BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0855

Length=359
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15607995|ref|NP_215370.1|  fatty-acid-CoA racemase [Mycobacter...   724    0.0   
gi|340625869|ref|YP_004744321.1|  putative fatty-acid-CoA racemas...   722    0.0   
gi|289756941|ref|ZP_06516319.1|  fatty-acid-CoA racemase far [Myc...   722    0.0   
gi|306796626|ref|ZP_07434928.1|  fatty-acid-CoA racemase far [Myc...   707    0.0   
gi|296169610|ref|ZP_06851230.1|  fatty-acid-CoA racemase [Mycobac...   638    0.0   
gi|183984649|ref|YP_001852940.1|  fatty-acid-CoA racemase Far [My...   634    6e-180
gi|254818312|ref|ZP_05223313.1|  Far [Mycobacterium intracellular...   622    4e-176
gi|118465733|ref|YP_880236.1|  alpha-methylacyl-CoA racemase [Myc...   615    3e-174
gi|41406883|ref|NP_959719.1|  Far [Mycobacterium avium subsp. par...   615    4e-174
gi|254773862|ref|ZP_05215378.1|  Far [Mycobacterium avium subsp. ...   613    2e-173
gi|342860458|ref|ZP_08717109.1|  Far [Mycobacterium colombiense C...   609    2e-172
gi|240171440|ref|ZP_04750099.1|  putative fatty-acid-CoA racemase...   597    7e-169
gi|118471931|ref|YP_889967.1|  alpha-methylacyl-CoA racemase [Myc...   566    2e-159
gi|169627944|ref|YP_001701593.1|  fatty-acid-CoA racemase Far [My...   517    1e-144
gi|262203639|ref|YP_003274847.1|  alpha-methylacyl-CoA racemase [...   414    1e-113
gi|343927798|ref|ZP_08767266.1|  alpha-methylacyl-CoA racemase [G...   414    1e-113
gi|257056362|ref|YP_003134194.1|  putative acyl-CoA transferase/c...   412    4e-113
gi|302526303|ref|ZP_07278645.1|  L-carnitine dehydratase/bile aci...   411    9e-113
gi|296270062|ref|YP_003652694.1|  L-carnitine dehydratase/bile ac...   405    5e-111
gi|120405530|ref|YP_955359.1|  L-carnitine dehydratase/bile acid-...   401    1e-109
gi|15840584|ref|NP_335621.1|  fatty acid-CoA racemase [Mycobacter...   400    1e-109
gi|240172481|ref|ZP_04751140.1|  Mcr protein [Mycobacterium kansa...   400    2e-109
gi|15608283|ref|NP_215659.1|  alpha-methylacyl-CoA racemase [Myco...   400    3e-109
gi|289555070|ref|ZP_06444280.1|  alpha-methylacyl-CoA racemase mc...   399    3e-109
gi|312199516|ref|YP_004019577.1|  L-carnitine dehydratase/bile ac...   399    3e-109
gi|325003304|ref|ZP_08124416.1|  predicted acyl-CoA transferase/c...   399    4e-109
gi|111222800|ref|YP_713594.1|  alpha-methylacyl-CoA racemase [Fra...   398    6e-109
gi|312197060|ref|YP_004017121.1|  L-carnitine dehydratase/bile ac...   398    6e-109
gi|118473757|ref|YP_889430.1|  alpha-methylacyl-CoA racemase [Myc...   398    6e-109
gi|41408736|ref|NP_961572.1|  Mcr [Mycobacterium avium subsp. par...   398    8e-109
gi|340626158|ref|YP_004744610.1|  putative alpha-methylacyl-CoA r...   398    8e-109
gi|118462940|ref|YP_880529.1|  Mcr protein [Mycobacterium avium 1...   398    9e-109
gi|336458775|gb|EGO37735.1|  putative acyl-CoA transferase/carnit...   397    1e-108
gi|226365035|ref|YP_002782818.1|  alpha-methylacyl-CoA racemase [...   395    6e-108
gi|342861757|ref|ZP_08718403.1|  Mcr [Mycobacterium colombiense C...   395    7e-108
gi|229492996|ref|ZP_04386791.1|  alpha-methylacyl-CoA racemase [R...   395    7e-108
gi|226304922|ref|YP_002764880.1|  alpha-methylacyl-CoA racemase [...   394    1e-107
gi|111022523|ref|YP_705495.1|  alpha-methylacyl-CoA racemase [Rho...   394    1e-107
gi|226349943|ref|YP_002777056.1|  alpha-methylacyl-CoA racemase [...   392    6e-107
gi|54312031|dbj|BAD66657.1|  alpha-Methylacyl-CoA racemase [Mycob...   391    9e-107
gi|254820698|ref|ZP_05225699.1|  Mcr [Mycobacterium intracellular...   390    1e-106
gi|326384845|ref|ZP_08206520.1|  alpha-methylacyl-CoA racemase [G...   388    7e-106
gi|288924215|ref|ZP_06418249.1|  L-carnitine dehydratase/bile aci...   385    4e-105
gi|296170032|ref|ZP_06851636.1|  alpha-methylacyl-CoA racemase [M...   385    5e-105
gi|226308378|ref|YP_002768338.1|  alpha-methylacyl-CoA racemase [...   385    6e-105
gi|312141267|ref|YP_004008603.1|  alpha-methylacyl-CoA racemase [...   384    9e-105
gi|145222714|ref|YP_001133392.1|  L-carnitine dehydratase/bile ac...   380    2e-103
gi|325673900|ref|ZP_08153590.1|  fatty acid-CoA racemase [Rhodoco...   379    4e-103
gi|226361774|ref|YP_002779552.1|  alpha-methylacyl-CoA racemase [...   379    5e-103
gi|108801033|ref|YP_641230.1|  L-carnitine dehydratase/bile acid-...   378    6e-103


>gi|15607995|ref|NP_215370.1| fatty-acid-CoA racemase [Mycobacterium tuberculosis H37Rv]
 gi|15840268|ref|NP_335305.1| fatty acid-CoA racemase [Mycobacterium tuberculosis CDC1551]
 gi|31792043|ref|NP_854536.1| fatty-acid-CoA racemase [Mycobacterium bovis AF2122/97]
 76 more sequence titles
 Length=359

 Score =  724 bits (1868),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 358/359 (99%), Positives = 359/359 (100%), Gaps = 0/359 (0%)

Query  1    VTTGGPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRI  60
            +TTGGPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRI
Sbjct  1    MTTGGPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRI  60

Query  61   VDLDVKTQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDG  120
            VDLDVKTQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDG
Sbjct  61   VDLDVKTQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDG  120

Query  121  PLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERS  180
            PLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERS
Sbjct  121  PLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERS  180

Query  181  GVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVG  240
            GVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVG
Sbjct  181  GVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVG  240

Query  241  AIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACV  300
            AIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACV
Sbjct  241  AIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACV  300

Query  301  TPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEINW  359
            TPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEINW
Sbjct  301  TPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEINW  359


>gi|340625869|ref|YP_004744321.1| putative fatty-acid-CoA racemase FAR [Mycobacterium canettii 
CIPT 140010059]
 gi|340004059|emb|CCC43195.1| putative fatty-acid-CoA racemase FAR [Mycobacterium canettii 
CIPT 140010059]
Length=359

 Score =  722 bits (1864),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 357/359 (99%), Positives = 358/359 (99%), Gaps = 0/359 (0%)

Query  1    VTTGGPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRI  60
            +TTGGPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRI
Sbjct  1    MTTGGPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRI  60

Query  61   VDLDVKTQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDG  120
            VDLDVKTQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDG
Sbjct  61   VDLDVKTQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDG  120

Query  121  PLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERS  180
            PLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERS
Sbjct  121  PLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERS  180

Query  181  GVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVG  240
            GVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVG
Sbjct  181  GVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVG  240

Query  241  AIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACV  300
            AIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACV
Sbjct  241  AIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACV  300

Query  301  TPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEINW  359
            TPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAA TPIDEINW
Sbjct  301  TPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAATTPIDEINW  359


>gi|289756941|ref|ZP_06516319.1| fatty-acid-CoA racemase far [Mycobacterium tuberculosis T85]
 gi|289712505|gb|EFD76517.1| fatty-acid-CoA racemase far [Mycobacterium tuberculosis T85]
 gi|326904925|gb|EGE51858.1| fatty-acid-CoA racemase far [Mycobacterium tuberculosis W-148]
 gi|339293869|gb|AEJ45980.1| fatty-acid-CoA racemase far [Mycobacterium tuberculosis CCDC5079]
 gi|339297510|gb|AEJ49620.1| fatty-acid-CoA racemase far [Mycobacterium tuberculosis CCDC5180]
Length=359

 Score =  722 bits (1864),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 357/359 (99%), Positives = 358/359 (99%), Gaps = 0/359 (0%)

Query  1    VTTGGPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRI  60
            +TTGGPLAGVKVIELGGIGPGPH GMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRI
Sbjct  1    MTTGGPLAGVKVIELGGIGPGPHVGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRI  60

Query  61   VDLDVKTQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDG  120
            VDLDVKTQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDG
Sbjct  61   VDLDVKTQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDG  120

Query  121  PLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERS  180
            PLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERS
Sbjct  121  PLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERS  180

Query  181  GVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVG  240
            GVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVG
Sbjct  181  GVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVG  240

Query  241  AIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACV  300
            AIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACV
Sbjct  241  AIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACV  300

Query  301  TPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEINW  359
            TPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEINW
Sbjct  301  TPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEINW  359


>gi|306796626|ref|ZP_07434928.1| fatty-acid-CoA racemase far [Mycobacterium tuberculosis SUMu006]
 gi|308342960|gb|EFP31811.1| fatty-acid-CoA racemase far [Mycobacterium tuberculosis SUMu006]
Length=350

 Score =  707 bits (1825),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 349/350 (99%), Positives = 350/350 (100%), Gaps = 0/350 (0%)

Query  10   VKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIVDLDVKTQP  69
            +KVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIVDLDVKTQP
Sbjct  1    MKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIVDLDVKTQP  60

Query  70   QAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPLASTAGHD  129
            QAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPLASTAGHD
Sbjct  61   QAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPLASTAGHD  120

Query  130  INYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGVGQVVDAA  189
            INYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGVGQVVDAA
Sbjct  121  INYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGVGQVVDAA  180

Query  190  MVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAIEPQFFAA  249
            MVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAIEPQFFAA
Sbjct  181  MVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAIEPQFFAA  240

Query  250  LLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTPVLAWSEA  309
            LLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTPVLAWSEA
Sbjct  241  LLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTPVLAWSEA  300

Query  310  ANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEINW  359
            ANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEINW
Sbjct  301  ANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEINW  350


>gi|296169610|ref|ZP_06851230.1| fatty-acid-CoA racemase [Mycobacterium parascrofulaceum ATCC 
BAA-614]
 gi|295895876|gb|EFG75571.1| fatty-acid-CoA racemase [Mycobacterium parascrofulaceum ATCC 
BAA-614]
Length=359

 Score =  638 bits (1645),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 309/356 (87%), Positives = 332/356 (94%), Gaps = 0/356 (0%)

Query  4    GGPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIVDL  63
            GGPLAGVKVIELGGIGPGPHAGM+LADLGADVVRVRRPGGL MP EDRDLLHRGKRIVDL
Sbjct  4    GGPLAGVKVIELGGIGPGPHAGMMLADLGADVVRVRRPGGLVMPPEDRDLLHRGKRIVDL  63

Query  64   DVKTQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPLA  123
            DVKTQPQA+L LAA+ADVLLDCFRPGTCERLGIGPD+CA+VNPRLIFARITGWGQDGPLA
Sbjct  64   DVKTQPQALLGLAARADVLLDCFRPGTCERLGIGPDECAAVNPRLIFARITGWGQDGPLA  123

Query  124  STAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGVG  183
             TAGHDINYLSQTGAL+A GYADRPPMPPLNLVADFGGGSMLVLLGIV ALYERERSG G
Sbjct  124  RTAGHDINYLSQTGALSALGYADRPPMPPLNLVADFGGGSMLVLLGIVAALYERERSGAG  183

Query  184  QVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAIE  243
            QV+DAAMVDGVS+LAQMMWTMK  G+LRD+RESFLLDGGAPFYRCYET+DGKYMAVGAIE
Sbjct  184  QVIDAAMVDGVSLLAQMMWTMKSTGALRDRRESFLLDGGAPFYRCYETADGKYMAVGAIE  243

Query  244  PQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTPV  303
            PQFFAALL+GLGLSA +VP QLDVA YP+MY++FA+RFASRTRDEWT  FAGTDACVTPV
Sbjct  244  PQFFAALLTGLGLSAGEVPGQLDVASYPRMYEVFAQRFASRTRDEWTTTFAGTDACVTPV  303

Query  304  LAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEINW  359
            L W+EAA ++HL+ARSTV+TAHGV QAAP PRFSRTPA PV  PPAA +PI EI W
Sbjct  304  LTWTEAAADEHLRARSTVVTAHGVDQAAPGPRFSRTPAAPVGRPPAATSPITEIGW  359


>gi|183984649|ref|YP_001852940.1| fatty-acid-CoA racemase Far [Mycobacterium marinum M]
 gi|183177975|gb|ACC43085.1| fatty-acid-CoA racemase Far [Mycobacterium marinum M]
Length=359

 Score =  634 bits (1635),  Expect = 6e-180, Method: Compositional matrix adjust.
 Identities = 318/356 (90%), Positives = 339/356 (96%), Gaps = 0/356 (0%)

Query  4    GGPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIVDL  63
            GGPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGL MP+EDRDLLHRGKRIVDL
Sbjct  4    GGPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLQMPAEDRDLLHRGKRIVDL  63

Query  64   DVKTQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPLA  123
            DVK+QPQA+LELAAKADVLLDCFRPGTCERLGIGPDDCA+VNPRLIFARITGWGQDGPLA
Sbjct  64   DVKSQPQALLELAAKADVLLDCFRPGTCERLGIGPDDCAAVNPRLIFARITGWGQDGPLA  123

Query  124  STAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGVG  183
             TAGHDINYLSQTGAL+A GY DRPP PPLNLVADFGGGSMLVLLGI+ ALYERERSG G
Sbjct  124  PTAGHDINYLSQTGALSALGYRDRPPTPPLNLVADFGGGSMLVLLGIMAALYERERSGQG  183

Query  184  QVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAIE  243
            QV+DAAMVDGVSVLAQMMWTMKGIGSLRD+RESFLLDGGAPFYRCYETSDGK+MAVGAIE
Sbjct  184  QVIDAAMVDGVSVLAQMMWTMKGIGSLRDERESFLLDGGAPFYRCYETSDGKHMAVGAIE  243

Query  244  PQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTPV  303
            PQFFAALL+GLGLSAA+VP+QLD+A YP+M ++F+ERFASRTRDEW  VFAGTDACVTPV
Sbjct  244  PQFFAALLAGLGLSAAEVPSQLDIAAYPKMREMFSERFASRTRDEWAAVFAGTDACVTPV  303

