BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0855
Length=359
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607995|ref|NP_215370.1| fatty-acid-CoA racemase [Mycobacter... 724 0.0
gi|340625869|ref|YP_004744321.1| putative fatty-acid-CoA racemas... 722 0.0
gi|289756941|ref|ZP_06516319.1| fatty-acid-CoA racemase far [Myc... 722 0.0
gi|306796626|ref|ZP_07434928.1| fatty-acid-CoA racemase far [Myc... 707 0.0
gi|296169610|ref|ZP_06851230.1| fatty-acid-CoA racemase [Mycobac... 638 0.0
gi|183984649|ref|YP_001852940.1| fatty-acid-CoA racemase Far [My... 634 6e-180
gi|254818312|ref|ZP_05223313.1| Far [Mycobacterium intracellular... 622 4e-176
gi|118465733|ref|YP_880236.1| alpha-methylacyl-CoA racemase [Myc... 615 3e-174
gi|41406883|ref|NP_959719.1| Far [Mycobacterium avium subsp. par... 615 4e-174
gi|254773862|ref|ZP_05215378.1| Far [Mycobacterium avium subsp. ... 613 2e-173
gi|342860458|ref|ZP_08717109.1| Far [Mycobacterium colombiense C... 609 2e-172
gi|240171440|ref|ZP_04750099.1| putative fatty-acid-CoA racemase... 597 7e-169
gi|118471931|ref|YP_889967.1| alpha-methylacyl-CoA racemase [Myc... 566 2e-159
gi|169627944|ref|YP_001701593.1| fatty-acid-CoA racemase Far [My... 517 1e-144
gi|262203639|ref|YP_003274847.1| alpha-methylacyl-CoA racemase [... 414 1e-113
gi|343927798|ref|ZP_08767266.1| alpha-methylacyl-CoA racemase [G... 414 1e-113
gi|257056362|ref|YP_003134194.1| putative acyl-CoA transferase/c... 412 4e-113
gi|302526303|ref|ZP_07278645.1| L-carnitine dehydratase/bile aci... 411 9e-113
gi|296270062|ref|YP_003652694.1| L-carnitine dehydratase/bile ac... 405 5e-111
gi|120405530|ref|YP_955359.1| L-carnitine dehydratase/bile acid-... 401 1e-109
gi|15840584|ref|NP_335621.1| fatty acid-CoA racemase [Mycobacter... 400 1e-109
gi|240172481|ref|ZP_04751140.1| Mcr protein [Mycobacterium kansa... 400 2e-109
gi|15608283|ref|NP_215659.1| alpha-methylacyl-CoA racemase [Myco... 400 3e-109
gi|289555070|ref|ZP_06444280.1| alpha-methylacyl-CoA racemase mc... 399 3e-109
gi|312199516|ref|YP_004019577.1| L-carnitine dehydratase/bile ac... 399 3e-109
gi|325003304|ref|ZP_08124416.1| predicted acyl-CoA transferase/c... 399 4e-109
gi|111222800|ref|YP_713594.1| alpha-methylacyl-CoA racemase [Fra... 398 6e-109
gi|312197060|ref|YP_004017121.1| L-carnitine dehydratase/bile ac... 398 6e-109
gi|118473757|ref|YP_889430.1| alpha-methylacyl-CoA racemase [Myc... 398 6e-109
gi|41408736|ref|NP_961572.1| Mcr [Mycobacterium avium subsp. par... 398 8e-109
gi|340626158|ref|YP_004744610.1| putative alpha-methylacyl-CoA r... 398 8e-109
gi|118462940|ref|YP_880529.1| Mcr protein [Mycobacterium avium 1... 398 9e-109
gi|336458775|gb|EGO37735.1| putative acyl-CoA transferase/carnit... 397 1e-108
gi|226365035|ref|YP_002782818.1| alpha-methylacyl-CoA racemase [... 395 6e-108
gi|342861757|ref|ZP_08718403.1| Mcr [Mycobacterium colombiense C... 395 7e-108
gi|229492996|ref|ZP_04386791.1| alpha-methylacyl-CoA racemase [R... 395 7e-108
gi|226304922|ref|YP_002764880.1| alpha-methylacyl-CoA racemase [... 394 1e-107
gi|111022523|ref|YP_705495.1| alpha-methylacyl-CoA racemase [Rho... 394 1e-107
gi|226349943|ref|YP_002777056.1| alpha-methylacyl-CoA racemase [... 392 6e-107
gi|54312031|dbj|BAD66657.1| alpha-Methylacyl-CoA racemase [Mycob... 391 9e-107
gi|254820698|ref|ZP_05225699.1| Mcr [Mycobacterium intracellular... 390 1e-106
gi|326384845|ref|ZP_08206520.1| alpha-methylacyl-CoA racemase [G... 388 7e-106
gi|288924215|ref|ZP_06418249.1| L-carnitine dehydratase/bile aci... 385 4e-105
gi|296170032|ref|ZP_06851636.1| alpha-methylacyl-CoA racemase [M... 385 5e-105
gi|226308378|ref|YP_002768338.1| alpha-methylacyl-CoA racemase [... 385 6e-105
gi|312141267|ref|YP_004008603.1| alpha-methylacyl-CoA racemase [... 384 9e-105
gi|145222714|ref|YP_001133392.1| L-carnitine dehydratase/bile ac... 380 2e-103
gi|325673900|ref|ZP_08153590.1| fatty acid-CoA racemase [Rhodoco... 379 4e-103
gi|226361774|ref|YP_002779552.1| alpha-methylacyl-CoA racemase [... 379 5e-103
gi|108801033|ref|YP_641230.1| L-carnitine dehydratase/bile acid-... 378 6e-103
>gi|15607995|ref|NP_215370.1| fatty-acid-CoA racemase [Mycobacterium tuberculosis H37Rv]
gi|15840268|ref|NP_335305.1| fatty acid-CoA racemase [Mycobacterium tuberculosis CDC1551]
gi|31792043|ref|NP_854536.1| fatty-acid-CoA racemase [Mycobacterium bovis AF2122/97]
76 more sequence titles
Length=359
Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/359 (99%), Positives = 359/359 (100%), Gaps = 0/359 (0%)
Query 1 VTTGGPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRI 60
+TTGGPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRI
Sbjct 1 MTTGGPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRI 60
Query 61 VDLDVKTQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDG 120
VDLDVKTQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDG
Sbjct 61 VDLDVKTQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDG 120
Query 121 PLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERS 180
PLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERS
Sbjct 121 PLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERS 180
Query 181 GVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVG 240
GVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVG
Sbjct 181 GVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVG 240
Query 241 AIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACV 300
AIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACV
Sbjct 241 AIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACV 300
Query 301 TPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEINW 359
TPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEINW
Sbjct 301 TPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEINW 359
>gi|340625869|ref|YP_004744321.1| putative fatty-acid-CoA racemase FAR [Mycobacterium canettii
CIPT 140010059]
gi|340004059|emb|CCC43195.1| putative fatty-acid-CoA racemase FAR [Mycobacterium canettii
CIPT 140010059]
Length=359
Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/359 (99%), Positives = 358/359 (99%), Gaps = 0/359 (0%)
Query 1 VTTGGPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRI 60
+TTGGPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRI
Sbjct 1 MTTGGPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRI 60
Query 61 VDLDVKTQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDG 120
VDLDVKTQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDG
Sbjct 61 VDLDVKTQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDG 120
Query 121 PLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERS 180
PLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERS
Sbjct 121 PLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERS 180
Query 181 GVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVG 240
GVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVG
Sbjct 181 GVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVG 240
Query 241 AIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACV 300
AIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACV
Sbjct 241 AIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACV 300
Query 301 TPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEINW 359
TPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAA TPIDEINW
Sbjct 301 TPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAATTPIDEINW 359
>gi|289756941|ref|ZP_06516319.1| fatty-acid-CoA racemase far [Mycobacterium tuberculosis T85]
gi|289712505|gb|EFD76517.1| fatty-acid-CoA racemase far [Mycobacterium tuberculosis T85]
gi|326904925|gb|EGE51858.1| fatty-acid-CoA racemase far [Mycobacterium tuberculosis W-148]
gi|339293869|gb|AEJ45980.1| fatty-acid-CoA racemase far [Mycobacterium tuberculosis CCDC5079]
gi|339297510|gb|AEJ49620.1| fatty-acid-CoA racemase far [Mycobacterium tuberculosis CCDC5180]
Length=359
Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/359 (99%), Positives = 358/359 (99%), Gaps = 0/359 (0%)
