCAECGAAGRLRDHIQRRVTDLPIVGHPTRLHVRVPRFTWDNTECATRIFQQRM  97


>gi|340795379|ref|YP_004760842.1| transposase for insertion sequence element [Corynebacterium variabile 
DSM 44702]
 gi|340535289|gb|AEK37769.1| transposase for insertion sequence element [Corynebacterium variabile 
DSM 44702]
Length=443

 Score = 47.4 bits (111),  Expect = 8e-04, Method: Compositional matrix adjust.
 Identities = 24/59 (41%), Positives = 29/59 (50%), Gaps = 0/59 (0%)

Query  1    VTRDPHSPDCGREGSYRDTITRPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVFNQDL  59
            VT D   P CG     RD I R LTDLP+AG+P +  V  PR  C    C   +F   +
Sbjct  46   VTVDLSCPHCGHACRVRDHIERRLTDLPIAGHPSLLHVRVPRLVCVNDDCEVTIFRASI  104


>gi|340793909|ref|YP_004759372.1| transposase for insertion sequence element [Corynebacterium variabile 
DSM 44702]
 gi|340794321|ref|YP_004759784.1| transposase for insertion sequence element [Corynebacterium variabile 
DSM 44702]
 gi|340533819|gb|AEK36299.1| transposase for insertion sequence element [Corynebacterium variabile 
DSM 44702]
 gi|340534231|gb|AEK36711.1| transposase for insertion sequence element [Corynebacterium variabile 
DSM 44702]
Length=447

 Score = 47.4 bits (111),  Expect = 8e-04, Method: Compositional matrix adjust.
 Identities = 24/59 (41%), Positives = 29/59 (50%), Gaps = 0/59 (0%)

Query  1    VTRDPHSPDCGREGSYRDTITRPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVFNQDL  59
            VT D   P CG     RD I R LTDLP+AG+P +  V  PR  C    C   +F   +
Sbjct  50   VTVDLSCPHCGHACRVRDHIERRLTDLPIAGHPSLLHVRVPRLVCVNDDCEVTIFRASI  108


>gi|340793780|ref|YP_004759243.1| transposase for insertion sequence element [Corynebacterium variabile 
DSM 44702]
 gi|340793940|ref|YP_004759403.1| transposase for insertion sequence element [Corynebacterium variabile 
DSM 44702]
 gi|340794252|ref|YP_004759715.1| transposase for insertion sequence element [Corynebacterium variabile 
DSM 44702]
 9 more sequence titles
 
gi|340794316|ref|YP_004759779.1| transposase for insertion sequence element [Corynebacterium variabile 
DSM 44702]
 gi|340794337|ref|YP_004759800.1| transposase for insertion sequence element [Corynebacterium variabile 
DSM 44702]
 gi|340795831|ref|YP_004761294.1| transposase for insertion sequence element [Corynebacterium variabile 
DSM 44702]
 gi|340533690|gb|AEK36170.1| transposase for insertion sequence element [Corynebacterium variabile 
DSM 44702]
 gi|340533850|gb|AEK36330.1| transposase for insertion sequence element [Corynebacterium variabile 
DSM 44702]
 gi|340534162|gb|AEK36642.1| transposase for insertion sequence element [Corynebacterium variabile 
DSM 44702]
 gi|340534226|gb|AEK36706.1| transposase for insertion sequence element [Corynebacterium variabile 
DSM 44702]
 gi|340534247|gb|AEK36727.1| transposase for insertion sequence element [Corynebacterium variabile 
DSM 44702]
 gi|340535741|gb|AEK38221.1| transposase for insertion sequence element [Corynebacterium variabile 
DSM 44702]
Length=194

 Score = 47.0 bits (110),  Expect = 9e-04, Method: Compositional matrix adjust.
 Identities = 23/59 (39%), Positives = 31/59 (53%), Gaps = 0/59 (0%)

Query  1    VTRDPHSPDCGREGSYRDTITRPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVFNQDL  59
            V  D + P CG     RD + R LTDLP+AG+P +  V  PR  CT+  C   +F   +
Sbjct  63   VIVDLNCPGCGHACRVRDHVERRLTDLPIAGHPSLLHVRVPRLFCTSDDCEVTIFRASI  121


>gi|340793934|ref|YP_004759397.1| transposase for insertion sequence element [Corynebacterium variabile 
DSM 44702]
 gi|340533844|gb|AEK36324.1| transposase for insertion sequence element [Corynebacterium variabile 
DSM 44702]
Length=191

 Score = 47.0 bits (110),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 32/88 (37%), Positives = 40/88 (46%), Gaps = 7/88 (7%)

Query  1    VTRDPHSPDCGREGSYRDTITRPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVF-----  55
            VT D   P CG     RD + R LTDLPVAG+P +  V +PR  C    C   VF     
Sbjct  59   VTVDSTCPHCGHACRVRDHVERRLTDLPVAGHPSLLHVRTPRLICGNDDCPVTVFWAPIP  118