Query  304  LAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEINW  359
            L WSEAA +DHL+ARSTVI+AHGV+QAAPAPRFSRTPAGPV PPPA  TPI EINW
Sbjct  304  LKWSEAAASDHLRARSTVISAHGVEQAAPAPRFSRTPAGPVGPPPATITPIGEINW  359


>gi|254818312|ref|ZP_05223313.1| Far [Mycobacterium intracellulare ATCC 13950]
Length=359

 Score =  622 bits (1603),  Expect = 4e-176, Method: Compositional matrix adjust.
 Identities = 303/357 (85%), Positives = 325/357 (92%), Gaps = 1/357 (0%)

Query  4    GGPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRP-GGLTMPSEDRDLLHRGKRIVD  62
            GGPLAGV+VIELGGIGPGPHAGM+LADLGADVVRVRRP GGL MP+E RDLLHRGKRIVD
Sbjct  3    GGPLAGVRVIELGGIGPGPHAGMLLADLGADVVRVRRPSGGLEMPAEGRDLLHRGKRIVD  62

Query  63   LDVKTQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPL  122
            LDVKTQPQA+LELAAKADVLLDCFRPGTCERLGIGPDDCA+ NPRLIFARITGWGQDGPL
Sbjct  63   LDVKTQPQALLELAAKADVLLDCFRPGTCERLGIGPDDCAAANPRLIFARITGWGQDGPL  122

Query  123  ASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGV  182
            A TAGHDINYLSQTGAL+A GYADRPP+PPLNLVADFGGGSMLV+ GI VALYERERSG 
Sbjct  123  ARTAGHDINYLSQTGALSALGYADRPPIPPLNLVADFGGGSMLVVFGIAVALYERERSGK  182

Query  183  GQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAI  242
            GQV+DAAMVDGVS+LAQMMWTMK  G+LRD+R+SFLLDGGAPFY CYET+DG Y+AVGAI
Sbjct  183  GQVIDAAMVDGVSLLAQMMWTMKSTGALRDRRQSFLLDGGAPFYGCYETADGGYVAVGAI  242

Query  243  EPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTP  302
            EPQFFAALL GLGLS  DVP QLD   YP+M +IF +RFASRTRDEW R FAGTDACVTP
Sbjct  243  EPQFFAALLDGLGLSPEDVPGQLDKDSYPRMREIFTKRFASRTRDEWARTFAGTDACVTP  302

Query  303  VLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEINW  359
            VL W+EAA +DHL+ RSTVIT HGV QAAPAPRFSRTP GPV PPPAA TP+DEINW
Sbjct  303  VLTWTEAATDDHLRTRSTVITVHGVDQAAPAPRFSRTPTGPVEPPPAATTPLDEINW  359


>gi|118465733|ref|YP_880236.1| alpha-methylacyl-CoA racemase [Mycobacterium avium 104]
 gi|118167020|gb|ABK67917.1| alpha-methylacyl-CoA racemase [Mycobacterium avium 104]
Length=359

 Score =  615 bits (1587),  Expect = 3e-174, Method: Compositional matrix adjust.
 Identities = 300/359 (84%), Positives = 326/359 (91%), Gaps = 0/359 (0%)

Query  1    VTTGGPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRI  60
            +++GGPLAGV+VIELGGIGPGPHAGMVLADLGADVVRVRRPG   MPSEDRDLLHRGKRI
Sbjct  1    MSSGGPLAGVRVIELGGIGPGPHAGMVLADLGADVVRVRRPGVAAMPSEDRDLLHRGKRI  60

Query  61   VDLDVKTQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDG  120
            VDLDVK +PQA+L+LAAKADVLLDCFRPGTCERLGIGPDDCA+VNPRLIFARITGWGQ G
Sbjct  61   VDLDVKARPQALLDLAAKADVLLDCFRPGTCERLGIGPDDCAAVNPRLIFARITGWGQHG  120

Query  121  PLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERS  180
            PLA TAGHDINYLSQTG L+A G+ADRPP+PPLNLVADFGGGSMLVLLGI  ALYERERS
Sbjct  121  PLAQTAGHDINYLSQTGVLSALGHADRPPLPPLNLVADFGGGSMLVLLGITAALYERERS  180

Query  181  GVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVG  240
            G GQV+DAAMVDGVS+LAQMMWTMK  G+LRD+RESFLLDGGAPFY CYET+DGKY+AVG
Sbjct  181  GRGQVIDAAMVDGVSLLAQMMWTMKSTGALRDRRESFLLDGGAPFYGCYETADGKYVAVG  240

Query  241  AIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACV  300
            AIEPQFFAALL GLGLS  +VP QLD   YP+M +IF +RFA RTRDEW RVFAGTDACV
Sbjct  241  AIEPQFFAALLDGLGLSPEEVPGQLDRDSYPRMREIFTQRFAGRTRDEWARVFAGTDACV  300

Query  301  TPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEINW  359
            TPVL WSEAA ++HL+ARSTVITAHGV QAAPAPRFS TPA PV  PPA +TP+DEINW
Sbjct  301  TPVLTWSEAAASEHLRARSTVITAHGVDQAAPAPRFSHTPARPVGRPPATSTPLDEINW  359


>gi|41406883|ref|NP_959719.1| Far [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41395233|gb|AAS03102.1| Far [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|336461195|gb|EGO40071.1| putative acyl-CoA transferase/carnitine dehydratase [Mycobacterium 
avium subsp. paratuberculosis S397]
Length=359

 Score =  615 bits (1586),  Expect = 4e-174, Method: Compositional matrix adjust.
 Identities = 299/359 (84%), Positives = 326/359 (91%), Gaps = 0/359 (0%)

Query  1    VTTGGPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRI  60
            +++GGPLAGV+VIELGGIGPGPHAGMVLADLGADVVRVRRPG   MPSEDRDLLHRGKRI
Sbjct  1    MSSGGPLAGVRVIELGGIGPGPHAGMVLADLGADVVRVRRPGVAAMPSEDRDLLHRGKRI  60

Query  61   VDLDVKTQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDG  120
            VDLDVK +PQA+L+LAAKADVLLDCFRPGTCERLGIGPDDCA+VNPRLIFARITGWGQ G
Sbjct  61   VDLDVKARPQALLDLAAKADVLLDCFRPGTCERLGIGPDDCAAVNPRLIFARITGWGQHG  120

Query  121  PLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERS  180
            PLA TAGHDINYLSQTG L+A G+ADRPP+PPLNLVADFGGGSMLVLLGI  ALYERERS
Sbjct  121  PLAQTAGHDINYLSQTGVLSALGHADRPPLPPLNLVADFGGGSMLVLLGITAALYERERS  180

Query  181  GVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVG  240
            G GQV+DAAMVDGVS+LAQMMWTMK  G+LRD+RESFLLDGGAPFY CYET+DGKY+AVG
Sbjct  181  GRGQVIDAAMVDGVSLLAQMMWTMKSTGALRDRRESFLLDGGAPFYGCYETADGKYVAVG  240

Query  241  AIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACV  300
            AIEPQFFAALL GLGLS  +VP QLD   YP+M ++F +RFA+RTRDEW RVFAGTDACV
Sbjct  241  AIEPQFFAALLDGLGLSPEEVPGQLDRDSYPRMREVFTQRFAARTRDEWARVFAGTDACV  300

Query  301  TPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEINW  359
            TPVL WSEAA ++HL+ARSTVITAHGV QAAPAPRFS TPA PV  PPA  TP+DEINW
Sbjct  301  TPVLTWSEAAASEHLRARSTVITAHGVDQAAPAPRFSHTPARPVGRPPATTTPLDEINW  359


>gi|254773862|ref|ZP_05215378.1| Far [Mycobacterium avium subsp. avium ATCC 25291]
Length=359

 Score =  613 bits (1580),  Expect = 2e-173, Method: Compositional matrix adjust.
 Identities = 298/359 (84%), Positives = 326/359 (91%), Gaps = 0/359 (0%)

Query  1    VTTGGPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRI  60
            +++GGPLAGV+VIELGGIGPGPHAGMVLADLGADVVRVRRPG   MPSEDRDLLHRGKRI
Sbjct  1    MSSGGPLAGVRVIELGGIGPGPHAGMVLADLGADVVRVRRPGVAAMPSEDRDLLHRGKRI  60

Query  61   VDLDVKTQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDG  120
            VDLDVK +P+A+L+LAAKADVLLDCFRPGTCERLGIGPDDCA+VNPRLIFARITGWGQ G
Sbjct  61   VDLDVKARPRALLDLAAKADVLLDCFRPGTCERLGIGPDDCAAVNPRLIFARITGWGQHG  120

Query  121  PLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERS  180
            PLA TAGHDINYLSQTG L+A G+ADRPP+PPLNLVADFGGGSMLVLLGI  ALYERERS
Sbjct  121  PLAQTAGHDINYLSQTGVLSALGHADRPPLPPLNLVADFGGGSMLVLLGITAALYERERS  180

Query  181  GVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVG  240
            G GQV+DAAMVDGVS+LAQMMWTMK  G+LRD+RESFLLDGGAPFY CYET+DGKY+AVG
Sbjct  181  GRGQVIDAAMVDGVSLLAQMMWTMKSTGALRDRRESFLLDGGAPFYGCYETADGKYVAVG  240

Query  241  AIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACV  300
            AIEPQFFAALL GLGLS  +VP QLD   YP+M ++F +RFA+RTRDEW RVFAGTDACV
Sbjct  241  AIEPQFFAALLDGLGLSPEEVPGQLDRDSYPRMREVFTQRFAARTRDEWARVFAGTDACV  300

Query  301  TPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEINW  359
            TPVL WSEAA ++HL+ARSTVITAHGV QAAPAPRFS T AGPV  PPA  TP+DEINW
Sbjct  301  TPVLTWSEAAASEHLRARSTVITAHGVDQAAPAPRFSHTRAGPVGRPPATTTPLDEINW  359


>gi|342860458|ref|ZP_08717109.1| Far [Mycobacterium colombiense CECT 3035]
 gi|342132113|gb|EGT85354.1| Far [Mycobacterium colombiense CECT 3035]
Length=360

 Score =  609 bits (1571),  Expect = 2e-172, Method: Compositional matrix adjust.
 Identities = 297/357 (84%), Positives = 325/357 (92%), Gaps = 1/357 (0%)

Query  4    GGPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRP-GGLTMPSEDRDLLHRGKRIVD  62
            GGPLAGV+VIELGGIGPGPHAGM+LADLGADVVRVRRP GGLTMP+E RDLLHRGKRIVD
Sbjct  4    GGPLAGVRVIELGGIGPGPHAGMLLADLGADVVRVRRPMGGLTMPAEGRDLLHRGKRIVD  63

Query  63   LDVKTQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPL  122
            LDVKTQPQA+L LAAKADVLLDCFRPGTCERLGIGP+DCA+VNPRLIFARITGWGQDGPL
Sbjct  64   LDVKTQPQALLNLAAKADVLLDCFRPGTCERLGIGPEDCAAVNPRLIFARITGWGQDGPL  123

Query  123  ASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGV  182
            A TAGHDINYLS+TGAL+A GYADRPPM PLNLVADFGGGSMLV++GI  ALYERERSG 
Sbjct  124  APTAGHDINYLSRTGALSALGYADRPPMAPLNLVADFGGGSMLVVIGIAAALYERERSGA  183

Query  183  GQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAI  242
            GQV+DAAMVDGVS+LAQMMWTMK  G+LRD+RESFLLDGGAPFY CY T+DG+Y+AVGAI
Sbjct  184  GQVIDAAMVDGVSLLAQMMWTMKSTGALRDRRESFLLDGGAPFYGCYATADGQYVAVGAI  243

Query  243  EPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTP  302
            EPQFFAALL+GLGLS  DVP Q D A YP+M ++F  RFASRTRDEW + FAGTDACVTP
Sbjct  244  EPQFFAALLAGLGLSPDDVPAQHDKASYPRMREVFTRRFASRTRDEWAQTFAGTDACVTP  303

Query  303  VLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEINW  359
            VL WSEAA ++HL+ARSTVITAHG  QAAPAPRFSRTP+GPV  PPAA TP+ EI+W
Sbjct  304  VLTWSEAAADEHLRARSTVITAHGADQAAPAPRFSRTPSGPVGAPPAATTPVSEIDW  360


>gi|240171440|ref|ZP_04750099.1| putative fatty-acid-CoA racemase [Mycobacterium kansasii ATCC 
12478]
Length=359

 Score =  597 bits (1540),  Expect = 7e-169, Method: Compositional matrix adjust.
 Identities = 321/359 (90%), Positives = 331/359 (93%), Gaps = 0/359 (0%)

Query  1    VTTGGPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRI  60
            +T GGPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRI
Sbjct  1    MTGGGPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRI  60

Query  61   VDLDVKTQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDG  120
            VDLDVK QP A+L LAAKADVLLDCFRPGTCERLGIGPDDCA+VNPRLIFARITGWGQDG
Sbjct  61   VDLDVKAQPGALLALAAKADVLLDCFRPGTCERLGIGPDDCAAVNPRLIFARITGWGQDG  120

Query  121  PLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERS  180
            PLASTAGHDINYLSQTGAL+A GYADRPPMPPLNLVADFGGGSMLVLLGIV ALYERERS
Sbjct  121  PLASTAGHDINYLSQTGALSALGYADRPPMPPLNLVADFGGGSMLVLLGIVAALYERERS  180

Query  181  GVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVG  240
            G GQV+DAAMVDGVSVLAQMMWTMK IGSLRD+RESFLLDGGAPFY CYET+DGKY+AVG
Sbjct  181  GKGQVIDAAMVDGVSVLAQMMWTMKAIGSLRDERESFLLDGGAPFYGCYETADGKYLAVG  240

Query  241  AIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACV  300
            AIEPQFFAALL+GLGL A DVP QLDV  YP+M DIFAERFA RTRDEWT VFAGTDACV
Sbjct  241  AIEPQFFAALLAGLGLKADDVPNQLDVGSYPRMRDIFAERFAGRTRDEWTEVFAGTDACV  300

Query  301  TPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEINW  359
            TPVL WSEAA N HL ARSTVI   GV QAAPAPRFSRTPAGPV  PPAA TPIDEINW
Sbjct  301  TPVLTWSEAAGNAHLTARSTVINVDGVDQAAPAPRFSRTPAGPVAAPPAATTPIDEINW  359


>gi|118471931|ref|YP_889967.1| alpha-methylacyl-CoA racemase [Mycobacterium smegmatis str. MC2 
155]
 gi|118173218|gb|ABK74114.1| alpha-methylacyl-CoA racemase [Mycobacterium smegmatis str. MC2 
155]
Length=360

 Score =  566 bits (1459),  Expect = 2e-159, Method: Compositional matrix adjust.
 Identities = 269/359 (75%), Positives = 309/359 (87%), Gaps = 0/359 (0%)

Query  1    VTTGGPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRI  60
            +T  GPL+GV+V+ELGGIGPGPHA M+L+DLGADVVRVRRPGGLT+P+E+ DLLHRGKRI
Sbjct  1    MTKTGPLSGVRVVELGGIGPGPHAAMMLSDLGADVVRVRRPGGLTLPAENVDLLHRGKRI  60