Query 1 VTTGGPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRI 60
+TTGGPLAGVKVIELGGIGPGPH GMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRI
Sbjct 1 MTTGGPLAGVKVIELGGIGPGPHVGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRI 60
Query 61 VDLDVKTQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDG 120
VDLDVKTQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDG
Sbjct 61 VDLDVKTQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDG 120
Query 121 PLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERS 180
PLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERS
Sbjct 121 PLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERS 180
Query 181 GVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVG 240
GVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVG
Sbjct 181 GVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVG 240
Query 241 AIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACV 300
AIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACV
Sbjct 241 AIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACV 300
Query 301 TPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEINW 359
TPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEINW
Sbjct 301 TPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEINW 359
>gi|306796626|ref|ZP_07434928.1| fatty-acid-CoA racemase far [Mycobacterium tuberculosis SUMu006]
gi|308342960|gb|EFP31811.1| fatty-acid-CoA racemase far [Mycobacterium tuberculosis SUMu006]
Length=350
Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/350 (99%), Positives = 350/350 (100%), Gaps = 0/350 (0%)
Query 10 VKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIVDLDVKTQP 69
+KVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIVDLDVKTQP
Sbjct 1 MKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIVDLDVKTQP 60
Query 70 QAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPLASTAGHD 129
QAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPLASTAGHD
Sbjct 61 QAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPLASTAGHD 120
Query 130 INYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGVGQVVDAA 189
INYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGVGQVVDAA
Sbjct 121 INYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGVGQVVDAA 180
Query 190 MVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAIEPQFFAA 249
MVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAIEPQFFAA
Sbjct 181 MVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAIEPQFFAA 240
Query 250 LLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTPVLAWSEA 309
LLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTPVLAWSEA
Sbjct 241 LLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTPVLAWSEA 300
Query 310 ANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEINW 359
ANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEINW
Sbjct 301 ANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEINW 350
>gi|296169610|ref|ZP_06851230.1| fatty-acid-CoA racemase [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295895876|gb|EFG75571.1| fatty-acid-CoA racemase [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=359
Score = 638 bits (1645), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/356 (87%), Positives = 332/356 (94%), Gaps = 0/356 (0%)
Query 4 GGPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIVDL 63
GGPLAGVKVIELGGIGPGPHAGM+LADLGADVVRVRRPGGL MP EDRDLLHRGKRIVDL
Sbjct 4 GGPLAGVKVIELGGIGPGPHAGMMLADLGADVVRVRRPGGLVMPPEDRDLLHRGKRIVDL 63
Query 64 DVKTQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPLA 123
DVKTQPQA+L LAA+ADVLLDCFRPGTCERLGIGPD+CA+VNPRLIFARITGWGQDGPLA
Sbjct 64 DVKTQPQALLGLAARADVLLDCFRPGTCERLGIGPDECAAVNPRLIFARITGWGQDGPLA 123
Query 124 STAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGVG 183
TAGHDINYLSQTGAL+A GYADRPPMPPLNLVADFGGGSMLVLLGIV ALYERERSG G
Sbjct 124 RTAGHDINYLSQTGALSALGYADRPPMPPLNLVADFGGGSMLVLLGIVAALYERERSGAG 183
Query 184 QVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAIE 243
QV+DAAMVDGVS+LAQMMWTMK G+LRD+RESFLLDGGAPFYRCYET+DGKYMAVGAIE
Sbjct 184 QVIDAAMVDGVSLLAQMMWTMKSTGALRDRRESFLLDGGAPFYRCYETADGKYMAVGAIE 243
Query 244 PQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTPV 303
PQFFAALL+GLGLSA +VP QLDVA YP+MY++FA+RFASRTRDEWT FAGTDACVTPV
Sbjct 244 PQFFAALLTGLGLSAGEVPGQLDVASYPRMYEVFAQRFASRTRDEWTTTFAGTDACVTPV 303
Query 304 LAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEINW 359
L W+EAA ++HL+ARSTV+TAHGV QAAP PRFSRTPA PV PPAA +PI EI W
Sbjct 304 LTWTEAAADEHLRARSTVVTAHGVDQAAPGPRFSRTPAAPVGRPPAATSPITEIGW 359
>gi|183984649|ref|YP_001852940.1| fatty-acid-CoA racemase Far [Mycobacterium marinum M]
gi|183177975|gb|ACC43085.1| fatty-acid-CoA racemase Far [Mycobacterium marinum M]
Length=359
Score = 634 bits (1635), Expect = 6e-180, Method: Compositional matrix adjust.
Identities = 318/356 (90%), Positives = 339/356 (96%), Gaps = 0/356 (0%)
Query 4 GGPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIVDL 63
GGPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGL MP+EDRDLLHRGKRIVDL
Sbjct 4 GGPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLQMPAEDRDLLHRGKRIVDL 63
Query 64 DVKTQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPLA 123
DVK+QPQA+LELAAKADVLLDCFRPGTCERLGIGPDDCA+VNPRLIFARITGWGQDGPLA
Sbjct 64 DVKSQPQALLELAAKADVLLDCFRPGTCERLGIGPDDCAAVNPRLIFARITGWGQDGPLA 123
Query 124 STAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGVG 183
TAGHDINYLSQTGAL+A GY DRPP PPLNLVADFGGGSMLVLLGI+ ALYERERSG G
Sbjct 124 PTAGHDINYLSQTGALSALGYRDRPPTPPLNLVADFGGGSMLVLLGIMAALYERERSGQG 183
Query 184 QVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAIE 243
QV+DAAMVDGVSVLAQMMWTMKGIGSLRD+RESFLLDGGAPFYRCYETSDGK+MAVGAIE
Sbjct 184 QVIDAAMVDGVSVLAQMMWTMKGIGSLRDERESFLLDGGAPFYRCYETSDGKHMAVGAIE 243
Query 244 PQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTPV 303
PQFFAALL+GLGLSAA+VP+QLD+A YP+M ++F+ERFASRTRDEW VFAGTDACVTPV
Sbjct 244 PQFFAALLAGLGLSAAEVPSQLDIAAYPKMREMFSERFASRTRDEWAAVFAGTDACVTPV 303
Query 304 LAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEINW 359
L WSEAA +DHL+ARSTVI+AHGV+QAAPAPRFSRTPAGPV PPPA TPI EINW
Sbjct 304 LKWSEAAASDHLRARSTVISAHGVEQAAPAPRFSRTPAGPVGPPPATITPIGEINW 359
>gi|254818312|ref|ZP_05223313.1| Far [Mycobacterium intracellulare ATCC 13950]
Length=359
Score = 622 bits (1603), Expect = 4e-176, Method: Compositional matrix adjust.
Identities = 303/357 (85%), Positives = 325/357 (92%), Gaps = 1/357 (0%)
Query 4 GGPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRP-GGLTMPSEDRDLLHRGKRIVD 62
GGPLAGV+VIELGGIGPGPHAGM+LADLGADVVRVRRP GGL MP+E RDLLHRGKRIVD
Sbjct 3 GGPLAGVRVIELGGIGPGPHAGMLLADLGADVVRVRRPSGGLEMPAEGRDLLHRGKRIVD 62
Query 63 LDVKTQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPL 122
LDVKTQPQA+LELAAKADVLLDCFRPGTCERLGIGPDDCA+ NPRLIFARITGWGQDGPL
Sbjct 63 LDVKTQPQALLELAAKADVLLDCFRPGTCERLGIGPDDCAAANPRLIFARITGWGQDGPL 122
Query 123 ASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGV 182
A TAGHDINYLSQTGAL+A GYADRPP+PPLNLVADFGGGSMLV+ GI VALYERERSG
Sbjct 123 ARTAGHDINYLSQTGALSALGYADRPPIPPLNLVADFGGGSMLVVFGIAVALYERERSGK 182
Query 183 GQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAI 242
GQV+DAAMVDGVS+LAQMMWTMK G+LRD+R+SFLLDGGAPFY CYET+DG Y+AVGAI
Sbjct 183 GQVIDAAMVDGVSLLAQMMWTMKSTGALRDRRQSFLLDGGAPFYGCYETADGGYVAVGAI 242
Query 243 EPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTP 302
EPQFFAALL GLGLS DVP QLD YP+M +IF +RFASRTRDEW R FAGTDACVTP
Sbjct 243 EPQFFAALLDGLGLSPEDVPGQLDKDSYPRMREIFTKRFASRTRDEWARTFAGTDACVTP 302
Query 303 VLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEINW 359
VL W+EAA +DHL+ RSTVIT HGV QAAPAPRFSRTP GPV PPPAA TP+DEINW
Sbjct 303 VLTWTEAATDDHLRTRSTVITVHGVDQAAPAPRFSRTPTGPVEPPPAATTPLDEINW 359
>gi|118465733|ref|YP_880236.1| alpha-methylacyl-CoA racemase [Mycobacterium avium 104]
gi|118167020|gb|ABK67917.1| alpha-methylacyl-CoA racemase [Mycobacterium avium 104]
Length=359
Score = 615 bits (1587), Expect = 3e-174, Method: Compositional matrix adjust.