Query  56   --NQDLANVDQYLVVNQLAHQLIDGSSL  81
               +D  +V   +    L    IDG S+
Sbjct  119  QAAEDRQSVTHRVTRWILQRMAIDGMSV  146


>gi|340794642|ref|YP_004760105.1| transposase for insertion sequence element [Corynebacterium variabile 
DSM 44702]
 gi|340534552|gb|AEK37032.1| transposase for insertion sequence element [Corynebacterium variabile 
DSM 44702]
Length=456

 Score = 46.2 bits (108),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 22/59 (38%), Positives = 30/59 (51%), Gaps = 0/59 (0%)

Query  1    VTRDPHSPDCGREGSYRDTITRPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVFNQDL  59
            V+ D + P CG +   RD + R LTDLP+ G+P V  V  PR  C    C   +F   +
Sbjct  59   VSFDLNCPGCGHDCQVRDHVERRLTDLPIVGHPSVLHVRVPRLACGNDDCEVTIFRASI  117


>gi|340794341|ref|YP_004759804.1| transposase for insertion sequence element [Corynebacterium variabile 
DSM 44702]
 gi|340534251|gb|AEK36731.1| transposase for insertion sequence element [Corynebacterium variabile 
DSM 44702]
Length=457

 Score = 45.8 bits (107),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 30/55 (55%), Gaps = 0/55 (0%)

Query  1    VTRDPHSPDCGREGSYRDTITRPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVF  55
            VT     P CG+    RD + R LTDLP+AG+P +  V +PR  C    C  ++F
Sbjct  59   VTVTTACPHCGQVSRVRDHVDRRLTDLPIAGHPSILHVRTPRLTCGNEDCPVSIF  113


>gi|319951435|ref|ZP_08025245.1| putative transposase [Dietzia cinnamea P4]
 gi|319434872|gb|EFV90182.1| putative transposase [Dietzia cinnamea P4]
Length=112

 Score = 45.8 bits (107),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 0/50 (0%)

Query  1   VTRDPHSPDCGREGSYRDTITRPLTDLPVAGYPLVPRVASPRYRCTTPQC  50
           VT DP   +CG  G  RD + R +TDLP+ G+P    V  PR+ C   +C
Sbjct  39  VTLDPVCAECGMAGRLRDHVQRKVTDLPIVGHPTRLHVRVPRFTCDNIEC  88


>gi|227540983|ref|ZP_03971032.1| possible transposase [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227183243|gb|EEI64215.1| possible transposase [Corynebacterium glucuronolyticum ATCC 51866]
Length=179

 Score = 45.8 bits (107),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 25/61 (41%), Positives = 29/61 (48%), Gaps = 2/61 (3%)

Query  1   VTRDP--HSPDCGREGSYRDTITRPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVFNQD  58
           V  DP    P C + G  RD + R   DLPV G+P   RV  PRY C    C R +F   
Sbjct  37  VAVDPINECPVCTQPGVKRDHVIRERVDLPVVGFPTRLRVRLPRYLCVNQACPRRIFQAG  96

Query  59  L  59
           L
Sbjct  97  L  97


>gi|296119403|ref|ZP_06837964.1| transposase [Corynebacterium ammoniagenes DSM 20306]
 gi|295967603|gb|EFG80867.1| transposase [Corynebacterium ammoniagenes DSM 20306]
Length=112

 Score = 42.7 bits (99),  Expect = 0.019, Method: Compositional matrix adjust.
 Identities = 20/53 (38%), Positives = 26/53 (50%), Gaps = 0/53 (0%)

Query  8    PDCGREGSYRDTITRPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVFNQDLA  60
            P C   G +RD + R L +LP+  +P    V  PRYRCT   C    +   LA
Sbjct  54   PTCDNTGIFRDHVLRTLMNLPIVEFPTRLHVRLPRYRCTMRGCRVKFYQAQLA  106


>gi|309813296|ref|ZP_07707009.1| transposase [Dermacoccus sp. Ellin185]
 gi|308432741|gb|EFP56660.1| transposase [Dermacoccus sp. Ellin185]
Length=463

 Score = 42.0 bits (97),  Expect = 0.030, Method: Compositional matrix adjust.
 Identities = 24/49 (49%), Positives = 28/49 (58%), Gaps = 3/49 (6%)

Query  10   CGREGSYRDTITRPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVFNQD  58
            CG EG+ RDT+ R L   P+   P V  VA  RYRCT   CG  V+ QD
Sbjct  77   CGAEGAARDTVIRRLAHEPLGWRPTVLEVAVRRYRCT--GCGH-VWRQD  122