Query  61   VDLDVKTQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDG  120
            VDLDVK +P  +L+L AKADVLLDCFRPGTCERLGIGP +C +VNPRLIFARITGWGQDG
Sbjct  61   VDLDVKAEPAKLLDLVAKADVLLDCFRPGTCERLGIGPKECEAVNPRLIFARITGWGQDG  120

Query  121  PLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERS  180
            PLA TAGHDINYLSQTGAL+A GY DRPP+ P+NLVADFGGGSMLVL+GIV ALYERERS
Sbjct  121  PLAQTAGHDINYLSQTGALSAIGYRDRPPVAPMNLVADFGGGSMLVLVGIVSALYERERS  180

Query  181  GVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVG  240
            G GQV+DAAMVDGVS+LAQMMWTM+  GSLRD+RESFLLDGGAPFYRCYET+DG YMAVG
Sbjct  181  GKGQVIDAAMVDGVSMLAQMMWTMRATGSLRDERESFLLDGGAPFYRCYETADGGYMAVG  240

Query  241  AIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACV  300
            +IEPQFFA L++GLGL+A ++P Q ++  Y +M  IF ERF ++TR EWT +FAGTDACV
Sbjct  241  SIEPQFFAQLVAGLGLAADEIPGQFEIGRYDEMRKIFTERFKTKTRAEWTEIFAGTDACV  300

Query  301  TPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEINW  359
            TPVL W EAA N HL+ RST+I   GV QAAPAPRFSRTPA     PP  +T I++I W
Sbjct  301  TPVLTWGEAAENAHLRERSTLIDVDGVAQAAPAPRFSRTPAPTPGKPPQGSTSIEDIGW  359


>gi|169627944|ref|YP_001701593.1| fatty-acid-CoA racemase Far [Mycobacterium abscessus ATCC 19977]
 gi|169239911|emb|CAM60939.1| Probable fatty-acid-CoA racemase Far [Mycobacterium abscessus]
Length=363

 Score =  517 bits (1331),  Expect = 1e-144, Method: Compositional matrix adjust.
 Identities = 245/355 (70%), Positives = 287/355 (81%), Gaps = 0/355 (0%)

Query  5    GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIVDLD  64
            GPLAGVKVIELGGIGPGPHA M+L+DLGADV+RVRRPGGL +P+E+ DL HRGKR+V+LD
Sbjct  9    GPLAGVKVIELGGIGPGPHAAMMLSDLGADVIRVRRPGGLAIPAEETDLFHRGKRLVNLD  68

Query  65   VKTQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPLAS  124
            VK  P+A+L L  KADVLLD FRPG CER+GIGP++CA  NPRLIFAR+TGWGQ GP+A 
Sbjct  69   VKKDPEALLALVDKADVLLDPFRPGVCERIGIGPEECAKRNPRLIFARMTGWGQHGPMAD  128

Query  125  TAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGVGQ  184
             AGHDINYLS TGAL + GY DRPPMPP+NLVADFGGGSML++ GI+ ALYERE+SG GQ
Sbjct  129  RAGHDINYLSLTGALGSMGYKDRPPMPPMNLVADFGGGSMLLVQGILAALYEREKSGKGQ  188

Query  185  VVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAIEP  244
            V+D AMVDGVS LAQM WTM   G L D+RE+ LLDGG+PFY  YETSDGKYMAVG+IEP
Sbjct  189  VIDGAMVDGVSQLAQMQWTMYNNGLLFDEREAGLLDGGSPFYGTYETSDGKYMAVGSIEP  248

Query  245  QFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTPVL  304
            QFFA L+ GLGL    VP QLD A YP+M  +F + F ++TRDEWT +F GTDACV+PVL
Sbjct  249  QFFAILVQGLGLDPESVPFQLDKARYPEMRKMFDDAFKTKTRDEWTEIFIGTDACVSPVL  308

Query  305  AWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEINW  359
             W EA  N+HL+ R T++   GV QAAPAPRFSRTP+GP+  PP   T + +I W
Sbjct  309  TWGEAKQNEHLRDRGTIVDVDGVTQAAPAPRFSRTPSGPLGAPPKDTTELSDIGW  363


>gi|262203639|ref|YP_003274847.1| alpha-methylacyl-CoA racemase [Gordonia bronchialis DSM 43247]
 gi|262086986|gb|ACY22954.1| Alpha-methylacyl-CoA racemase [Gordonia bronchialis DSM 43247]
Length=370

 Score =  414 bits (1065),  Expect = 1e-113, Method: Compositional matrix adjust.
 Identities = 205/352 (59%), Positives = 256/352 (73%), Gaps = 3/352 (0%)

Query  5    GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIVDLD  64
            GPL+ ++VIE  GIGPGPHA M+LADLGADVVRV+RPG L     + D L RG+R+V+ +
Sbjct  13   GPLSAIRVIEFAGIGPGPHAAMMLADLGADVVRVQRPGSLPAEGRNADALLRGRRVVEAN  72

Query  65   VK--TQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPL  122
            +K     + +L L AKADV+++ FRPG  ERLG GPDD  SVNP L++ R+TGWGQ+GP 
Sbjct  73   LKDPADRETILGLIAKADVVIEGFRPGVMERLGFGPDDLESVNPGLVYGRMTGWGQEGPR  132

Query  123  ASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGV  182
            A+ AGHDINY+S TG L A G  D  P+PPLNL  DFGGGSM +++G++ AL ER+ SG 
Sbjct  133  ANLAGHDINYISLTGMLHAIGRKDDRPVPPLNLAGDFGGGSMFLVMGVLAALLERQSSGR  192

Query  183  GQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAI  242
            GQVVDAAMVDG SVL QMMW  +G G   D R   +LD GAP+Y  YETSDGKYMAVGAI
Sbjct  193  GQVVDAAMVDGASVLGQMMWAFRGTGLWSDVRGVNMLDTGAPYYEVYETSDGKYMAVGAI  252

Query  243  EPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTP  302
            EPQF+A LL+GLGL+ AD+P Q D+A + ++ ++F E F SRTRDEWT++F  TDAC +P
Sbjct  253  EPQFYAELLNGLGLAGADLPEQNDIANWGKLKEVFTETFKSRTRDEWTKIFDDTDACTSP  312

Query  303  VLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRT-PAGPVRPPPAAATP  353
            VL ++EA  + H+ ARS ++   GV QA  APRFSRT P  P  P  AA  P
Sbjct  313  VLTFAEAPEDPHMSARSNLVEIDGVMQAQVAPRFSRTQPETPEGPSRAATDP  364


>gi|343927798|ref|ZP_08767266.1| alpha-methylacyl-CoA racemase [Gordonia alkanivorans NBRC 16433]
 gi|343762439|dbj|GAA14192.1| alpha-methylacyl-CoA racemase [Gordonia alkanivorans NBRC 16433]
Length=369

 Score =  414 bits (1063),  Expect = 1e-113, Method: Compositional matrix adjust.
 Identities = 206/352 (59%), Positives = 254/352 (73%), Gaps = 3/352 (0%)

Query  5    GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIVDLD  64
            GPL+ ++VIE  GIGPGPHA M+LADLGADVVRV+RPG L  P  + D L RG+R+V+ +
Sbjct  13   GPLSSIRVIEFAGIGPGPHAAMLLADLGADVVRVQRPGTLPKPGVNADALLRGRRVVEAN  72

Query  65   VK--TQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPL  122
            +K  T    +L+L AKADV+++ FRPG  ERLG GPDD   VNP L++ R+TGWGQ+GP 
Sbjct  73   LKDETDRATILDLVAKADVIIEGFRPGVMERLGFGPDDLTEVNPGLVYGRMTGWGQEGPR  132

Query  123  ASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGV  182
            A+ AGHDINY+S TG L A G  D  P+PPLNL  DFGGGSM +++G++ AL ER  SG 
Sbjct  133  ANLAGHDINYISLTGLLHAIGRKDDRPVPPLNLAGDFGGGSMFLVVGVLAALLERGISGK  192

Query  183  GQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAI  242
            GQVVDAAMVDG SVL QMMW  +G G   D R + +LD GAP+Y  YETSDGKYMAVGAI
Sbjct  193  GQVVDAAMVDGASVLGQMMWAFRGTGLWSDTRGTNMLDTGAPYYEVYETSDGKYMAVGAI  252

Query  243  EPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTP  302
            EPQF+A LL GLGL  AD+P Q D+A + ++ +IF E F SRTRDEW +VF GTDAC +P
Sbjct  253  EPQFYAELLKGLGLEDADLPAQNDIANWGKLKEIFTETFKSRTRDEWAKVFDGTDACTSP  312

Query  303  VLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRT-PAGPVRPPPAAATP  353
            VL ++EA  + H+ AR+ ++   GV QA  APRFSRT P  P  P   A  P
Sbjct  313  VLTFAEAPTDPHMAARANLVDIDGVTQAQVAPRFSRTQPETPAGPSTEAVDP  364


>gi|257056362|ref|YP_003134194.1| putative acyl-CoA transferase/carnitine dehydratase [Saccharomonospora 
viridis DSM 43017]
 gi|256586234|gb|ACU97367.1| predicted acyl-CoA transferase/carnitine dehydratase [Saccharomonospora 
viridis DSM 43017]
Length=358

 Score =  412 bits (1059),  Expect = 4e-113, Method: Compositional matrix adjust.
 Identities = 210/337 (63%), Positives = 254/337 (76%), Gaps = 7/337 (2%)

Query  5    GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIVDLD  64
            GPL G++V+ELGGIGPGPHA M+L DLGADVVR+ RPG  T     RD L RG+R V  D
Sbjct  3    GPLTGLRVVELGGIGPGPHAAMILGDLGADVVRIDRPGAQT-----RDPLLRGRRSVVAD  57

Query  65   VKTQP--QAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPL  122
            +KT      +L L AKADVL++ +RPG  ERLGIGP DC +VNPRL++ R+TGWGQDGPL
Sbjct  58   LKTDEGRDLVLRLVAKADVLVEGYRPGVAERLGIGPADCHAVNPRLVYGRMTGWGQDGPL  117

Query  123  ASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGV  182
            A  AGHDINY+S TGAL A G     P+PPLNLV DFGGGSML+L GI+ AL+ERERSG 
Sbjct  118  APRAGHDINYISLTGALHAIGRTGERPVPPLNLVGDFGGGSMLLLTGILSALWERERSGK  177

Query  183  GQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAI  242
            GQVVDAAMVDG S+L QMMW M+G G+  D+R + LLDGGAPFY  YE SDG+YMAVGA+
Sbjct  178  GQVVDAAMVDGASLLLQMMWAMRGQGAWSDERGTNLLDGGAPFYDTYECSDGRYMAVGAL  237

Query  243  EPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTP  302
            EPQF+A LL GLGL  A++P Q D AG+P +     E F ++ R+ W +VFA TDACVTP
Sbjct  238  EPQFYAQLLEGLGLDPAELPEQYDRAGWPVLRARIGEAFKAQPREHWEKVFADTDACVTP  297

Query  303  VLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRT  339
            VL+++EAA++ HL AR T+    G+ Q APAPRFSR+
Sbjct  298  VLSFAEAAHHPHLVARGTITELDGMPQPAPAPRFSRS  334


>gi|302526303|ref|ZP_07278645.1| L-carnitine dehydratase/bile acid-inducible protein F [Streptomyces 
sp. AA4]
 gi|302435198|gb|EFL07014.1| L-carnitine dehydratase/bile acid-inducible protein F [Streptomyces 
sp. AA4]
Length=364

 Score =  411 bits (1057),  Expect = 9e-113, Method: Compositional matrix adjust.
 Identities = 210/338 (63%), Positives = 256/338 (76%), Gaps = 3/338 (0%)

Query  5    GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGG-LTMPSEDRDLLHRGKRIVDL  63
            GPL+G+KV+EL GIGPGPHA MVLADLGADVVRV RP G L +     D L RG+R V  
Sbjct  3    GPLSGLKVVELAGIGPGPHACMVLADLGADVVRVERPSGSLDLTGGKPDPLLRGRRSVAA  62

Query  64   DVKTQP--QAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGP  121
            D+KT    + +L LAAKADVL++  RPG  ERLG+GPDDC S NPRL++ R+TGWGQ+GP
Sbjct  63   DLKTPEGRELVLRLAAKADVLIEGLRPGVTERLGVGPDDCFSANPRLVYGRMTGWGQEGP  122

Query  122  LASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSG  181
            LA  AGHDINYL  TG L A G A   P+PPLNLV DFGGGSM ++ G++ AL+E  R+G
Sbjct  123  LAQRAGHDINYLGLTGVLHAIGRAGERPVPPLNLVGDFGGGSMFLIAGVLAALWECGRTG  182

Query  182  VGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGA  241
             GQVVDAAMVDG +VL+QMMW ++G+GS  D+R + LLDGGAPFY  Y  +DG+Y+AVGA
Sbjct  183  RGQVVDAAMVDGANVLSQMMWALRGLGSWSDERGTNLLDGGAPFYDTYVCADGRYVAVGA  242

Query  242  IEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVT  301
            +EPQF+AALL+GLGL+A D+P QLD  G+P +   F   F +RTRDEW  +F GTDACVT
Sbjct  243  LEPQFYAALLNGLGLAAEDLPPQLDRDGWPTLRATFTRAFLTRTRDEWASIFDGTDACVT  302

Query  302  PVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRT  339
            PVLA  EAA + H+ ARS +IT  G+ Q APAPRFSR+
Sbjct  303  PVLAPDEAAAHPHIAARSGLITLDGIVQPAPAPRFSRS  340


>gi|296270062|ref|YP_003652694.1| L-carnitine dehydratase/bile acid-inducible protein F [Thermobispora 
bispora DSM 43833]
 gi|296092849|gb|ADG88801.1| L-carnitine dehydratase/bile acid-inducible protein F [Thermobispora 
bispora DSM 43833]
Length=363

 Score =  405 bits (1041),  Expect = 5e-111, Method: Compositional matrix adjust.
 Identities = 207/355 (59%), Positives = 257/355 (73%), Gaps = 5/355 (1%)

Query  6    PLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIVDLDV  65
            PL G +V+EL GIGPGPHA M+LADLGADVVRV RPG   +P   RD   RG+R V +D+
Sbjct  4    PLTGTRVVELAGIGPGPHAAMILADLGADVVRVERPGAAGIPGAMRDPATRGRRTVVVDL  63

Query  66   KTQPQA---MLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPL  122
            K QP+    +L+L A+ADVLL+ FRPG  ERLG+GP++C + N RL++AR+TGWGQ GPL
Sbjct  64   K-QPEGKAKVLDLIARADVLLEGFRPGVTERLGLGPEECTARNKRLVYARVTGWGQTGPL  122

Query  123  ASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGV  182
            A  AGHDINY+S TGAL A G A+RP +PPLNLVADFGGGSML ++GI+ AL ERERSG 
Sbjct  123  AQRAGHDINYISLTGALHAIGEAERP-IPPLNLVADFGGGSMLAVVGILAALLERERSGE  181