Identities = 300/359 (84%), Positives = 326/359 (91%), Gaps = 0/359 (0%)
Query 1 VTTGGPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRI 60
+++GGPLAGV+VIELGGIGPGPHAGMVLADLGADVVRVRRPG MPSEDRDLLHRGKRI
Sbjct 1 MSSGGPLAGVRVIELGGIGPGPHAGMVLADLGADVVRVRRPGVAAMPSEDRDLLHRGKRI 60
Query 61 VDLDVKTQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDG 120
VDLDVK +PQA+L+LAAKADVLLDCFRPGTCERLGIGPDDCA+VNPRLIFARITGWGQ G
Sbjct 61 VDLDVKARPQALLDLAAKADVLLDCFRPGTCERLGIGPDDCAAVNPRLIFARITGWGQHG 120
Query 121 PLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERS 180
PLA TAGHDINYLSQTG L+A G+ADRPP+PPLNLVADFGGGSMLVLLGI ALYERERS
Sbjct 121 PLAQTAGHDINYLSQTGVLSALGHADRPPLPPLNLVADFGGGSMLVLLGITAALYERERS 180
Query 181 GVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVG 240
G GQV+DAAMVDGVS+LAQMMWTMK G+LRD+RESFLLDGGAPFY CYET+DGKY+AVG
Sbjct 181 GRGQVIDAAMVDGVSLLAQMMWTMKSTGALRDRRESFLLDGGAPFYGCYETADGKYVAVG 240
Query 241 AIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACV 300
AIEPQFFAALL GLGLS +VP QLD YP+M +IF +RFA RTRDEW RVFAGTDACV
Sbjct 241 AIEPQFFAALLDGLGLSPEEVPGQLDRDSYPRMREIFTQRFAGRTRDEWARVFAGTDACV 300
Query 301 TPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEINW 359
TPVL WSEAA ++HL+ARSTVITAHGV QAAPAPRFS TPA PV PPA +TP+DEINW
Sbjct 301 TPVLTWSEAAASEHLRARSTVITAHGVDQAAPAPRFSHTPARPVGRPPATSTPLDEINW 359
>gi|41406883|ref|NP_959719.1| Far [Mycobacterium avium subsp. paratuberculosis K-10]
gi|41395233|gb|AAS03102.1| Far [Mycobacterium avium subsp. paratuberculosis K-10]
gi|336461195|gb|EGO40071.1| putative acyl-CoA transferase/carnitine dehydratase [Mycobacterium
avium subsp. paratuberculosis S397]
Length=359
Score = 615 bits (1586), Expect = 4e-174, Method: Compositional matrix adjust.
Identities = 299/359 (84%), Positives = 326/359 (91%), Gaps = 0/359 (0%)
Query 1 VTTGGPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRI 60
+++GGPLAGV+VIELGGIGPGPHAGMVLADLGADVVRVRRPG MPSEDRDLLHRGKRI
Sbjct 1 MSSGGPLAGVRVIELGGIGPGPHAGMVLADLGADVVRVRRPGVAAMPSEDRDLLHRGKRI 60
Query 61 VDLDVKTQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDG 120
VDLDVK +PQA+L+LAAKADVLLDCFRPGTCERLGIGPDDCA+VNPRLIFARITGWGQ G
Sbjct 61 VDLDVKARPQALLDLAAKADVLLDCFRPGTCERLGIGPDDCAAVNPRLIFARITGWGQHG 120
Query 121 PLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERS 180
PLA TAGHDINYLSQTG L+A G+ADRPP+PPLNLVADFGGGSMLVLLGI ALYERERS
Sbjct 121 PLAQTAGHDINYLSQTGVLSALGHADRPPLPPLNLVADFGGGSMLVLLGITAALYERERS 180
Query 181 GVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVG 240
G GQV+DAAMVDGVS+LAQMMWTMK G+LRD+RESFLLDGGAPFY CYET+DGKY+AVG
Sbjct 181 GRGQVIDAAMVDGVSLLAQMMWTMKSTGALRDRRESFLLDGGAPFYGCYETADGKYVAVG 240
Query 241 AIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACV 300
AIEPQFFAALL GLGLS +VP QLD YP+M ++F +RFA+RTRDEW RVFAGTDACV
Sbjct 241 AIEPQFFAALLDGLGLSPEEVPGQLDRDSYPRMREVFTQRFAARTRDEWARVFAGTDACV 300
Query 301 TPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEINW 359
TPVL WSEAA ++HL+ARSTVITAHGV QAAPAPRFS TPA PV PPA TP+DEINW
Sbjct 301 TPVLTWSEAAASEHLRARSTVITAHGVDQAAPAPRFSHTPARPVGRPPATTTPLDEINW 359
>gi|254773862|ref|ZP_05215378.1| Far [Mycobacterium avium subsp. avium ATCC 25291]
Length=359
Score = 613 bits (1580), Expect = 2e-173, Method: Compositional matrix adjust.
Identities = 298/359 (84%), Positives = 326/359 (91%), Gaps = 0/359 (0%)
Query 1 VTTGGPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRI 60
+++GGPLAGV+VIELGGIGPGPHAGMVLADLGADVVRVRRPG MPSEDRDLLHRGKRI
Sbjct 1 MSSGGPLAGVRVIELGGIGPGPHAGMVLADLGADVVRVRRPGVAAMPSEDRDLLHRGKRI 60
Query 61 VDLDVKTQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDG 120
VDLDVK +P+A+L+LAAKADVLLDCFRPGTCERLGIGPDDCA+VNPRLIFARITGWGQ G
Sbjct 61 VDLDVKARPRALLDLAAKADVLLDCFRPGTCERLGIGPDDCAAVNPRLIFARITGWGQHG 120
Query 121 PLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERS 180
PLA TAGHDINYLSQTG L+A G+ADRPP+PPLNLVADFGGGSMLVLLGI ALYERERS
Sbjct 121 PLAQTAGHDINYLSQTGVLSALGHADRPPLPPLNLVADFGGGSMLVLLGITAALYERERS 180
Query 181 GVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVG 240
G GQV+DAAMVDGVS+LAQMMWTMK G+LRD+RESFLLDGGAPFY CYET+DGKY+AVG
Sbjct 181 GRGQVIDAAMVDGVSLLAQMMWTMKSTGALRDRRESFLLDGGAPFYGCYETADGKYVAVG 240
Query 241 AIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACV 300
AIEPQFFAALL GLGLS +VP QLD YP+M ++F +RFA+RTRDEW RVFAGTDACV
Sbjct 241 AIEPQFFAALLDGLGLSPEEVPGQLDRDSYPRMREVFTQRFAARTRDEWARVFAGTDACV 300
Query 301 TPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEINW 359
TPVL WSEAA ++HL+ARSTVITAHGV QAAPAPRFS T AGPV PPA TP+DEINW
Sbjct 301 TPVLTWSEAAASEHLRARSTVITAHGVDQAAPAPRFSHTRAGPVGRPPATTTPLDEINW 359
>gi|342860458|ref|ZP_08717109.1| Far [Mycobacterium colombiense CECT 3035]
gi|342132113|gb|EGT85354.1| Far [Mycobacterium colombiense CECT 3035]
Length=360
Score = 609 bits (1571), Expect = 2e-172, Method: Compositional matrix adjust.