>gi|46202882|ref|ZP_00208696.1| COG3464: Transposase and inactivated derivatives [Magnetospirillum 
magnetotacticum MS-1]
Length=78

 Score = 41.6 bits (96),  Expect = 0.041, Method: Compositional matrix adjust.
 Identities = 26/75 (35%), Positives = 38/75 (51%), Gaps = 8/75 (10%)

Query  21  TRPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVFNQDL------ANVDQYLVVNQLAHQ  74
           TR L+DLPVAG  +V  V+  R+RC  P+C   VF + L      A   +   +  L H 
Sbjct  6   TRTLSDLPVAGRRVVITVSVRRFRCIEPKCRTKVFAERLEPDLATAYARRTGRLETLVHH  65

Query  75  LIDGSSLIPDADKRW  89
           L  G +L+   ++R 
Sbjct  66  L--GLALVAGRERRL  78


>gi|46202623|ref|ZP_00208592.1| COG3464: Transposase and inactivated derivatives [Magnetospirillum 
magnetotacticum MS-1]
Length=469

 Score = 41.2 bits (95),  Expect = 0.057, Method: Compositional matrix adjust.
 Identities = 19/39 (49%), Positives = 25/39 (65%), Gaps = 0/39 (0%)

Query  21  TRPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVFNQDL  59
           TR L+DLPVAG  +V  V+  R+RC  P+C   VF + L
Sbjct  6   TRTLSDLPVAGRRVVITVSVRRFRCIEPKCRTKVFAERL  44


>gi|227875640|ref|ZP_03993778.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243]
 gi|227843770|gb|EEJ53941.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243]
Length=190

 Score = 40.4 bits (93),  Expect = 0.082, Method: Compositional matrix adjust.
 Identities = 20/62 (33%), Positives = 32/62 (52%), Gaps = 3/62 (4%)

Query  3    RDPHSPDCGREGSYRDTITRPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVFNQDLANV  62
            ++     CG +G  R T +R +   P   YP V R+  PR+ C T  CGR V+ Q+  ++
Sbjct  83   KNEFCQWCGAQGEARSTASRDINHFPCGSYPTVLRIRIPRWGCKT--CGR-VWRQNTEHI  139

Query  63   DQ  64
             +
Sbjct  140  AK  141


>gi|315606220|ref|ZP_07881245.1| transposase [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315312072|gb|EFU60164.1| transposase [Actinomyces sp. oral taxon 180 str. F0310]
Length=436

 Score = 40.4 bits (93),  Expect = 0.085, Method: Compositional matrix adjust.
 Identities = 22/60 (37%), Positives = 32/60 (54%), Gaps = 3/60 (5%)

Query  1   VTRDPHSPDCGREGSYRDTITRPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVFNQDLA  60
           V  D     CG EG  RDT+ R L  +P   +P +  V+  RYRC  P+C   V+ Q+++
Sbjct  41  VGEDRWCRQCGGEGVVRDTVVRRLAHVPYGWHPTMLHVSVRRYRC--PECAH-VWRQNMS  97


>gi|269976631|ref|ZP_06183611.1| transposase [Mobiluncus mulieris 28-1]
 gi|269935170|gb|EEZ91724.1| transposase [Mobiluncus mulieris 28-1]
Length=292

 Score = 40.0 bits (92),  Expect = 0.10, Method: Compositional matrix adjust.
 Identities = 20/55 (37%), Positives = 30/55 (55%), Gaps = 3/55 (5%)

Query  10   CGREGSYRDTITRPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVFNQDLANVDQ  64
            CG +G  R T +R +   P   YP V R+  PR+ C T  CGR V+ Q+  ++ +
Sbjct  55   CGAQGEARGTASRDINHFPCGSYPTVLRIRIPRWGCKT--CGR-VWRQNTEHIAK  106


>gi|306818349|ref|ZP_07452075.1| ISL3 family transposase [Mobiluncus mulieris ATCC 35239]
 gi|304648858|gb|EFM46157.1| ISL3 family transposase [Mobiluncus mulieris ATCC 35239]
Length=332

 Score = 40.0 bits (92),  Expect = 0.11, Method: Composition-based stats.
 Identities = 20/53 (38%), Positives = 29/53 (55%), Gaps = 3/53 (5%)

Query  10   CGREGSYRDTITRPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVFNQDLANV  62
            CG +G  R T +R +   P   YP V R+  PR+ C T  CGR V+ Q+  ++
Sbjct  95   CGAQGEARGTASRDINHFPCGSYPTVLRIRIPRWGCKT--CGR-VWRQNTEHI  144


>gi|308178789|ref|YP_003918195.1| transposase of ISAar42, ISL3 family [Arthrobacter arilaitensis 
Re117]
 gi|307746252|emb|CBT77224.1| transposase of ISAar42, ISL3 family [Arthrobacter arilaitensis 
Re117]
Length=433