Query  183  GQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAI  242
            GQVVD AMVDGVS L QM W M   G  RD+R S LLDGGAP+YR Y  +DG ++AVG I
Sbjct  182  GQVVDIAMVDGVSSLMQMAWGMYSAGLWRDRRASNLLDGGAPYYRTYRCADGGFVAVGCI  241

Query  243  EPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTP  302
            EPQF+A ++  LGL  A +P + D + +P++++IF  RF    RD W  +FA +DACVTP
Sbjct  242  EPQFYAEMVEKLGLDLATLPDRNDPSQWPKLHEIFERRFGEHPRDHWAELFADSDACVTP  301

Query  303  VLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEI  357
            VL+ +E   + H+ AR +V+T  GV QA  APRFSRT  G V P    A+ IDEI
Sbjct  302  VLSLAEVPRHPHIAARGSVVTVDGVTQAGVAPRFSRTAGGGVNPIGQTASDIDEI  356


>gi|120405530|ref|YP_955359.1| L-carnitine dehydratase/bile acid-inducible protein F [Mycobacterium 
vanbaalenii PYR-1]
 gi|119958348|gb|ABM15353.1| L-carnitine dehydratase/bile acid-inducible protein F [Mycobacterium 
vanbaalenii PYR-1]
Length=364

 Score =  401 bits (1030),  Expect = 1e-109, Method: Compositional matrix adjust.
 Identities = 198/347 (58%), Positives = 252/347 (73%), Gaps = 4/347 (1%)

Query  5    GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSED--RDLLHRGKRIVD  62
            GPL G++V+EL GIGPGPHA M+L DLGADVVR+ RPG    P+     D L R +R V 
Sbjct  3    GPLQGLRVVELAGIGPGPHAAMILGDLGADVVRIERPGKGPGPATKPGGDYLLRNRRSVA  62

Query  63   LDVKTQPQ--AMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDG  120
             ++K++     +L L AKADVL++ FRPG  ERLG+GP DCA VN +LI+AR+TGWGQDG
Sbjct  63   ANLKSEEDRDMVLRLIAKADVLIEGFRPGVTERLGLGPHDCAKVNEKLIYARMTGWGQDG  122

Query  121  PLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERS  180
            P A  AGHDINY+S  GAL A G A   P+PPLNLV DFGGGSM +L+G++ ALYERERS
Sbjct  123  PRAQQAGHDINYISLNGALHAIGRAGERPVPPLNLVGDFGGGSMFLLVGVLSALYERERS  182

Query  181  GVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVG  240
            G GQVVDAAMVDG SVL+ MMW  +G+G   D+R + +LD GAP+Y  YET+DGKY+AVG
Sbjct  183  GKGQVVDAAMVDGSSVLSMMMWAFRGMGMWSDERGTNMLDTGAPYYDTYETADGKYVAVG  242

Query  241  AIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACV  300
            AIEPQF+A +L G+GL  AD+P Q D++ +P++ + F + FA+  RD W +VFAGTDACV
Sbjct  243  AIEPQFYAEMLKGIGLDGADLPDQNDMSRWPELREAFTKAFAAHDRDHWAKVFAGTDACV  302

Query  301  TPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPP  347
            TPVL+++E  +  H   R T  + +G    APAPRFSR+     +PP
Sbjct  303  TPVLSFAEVESEPHNTERDTFYSENGSLYPAPAPRFSRSAPSAPKPP  349


>gi|15840584|ref|NP_335621.1| fatty acid-CoA racemase [Mycobacterium tuberculosis CDC1551]
 gi|148822356|ref|YP_001287111.1| alpha-methylacyl-CoA racemase mcr [Mycobacterium tuberculosis 
F11]
 gi|253799815|ref|YP_003032816.1| alpha-methylacyl-CoA racemase mcr [Mycobacterium tuberculosis 
KZN 1435]
 16 more sequence titles
 Length=395

 Score =  400 bits (1029),  Expect = 1e-109, Method: Compositional matrix adjust.
 Identities = 201/347 (58%), Positives = 252/347 (73%), Gaps = 4/347 (1%)

Query  5    GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIVDLD  64
            GPL+G++V+EL GIGPGPHA M+L DLGADVVR+ RP  +   S  RD + R +RIV  D
Sbjct  38   GPLSGLRVVELAGIGPGPHAAMILGDLGADVVRIDRPSSVDGIS--RDAMLRNRRIVTAD  95

Query  65   VKTQP--QAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPL  122
            +K+    +  L+L AKADVL++ +RPG  ERLG+GP++CA VN RLI+AR+TGWGQ GP 
Sbjct  96   LKSDQGLELALKLIAKADVLIEGYRPGVTERLGLGPEECAKVNDRLIYARMTGWGQTGPR  155

Query  123  ASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGV  182
            +  AGHDINY+S  G L A G  D  P+PPLNLV DFGGGSM +L+GI+ AL+ER+ SG 
Sbjct  156  SQQAGHDINYISLNGILHAIGRGDERPVPPLNLVGDFGGGSMFLLVGILAALWERQSSGK  215

Query  183  GQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAI  242
            GQVVDAAMVDG SVL QMMW M+  G   D R + +LDGGAP+Y  YE +DG+Y+AVGAI
Sbjct  216  GQVVDAAMVDGSSVLIQMMWAMRATGMWTDTRGANMLDGGAPYYDTYECADGRYVAVGAI  275

Query  243  EPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTP  302
            EPQF+AA+L+GLGL AA++P Q D A +P++  +  E FAS  RD W  VFA +DACVTP
Sbjct  276  EPQFYAAMLAGLGLDAAELPPQNDRARWPELRALLTEAFASHDRDHWGAVFANSDACVTP  335

Query  303  VLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPA  349
            VLA+ E  N  H+  R+T   A+G  Q  PAPRFSRT +   RPP A
Sbjct  336  VLAFGEVHNEPHIIERNTFYEANGGWQPMPAPRFSRTASSQPRPPAA  382


>gi|240172481|ref|ZP_04751140.1| Mcr protein [Mycobacterium kansasii ATCC 12478]
Length=361

 Score =  400 bits (1028),  Expect = 2e-109, Method: Compositional matrix adjust.
 Identities = 199/359 (56%), Positives = 256/359 (72%), Gaps = 11/359 (3%)

Query  5    GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRP----GGLTMPSEDRDLLHRGKRI  60
            GPL G++V+EL GIGPGPHA M+L DLGADVVR+ RP    GG+      +D + R +RI
Sbjct  3    GPLHGLRVVELAGIGPGPHAAMILGDLGADVVRIDRPAAGSGGVA-----KDAMLRNRRI  57

Query  61   VDLDVKTQP--QAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQ  118
            +  D+K+    + +L+L AKADVL++ +RPG  ERLG+GP+DCA+VN RL++AR+TGWGQ
Sbjct  58   ITADLKSDQGRELVLKLVAKADVLIEGYRPGVTERLGLGPEDCATVNDRLVYARMTGWGQ  117

Query  119  DGPLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERE  178
             GP +  AGHDINY+S  G L A G  +  P+PPLNLV DFGGGSM +L+GI+ AL+ER+
Sbjct  118  AGPRSQQAGHDINYISLNGILHAIGRVNERPVPPLNLVGDFGGGSMFLLVGILAALWERQ  177

Query  179  RSGVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMA  238
             SG GQV+DAAMVDG SVL QMMW M+  G   D R + +LDGGAP+Y  YE +DG+Y+A
Sbjct  178  SSGKGQVIDAAMVDGSSVLVQMMWAMRATGMWTDVRGTNMLDGGAPYYDTYECADGRYVA  237

Query  239  VGAIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDA  298
            VGAIEPQF+AA+LSGLGL AAD+P Q DV  +P++  +  + F    RD W +VFA TDA
Sbjct  238  VGAIEPQFYAAMLSGLGLDAADLPAQNDVTRWPELRAVLTDAFGRHDRDHWAKVFADTDA  297

Query  299  CVTPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEI  357
            CVTPVLA+ E  N  H+  R+T    +G  Q  PAPRFSRT     RPP AA + I+ +
Sbjct  298  CVTPVLAFGEVHNEPHIAERNTFYEVNGSPQPMPAPRFSRTAPDQPRPPVAAVSDIEAV  356


>gi|15608283|ref|NP_215659.1| alpha-methylacyl-CoA racemase [Mycobacterium tuberculosis H37Rv]
 gi|31792338|ref|NP_854831.1| alpha-methylacyl-CoA racemase [Mycobacterium bovis AF2122/97]
 gi|121637076|ref|YP_977299.1| putative alpha-methylacyl-CoA racemase mcr [Mycobacterium bovis 
BCG str. Pasteur 1173P2]
 79 more sequence titles
 Length=360

 Score =  400 bits (1027),  Expect = 3e-109, Method: Compositional matrix adjust.
 Identities = 201/347 (58%), Positives = 252/347 (73%), Gaps = 4/347 (1%)

Query  5    GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIVDLD  64
            GPL+G++V+EL GIGPGPHA M+L DLGADVVR+ RP  +   S  RD + R +RIV  D
Sbjct  3    GPLSGLRVVELAGIGPGPHAAMILGDLGADVVRIDRPSSVDGIS--RDAMLRNRRIVTAD  60

Query  65   VKTQP--QAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPL  122
            +K+    +  L+L AKADVL++ +RPG  ERLG+GP++CA VN RLI+AR+TGWGQ GP 
Sbjct  61   LKSDQGLELALKLIAKADVLIEGYRPGVTERLGLGPEECAKVNDRLIYARMTGWGQTGPR  120

Query  123  ASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGV  182
            +  AGHDINY+S  G L A G  D  P+PPLNLV DFGGGSM +L+GI+ AL+ER+ SG 
Sbjct  121  SQQAGHDINYISLNGILHAIGRGDERPVPPLNLVGDFGGGSMFLLVGILAALWERQSSGK  180

Query  183  GQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAI  242
            GQVVDAAMVDG SVL QMMW M+  G   D R + +LDGGAP+Y  YE +DG+Y+AVGAI
Sbjct  181  GQVVDAAMVDGSSVLIQMMWAMRATGMWTDTRGANMLDGGAPYYDTYECADGRYVAVGAI  240

Query  243  EPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTP  302
            EPQF+AA+L+GLGL AA++P Q D A +P++  +  E FAS  RD W  VFA +DACVTP
Sbjct  241  EPQFYAAMLAGLGLDAAELPPQNDRARWPELRALLTEAFASHDRDHWGAVFANSDACVTP  300

Query  303  VLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPA  349
            VLA+ E  N  H+  R+T   A+G  Q  PAPRFSRT +   RPP A
Sbjct  301  VLAFGEVHNEPHIIERNTFYEANGGWQPMPAPRFSRTASSQPRPPAA  347


>gi|289555070|ref|ZP_06444280.1| alpha-methylacyl-CoA racemase mcr [Mycobacterium tuberculosis 
KZN 605]
 gi|289439702|gb|EFD22195.1| alpha-methylacyl-CoA racemase mcr [Mycobacterium tuberculosis 
KZN 605]
Length=383

 Score =  399 bits (1026),  Expect = 3e-109, Method: Compositional matrix adjust.
 Identities = 201/347 (58%), Positives = 252/347 (73%), Gaps = 4/347 (1%)

Query  5    GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIVDLD  64
            GPL+G++V+EL GIGPGPHA M+L DLGADVVR+ RP  +   S  RD + R +RIV  D
Sbjct  26   GPLSGLRVVELAGIGPGPHAAMILGDLGADVVRIDRPSSVDGIS--RDAMLRNRRIVTAD  83

Query  65   VKTQP--QAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPL  122
            +K+    +  L+L AKADVL++ +RPG  ERLG+GP++CA VN RLI+AR+TGWGQ GP 
Sbjct  84   LKSDQGLELALKLIAKADVLIEGYRPGVTERLGLGPEECAKVNDRLIYARMTGWGQTGPR  143

Query  123  ASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGV  182
            +  AGHDINY+S  G L A G  D  P+PPLNLV DFGGGSM +L+GI+ AL+ER+ SG 
Sbjct  144  SQQAGHDINYISLNGILHAIGRGDERPVPPLNLVGDFGGGSMFLLVGILAALWERQSSGK  203

Query  183  GQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAI  242
            GQVVDAAMVDG SVL QMMW M+  G   D R + +LDGGAP+Y  YE +DG+Y+AVGAI
Sbjct  204  GQVVDAAMVDGSSVLIQMMWAMRATGMWTDTRGANMLDGGAPYYDTYECADGRYVAVGAI  263

Query  243  EPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTP  302
            EPQF+AA+L+GLGL AA++P Q D A +P++  +  E FAS  RD W  VFA +DACVTP
Sbjct  264  EPQFYAAMLAGLGLDAAELPPQNDRARWPELRALLTEAFASHDRDHWGAVFANSDACVTP  323

Query  303  VLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPA  349
            VLA+ E  N  H+  R+T   A+G  Q  PAPRFSRT +   RPP A
Sbjct  324  VLAFGEVHNEPHIIERNTFYEANGGWQPMPAPRFSRTASSQPRPPAA  370


>gi|312199516|ref|YP_004019577.1| L-carnitine dehydratase/bile acid-inducible protein F [Frankia 
sp. EuI1c]
 gi|311230852|gb|ADP83707.1| L-carnitine dehydratase/bile acid-inducible protein F [Frankia 
sp. EuI1c]
Length=380

 Score =  399 bits (1026),  Expect = 3e-109, Method: Compositional matrix adjust.
 Identities = 211/350 (61%), Positives = 255/350 (73%), Gaps = 7/350 (2%)

Query  5    GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRP---GGLTMPSEDRDLLHRGKRIV  61
            GPLAG++V+EL GIGPGPHA MVLADLGADVVRV RP   G +       D L RG+R V
Sbjct  10   GPLAGLRVVELAGIGPGPHAAMVLADLGADVVRVERPATGGAIPGAPATGDHLLRGRRSV  69

Query  62   DLDVKTQ--PQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQD  119
             LD+K     + +L L  +ADVL++ +RPG  ERLG+GPD C   NPRL++ R+TGWGQD
Sbjct  70   ALDLKDAAGKERLLALVERADVLIEGYRPGVAERLGVGPDVCLGRNPRLVYGRMTGWGQD  129

Query  120  GPLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERER  179
            GP A TAGHD+NY+S TG L A G  D  P+ PLNLV DFGGGSM +L G++ AL+ERER
Sbjct  130  GPWAHTAGHDLNYISVTGILHAIGPRDGKPVVPLNLVGDFGGGSMFLLTGVLAALWERER  189

Query  180  SGVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAV  239
            SG GQVVDAAMVDG SVLAQMMW  +  G   D+R + +LDGGAP+Y  Y  +DG+++AV
Sbjct  190  SGAGQVVDAAMVDGASVLAQMMWAWRATGFWSDERGTNVLDGGAPYYDTYVCADGRHVAV  249

Query  240  GAIEPQFFAALLSGLGLS-AADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDA  298
            GAIEPQF+AALL+GLGL+  A +P Q D AG+P +    A  F +RTRDEW  VF GTDA
Sbjct  250  GAIEPQFYAALLAGLGLTDDAALPRQNDRAGWPALRARLAATFLTRTRDEWAAVFDGTDA  309