Identities = 297/357 (84%), Positives = 325/357 (92%), Gaps = 1/357 (0%)
Query 4 GGPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRP-GGLTMPSEDRDLLHRGKRIVD 62
GGPLAGV+VIELGGIGPGPHAGM+LADLGADVVRVRRP GGLTMP+E RDLLHRGKRIVD
Sbjct 4 GGPLAGVRVIELGGIGPGPHAGMLLADLGADVVRVRRPMGGLTMPAEGRDLLHRGKRIVD 63
Query 63 LDVKTQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPL 122
LDVKTQPQA+L LAAKADVLLDCFRPGTCERLGIGP+DCA+VNPRLIFARITGWGQDGPL
Sbjct 64 LDVKTQPQALLNLAAKADVLLDCFRPGTCERLGIGPEDCAAVNPRLIFARITGWGQDGPL 123
Query 123 ASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGV 182
A TAGHDINYLS+TGAL+A GYADRPPM PLNLVADFGGGSMLV++GI ALYERERSG
Sbjct 124 APTAGHDINYLSRTGALSALGYADRPPMAPLNLVADFGGGSMLVVIGIAAALYERERSGA 183
Query 183 GQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAI 242
GQV+DAAMVDGVS+LAQMMWTMK G+LRD+RESFLLDGGAPFY CY T+DG+Y+AVGAI
Sbjct 184 GQVIDAAMVDGVSLLAQMMWTMKSTGALRDRRESFLLDGGAPFYGCYATADGQYVAVGAI 243
Query 243 EPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTP 302
EPQFFAALL+GLGLS DVP Q D A YP+M ++F RFASRTRDEW + FAGTDACVTP
Sbjct 244 EPQFFAALLAGLGLSPDDVPAQHDKASYPRMREVFTRRFASRTRDEWAQTFAGTDACVTP 303
Query 303 VLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEINW 359
VL WSEAA ++HL+ARSTVITAHG QAAPAPRFSRTP+GPV PPAA TP+ EI+W
Sbjct 304 VLTWSEAAADEHLRARSTVITAHGADQAAPAPRFSRTPSGPVGAPPAATTPVSEIDW 360
>gi|240171440|ref|ZP_04750099.1| putative fatty-acid-CoA racemase [Mycobacterium kansasii ATCC
12478]
Length=359
Score = 597 bits (1540), Expect = 7e-169, Method: Compositional matrix adjust.
Identities = 321/359 (90%), Positives = 331/359 (93%), Gaps = 0/359 (0%)
Query 1 VTTGGPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRI 60
+T GGPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRI
Sbjct 1 MTGGGPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRI 60
Query 61 VDLDVKTQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDG 120
VDLDVK QP A+L LAAKADVLLDCFRPGTCERLGIGPDDCA+VNPRLIFARITGWGQDG
Sbjct 61 VDLDVKAQPGALLALAAKADVLLDCFRPGTCERLGIGPDDCAAVNPRLIFARITGWGQDG 120
Query 121 PLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERS 180
PLASTAGHDINYLSQTGAL+A GYADRPPMPPLNLVADFGGGSMLVLLGIV ALYERERS
Sbjct 121 PLASTAGHDINYLSQTGALSALGYADRPPMPPLNLVADFGGGSMLVLLGIVAALYERERS 180
Query 181 GVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVG 240
G GQV+DAAMVDGVSVLAQMMWTMK IGSLRD+RESFLLDGGAPFY CYET+DGKY+AVG
Sbjct 181 GKGQVIDAAMVDGVSVLAQMMWTMKAIGSLRDERESFLLDGGAPFYGCYETADGKYLAVG 240
Query 241 AIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACV 300
AIEPQFFAALL+GLGL A DVP QLDV YP+M DIFAERFA RTRDEWT VFAGTDACV
Sbjct 241 AIEPQFFAALLAGLGLKADDVPNQLDVGSYPRMRDIFAERFAGRTRDEWTEVFAGTDACV 300
Query 301 TPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEINW 359
TPVL WSEAA N HL ARSTVI GV QAAPAPRFSRTPAGPV PPAA TPIDEINW
Sbjct 301 TPVLTWSEAAGNAHLTARSTVINVDGVDQAAPAPRFSRTPAGPVAAPPAATTPIDEINW 359
>gi|118471931|ref|YP_889967.1| alpha-methylacyl-CoA racemase [Mycobacterium smegmatis str. MC2
155]
gi|118173218|gb|ABK74114.1| alpha-methylacyl-CoA racemase [Mycobacterium smegmatis str. MC2
155]
Length=360
Score = 566 bits (1459), Expect = 2e-159, Method: Compositional matrix adjust.
Identities = 269/359 (75%), Positives = 309/359 (87%), Gaps = 0/359 (0%)
Query 1 VTTGGPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRI 60
+T GPL+GV+V+ELGGIGPGPHA M+L+DLGADVVRVRRPGGLT+P+E+ DLLHRGKRI
Sbjct 1 MTKTGPLSGVRVVELGGIGPGPHAAMMLSDLGADVVRVRRPGGLTLPAENVDLLHRGKRI 60
Query 61 VDLDVKTQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDG 120
VDLDVK +P +L+L AKADVLLDCFRPGTCERLGIGP +C +VNPRLIFARITGWGQDG
Sbjct 61 VDLDVKAEPAKLLDLVAKADVLLDCFRPGTCERLGIGPKECEAVNPRLIFARITGWGQDG 120
Query 121 PLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERS 180
PLA TAGHDINYLSQTGAL+A GY DRPP+ P+NLVADFGGGSMLVL+GIV ALYERERS
Sbjct 121 PLAQTAGHDINYLSQTGALSAIGYRDRPPVAPMNLVADFGGGSMLVLVGIVSALYERERS 180
Query 181 GVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVG 240
G GQV+DAAMVDGVS+LAQMMWTM+ GSLRD+RESFLLDGGAPFYRCYET+DG YMAVG
Sbjct 181 GKGQVIDAAMVDGVSMLAQMMWTMRATGSLRDERESFLLDGGAPFYRCYETADGGYMAVG 240
Query 241 AIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACV 300
+IEPQFFA L++GLGL+A ++P Q ++ Y +M IF ERF ++TR EWT +FAGTDACV
Sbjct 241 SIEPQFFAQLVAGLGLAADEIPGQFEIGRYDEMRKIFTERFKTKTRAEWTEIFAGTDACV 300
Query 301 TPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEINW 359
TPVL W EAA N HL+ RST+I GV QAAPAPRFSRTPA PP +T I++I W
Sbjct 301 TPVLTWGEAAENAHLRERSTLIDVDGVAQAAPAPRFSRTPAPTPGKPPQGSTSIEDIGW 359
>gi|169627944|ref|YP_001701593.1| fatty-acid-CoA racemase Far [Mycobacterium abscessus ATCC 19977]
gi|169239911|emb|CAM60939.1| Probable fatty-acid-CoA racemase Far [Mycobacterium abscessus]
Length=363
Score = 517 bits (1331), Expect = 1e-144, Method: Compositional matrix adjust.
Identities = 245/355 (70%), Positives = 287/355 (81%), Gaps = 0/355 (0%)
Query 5 GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIVDLD 64
GPLAGVKVIELGGIGPGPHA M+L+DLGADV+RVRRPGGL +P+E+ DL HRGKR+V+LD
Sbjct 9 GPLAGVKVIELGGIGPGPHAAMMLSDLGADVIRVRRPGGLAIPAEETDLFHRGKRLVNLD 68
Query 65 VKTQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPLAS 124
VK P+A+L L KADVLLD FRPG CER+GIGP++CA NPRLIFAR+TGWGQ GP+A
Sbjct 69 VKKDPEALLALVDKADVLLDPFRPGVCERIGIGPEECAKRNPRLIFARMTGWGQHGPMAD 128
Query 125 TAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGVGQ 184
AGHDINYLS TGAL + GY DRPPMPP+NLVADFGGGSML++ GI+ ALYERE+SG GQ
Sbjct 129 RAGHDINYLSLTGALGSMGYKDRPPMPPMNLVADFGGGSMLLVQGILAALYEREKSGKGQ 188
Query 185 VVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAIEP 244
V+D AMVDGVS LAQM WTM G L D+RE+ LLDGG+PFY YETSDGKYMAVG+IEP
Sbjct 189 VIDGAMVDGVSQLAQMQWTMYNNGLLFDEREAGLLDGGSPFYGTYETSDGKYMAVGSIEP 248
Query 245 QFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTPVL 304
QFFA L+ GLGL VP QLD A YP+M +F + F ++TRDEWT +F GTDACV+PVL
Sbjct 249 QFFAILVQGLGLDPESVPFQLDKARYPEMRKMFDDAFKTKTRDEWTEIFIGTDACVSPVL 308
Query 305 AWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEINW 359
W EA N+HL+ R T++ GV QAAPAPRFSRTP+GP+ PP T + +I W
Sbjct 309 TWGEAKQNEHLRDRGTIVDVDGVTQAAPAPRFSRTPSGPLGAPPKDTTELSDIGW 363
>gi|262203639|ref|YP_003274847.1| alpha-methylacyl-CoA racemase [Gordonia bronchialis DSM 43247]
gi|262086986|gb|ACY22954.1| Alpha-methylacyl-CoA racemase [Gordonia bronchialis DSM 43247]
Length=370
Score = 414 bits (1065), Expect = 1e-113, Method: Compositional matrix adjust.