 Score = 40.0 bits (92),  Expect = 0.12, Method: Compositional matrix adjust.
 Identities = 20/47 (43%), Positives = 24/47 (52%), Gaps = 0/47 (0%)

Query  1   VTRDPHSPDCGREGSYRDTITRPLTDLPVAGYPLVPRVASPRYRCTT  47
           V  DP    CG EG+ RDT+TRPL   P    P    +   RYRC +
Sbjct  41  VEDDPWCRKCGAEGAPRDTVTRPLAHEPFGHRPTTLLIRVRRYRCVS  87


>gi|297625438|ref|YP_003687201.1| transposase [Propionibacterium freudenreichii subsp. shermanii 
CIRM-BIA1]
 gi|296921203|emb|CBL55752.1| Transposase [Propionibacterium freudenreichii subsp. shermanii 
CIRM-BIA1]
Length=435

 Score = 39.3 bits (90),  Expect = 0.17, Method: Compositional matrix adjust.
 Identities = 24/49 (49%), Positives = 27/49 (56%), Gaps = 3/49 (6%)

Query  10  CGREGSYRDTITRPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVFNQD  58
           CGREGS RD++TR L   P    P    V   RYRCT   C R V+ QD
Sbjct  50  CGREGSPRDSVTRELAHAPQGWRPTTLVVTVRRYRCT--GCTR-VWRQD  95


>gi|150377550|ref|YP_001314145.1| transposase IS204/IS1001/IS1096/IS1165 family protein [Sinorhizobium 
medicae WSM419]
 gi|150032097|gb|ABR64212.1| transposase IS204/IS1001/IS1096/IS1165 family protein [Sinorhizobium 
medicae WSM419]
Length=536

 Score = 39.3 bits (90),  Expect = 0.18, Method: Compositional matrix adjust.
 Identities = 20/56 (36%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query  8   PDCGREGSYRDTIT-RPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVFNQDLANV  62
           PDCGR   +R   + R L DLPV G  +  ++   R+RC   +C R  F   L  +
Sbjct  39  PDCGRRTRHRHGWSNRSLQDLPVQGKTVTVKLRLSRWRCAHQKCERQTFTDRLPTI  94


>gi|256824105|ref|YP_003148065.1| transposase family protein [Kytococcus sedentarius DSM 20547]
 gi|256824106|ref|YP_003148066.1| transposase family protein [Kytococcus sedentarius DSM 20547]
 gi|256825529|ref|YP_003149489.1| transposase family protein [Kytococcus sedentarius DSM 20547]
 7 more sequence titles
 
gi|256825939|ref|YP_003149899.1| transposase family protein [Kytococcus sedentarius DSM 20547]
 gi|256826192|ref|YP_003150152.1| transposase family protein [Kytococcus sedentarius DSM 20547]
 gi|256687498|gb|ACV05300.1| transposase family protein [Kytococcus sedentarius DSM 20547]
 gi|256687499|gb|ACV05301.1| transposase family protein [Kytococcus sedentarius DSM 20547]
 gi|256688922|gb|ACV06724.1| transposase family protein [Kytococcus sedentarius DSM 20547]
 gi|256689332|gb|ACV07134.1| transposase family protein [Kytococcus sedentarius DSM 20547]
 gi|256689585|gb|ACV07387.1| transposase family protein [Kytococcus sedentarius DSM 20547]
Length=435

 Score = 38.9 bits (89),  Expect = 0.23, Method: Compositional matrix adjust.
 Identities = 25/59 (43%), Positives = 28/59 (48%), Gaps = 3/59 (5%)

Query  1   VTRDPHSPDCGREGSYRDTITRPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVFNQDL  59
           V  DP    CG EG  RDT+TRPL   P    P    V   RYRC    C R  + QD+
Sbjct  41  VEDDPRCRKCGVEGVPRDTVTRPLAHEPFGHRPTTLLVRVRRYRCG--HC-RRTWRQDM  96


>gi|315606222|ref|ZP_07881246.1| transposase [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315312070|gb|EFU60163.1| transposase [Actinomyces sp. oral taxon 180 str. F0310]
Length=434

 Score = 38.9 bits (89),  Expect = 0.23, Method: Compositional matrix adjust.
 Identities = 23/49 (47%), Positives = 26/49 (54%), Gaps = 3/49 (6%)

Query  10  CGREGSYRDTITRPLTDLPVAGYPLVPRVASPRYRCTTPQCGRAVFNQD  58
           CG EGS  D +TR L   P    P    +A  RYRCT   CGR V+ QD
Sbjct  50  CGCEGSVHDVVTRRLAHEPFGWRPTTLLIAVRRYRCT--GCGR-VWRQD  95



Lambda     K      H
   0.319    0.134    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 129022162688




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40