Query  299  CVTPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRT-PAGPVRPP  347
            CVTPVL ++EA  + HL AR T++T  GVQQ APAPRFSRT PA P  PP
Sbjct  310  CVTPVLTFAEATTHPHLTARGTLMTLDGVQQPAPAPRFSRTVPAVPSAPP  359


>gi|325003304|ref|ZP_08124416.1| predicted acyl-CoA transferase/carnitine dehydratase [Pseudonocardia 
sp. P1]
Length=366

 Score =  399 bits (1025),  Expect = 4e-109, Method: Compositional matrix adjust.
 Identities = 208/338 (62%), Positives = 250/338 (74%), Gaps = 4/338 (1%)

Query  5    GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRP-GGLTMPSEDR-DLLHRGKRIVD  62
            GPLAG+KVIEL GIGPGPHA M+L DLGADVVR+ RP GG +  S D  D   RG+R V 
Sbjct  6    GPLAGLKVIELAGIGPGPHAAMILGDLGADVVRIDRPSGGFSPGSGDAPDPTVRGRRTVT  65

Query  63   LDVKTQP--QAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDG  120
             D+K     + +L L  KADVLL+ +RPG  ERLG+GPDDC + NPRL++ R+TGWGQDG
Sbjct  66   ADLKDPAGRETVLRLVEKADVLLEGYRPGVTERLGVGPDDCRTRNPRLVYGRMTGWGQDG  125

Query  121  PLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERS  180
            P+A  AGHDINY+S TGAL A G A   P+PPLNLV DFGGGSML+++G++ AL+E   S
Sbjct  126  PMAPRAGHDINYISMTGALHAIGRAGERPVPPLNLVGDFGGGSMLLVVGVLAALWEARAS  185

Query  181  GVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVG  240
            G GQVVDAAMVDGVSVL QM W   G G+  D+++S LLDG APFY  Y  +DG YMAVG
Sbjct  186  GEGQVVDAAMVDGVSVLNQMFWGFLGQGAWTDEKDSNLLDGHAPFYDTYACADGGYMAVG  245

Query  241  AIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACV  300
            A+EPQF+A LL+GL L+  ++  Q D AG+P M   F E FAS+ RDEW  VF GTDAC 
Sbjct  246  ALEPQFYAQLLAGLELTDDELGHQYDRAGWPAMRARFTEVFASKPRDEWAAVFEGTDACT  305

Query  301  TPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSR  338
            TPVL++ EAA + HL AR T++TA GV QAAPAPRFSR
Sbjct  306  TPVLSFGEAAEDAHLAARGTIVTADGVPQAAPAPRFSR  343


>gi|111222800|ref|YP_713594.1| alpha-methylacyl-CoA racemase [Frankia alni ACN14a]
 gi|111150332|emb|CAJ62029.1| Alpha-methylacyl-CoA racemase [Frankia alni ACN14a]
Length=368

 Score =  398 bits (1023),  Expect = 6e-109, Method: Compositional matrix adjust.
 Identities = 203/354 (58%), Positives = 253/354 (72%), Gaps = 3/354 (0%)

Query  2    TTGGPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIV  61
            +  GPLAG++V+EL GIGPGPHA M+LADLGADVVRV RPG +  P    + + RG+R+V
Sbjct  6    SAAGPLAGIRVVELAGIGPGPHAAMMLADLGADVVRVARPGSVPAPGVPAEPVQRGRRLV  65

Query  62   DLDV--KTQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQD  119
            + D+        +L+L A ADVL++ FRPG  ERLG+GPDDCA  NPRL++ R+TGWGQ 
Sbjct  66   EADLGDPASRDGVLDLIAGADVLIEGFRPGVTERLGLGPDDCARRNPRLVYGRMTGWGQQ  125

Query  120  GPLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERER  179
            GPLA   GHDINYLS TG L A G A  PP+PPLNLV DFGGGS  +++GI+ AL ERER
Sbjct  126  GPLADRVGHDINYLSITGVLNAVGRAGEPPLPPLNLVGDFGGGSTYLVVGILAALVERER  185

Query  180  SGVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAV  239
            SG GQV+DAA+VDG S+LA M+W ++G G   D+R S  LD GAPFY  Y T+DG+YMAV
Sbjct  186  SGRGQVIDAAIVDGASLLAHMVWGLRGRGRWNDERGSNRLDTGAPFYDVYATADGRYMAV  245

Query  240  GAIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDAC  299
            GA+EP+F+A  ++GLGL  A +P Q D A +P++ + F + FA RTRDEW  VF   DAC
Sbjct  246  GALEPRFYATFVTGLGLDPATLPGQDDRARWPELREAFTKAFAGRTRDEWAAVFDPLDAC  305

Query  300  VTPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRT-PAGPVRPPPAAAT  352
            VTPVL + EA  + H+ AR  +I   GV Q APAPRFSR+ PA P  PP  A T
Sbjct  306  VTPVLDFDEATAHPHMAAREVLIDVAGVTQPAPAPRFSRSVPAAPRVPPRTAVT  359


>gi|312197060|ref|YP_004017121.1| L-carnitine dehydratase/bile acid-inducible protein F [Frankia 
sp. EuI1c]
 gi|311228396|gb|ADP81251.1| L-carnitine dehydratase/bile acid-inducible protein F [Frankia 
sp. EuI1c]
Length=360

 Score =  398 bits (1023),  Expect = 6e-109, Method: Compositional matrix adjust.
 Identities = 209/355 (59%), Positives = 257/355 (73%), Gaps = 6/355 (1%)

Query  5    GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIVDLD  64
            GPL G++V+EL G+GPGPHAGM+LADLGADVV V RP      + D D L RG+   +LD
Sbjct  3    GPLTGLRVLELAGLGPGPHAGMILADLGADVVHVSRP---HEQAPDSDFLLRGRTATELD  59

Query  65   VKTQP--QAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPL  122
            +K+       L LAA ADVL+D FRPG  ERLG+GP  C + NPRL++ARITGWGQDGPL
Sbjct  60   LKSPAGRDRALALAAGADVLIDPFRPGVLERLGLGPAACLAANPRLVYARITGWGQDGPL  119

Query  123  ASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGV  182
            A+ AGHDINY++ TG L A G+A   P+PPLNLV DFGGGSM +L+GI+ AL+ERERSG 
Sbjct  120  AARAGHDINYIALTGVLNAIGHAGDRPVPPLNLVGDFGGGSMFLLVGILAALWERERSGA  179

Query  183  GQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAI  242
            GQVVDAAMVDGVSVL+QM+W+ +  G   D+R +  LD GAP+Y  YE +DG+Y+AVGA+
Sbjct  180  GQVVDAAMVDGVSVLSQMIWSFRADGRWSDRRGTNALDSGAPYYDTYECADGRYVAVGAV  239

Query  243  EPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTP  302
            EP+F+A LL GLGL+AAD+P Q D AG+P + D  A  F SR RDEW  VFA  DACVTP
Sbjct  240  EPKFYAQLLDGLGLAAADLPAQRDRAGWPLLRDRIAAAFRSRGRDEWAVVFADRDACVTP  299

Query  303  VLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRT-PAGPVRPPPAAATPIDE  356
            VL+++EA ++  L  R T     G  Q APAPRFSR+ PA P RP  A A  I +
Sbjct  300  VLSFAEAPDHPQLATRRTFAPVAGDLQPAPAPRFSRSAPAAPSRPRRAGADAIAQ  354


>gi|118473757|ref|YP_889430.1| alpha-methylacyl-CoA racemase [Mycobacterium smegmatis str. MC2 
155]
 gi|118175044|gb|ABK75940.1| alpha-methylacyl-CoA racemase, putative [Mycobacterium smegmatis 
str. MC2 155]
Length=363

 Score =  398 bits (1023),  Expect = 6e-109, Method: Compositional matrix adjust.
 Identities = 199/348 (58%), Positives = 253/348 (73%), Gaps = 5/348 (1%)

Query  5    GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPG-GLTMPSEDRDLLHRGKRIVDL  63
            GPL G++V+EL GIGPGPHA M+L DLGADVVR+ RPG G  +P+ DRD + R +R V  
Sbjct  3    GPLQGLRVVELAGIGPGPHAAMILGDLGADVVRIERPGKGGGVPAGDRDAMLRNRRSVVA  62

Query  64   DVKTQPQA---MLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDG  120
            D+K  P+    +L+L AKADVL++ +RPG  ERLG+GP+DCA VN RLI+AR+TGWGQDG
Sbjct  63   DLKA-PEGRDLVLQLVAKADVLIEGYRPGVTERLGLGPEDCAKVNERLIYARMTGWGQDG  121

Query  121  PLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERS  180
            P A  AGHDINY+S  G L A G     P+PPLNL  DFGGGSM +L+GI+ ALYER+ S
Sbjct  122  PRALQAGHDINYISLNGTLHAVGRKGGRPVPPLNLAGDFGGGSMFLLVGILSALYERQAS  181

Query  181  GVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVG  240
            G GQV+DAAMVDG +VL +MMW+ +  G   D+R + +LD GAP+Y  YET+DGKY+AVG
Sbjct  182  GKGQVIDAAMVDGSAVLMEMMWSFRANGMWSDERGTNMLDTGAPYYDTYETADGKYIAVG  241

Query  241  AIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACV  300
            AIEPQF+A LL GLGL  AD+P Q D++ +P++ + FA+ FA+  R  WT+VF GTDAC 
Sbjct  242  AIEPQFYAELLKGLGLDGADLPAQNDISRWPELREAFAKAFAAHDRAHWTKVFEGTDACT  301

Query  301  TPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPP  348
            TPVL+++E  +  H+  R+T     G  Q  PAPRFSRT  G   PPP
Sbjct  302  TPVLSFAEVLDEPHVAERNTFYDDEGNLQPMPAPRFSRTQPGRPTPPP  349


>gi|41408736|ref|NP_961572.1| Mcr [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41397094|gb|AAS04955.1| Mcr [Mycobacterium avium subsp. paratuberculosis K-10]
Length=360

 Score =  398 bits (1022),  Expect = 8e-109, Method: Compositional matrix adjust.
 Identities = 204/352 (58%), Positives = 252/352 (72%), Gaps = 13/352 (3%)

Query  5    GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRP----GGLTMPSEDRDLLHRGKRI  60
            GPL G++V+EL GIGPGPHA M+L DLGADVVR+ RP    GG+      +D + R +RI
Sbjct  3    GPLQGLRVVELSGIGPGPHAAMILGDLGADVVRIDRPSGAPGGVV-----KDAMSRNRRI  57

Query  61   VDLDVKTQP--QAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQ  118
            V  D+K+    + +L+L AKADVL++ +RPG  ERLG+GP DCA VN RLI+AR+TGWGQ
Sbjct  58   VTADLKSDQGRELVLKLVAKADVLIEGYRPGVTERLGLGPQDCAKVNDRLIYARMTGWGQ  117

Query  119  DGPLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERE  178
             GP +  AGHDINY+S  G L A G A+  P+PPLNLV DFGGGSM +LLGI+ AL+ER+
Sbjct  118  TGPRSQQAGHDINYISLNGILHAIGRANERPVPPLNLVGDFGGGSMFLLLGILSALWERQ  177

Query  179  RSGVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMA  238
             SG GQVVDAAMVDG SVL QMMW M+  G   D R + LLDGGAP+Y  YE +DG+Y+A
Sbjct  178  SSGKGQVVDAAMVDGSSVLVQMMWQMRASGMWTDARGTNLLDGGAPYYDTYECADGRYVA  237

Query  239  VGAIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDA  298
            VGAIEPQF+AA+L+GLGL  AD+P Q DV+ +P++     E+FASR RD W +VFA +DA
Sbjct  238  VGAIEPQFYAAMLAGLGLDGADLPGQNDVSRWPELRAALTEKFASRDRDHWAKVFADSDA  297

Query  299  CVTPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAA  350
            CVTPVLA+ E     H+  R+T     G  Q  PAPRFSRT   P  P PAA
Sbjct  298  CVTPVLAFGEVQTEPHITERNTFYEVDGGLQPLPAPRFSRT--APQTPRPAA  347


>gi|340626158|ref|YP_004744610.1| putative alpha-methylacyl-CoA racemase MCR [Mycobacterium canettii 
CIPT 140010059]
 gi|340004348|emb|CCC43491.1| putative alpha-methylacyl-CoA racemase MCR (2-methylacyl-CoA 
racemase) (2-arylpropionyl-CoA epimerase) [Mycobacterium canettii 
CIPT 140010059]
Length=360

 Score =  398 bits (1022),  Expect = 8e-109, Method: Compositional matrix adjust.
 Identities = 200/347 (58%), Positives = 251/347 (73%), Gaps = 4/347 (1%)

Query  5    GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIVDLD  64
            GPL+G++V+EL GIGPGPHA M+L DLGADVVR+ RP  +   S  RD + R +RIV  D
Sbjct  3    GPLSGLRVVELAGIGPGPHAAMILGDLGADVVRIDRPSSVDGIS--RDAMLRNRRIVTAD  60

Query  65   VKTQP--QAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPL  122
            +K+    +  L+L AKADVL++ +RPG  ERLG+GP++CA VN RLI+AR+TGWGQ GP 
Sbjct  61   LKSDQGLELALKLIAKADVLIEGYRPGVTERLGLGPEECAKVNDRLIYARMTGWGQTGPR  120

Query  123  ASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGV  182
            +  AGHDINY+S  G L A G  D  P+PPLNLV DFGGGSM +L+GI+ AL+ER+ SG 
Sbjct  121  SQQAGHDINYISLNGILHAIGRGDERPVPPLNLVGDFGGGSMFLLVGILAALWERQSSGK  180

Query  183  GQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAI  242
            GQVVDAAMVDG SVL QMMW M+  G   D R + +LDGGAP+Y  YE +DG+Y+AVGAI
Sbjct  181  GQVVDAAMVDGSSVLIQMMWAMRATGMWTDTRGANMLDGGAPYYDTYECADGRYVAVGAI  240

Query  243  EPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTP  302
            EPQF+AA+L+GLGL AA++P Q D A +P++  +  E FA   RD W  VFA +DACVTP
Sbjct  241  EPQFYAAMLAGLGLDAAELPPQNDRARWPELRALLTEAFARHDRDHWGAVFANSDACVTP  300

Query  303  VLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPA  349
            VLA+ E  N  H+  R+T   A+G  Q  PAPRFSRT +   RPP A
Sbjct  301  VLAFGEVHNEPHIIERNTFYEANGGWQPMPAPRFSRTASSQPRPPAA  347


>gi|118462940|ref|YP_880529.1| Mcr protein [Mycobacterium avium 104]
 gi|254774160|ref|ZP_05215676.1| Mcr [Mycobacterium avium subsp. avium ATCC 25291]
 gi|118164227|gb|ABK65124.1| Mcr protein [Mycobacterium avium 104]
Length=360