Identities = 205/352 (59%), Positives = 256/352 (73%), Gaps = 3/352 (0%)
Query 5 GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIVDLD 64
GPL+ ++VIE GIGPGPHA M+LADLGADVVRV+RPG L + D L RG+R+V+ +
Sbjct 13 GPLSAIRVIEFAGIGPGPHAAMMLADLGADVVRVQRPGSLPAEGRNADALLRGRRVVEAN 72
Query 65 VK--TQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPL 122
+K + +L L AKADV+++ FRPG ERLG GPDD SVNP L++ R+TGWGQ+GP
Sbjct 73 LKDPADRETILGLIAKADVVIEGFRPGVMERLGFGPDDLESVNPGLVYGRMTGWGQEGPR 132
Query 123 ASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGV 182
A+ AGHDINY+S TG L A G D P+PPLNL DFGGGSM +++G++ AL ER+ SG
Sbjct 133 ANLAGHDINYISLTGMLHAIGRKDDRPVPPLNLAGDFGGGSMFLVMGVLAALLERQSSGR 192
Query 183 GQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAI 242
GQVVDAAMVDG SVL QMMW +G G D R +LD GAP+Y YETSDGKYMAVGAI
Sbjct 193 GQVVDAAMVDGASVLGQMMWAFRGTGLWSDVRGVNMLDTGAPYYEVYETSDGKYMAVGAI 252
Query 243 EPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTP 302
EPQF+A LL+GLGL+ AD+P Q D+A + ++ ++F E F SRTRDEWT++F TDAC +P
Sbjct 253 EPQFYAELLNGLGLAGADLPEQNDIANWGKLKEVFTETFKSRTRDEWTKIFDDTDACTSP 312
Query 303 VLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRT-PAGPVRPPPAAATP 353
VL ++EA + H+ ARS ++ GV QA APRFSRT P P P AA P
Sbjct 313 VLTFAEAPEDPHMSARSNLVEIDGVMQAQVAPRFSRTQPETPEGPSRAATDP 364
>gi|343927798|ref|ZP_08767266.1| alpha-methylacyl-CoA racemase [Gordonia alkanivorans NBRC 16433]
gi|343762439|dbj|GAA14192.1| alpha-methylacyl-CoA racemase [Gordonia alkanivorans NBRC 16433]
Length=369
Score = 414 bits (1063), Expect = 1e-113, Method: Compositional matrix adjust.
Identities = 206/352 (59%), Positives = 254/352 (73%), Gaps = 3/352 (0%)
Query 5 GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIVDLD 64
GPL+ ++VIE GIGPGPHA M+LADLGADVVRV+RPG L P + D L RG+R+V+ +
Sbjct 13 GPLSSIRVIEFAGIGPGPHAAMLLADLGADVVRVQRPGTLPKPGVNADALLRGRRVVEAN 72
Query 65 VK--TQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPL 122
+K T +L+L AKADV+++ FRPG ERLG GPDD VNP L++ R+TGWGQ+GP
Sbjct 73 LKDETDRATILDLVAKADVIIEGFRPGVMERLGFGPDDLTEVNPGLVYGRMTGWGQEGPR 132
Query 123 ASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGV 182
A+ AGHDINY+S TG L A G D P+PPLNL DFGGGSM +++G++ AL ER SG
Sbjct 133 ANLAGHDINYISLTGLLHAIGRKDDRPVPPLNLAGDFGGGSMFLVVGVLAALLERGISGK 192
Query 183 GQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAI 242
GQVVDAAMVDG SVL QMMW +G G D R + +LD GAP+Y YETSDGKYMAVGAI
Sbjct 193 GQVVDAAMVDGASVLGQMMWAFRGTGLWSDTRGTNMLDTGAPYYEVYETSDGKYMAVGAI 252
Query 243 EPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTP 302
EPQF+A LL GLGL AD+P Q D+A + ++ +IF E F SRTRDEW +VF GTDAC +P
Sbjct 253 EPQFYAELLKGLGLEDADLPAQNDIANWGKLKEIFTETFKSRTRDEWAKVFDGTDACTSP 312
Query 303 VLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRT-PAGPVRPPPAAATP 353
VL ++EA + H+ AR+ ++ GV QA APRFSRT P P P A P
Sbjct 313 VLTFAEAPTDPHMAARANLVDIDGVTQAQVAPRFSRTQPETPAGPSTEAVDP 364
>gi|257056362|ref|YP_003134194.1| putative acyl-CoA transferase/carnitine dehydratase [Saccharomonospora
viridis DSM 43017]
gi|256586234|gb|ACU97367.1| predicted acyl-CoA transferase/carnitine dehydratase [Saccharomonospora
viridis DSM 43017]
Length=358
Score = 412 bits (1059), Expect = 4e-113, Method: Compositional matrix adjust.
Identities = 210/337 (63%), Positives = 254/337 (76%), Gaps = 7/337 (2%)
Query 5 GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIVDLD 64
GPL G++V+ELGGIGPGPHA M+L DLGADVVR+ RPG T RD L RG+R V D
Sbjct 3 GPLTGLRVVELGGIGPGPHAAMILGDLGADVVRIDRPGAQT-----RDPLLRGRRSVVAD 57
Query 65 VKTQP--QAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPL 122
+KT +L L AKADVL++ +RPG ERLGIGP DC +VNPRL++ R+TGWGQDGPL
Sbjct 58 LKTDEGRDLVLRLVAKADVLVEGYRPGVAERLGIGPADCHAVNPRLVYGRMTGWGQDGPL 117
Query 123 ASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGV 182
A AGHDINY+S TGAL A G P+PPLNLV DFGGGSML+L GI+ AL+ERERSG
Sbjct 118 APRAGHDINYISLTGALHAIGRTGERPVPPLNLVGDFGGGSMLLLTGILSALWERERSGK 177
Query 183 GQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAI 242
GQVVDAAMVDG S+L QMMW M+G G+ D+R + LLDGGAPFY YE SDG+YMAVGA+
Sbjct 178 GQVVDAAMVDGASLLLQMMWAMRGQGAWSDERGTNLLDGGAPFYDTYECSDGRYMAVGAL 237
Query 243 EPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTP 302
EPQF+A LL GLGL A++P Q D AG+P + E F ++ R+ W +VFA TDACVTP
Sbjct 238 EPQFYAQLLEGLGLDPAELPEQYDRAGWPVLRARIGEAFKAQPREHWEKVFADTDACVTP 297
Query 303 VLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRT 339
VL+++EAA++ HL AR T+ G+ Q APAPRFSR+
Sbjct 298 VLSFAEAAHHPHLVARGTITELDGMPQPAPAPRFSRS 334
>gi|302526303|ref|ZP_07278645.1| L-carnitine dehydratase/bile acid-inducible protein F [Streptomyces
sp. AA4]
gi|302435198|gb|EFL07014.1| L-carnitine dehydratase/bile acid-inducible protein F [Streptomyces
sp. AA4]
Length=364
Score = 411 bits (1057), Expect = 9e-113, Method: Compositional matrix adjust.
Identities = 210/338 (63%), Positives = 256/338 (76%), Gaps = 3/338 (0%)
Query 5 GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGG-LTMPSEDRDLLHRGKRIVDL 63
GPL+G+KV+EL GIGPGPHA MVLADLGADVVRV RP G L + D L RG+R V
Sbjct 3 GPLSGLKVVELAGIGPGPHACMVLADLGADVVRVERPSGSLDLTGGKPDPLLRGRRSVAA 62
Query 64 DVKTQP--QAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGP 121
D+KT + +L LAAKADVL++ RPG ERLG+GPDDC S NPRL++ R+TGWGQ+GP
Sbjct 63 DLKTPEGRELVLRLAAKADVLIEGLRPGVTERLGVGPDDCFSANPRLVYGRMTGWGQEGP 122
Query 122 LASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSG 181
LA AGHDINYL TG L A G A P+PPLNLV DFGGGSM ++ G++ AL+E R+G
Sbjct 123 LAQRAGHDINYLGLTGVLHAIGRAGERPVPPLNLVGDFGGGSMFLIAGVLAALWECGRTG 182
Query 182 VGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGA 241
GQVVDAAMVDG +VL+QMMW ++G+GS D+R + LLDGGAPFY Y +DG+Y+AVGA
Sbjct 183 RGQVVDAAMVDGANVLSQMMWALRGLGSWSDERGTNLLDGGAPFYDTYVCADGRYVAVGA 242
Query 242 IEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVT 301
+EPQF+AALL+GLGL+A D+P QLD G+P + F F +RTRDEW +F GTDACVT
Sbjct 243 LEPQFYAALLNGLGLAAEDLPPQLDRDGWPTLRATFTRAFLTRTRDEWASIFDGTDACVT 302
Query 302 PVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRT 339
PVLA EAA + H+ ARS +IT G+ Q APAPRFSR+
Sbjct 303 PVLAPDEAAAHPHIAARSGLITLDGIVQPAPAPRFSRS 340
>gi|296270062|ref|YP_003652694.1| L-carnitine dehydratase/bile acid-inducible protein F [Thermobispora
bispora DSM 43833]
gi|296092849|gb|ADG88801.1| L-carnitine dehydratase/bile acid-inducible protein F [Thermobispora
bispora DSM 43833]
Length=363
Score = 405 bits (1041), Expect = 5e-111, Method: Compositional matrix adjust.
Identities = 207/355 (59%), Positives = 257/355 (73%), Gaps = 5/355 (1%)
Query 6 PLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIVDLDV 65
PL G +V+EL GIGPGPHA M+LADLGADVVRV RPG +P RD RG+R V +D+
Sbjct 4 PLTGTRVVELAGIGPGPHAAMILADLGADVVRVERPGAAGIPGAMRDPATRGRRTVVVDL 63
Query 66 KTQPQA---MLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPL 122
K QP+ +L+L A+ADVLL+ FRPG ERLG+GP++C + N RL++AR+TGWGQ GPL
Sbjct 64 K-QPEGKAKVLDLIARADVLLEGFRPGVTERLGLGPEECTARNKRLVYARVTGWGQTGPL 122
Query 123 ASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGV 182
A AGHDINY+S TGAL A G A+RP +PPLNLVADFGGGSML ++GI+ AL ERERSG
Sbjct 123 AQRAGHDINYISLTGALHAIGEAERP-IPPLNLVADFGGGSMLAVVGILAALLERERSGE 181
Query 183 GQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAI 242
GQVVD AMVDGVS L QM W M G RD+R S LLDGGAP+YR Y +DG ++AVG I
Sbjct 182 GQVVDIAMVDGVSSLMQMAWGMYSAGLWRDRRASNLLDGGAPYYRTYRCADGGFVAVGCI 241
Query 243 EPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTP 302
EPQF+A ++ LGL A +P + D + +P++++IF RF RD W +FA +DACVTP
Sbjct 242 EPQFYAEMVEKLGLDLATLPDRNDPSQWPKLHEIFERRFGEHPRDHWAELFADSDACVTP 301
Query 303 VLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEI 357
VL+ +E + H+ AR +V+T GV QA APRFSRT G V P A+ IDEI
Sbjct 302 VLSLAEVPRHPHIAARGSVVTVDGVTQAGVAPRFSRTAGGGVNPIGQTASDIDEI 356
>gi|120405530|ref|YP_955359.1| L-carnitine dehydratase/bile acid-inducible protein F [Mycobacterium
vanbaalenii PYR-1]
gi|119958348|gb|ABM15353.1| L-carnitine dehydratase/bile acid-inducible protein F [Mycobacterium
vanbaalenii PYR-1]
Length=364
Score = 401 bits (1030), Expect = 1e-109, Method: Compositional matrix adjust.
Identities = 198/347 (58%), Positives = 252/347 (73%), Gaps = 4/347 (1%)
Query 5 GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSED--RDLLHRGKRIVD 62
GPL G++V+EL GIGPGPHA M+L DLGADVVR+ RPG P+ D L R +R V
Sbjct 3 GPLQGLRVVELAGIGPGPHAAMILGDLGADVVRIERPGKGPGPATKPGGDYLLRNRRSVA 62
Query 63 LDVKTQPQ--AMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDG 120
++K++ +L L AKADVL++ FRPG ERLG+GP DCA VN +LI+AR+TGWGQDG
Sbjct 63 ANLKSEEDRDMVLRLIAKADVLIEGFRPGVTERLGLGPHDCAKVNEKLIYARMTGWGQDG 122
Query 121 PLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERS 180
P A AGHDINY+S GAL A G A P+PPLNLV DFGGGSM +L+G++ ALYERERS
Sbjct 123 PRAQQAGHDINYISLNGALHAIGRAGERPVPPLNLVGDFGGGSMFLLVGVLSALYERERS 182
Query 181 GVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVG 240
G GQVVDAAMVDG SVL+ MMW +G+G D+R + +LD GAP+Y YET+DGKY+AVG
Sbjct 183 GKGQVVDAAMVDGSSVLSMMMWAFRGMGMWSDERGTNMLDTGAPYYDTYETADGKYVAVG 242
Query 241 AIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACV 300
AIEPQF+A +L G+GL AD+P Q D++ +P++ + F + FA+ RD W +VFAGTDACV
Sbjct 243 AIEPQFYAEMLKGIGLDGADLPDQNDMSRWPELREAFTKAFAAHDRDHWAKVFAGTDACV 302
Query 301 TPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPP 347
TPVL+++E + H R T + +G APAPRFSR+ +PP
Sbjct 303 TPVLSFAEVESEPHNTERDTFYSENGSLYPAPAPRFSRSAPSAPKPP 349
>gi|15840584|ref|NP_335621.1| fatty acid-CoA racemase [Mycobacterium tuberculosis CDC1551]
gi|148822356|ref|YP_001287111.1| alpha-methylacyl-CoA racemase mcr [Mycobacterium tuberculosis
F11]
gi|253799815|ref|YP_003032816.1| alpha-methylacyl-CoA racemase mcr [Mycobacterium tuberculosis
KZN 1435]
16 more sequence titles
Length=395
Score = 400 bits (1029), Expect = 1e-109, Method: Compositional matrix adjust.
Identities = 201/347 (58%), Positives = 252/347 (73%), Gaps = 4/347 (1%)
Query 5 GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIVDLD 64
GPL+G++V+EL GIGPGPHA M+L DLGADVVR+ RP + S RD + R +RIV D
Sbjct 38 GPLSGLRVVELAGIGPGPHAAMILGDLGADVVRIDRPSSVDGIS--RDAMLRNRRIVTAD 95
Query 65 VKTQP--QAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPL 122
+K+ + L+L AKADVL++ +RPG ERLG+GP++CA VN RLI+AR+TGWGQ GP
Sbjct 96 LKSDQGLELALKLIAKADVLIEGYRPGVTERLGLGPEECAKVNDRLIYARMTGWGQTGPR 155
Query 123 ASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGV 182
+ AGHDINY+S G L A G D P+PPLNLV DFGGGSM +L+GI+ AL+ER+ SG
Sbjct 156 SQQAGHDINYISLNGILHAIGRGDERPVPPLNLVGDFGGGSMFLLVGILAALWERQSSGK 215
Query 183 GQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAI 242
GQVVDAAMVDG SVL QMMW M+ G D R + +LDGGAP+Y YE +DG+Y+AVGAI
Sbjct 216 GQVVDAAMVDGSSVLIQMMWAMRATGMWTDTRGANMLDGGAPYYDTYECADGRYVAVGAI 275
Query 243 EPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTP 302
EPQF+AA+L+GLGL AA++P Q D A +P++ + E FAS RD W VFA +DACVTP
Sbjct 276 EPQFYAAMLAGLGLDAAELPPQNDRARWPELRALLTEAFASHDRDHWGAVFANSDACVTP 335
Query 303 VLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPA 349
VLA+ E N H+ R+T A+G Q PAPRFSRT + RPP A
Sbjct 336 VLAFGEVHNEPHIIERNTFYEANGGWQPMPAPRFSRTASSQPRPPAA 382
>gi|240172481|ref|ZP_04751140.1| Mcr protein [Mycobacterium kansasii ATCC 12478]
Length=361
Score = 400 bits (1028), Expect = 2e-109, Method: Compositional matrix adjust.