 Score =  398 bits (1022),  Expect = 9e-109, Method: Compositional matrix adjust.
 Identities = 204/352 (58%), Positives = 252/352 (72%), Gaps = 13/352 (3%)

Query  5    GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRP----GGLTMPSEDRDLLHRGKRI  60
            GPL G++V+EL GIGPGPHA M+L DLGADVVR+ RP    GG+      +D + R +RI
Sbjct  3    GPLQGLRVVELSGIGPGPHAAMILGDLGADVVRIDRPSGAPGGVV-----KDAMSRNRRI  57

Query  61   VDLDVKTQP--QAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQ  118
            V  D+K+    + +L+L AKADVL++ +RPG  ERLG+GP DCA VN RLI+AR+TGWGQ
Sbjct  58   VTADLKSDQGRELVLKLVAKADVLIEGYRPGVTERLGLGPQDCAKVNDRLIYARMTGWGQ  117

Query  119  DGPLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERE  178
             GP +  AGHDINY+S  G L A G A+  P+PPLNLV DFGGGSM +LLGI+ AL+ER+
Sbjct  118  TGPRSQQAGHDINYISLNGILHAIGRANERPVPPLNLVGDFGGGSMFLLLGILSALWERQ  177

Query  179  RSGVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMA  238
             SG GQVVDAAMVDG SVL QMMW M+  G   D R + LLDGGAP+Y  YE +DG+Y+A
Sbjct  178  SSGKGQVVDAAMVDGSSVLVQMMWQMRASGMWTDARGTNLLDGGAPYYDTYECADGRYVA  237

Query  239  VGAIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDA  298
            VGAIEPQF+AA+L+GLGL  AD+P Q DV+ +P++     E+FASR RD W +VFA +DA
Sbjct  238  VGAIEPQFYAAMLAGLGLDGADLPGQNDVSRWPELRAALTEKFASRDRDHWAKVFADSDA  297

Query  299  CVTPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAA  350
            CVTPVLA+ E     H+  R+T     G  Q  PAPRFSRT   P  P PAA
Sbjct  298  CVTPVLAFGEVQTEPHITERNTFYEVDGGLQPLPAPRFSRT--APETPRPAA  347


>gi|336458775|gb|EGO37735.1| putative acyl-CoA transferase/carnitine dehydratase [Mycobacterium 
avium subsp. paratuberculosis S397]
Length=360

 Score =  397 bits (1021),  Expect = 1e-108, Method: Compositional matrix adjust.
 Identities = 203/352 (58%), Positives = 252/352 (72%), Gaps = 13/352 (3%)

Query  5    GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRP----GGLTMPSEDRDLLHRGKRI  60
            GPL G++V+EL GIGPGPHA M+L DLGADVVR+ RP    GG+      +D + R +RI
Sbjct  3    GPLQGLRVVELSGIGPGPHAAMILGDLGADVVRIDRPSGAPGGVV-----KDAMSRNRRI  57

Query  61   VDLDVKTQP--QAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQ  118
            V  D+K+    + +L+L AKADVL++ +RPG  ERLG+GP DCA VN RLI+AR+TGWGQ
Sbjct  58   VTADLKSDQGRELVLKLVAKADVLIEGYRPGVTERLGLGPQDCAKVNDRLIYARMTGWGQ  117

Query  119  DGPLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERE  178
             GP +  AGHDINY+S  G L A G A+  P+PPLNLV DFGGGSM ++LGI+ AL+ER+
Sbjct  118  TGPRSQQAGHDINYISLNGILHAIGRANERPVPPLNLVGDFGGGSMFLMLGILSALWERQ  177

Query  179  RSGVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMA  238
             SG GQVVDAAMVDG SVL QMMW M+  G   D R + LLDGGAP+Y  YE +DG+Y+A
Sbjct  178  SSGKGQVVDAAMVDGSSVLVQMMWQMRASGMWTDARGTNLLDGGAPYYDTYECADGRYVA  237

Query  239  VGAIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDA  298
            VGAIEPQF+AA+L+GLGL  AD+P Q DV+ +P++     E+FASR RD W +VFA +DA
Sbjct  238  VGAIEPQFYAAMLAGLGLDGADLPGQNDVSRWPELRAALTEKFASRDRDHWAKVFADSDA  297

Query  299  CVTPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAA  350
            CVTPVLA+ E     H+  R+T     G  Q  PAPRFSRT   P  P PAA
Sbjct  298  CVTPVLAFGEVQTEPHITERNTFYEVDGGLQPLPAPRFSRT--APQTPRPAA  347


>gi|226365035|ref|YP_002782818.1| alpha-methylacyl-CoA racemase [Rhodococcus opacus B4]
 gi|226243525|dbj|BAH53873.1| alpha-methylacyl-CoA racemase [Rhodococcus opacus B4]
Length=365

 Score =  395 bits (1015),  Expect = 6e-108, Method: Compositional matrix adjust.
 Identities = 204/355 (58%), Positives = 258/355 (73%), Gaps = 3/355 (0%)

Query  5    GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIVDLD  64
            GPLAG++V+E  G+GPGPHA  +LADLGADVV V+RPG +  P    D + RG+R+V+ +
Sbjct  10   GPLAGIRVVEFAGLGPGPHAAALLADLGADVVCVQRPG-VIPPDGPYDQIQRGRRVVEAN  68

Query  65   VK--TQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPL  122
            +K   Q + +L L  +ADV+++ FRPG  ER+G+GPD C   N RL++ R+TGWGQ+GPL
Sbjct  69   LKDPEQVEKVLGLIERADVVIEGFRPGVTERMGLGPDVCLKRNERLVYGRMTGWGQEGPL  128

Query  123  ASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGV  182
            AS AGHDINY+S TG L A G     P+PPLN+V DFGGGSM ++ GI+ AL ER+ SG 
Sbjct  129  ASAAGHDINYISLTGVLHAIGRKGERPVPPLNMVGDFGGGSMFLIFGILSALVERQSSGK  188

Query  183  GQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAI  242
            GQVVDAAMVDG   L+ MMW  +G G   D+R   LLD GAPFY  YETSDGKYMAVG+I
Sbjct  189  GQVVDAAMVDGALALSHMMWAFRGRGVWSDERGVNLLDTGAPFYDTYETSDGKYMAVGSI  248

Query  243  EPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTP  302
            EPQF+A LL GL L  A++P Q+D++ +PQM  +FAE+F S+TRDEW  VF GTDACV+P
Sbjct  249  EPQFYALLLQGLELDPAELPQQMDMSAWPQMKKVFAEKFLSKTRDEWAAVFLGTDACVSP  308

Query  303  VLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEI  357
            VL ++EA +N+HL AR ++I   GV Q APAPRFSRTPAG   PP      ID +
Sbjct  309  VLTFAEAPSNEHLAARGSLIELDGVTQHAPAPRFSRTPAGAPTPPAREGVDIDTV  363


>gi|342861757|ref|ZP_08718403.1| Mcr [Mycobacterium colombiense CECT 3035]
 gi|342130891|gb|EGT84187.1| Mcr [Mycobacterium colombiense CECT 3035]
Length=360

 Score =  395 bits (1014),  Expect = 7e-108, Method: Compositional matrix adjust.
 Identities = 201/358 (57%), Positives = 257/358 (72%), Gaps = 15/358 (4%)

Query  5    GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRP----GGLTMPSEDRDLLHRGKRI  60
            GPL G++V+EL GIGPGPHA M+L DLGADVVR+ RP    GG+      +D + R +R+
Sbjct  3    GPLKGLRVVELAGIGPGPHAAMILGDLGADVVRIDRPSSGPGGVA-----KDAMMRNRRV  57

Query  61   VDLDVKTQPQA--MLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQ  118
            V  D+K+      +L+L AKADVL++ +RPG  ERLG+GP+DCA VN RL++AR+TGWGQ
Sbjct  58   VTADLKSDEGRGLVLKLIAKADVLIEGYRPGVTERLGLGPEDCAKVNDRLVYARMTGWGQ  117

Query  119  DGPLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERE  178
             GP +  AGHDINY+S  G L + G A+  P+PPLNLV DFGGGSM +LLGI+ AL+ER+
Sbjct  118  TGPRSQQAGHDINYISLNGILHSIGRANERPVPPLNLVGDFGGGSMFLLLGILSALWERQ  177

Query  179  RSGVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMA  238
             SG GQVVDAAMVDG SVL QMMW M+  G   D R + LLDGGAP+Y  YE +DG+Y+A
Sbjct  178  TSGKGQVVDAAMVDGSSVLVQMMWQMRASGMWTDARGTNLLDGGAPYYDTYECADGRYVA  237

Query  239  VGAIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDA  298
            VGAIEPQF+AA+L+GLGL  AD+P Q DV+ +P++  +  E+FAS+ RD W +VFA +DA
Sbjct  238  VGAIEPQFYAAMLAGLGLDGADLPGQNDVSRWPELRAVLTEKFASQDRDHWAKVFADSDA  297

Query  299  CVTPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDE  356
            CVTP+LA+ E     H+  R+T     G  Q  PAPRFSRT   P  P PAA  P+D+
Sbjct  298  CVTPILAFGEVLTEPHITERNTFYEVDGGLQPLPAPRFSRT--APETPRPAA--PVDD  351


>gi|229492996|ref|ZP_04386791.1| alpha-methylacyl-CoA racemase [Rhodococcus erythropolis SK121]
 gi|229320026|gb|EEN85852.1| alpha-methylacyl-CoA racemase [Rhodococcus erythropolis SK121]
Length=366

 Score =  395 bits (1014),  Expect = 7e-108, Method: Compositional matrix adjust.
 Identities = 196/359 (55%), Positives = 252/359 (71%), Gaps = 2/359 (0%)

Query  1    VTTGGPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRI  60
            V   GPLAG++++E  G+GPGPHA  +LAD+GAD+V V+R G +   S   D   RG+RI
Sbjct  6    VEKKGPLAGIRIVEFAGLGPGPHAATLLADMGADIVIVQRAGQIPQDSNATDQTKRGRRI  65

Query  61   VDLDVK--TQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQ  118
            V+ ++K       +L+L  +ADVL++ FRPG  ER+G+GPD  +  NPRL++AR+TGWGQ
Sbjct  66   VEANLKDPADVAKVLDLLGRADVLIEGFRPGVMERMGLGPDVVSERNPRLVYARMTGWGQ  125

Query  119  DGPLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERE  178
            +GPLA+ AGHDINY+S TG L A G     P+PPLN+V DFGGGSM ++ GI+ AL ER 
Sbjct  126  EGPLANAAGHDINYISLTGVLNAIGRKGERPVPPLNMVGDFGGGSMFLIFGILSALVERS  185

Query  179  RSGVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMA  238
             SG GQVVDAAMVDG   L+ MMW  +G G   D+R   LLD GAPFY  YETSDGKYMA
Sbjct  186  TSGKGQVVDAAMVDGTLALSHMMWAFRGRGVWSDERGVNLLDTGAPFYDTYETSDGKYMA  245

Query  239  VGAIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDA  298
            VG+IEPQF+A LL GL L  A +P Q+D + +  M  +F E+F S+TRDEW ++F GTDA
Sbjct  246  VGSIEPQFYALLLEGLELDPATLPHQMDTSKWDDMKKLFTEKFLSKTRDEWAKIFLGTDA  305

Query  299  CVTPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEI  357
            CV+PVL ++EA +N+H+ AR ++I   GV Q APAPRFSRTP      P   AT ID +
Sbjct  306  CVSPVLTFAEAPSNEHIAARGSLIELDGVTQHAPAPRFSRTPTTTPAAPAREATDIDTV  364


>gi|226304922|ref|YP_002764880.1| alpha-methylacyl-CoA racemase [Rhodococcus erythropolis PR4]
 gi|226184037|dbj|BAH32141.1| probable alpha-methylacyl-CoA racemase [Rhodococcus erythropolis 
PR4]
Length=361

 Score =  394 bits (1012),  Expect = 1e-107, Method: Compositional matrix adjust.
 Identities = 195/355 (55%), Positives = 252/355 (71%), Gaps = 2/355 (0%)

Query  5    GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIVDLD  64
            GPLAG++++E  G+GPGPHA  +LAD+GAD+V V+R G +   S   D + RG+RIV+ +
Sbjct  5    GPLAGIRIVEFAGLGPGPHAATLLADMGADIVIVQRAGQIPQDSNATDQIKRGRRIVEAN  64

Query  65   VK--TQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPL  122
            +K       +L+L  +ADVL++ FRPG  ER+G+GPD  +  NPRL++AR+TGWGQ+GPL
Sbjct  65   LKDPADVAKVLDLLGRADVLIEGFRPGVMERMGLGPDVVSERNPRLVYARMTGWGQEGPL  124

Query  123  ASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGV  182
            A+ AGHDINY+S TG L A G     P+PPLN+V DFGGGSM ++ GI+ AL ER  SG 
Sbjct  125  ANAAGHDINYISLTGVLNAIGRKGERPVPPLNMVGDFGGGSMFLIFGILSALVERSTSGK  184

Query  183  GQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAI  242
            GQVVDAAMVDG   L+ MMW  +G G   D+R   LLD GAPFY  YETSDGKYMAVG+I
Sbjct  185  GQVVDAAMVDGTLALSHMMWAFRGRGVWSDERGVNLLDTGAPFYDTYETSDGKYMAVGSI  244

Query  243  EPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTP  302
            EPQF+A LL GL L  A +P Q+D + +  M  +F E+F S+TRDEW ++F GTDACV+P
Sbjct  245  EPQFYALLLEGLELDPATLPHQMDTSKWDDMKTLFTEKFLSKTRDEWAKIFLGTDACVSP  304

Query  303  VLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEI  357
            VL ++EA +N+H+ AR ++I   GV Q APAPRFSRTP      P   AT ID +
Sbjct  305  VLTFAEAPSNEHIAARGSLIELDGVTQHAPAPRFSRTPTATPAAPAREATDIDTV  359


>gi|111022523|ref|YP_705495.1| alpha-methylacyl-CoA racemase [Rhodococcus jostii RHA1]
 gi|110822053|gb|ABG97337.1| alpha-methylacyl-CoA racemase [Rhodococcus jostii RHA1]
Length=365

 Score =  394 bits (1012),  Expect = 1e-107, Method: Compositional matrix adjust.
 Identities = 202/355 (57%), Positives = 258/355 (73%), Gaps = 3/355 (0%)

Query  5    GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIVDLD  64
            GPLAG++V+E  G+GPGPHA  +LADLGADVV V+RPG +  P    D + RG+R+V+ +
Sbjct  10   GPLAGIRVVEFAGLGPGPHAAALLADLGADVVCVQRPG-VIPPDGPYDQIQRGRRVVEAN  68

Query  65   VK--TQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPL  122
            +K   Q + +L L  +ADV+++ FRPG  ER+G+GPD C   N RL++ R+TGWGQ+GPL
Sbjct  69   LKDPEQVEKVLGLIERADVVIEGFRPGVTERMGLGPDVCLGRNERLVYGRMTGWGQEGPL  128