Identities = 199/359 (56%), Positives = 256/359 (72%), Gaps = 11/359 (3%)
Query 5 GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRP----GGLTMPSEDRDLLHRGKRI 60
GPL G++V+EL GIGPGPHA M+L DLGADVVR+ RP GG+ +D + R +RI
Sbjct 3 GPLHGLRVVELAGIGPGPHAAMILGDLGADVVRIDRPAAGSGGVA-----KDAMLRNRRI 57
Query 61 VDLDVKTQP--QAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQ 118
+ D+K+ + +L+L AKADVL++ +RPG ERLG+GP+DCA+VN RL++AR+TGWGQ
Sbjct 58 ITADLKSDQGRELVLKLVAKADVLIEGYRPGVTERLGLGPEDCATVNDRLVYARMTGWGQ 117
Query 119 DGPLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERE 178
GP + AGHDINY+S G L A G + P+PPLNLV DFGGGSM +L+GI+ AL+ER+
Sbjct 118 AGPRSQQAGHDINYISLNGILHAIGRVNERPVPPLNLVGDFGGGSMFLLVGILAALWERQ 177
Query 179 RSGVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMA 238
SG GQV+DAAMVDG SVL QMMW M+ G D R + +LDGGAP+Y YE +DG+Y+A
Sbjct 178 SSGKGQVIDAAMVDGSSVLVQMMWAMRATGMWTDVRGTNMLDGGAPYYDTYECADGRYVA 237
Query 239 VGAIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDA 298
VGAIEPQF+AA+LSGLGL AAD+P Q DV +P++ + + F RD W +VFA TDA
Sbjct 238 VGAIEPQFYAAMLSGLGLDAADLPAQNDVTRWPELRAVLTDAFGRHDRDHWAKVFADTDA 297
Query 299 CVTPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEI 357
CVTPVLA+ E N H+ R+T +G Q PAPRFSRT RPP AA + I+ +
Sbjct 298 CVTPVLAFGEVHNEPHIAERNTFYEVNGSPQPMPAPRFSRTAPDQPRPPVAAVSDIEAV 356
>gi|15608283|ref|NP_215659.1| alpha-methylacyl-CoA racemase [Mycobacterium tuberculosis H37Rv]
gi|31792338|ref|NP_854831.1| alpha-methylacyl-CoA racemase [Mycobacterium bovis AF2122/97]
gi|121637076|ref|YP_977299.1| putative alpha-methylacyl-CoA racemase mcr [Mycobacterium bovis
BCG str. Pasteur 1173P2]
79 more sequence titles
gi|148660930|ref|YP_001282453.1| putative alpha-methylacyl-CoA racemase Mcr [Mycobacterium tuberculosis
H37Ra]
gi|167969284|ref|ZP_02551561.1| alpha-methylacyl-CoA racemase mcr [Mycobacterium tuberculosis
H37Ra]
gi|224989549|ref|YP_002644236.1| putative alpha-methylacyl-CoA racemase [Mycobacterium bovis BCG
str. Tokyo 172]
gi|254231415|ref|ZP_04924742.1| alpha-methylacyl-CoA racemase mcr [Mycobacterium tuberculosis
C]
gi|254550142|ref|ZP_05140589.1| putative alpha-methylacyl-CoA racemase [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|289442574|ref|ZP_06432318.1| alpha-methylacyl-CoA racemase mcr [Mycobacterium tuberculosis
T46]
gi|289446732|ref|ZP_06436476.1| alpha-methylacyl-CoA racemase mcr [Mycobacterium tuberculosis
CPHL_A]
gi|289569141|ref|ZP_06449368.1| alpha-methylacyl-CoA racemase mcr [Mycobacterium tuberculosis
T17]
gi|289573799|ref|ZP_06454026.1| alpha-methylacyl-CoA racemase mcr [Mycobacterium tuberculosis
K85]
gi|289753210|ref|ZP_06512588.1| fatty acid-CoA racemase [Mycobacterium tuberculosis EAS054]
gi|289757237|ref|ZP_06516615.1| fatty acid-CoA racemase [Mycobacterium tuberculosis T85]
gi|289761285|ref|ZP_06520663.1| alpha-methylacyl-CoA racemase mcr [Mycobacterium tuberculosis
GM 1503]
gi|298524641|ref|ZP_07012050.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
gi|308231750|ref|ZP_07413636.2| alpha-methylacyl-CoA racemase mcr [Mycobacterium tuberculosis
SUMu001]
gi|308370049|ref|ZP_07420123.2| alpha-methylacyl-CoA racemase mcr [Mycobacterium tuberculosis
SUMu002]
gi|308370631|ref|ZP_07422178.2| alpha-methylacyl-CoA racemase mcr [Mycobacterium tuberculosis
SUMu003]
gi|308371880|ref|ZP_07426540.2| alpha-methylacyl-CoA racemase mcr [Mycobacterium tuberculosis
SUMu004]
gi|308373050|ref|ZP_07430849.2| alpha-methylacyl-CoA racemase mcr [Mycobacterium tuberculosis
SUMu005]
gi|308374228|ref|ZP_07435254.2| alpha-methylacyl-CoA racemase mcr [Mycobacterium tuberculosis
SUMu006]
gi|308375377|ref|ZP_07443680.2| alpha-methylacyl-CoA racemase mcr [Mycobacterium tuberculosis
SUMu007]
gi|308376640|ref|ZP_07439498.2| alpha-methylacyl-CoA racemase mcr [Mycobacterium tuberculosis
SUMu008]
gi|308377640|ref|ZP_07479875.2| alpha-methylacyl-CoA racemase mcr [Mycobacterium tuberculosis
SUMu009]
gi|308378851|ref|ZP_07484062.2| alpha-methylacyl-CoA racemase mcr [Mycobacterium tuberculosis
SUMu010]
gi|308379987|ref|ZP_07488299.2| alpha-methylacyl-CoA racemase mcr [Mycobacterium tuberculosis
SUMu011]
gi|339631208|ref|YP_004722850.1| alpha-methylacyl-CoA racemase [Mycobacterium africanum GM041182]
gi|60593962|pdb|1X74|A Chain A, Alpha-Methylacyl-Coa Racemase From Mycobacterium Tuberculosis-
Mutational And Structural Characterization Of The
Fold And Active Site
gi|60593963|pdb|1X74|B Chain B, Alpha-Methylacyl-Coa Racemase From Mycobacterium Tuberculosis-
Mutational And Structural Characterization Of The
Fold And Active Site
gi|60593964|pdb|1X74|C Chain C, Alpha-Methylacyl-Coa Racemase From Mycobacterium Tuberculosis-
Mutational And Structural Characterization Of The
Fold And Active Site
gi|60593965|pdb|1X74|D Chain D, Alpha-Methylacyl-Coa Racemase From Mycobacterium Tuberculosis-
Mutational And Structural Characterization Of The
Fold And Active Site
gi|134104380|pdb|2GCE|A Chain A, The 1,1-Proton Transfer Reaction Mechanism By Alpha-
Methylacyl-Coa Racemase Is Catalyzed By An AspartateHISTIDINE
PAIR AND INVOLVES A SMOOTH, METHIONINE- Rich Surface For
Binding The Fatty Acyl Moiety
gi|134104381|pdb|2GCE|B Chain B, The 1,1-Proton Transfer Reaction Mechanism By Alpha-
Methylacyl-Coa Racemase Is Catalyzed By An AspartateHISTIDINE
PAIR AND INVOLVES A SMOOTH, METHIONINE- Rich Surface For
Binding The Fatty Acyl Moiety
gi|134104382|pdb|2GCE|C Chain C, The 1,1-Proton Transfer Reaction Mechanism By Alpha-
Methylacyl-Coa Racemase Is Catalyzed By An AspartateHISTIDINE
PAIR AND INVOLVES A SMOOTH, METHIONINE- Rich Surface For
Binding The Fatty Acyl Moiety
gi|134104383|pdb|2GCE|D Chain D, The 1,1-Proton Transfer Reaction Mechanism By Alpha-
Methylacyl-Coa Racemase Is Catalyzed By An AspartateHISTIDINE
PAIR AND INVOLVES A SMOOTH, METHIONINE- Rich Surface For
Binding The Fatty Acyl Moiety
gi|134104384|pdb|2GCI|A Chain A, The 1,1-Proton Transfer Reaction Mechanism By Alpha-