Query  123  ASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGV  182
            AS AGHDINY+S TG L A G     P+PPLN+V DFGGGSM ++ GI+ AL ER+ SG 
Sbjct  129  ASAAGHDINYISLTGVLHAIGRKGERPVPPLNMVGDFGGGSMFLIFGILSALVERQTSGK  188

Query  183  GQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAI  242
            GQVVDAAMVDG   L+ MMW  +G G   D+R   LLD GAPFY  YETSDGKYMAVG+I
Sbjct  189  GQVVDAAMVDGALALSHMMWAFRGRGVWSDERGVNLLDTGAPFYDTYETSDGKYMAVGSI  248

Query  243  EPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTP  302
            EPQF+A LL GL L  A++P Q+D++ +PQM  +FAE+F S+TRDEW  +F GTDACV+P
Sbjct  249  EPQFYALLLQGLELDPAELPQQMDISAWPQMKKVFAEKFLSKTRDEWAAIFLGTDACVSP  308

Query  303  VLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEI  357
            VL ++EA +N+H+ AR ++I   GV Q APAPRFSRTPAG   PP      ID +
Sbjct  309  VLTFAEAPSNEHIAARGSLIDLDGVTQHAPAPRFSRTPAGAPTPPAREGVDIDTV  363


>gi|226349943|ref|YP_002777056.1| alpha-methylacyl-CoA racemase [Rhodococcus opacus B4]
 gi|226245858|dbj|BAH47125.1| alpha-methylacyl-CoA racemase [Rhodococcus opacus B4]
Length=365

 Score =  392 bits (1006),  Expect = 6e-107, Method: Compositional matrix adjust.
 Identities = 201/355 (57%), Positives = 257/355 (73%), Gaps = 3/355 (0%)

Query  5    GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIVDLD  64
            GPLAG++V+E  G+GPGPHA  +LADLGADVV V+RPG +  P    D + RG+R+V+ +
Sbjct  10   GPLAGIRVVEFAGLGPGPHAAALLADLGADVVCVQRPG-VIPPDGPYDQIQRGRRVVEAN  68

Query  65   VK--TQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPL  122
            +K   Q + +L L  +ADV+++ FRPG  ER+G+GPD C   N RL++ R+TGWGQ+GPL
Sbjct  69   LKDPEQVEKVLGLIERADVVIEGFRPGVTERMGLGPDVCLERNERLVYGRMTGWGQEGPL  128

Query  123  ASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGV  182
            A  AGHDINY+S TG L A G     P+PPLN+V DFGGGSM ++ GI+ AL ER+ SG 
Sbjct  129  AGAAGHDINYISLTGVLHAIGRKGERPVPPLNMVGDFGGGSMFLIFGILSALVERQTSGK  188

Query  183  GQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAI  242
            GQVVDAAMVDG   L+ MMW  +G G   D+R   LLD GAPFY  YETSDGKYMAVG+I
Sbjct  189  GQVVDAAMVDGALALSHMMWAFRGRGVWSDERGVNLLDTGAPFYDTYETSDGKYMAVGSI  248

Query  243  EPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTP  302
            EPQF+A LL GL L  A++P Q+DV+ +PQM  +FAE+F S+TRDEW  +F GTDACV+P
Sbjct  249  EPQFYALLLQGLELDPAELPQQMDVSAWPQMKKVFAEKFLSKTRDEWAAIFLGTDACVSP  308

Query  303  VLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEI  357
            VL ++EA +N+H+ AR +++   GV Q APAPRFSRTPAG   PP      ID +
Sbjct  309  VLTFAEAPSNEHIAARGSLVDLDGVTQHAPAPRFSRTPAGAPTPPAREGVDIDTV  363


>gi|54312031|dbj|BAD66657.1| alpha-Methylacyl-CoA racemase [Mycobacterium sp. P101]
Length=360

 Score =  391 bits (1005),  Expect = 9e-107, Method: Compositional matrix adjust.
 Identities = 193/348 (56%), Positives = 242/348 (70%), Gaps = 1/348 (0%)

Query  5    GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIVDLD  64
            GPL G++V+EL GIGPGPHA M+L DLGADVVRV RP     P++D  L +R     DL 
Sbjct  3    GPLHGLRVVELAGIGPGPHAAMILGDLGADVVRVDRPTASNSPAKDAMLRNRRSVTADLK  62

Query  65   VKTQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPLAS  124
                 Q +L+L AKADVL++ FRPG  ERLG+GP+DCA VN +L++AR+TGWGQDGP A 
Sbjct  63   SAEGKQFVLDLVAKADVLIEGFRPGVTERLGLGPEDCAKVNEKLVYARMTGWGQDGPRAL  122

Query  125  TAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGVGQ  184
             AGHDINY+S  G L A G     P+PPLNL  DFGGGSM +LLGI+ AL+ER+ SG GQ
Sbjct  123  QAGHDINYISLNGVLHAIGRKGEKPVPPLNLAGDFGGGSMFLLLGILSALFERQTSGKGQ  182

Query  185  VVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAIEP  244
            VVDAAM+DG SVL QMMW+ +  G   D+R + +LD GAP+Y  YET+DGK+ A+GAIEP
Sbjct  183  VVDAAMIDGSSVLIQMMWSFRSQGLWSDERGTNMLDTGAPYYDTYETADGKHFAIGAIEP  242

Query  245  QFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTPVL  304
            QF+A LL+ LGL  A++P Q D+A + ++   F E F ++TRDEW ++FAG+DAC TPVL
Sbjct  243  QFYAELLAKLGLDQAELPGQNDMARWEELRTTFTEVFKTKTRDEWAQIFAGSDACATPVL  302

Query  305  AWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRT-PAGPVRPPPAAA  351
            A+ E     H+  R T        Q  PAPRFSR+ P  P RPP   A
Sbjct  303  AFGEVLTEPHVAERDTFYETGSGLQPMPAPRFSRSRPGQPTRPPVVGA  350


>gi|254820698|ref|ZP_05225699.1| Mcr [Mycobacterium intracellulare ATCC 13950]
Length=360

 Score =  390 bits (1003),  Expect = 1e-106, Method: Compositional matrix adjust.
 Identities = 200/356 (57%), Positives = 252/356 (71%), Gaps = 15/356 (4%)

Query  5    GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRP----GGLTMPSEDRDLLHRGKRI  60
            GPL G++V+EL GIGPGPHA M+L DLGADVVR+ RP    GG+      +D + R +R+
Sbjct  3    GPLKGLRVVELAGIGPGPHAAMILGDLGADVVRIDRPSSGPGGVA-----KDAMMRNRRV  57

Query  61   VDLDVKTQPQA--MLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQ  118
            V  D+K+      +L+L AKADVL++ +RPG  ERLG+GP+DCA VN RL++AR+TGWGQ
Sbjct  58   VTADLKSDEGRGLVLKLIAKADVLIEGYRPGVTERLGLGPEDCAKVNDRLVYARMTGWGQ  117

Query  119  DGPLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERE  178
             GP +  AGHDINY+S  G L + G  +  P+PPLNLV DFGGGSM +LLGI+ AL+ER+
Sbjct  118  TGPRSQQAGHDINYISLNGILHSIGRVNERPVPPLNLVGDFGGGSMFLLLGILSALWERQ  177

Query  179  RSGVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMA  238
             SG GQVVDAAMVDG SVL QMMW M+  G   D R + LLDGGAP+Y  YE +DG+Y+A
Sbjct  178  TSGKGQVVDAAMVDGSSVLVQMMWQMRSSGMWTDARGTNLLDGGAPYYDTYECADGRYVA  237

Query  239  VGAIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDA  298
            VGAIEPQF+AA+L+GLGL  AD+P Q DV  +P++  +  E+FAS+ RD W +VFA +DA
Sbjct  238  VGAIEPQFYAAMLAGLGLDGADLPGQNDVGRWPELRAVLTEKFASQDRDHWAKVFADSDA  297

Query  299  CVTPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPI  354
            CVTPVLA+ E     H+  R T     G  Q  PAPRFSRT   P  P P  ATP+
Sbjct  298  CVTPVLAFGEVQTEPHITERDTFYEVDGGLQPRPAPRFSRT--APETPRP--ATPV  349


>gi|326384845|ref|ZP_08206520.1| alpha-methylacyl-CoA racemase [Gordonia neofelifaecis NRRL B-59395]
 gi|326196364|gb|EGD53563.1| alpha-methylacyl-CoA racemase [Gordonia neofelifaecis NRRL B-59395]
Length=369

 Score =  388 bits (997),  Expect = 7e-106, Method: Compositional matrix adjust.
 Identities = 197/347 (57%), Positives = 248/347 (72%), Gaps = 6/347 (1%)

Query  5    GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIVDLD  64
            GPLAG++VIE  GIGPGPHA M+LADLGADV+RV+RPG L  P+ + D L RG+R+++ +
Sbjct  13   GPLAGIRVIEFAGIGPGPHAAMLLADLGADVLRVQRPGQLPDPNRNADALLRGRRMIEAN  72

Query  65   VKT--QPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPL  122
            +K     + +L L AKADV+++ FRPG  ERLG GPDD  +VNP L++ R+TGWGQDGP 
Sbjct  73   LKNPADRETILNLVAKADVVIEGFRPGVMERLGFGPDDLHAVNPALVYGRMTGWGQDGPR  132

Query  123  ASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGV  182
            A  AGHD+NY+S TG L A G  D  P PPLNLV DFGGGSM +++G++ AL ER  SG 
Sbjct  133  AELAGHDMNYISLTGMLHAIGRPDEKPTPPLNLVGDFGGGSMFLVMGVLAALVERSVSGK  192

Query  183  GQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAI  242
            G V+DAAM DG SVL QMMW  +G G  +D+R   LLD GAPFY  YETSDGK+MAVGAI
Sbjct  193  GDVIDAAMCDGASVLGQMMWAFRGTGLWQDRRGVNLLDTGAPFYEVYETSDGKWMAVGAI  252

Query  243  EPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTP  302
            EPQF+A LL GL L    +P QLDV  + ++   F + F ++TRDEW  +F GTDAC +P
Sbjct  253  EPQFYAELLKGLELDPESLPNQLDVTKWGELKQTFTDTFKTKTRDEWAAIFDGTDACTSP  312

Query  303  VLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSR----TPAGPVR  345
            +L ++EA  + HL AR T++   GV QA  APRF+R    TP GPVR
Sbjct  313  ILDYTEAPADPHLAARGTLVEIDGVMQAQVAPRFARSATETPTGPVR  359


>gi|288924215|ref|ZP_06418249.1| L-carnitine dehydratase/bile acid-inducible protein F [Frankia 
sp. EUN1f]
 gi|288344440|gb|EFC78935.1| L-carnitine dehydratase/bile acid-inducible protein F [Frankia 
sp. EUN1f]
Length=373

 Score =  385 bits (990),  Expect = 4e-105, Method: Compositional matrix adjust.
 Identities = 203/352 (58%), Positives = 253/352 (72%), Gaps = 8/352 (2%)

Query  5    GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIVDLD  64
            GPL G++V+EL GIGPGPHA M+LADLGADVVRV RP      S +R+ L RG+R V  D
Sbjct  2    GPLTGLRVLELAGIGPGPHAAMILADLGADVVRVDRPA-----STEREPLLRGRRSVIAD  56

Query  65   VKTQP--QAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPL  122
            +KT    + +L L AKAD+L++ +RPG  ERLG+GP +C +VNPRLI+ R+TGWGQDGP 
Sbjct  57   LKTDAGRELVLRLVAKADILIEGYRPGVAERLGVGPAECQAVNPRLIYGRMTGWGQDGPW  116

Query  123  ASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGV  182
            A  AGHDINY+S TG L A G A   P+PPLNL  DFGGGSM ++ G++ AL+ERERSG+
Sbjct  117  ARQAGHDINYISLTGILHAVGRAGERPVPPLNLAGDFGGGSMFLITGVLAALWERERSGL  176

Query  183  GQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAI  242
            GQV+DAAMVDG SVLAQMMW+M+ +G   D R + LLDG APFY  YE +DG ++AVG I
Sbjct  177  GQVIDAAMVDGASVLAQMMWSMRSLGGWTDDRGANLLDGAAPFYDTYECADGGHVAVGCI  236

Query  243  EPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTP  302
            EPQF+A +L+ LGL AA +P Q D AG+P +    A+ F +  RD W +VF G+DACVTP
Sbjct  237  EPQFYAQMLALLGLDAAALPDQYDRAGWPTLRATLADAFRAHPRDHWAKVFDGSDACVTP  296

Query  303  VLAWSEAANNDHLKARSTVITAHGVQQAAPAP-RFSRTPAGPVRPPPAAATP  353
            VL+W EA  + HL AR T++  HG  Q APAP   +R   GP RPP  A TP
Sbjct  297  VLSWGEAIEHPHLAARGTLLDLHGAPQPAPAPGSRARCRTGPPRPPSPALTP  348


>gi|296170032|ref|ZP_06851636.1| alpha-methylacyl-CoA racemase [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295895300|gb|EFG75009.1| alpha-methylacyl-CoA racemase [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=361

 Score =  385 bits (989),  Expect = 5e-105, Method: Compositional matrix adjust.
 Identities = 198/359 (56%), Positives = 253/359 (71%), Gaps = 11/359 (3%)

Query  5    GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRP----GGLTMPSEDRDLLHRGKRI  60
            GPL G++V+EL GIGPGPHA M+L DLGADVVR+ RP    GG+      +D + R +R+
Sbjct  3    GPLKGLRVVELAGIGPGPHAAMILGDLGADVVRIDRPSSGPGGVA-----KDAMLRNRRV  57

Query  61   VDLDVKTQP--QAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQ  118
            V +D+K+      +L+L AKADVL++ FRPG  ERLG+GP+ CA VN RLI+AR+TGWGQ
Sbjct  58   VTVDLKSDEGRAVVLKLVAKADVLIEGFRPGVTERLGLGPEQCAEVNERLIYARMTGWGQ  117

Query  119  DGPLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERE  178
             GP +  AGHDINY+S  G L A G A+  P+PPLNLV DFGGGSM +L+GI+ AL+ER+
Sbjct  118  TGPRSQQAGHDINYISLNGILHAIGRANERPVPPLNLVGDFGGGSMFLLVGILSALWERQ  177

Query  179  RSGVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMA  238
             SG GQV+DAAMVDG SVL QMMW M+G+G   D R + +LDGGAP+Y  YE +DG+Y+A
Sbjct  178  NSGKGQVIDAAMVDGSSVLIQMMWAMRGLGMWSDARGTNMLDGGAPYYDTYECADGRYVA  237

Query  239  VGAIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDA  298
            VGAIEPQF+AA+L+GLGL AA +P Q DV  +P++       FA+  RD W +VFA +DA
Sbjct  238  VGAIEPQFYAAMLAGLGLDAAGLPAQNDVTRWPELRAALTAAFAAHDRDHWAKVFADSDA  297

Query  299  CVTPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEI  357
            CVTPVLA+ E     H+  R+T   A G  Q  PAPRFSRT     RPP A    ++ +
Sbjct  298  CVTPVLAFGEVHTEPHITERNTFYDADGGLQPLPAPRFSRTRPDVPRPPAAPLADVEAV  356


>gi|226308378|ref|YP_002768338.1| alpha-methylacyl-CoA racemase [Rhodococcus erythropolis PR4]
 gi|226187495|dbj|BAH35599.1| probable alpha-methylacyl-CoA racemase [Rhodococcus erythropolis 
PR4]
Length=364

 Score =  385 bits (989),  Expect = 6e-105, Method: Compositional matrix adjust.
 Identities = 199/354 (57%), Positives = 256/354 (73%), Gaps = 3/354 (0%)

Query  1    VTTG-GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKR  59
             TTG GPLAG++V+EL GIGPGPHA  +LADLGADVVRV+R G +  P + RD   RG+R
Sbjct  3    TTTGRGPLAGLRVVELAGIGPGPHAATLLADLGADVVRVQRAGRIPGPGQPRDQTQRGRR  62

Query  60   IVDLDVKTQP--QAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWG  117
              ++D+K       +L L  +ADVL++ FRPG  ERLG+GPD     NP L++ R+TGWG
Sbjct  63   FCEVDLKDPAGVDIVLGLIERADVLIEGFRPGVTERLGLGPDVALERNPALVYGRMTGWG  122

Query  118  QDGPLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYER  177
            Q+GPL+  AGHDINY+S TG L A G A   P+PPLN+V DFGGGSM +L GI+ AL+ER
Sbjct  123  QEGPLSQAAGHDINYISLTGVLHAIGRAGERPVPPLNMVGDFGGGSMFLLFGILAALFER  182

Query  178  ERSGVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYM  237
            ++SG GQVVDAAMVDG   L+ MMW+ +G+G   D+R   +LD GAP+Y  YETSDG+YM
Sbjct  183  QKSGQGQVVDAAMVDGTLALSHMMWSFRGLGRWSDERGVNMLDTGAPYYDTYETSDGRYM  242

Query  238  AVGAIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTD  297
            AVGA+EPQF+A LL+GLGL  A +P+Q D + +PQ   +FA+ FAS+TRDEW  +F GTD
Sbjct  243  AVGAVEPQFYALLLAGLGLDPATLPSQNDKSAWPQTKKVFADVFASKTRDEWAAIFDGTD  302

Query  298  ACVTPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAA  351
            AC TPVLA++EA++N H+  R +++   GV Q  PAPRFSR+  G    P A A
Sbjct  303  ACTTPVLAFAEASSNPHVAQRGSLVELDGVTQHRPAPRFSRSDPGLPSAPAAEA  356


>gi|312141267|ref|YP_004008603.1| alpha-methylacyl-CoA racemase [Rhodococcus equi 103S]
 gi|311890606|emb|CBH49924.1| putative alpha-methylacyl-CoA racemase [Rhodococcus equi 103S]
Length=366

 Score =  384 bits (987),  Expect = 9e-105, Method: Compositional matrix adjust.
 Identities = 192/355 (55%), Positives = 250/355 (71%), Gaps = 2/355 (0%)

Query  5    GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIVDLD  64
            GPL G++V+E  GIGPGPHA  +LADLGADVVRV+R G L    +  D   R +R+V+ D
Sbjct  10   GPLTGIRVVEFAGIGPGPHAATLLADLGADVVRVQRAGMLPAEGQVGDQTARNRRVVEAD  69

Query  65   VKT--QPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPL  122
            +K     + ++EL  +AD+L++ FRPG  ER+G+GPD      PRL++ R+TGWGQDGPL
Sbjct  70   LKNPADVEKVVELLGRADILIEGFRPGVMERMGLGPDVVLERCPRLVYGRMTGWGQDGPL  129

Query  123  ASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGV  182
            A +AGHD+NY+S TG L A G     P+PPLN+V DFGGGSM +L G++ AL ER+ SG 
Sbjct  130  AQSAGHDLNYISLTGVLHAVGRKGERPVPPLNMVGDFGGGSMFLLFGLLAALVERQTSGK  189

Query  183  GQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAI  242
            GQV+DAAMVDG   L+ ++W  + IG   D+R    LDGGAP+Y  YETSDGKYMAVGAI
Sbjct  190  GQVIDAAMVDGTLALSHIIWNFRRIGMWSDERGVNFLDGGAPYYDTYETSDGKYMAVGAI  249

Query  243  EPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTP  302
            EPQF+A LL GL L  A +P Q D + +P++  I  ++F S+TRDEWT++F GTDAC TP
Sbjct  250  EPQFYAELLKGLELDPATLPGQQDASRWPELRQILTDKFLSKTRDEWTKIFDGTDACTTP  309

Query  303  VLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEI  357
            VL ++EA N+ H+ AR ++I   GV Q APAPRFSRTP    +PP   AT +D +
Sbjct  310  VLTFTEAPNDPHIAARGSIIELEGVTQHAPAPRFSRTPTTAPQPPARVATDVDTL  364


>gi|145222714|ref|YP_001133392.1| L-carnitine dehydratase/bile acid-inducible protein F [Mycobacterium 
gilvum PYR-GCK]
 gi|315443179|ref|YP_004076058.1| acyl-CoA transferase/carnitine dehydratase [Mycobacterium sp. 
Spyr1]
 gi|145215200|gb|ABP44604.1| L-carnitine dehydratase/bile acid-inducible protein F [Mycobacterium 
gilvum PYR-GCK]
 gi|315261482|gb|ADT98223.1| predicted acyl-CoA transferase/carnitine dehydratase [Mycobacterium 
sp. Spyr1]
Length=364

 Score =  380 bits (977),  Expect = 2e-103, Method: Compositional matrix adjust.
 Identities = 189/347 (55%), Positives = 245/347 (71%), Gaps = 5/347 (1%)

Query  5    GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSED--RDLLHRGKRIVD  62
            GPL G++V+EL GIGPGPHA M+  DLGADVVR+ RPG    P+     D L R +R V 
Sbjct  3    GPLQGLRVVELAGIGPGPHAAMIFGDLGADVVRIERPGKGPGPATKPGGDYLLRNRRSVA  62

Query  63   LDVKTQP--QAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDG  120
             ++K+    + +L L AKADVL++ FRPG  ERLG+GP+DCA VN +L++AR+TGWGQDG
Sbjct  63   ANLKSDEDREMVLRLIAKADVLIEGFRPGVTERLGLGPEDCAKVNEKLVYARMTGWGQDG  122

Query  121  PLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERS  180
            P A  AGHDINY+S  G L A G     P+PPLNL  DFGGGSM +L+G++ AL+ERERS
Sbjct  123  PRAQQAGHDINYISLNGVLHAIGRHGERPVPPLNLAGDFGGGSMFLLVGVLAALWERERS  182

Query  181  GVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVG  240
            G GQVVDAAMVDG SVL+ MMW+ +G+G   D+R   +LD GAP+Y  YE SDG+++AVG
Sbjct  183  GKGQVVDAAMVDGSSVLSMMMWSFRGMGMWSDERGVNMLDTGAPYYDTYECSDGRHIAVG  242

Query  241  AIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACV  300
             IEPQF+A  L G+GL  AD+P Q D+  +P++ + F++  A+  RD W  VFAGTDACV
Sbjct  243  CIEPQFYAEFLKGVGLEGADLPGQNDMGRWPELREAFSKAIAAHDRDHWAGVFAGTDACV  302

Query  301  TPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRT-PAGPVRP  346
            TPVL+++E  +  H   R T  + +G    APAPRFSR+ P+ P  P
Sbjct  303  TPVLSFAEVESEPHNTERDTFYSENGSLYPAPAPRFSRSVPSAPKAP  349


>gi|325673900|ref|ZP_08153590.1| fatty acid-CoA racemase [Rhodococcus equi ATCC 33707]
 gi|325555165|gb|EGD24837.1| fatty acid-CoA racemase [Rhodococcus equi ATCC 33707]
Length=355

 Score =  379 bits (974),  Expect = 4e-103, Method: Compositional matrix adjust.
 Identities = 189/353 (54%), Positives = 248/353 (71%), Gaps = 2/353 (0%)

Query  7    LAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIVDLDVK  66
            + G++V+E  GIGPGPHA  +LADLGADVVRV+R G L    +  D   R +R+V+ D+K
Sbjct  1    MTGIRVVEFAGIGPGPHAATLLADLGADVVRVQRAGMLPAEGQVGDQTARNRRVVEADLK  60

Query  67   T--QPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPLAS  124
                 + ++EL  +AD+L++ FRPG  ER+G+GPD      PRL++ R+TGWGQDGPLA 
Sbjct  61   NPADVEKVVELLGRADILIEGFRPGVMERMGLGPDVVLERCPRLVYGRMTGWGQDGPLAQ  120

Query  125  TAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGVGQ  184
            +AGHD+NY+S TG L A G     P+PPLN+V DFGGGSM +L G++ AL ER+ SG GQ
Sbjct  121  SAGHDLNYISLTGVLHAVGRKGERPVPPLNMVGDFGGGSMFLLFGLLAALVERQTSGKGQ  180

Query  185  VVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAIEP  244
            V+DAAMVDG   L+ ++W  + IG   D+R    LDGGAP+Y  YETSDGKYMAVGAIEP
Sbjct  181  VIDAAMVDGTLALSHIIWNFRRIGMWSDERGVNFLDGGAPYYDTYETSDGKYMAVGAIEP  240

Query  245  QFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTPVL  304
            QF+A LL GL L  A +P Q D + +P++  I  ++F S+TRDEWT++F GTDAC TPVL
Sbjct  241  QFYAELLKGLELDPATLPGQQDASRWPELRQILTDKFLSKTRDEWTKIFDGTDACTTPVL  300

Query  305  AWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEI  357
             ++EA N+ H+ AR ++I   GV Q APAPRFSRTP    +PP   AT +D +
Sbjct  301  TFTEAPNDPHIAARGSIIELEGVTQHAPAPRFSRTPTTAPQPPARVATDVDTL  353


>gi|226361774|ref|YP_002779552.1| alpha-methylacyl-CoA racemase [Rhodococcus opacus B4]
 gi|226240259|dbj|BAH50607.1| alpha-methylacyl-CoA racemase [Rhodococcus opacus B4]
Length=365

 Score =  379 bits (972),  Expect = 5e-103, Method: Compositional matrix adjust.
 Identities = 200/359 (56%), Positives = 239/359 (67%), Gaps = 4/359 (1%)

Query  5    GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSE--DRDLLHRGKRIVD  62
            GPL G++V+EL GIGPGPHA M+LADLGA+VVRV R      P    D D   RG+ IV+
Sbjct  3    GPLNGLRVVELAGIGPGPHACMLLADLGAEVVRVERRTHTDAPGTTIDADATLRGRHIVE  62

Query  63   LDVKTQPQA--MLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDG  120
             D+K       +LEL   ADVL++ FRPG  ERLG+GPDDC +VNPRLI+ R+TGWGQ G
Sbjct  63   ADLKNTADRDRILELIEHADVLVEGFRPGVTERLGLGPDDCQAVNPRLIYGRMTGWGQSG  122

Query  121  PLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERS  180
            P A  AGHDINY+S TG L   G A   P+PPLNLV DFGGGSM +++GI+ AL+ RE S
Sbjct  123  PFADRAGHDINYISLTGILDNIGRAGDRPVPPLNLVGDFGGGSMFLVVGILAALFARESS  182

Query  181  GVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVG  240
            G GQVVDAAMVDG SVLAQMMW+++   +    R   LLDG  PFY  YE +DGK++AVG
Sbjct  183  GRGQVVDAAMVDGASVLAQMMWSLRSNRTWATGRGENLLDGSHPFYDTYECADGKHVAVG  242

Query  241  AIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACV  300
            AIEPQF+A LL GL L A  +P Q +  G+  +   F   F SRTRDEW +VFA TDACV
Sbjct  243  AIEPQFYAQLLDGLQLDATRLPGQWNRQGWAHLRAEFEIAFKSRTRDEWAQVFATTDACV  302

Query  301  TPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEINW  359
            TPVL + EA  + H+ AR T  T  GV Q APAPRFS TP      P +   P     W
Sbjct  303  TPVLTYDEALQHPHMAARGTFATVAGVDQPAPAPRFSDTPTTTPSQPRSLGLPEQIRQW  361


>gi|108801033|ref|YP_641230.1| L-carnitine dehydratase/bile acid-inducible protein F [Mycobacterium 
sp. MCS]
 gi|119870174|ref|YP_940126.1| L-carnitine dehydratase/bile acid-inducible protein F [Mycobacterium 
sp. KMS]
 gi|126436869|ref|YP_001072560.1| L-carnitine dehydratase/bile acid-inducible protein F [Mycobacterium 
sp. JLS]
 gi|108771452|gb|ABG10174.1| L-carnitine dehydratase/bile acid-inducible protein F [Mycobacterium 
sp. MCS]
 gi|119696263|gb|ABL93336.1| L-carnitine dehydratase/bile acid-inducible protein F [Mycobacterium 
sp. KMS]
 gi|126236669|gb|ABO00070.1| L-carnitine dehydratase/bile acid-inducible protein F [Mycobacterium 
sp. JLS]
Length=363

 Score =  378 bits (971),  Expect = 6e-103, Method: Compositional matrix adjust.
 Identities = 190/337 (57%), Positives = 237/337 (71%), Gaps = 3/337 (0%)

Query  5    GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPG-GLTMPSEDRDLLHRGKRIVDL  63
            GPL G++V+EL GIGPGPHA M+L DLGADVVR+ RPG G  +P++  D L R +R V  
Sbjct  3    GPLQGLRVVELAGIGPGPHAAMILGDLGADVVRIERPGKGPGIPTKGSDQLLRNRRSVGA  62

Query  64   DVKTQP--QAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGP  121
            ++KT    + +L L AKADVL++ FRPG  ERLG+GP+DCA VN RLI+ R+TGWGQ GP
Sbjct  63   NLKTDEGRELVLRLIAKADVLIEGFRPGVTERLGLGPEDCAKVNERLIYGRMTGWGQTGP  122

Query  122  LASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSG  181
             +  AGHDINY+S  G L A G A   P+PPLNL  DFGGGSM +L+GI+ AL+ERERSG
Sbjct  123  RSQQAGHDINYISLNGVLHAVGRAGERPVPPLNLAGDFGGGSMFLLVGILAALWERERSG  182

Query  182  VGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGA  241
             GQVVDAAMVDG SVLAQMMW  + +G   D+R   +LD GAP+Y  YETSDG+Y+AVGA
Sbjct  183  KGQVVDAAMVDGSSVLAQMMWAFRAMGMWSDERGVNMLDTGAPYYDTYETSDGRYVAVGA  242

Query  242  IEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVT  301
            IEPQF+A +L  LGL  A +P Q D++ +P++  +  + FA   RD W +VF G+DACVT
Sbjct  243  IEPQFYAEMLDKLGLDPAGLPDQNDMSRWPELRAVLTKAFAEHDRDHWAKVFTGSDACVT  302

Query  302  PVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSR  338
            PVL++ E     H   R T          APAPRFSR
Sbjct  303  PVLSFGEVEAEPHNTERDTFYREGDFLFPAPAPRFSR  339



Lambda     K      H
   0.320    0.138    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 669804029900




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40