Methylacyl-Coa Racemase Is Catalyzed By An AsparteHISTIDINE
PAIR AND INVOLVES A SMOOTH, METHIONINE- Rich Surface For Binding
The Fatty Acyl Moiety
gi|134104385|pdb|2GCI|B Chain B, The 1,1-Proton Transfer Reaction Mechanism By Alpha-
Methylacyl-Coa Racemase Is Catalyzed By An AsparteHISTIDINE
PAIR AND INVOLVES A SMOOTH, METHIONINE- Rich Surface For Binding
The Fatty Acyl Moiety
gi|134104386|pdb|2GCI|C Chain C, The 1,1-Proton Transfer Reaction Mechanism By Alpha-
Methylacyl-Coa Racemase Is Catalyzed By An AsparteHISTIDINE
PAIR AND INVOLVES A SMOOTH, METHIONINE- Rich Surface For Binding
The Fatty Acyl Moiety
gi|134104387|pdb|2GCI|D Chain D, The 1,1-Proton Transfer Reaction Mechanism By Alpha-
Methylacyl-Coa Racemase Is Catalyzed By An AsparteHISTIDINE
PAIR AND INVOLVES A SMOOTH, METHIONINE- Rich Surface For Binding
The Fatty Acyl Moiety
gi|134104388|pdb|2GD0|A Chain A, The 1,1-Proton Transfer Reaction Mechanism By Alpha-
Methylacyl-Coa Racemase Is Catalyzed By An AspartateHISTIDINE
PAIR AND INVOLVES A SMOOTH, METHIONINE- Rich Surface For
Binding The Fatty Acyl Moiety
gi|134104389|pdb|2GD0|B Chain B, The 1,1-Proton Transfer Reaction Mechanism By Alpha-
Methylacyl-Coa Racemase Is Catalyzed By An AspartateHISTIDINE
PAIR AND INVOLVES A SMOOTH, METHIONINE- Rich Surface For
Binding The Fatty Acyl Moiety
gi|134104390|pdb|2GD0|C Chain C, The 1,1-Proton Transfer Reaction Mechanism By Alpha-
Methylacyl-Coa Racemase Is Catalyzed By An AspartateHISTIDINE
PAIR AND INVOLVES A SMOOTH, METHIONINE- Rich Surface For
Binding The Fatty Acyl Moiety
gi|134104391|pdb|2GD0|D Chain D, The 1,1-Proton Transfer Reaction Mechanism By Alpha-
Methylacyl-Coa Racemase Is Catalyzed By An AspartateHISTIDINE
PAIR AND INVOLVES A SMOOTH, METHIONINE- Rich Surface For
Binding The Fatty Acyl Moiety
gi|134104392|pdb|2GD2|A Chain A, The 1,1-Proton Transfer Reaction Mechanism By Alpha-
Methylacyl-Coa Racemase Is Catalyzed By An AspartateHISTIDINE
PAIR AND INVOLVES A SMOOTH, METHIONINE- Rich Surface For
Binding The Fatty Acyl Moiety
gi|134104393|pdb|2GD2|B Chain B, The 1,1-Proton Transfer Reaction Mechanism By Alpha-
Methylacyl-Coa Racemase Is Catalyzed By An AspartateHISTIDINE
PAIR AND INVOLVES A SMOOTH, METHIONINE- Rich Surface For
Binding The Fatty Acyl Moiety
gi|134104394|pdb|2GD2|C Chain C, The 1,1-Proton Transfer Reaction Mechanism By Alpha-
Methylacyl-Coa Racemase Is Catalyzed By An AspartateHISTIDINE
PAIR AND INVOLVES A SMOOTH, METHIONINE- Rich Surface For
Binding The Fatty Acyl Moiety
gi|134104395|pdb|2GD2|D Chain D, The 1,1-Proton Transfer Reaction Mechanism By Alpha-
Methylacyl-Coa Racemase Is Catalyzed By An AspartateHISTIDINE
PAIR AND INVOLVES A SMOOTH, METHIONINE- Rich Surface For
Binding The Fatty Acyl Moiety
gi|134104396|pdb|2GD6|A Chain A, The 1,1-Proton Transfer Reaction Mechanism By Alpha-
Methylacyl-Coa Racemase Is Catalyzed By An AspartateHISTIDINE
PAIR AND INVOLVES A SMOOTH, METHIONINE- Rich Surface For
Binding The Fatty Acyl Moiety
gi|134104397|pdb|2GD6|B Chain B, The 1,1-Proton Transfer Reaction Mechanism By Alpha-
Methylacyl-Coa Racemase Is Catalyzed By An AspartateHISTIDINE
PAIR AND INVOLVES A SMOOTH, METHIONINE- Rich Surface For
Binding The Fatty Acyl Moiety
gi|134104398|pdb|2GD6|C Chain C, The 1,1-Proton Transfer Reaction Mechanism By Alpha-
Methylacyl-Coa Racemase Is Catalyzed By An AspartateHISTIDINE
PAIR AND INVOLVES A SMOOTH, METHIONINE- Rich Surface For
Binding The Fatty Acyl Moiety
gi|134104399|pdb|2GD6|D Chain D, The 1,1-Proton Transfer Reaction Mechanism By Alpha-
Methylacyl-Coa Racemase Is Catalyzed By An AspartateHISTIDINE
PAIR AND INVOLVES A SMOOTH, METHIONINE- Rich Surface For
Binding The Fatty Acyl Moiety
gi|2117181|emb|CAB09031.1| PROBABLE ALPHA-METHYLACYL-CoA RACEMASE MCR (2-methylacyl-CoA
racemase) (2-arylpropionyl-CoA epimerase ) [Mycobacterium tuberculosis
H37Rv]
gi|31617926|emb|CAD94036.1| PROBABLE ALPHA-METHYLACYL-COA RACEMASE MCR (2-methylacyl-CoA
racemase) (2-arylpropionyl-CoA epimerase ) [Mycobacterium bovis
AF2122/97]
gi|121492723|emb|CAL71192.1| Probable alpha-methylacyl-CoA racemase mcr [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|124600474|gb|EAY59484.1| alpha-methylacyl-CoA racemase mcr [Mycobacterium tuberculosis
C]
gi|148505082|gb|ABQ72891.1| putative alpha-methylacyl-CoA racemase Mcr [Mycobacterium tuberculosis
H37Ra]
gi|224772662|dbj|BAH25468.1| putative alpha-methylacyl-CoA racemase [Mycobacterium bovis BCG
str. Tokyo 172]
gi|289415493|gb|EFD12733.1| alpha-methylacyl-CoA racemase mcr [Mycobacterium tuberculosis
T46]
gi|289419690|gb|EFD16891.1| alpha-methylacyl-CoA racemase mcr [Mycobacterium tuberculosis
CPHL_A]
gi|289538230|gb|EFD42808.1| alpha-methylacyl-CoA racemase mcr [Mycobacterium tuberculosis
K85]
gi|289542895|gb|EFD46543.1| alpha-methylacyl-CoA racemase mcr [Mycobacterium tuberculosis
T17]
gi|289693797|gb|EFD61226.1| fatty acid-CoA racemase [Mycobacterium tuberculosis EAS054]
gi|289708791|gb|EFD72807.1| alpha-methylacyl-CoA racemase mcr [Mycobacterium tuberculosis
GM 1503]
gi|289712801|gb|EFD76813.1| fatty acid-CoA racemase [Mycobacterium tuberculosis T85]
gi|298494435|gb|EFI29729.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
gi|308216228|gb|EFO75627.1| alpha-methylacyl-CoA racemase mcr [Mycobacterium tuberculosis
SUMu001]
gi|308325430|gb|EFP14281.1| alpha-methylacyl-CoA racemase mcr [Mycobacterium tuberculosis
SUMu002]
gi|308331417|gb|EFP20268.1| alpha-methylacyl-CoA racemase mcr [Mycobacterium tuberculosis
SUMu003]
gi|308335227|gb|EFP24078.1| alpha-methylacyl-CoA racemase mcr [Mycobacterium tuberculosis
SUMu004]
gi|308339035|gb|EFP27886.1| alpha-methylacyl-CoA racemase mcr [Mycobacterium tuberculosis
SUMu005]
gi|308342703|gb|EFP31554.1| alpha-methylacyl-CoA racemase mcr [Mycobacterium tuberculosis
SUMu006]
gi|308346589|gb|EFP35440.1| alpha-methylacyl-CoA racemase mcr [Mycobacterium tuberculosis
SUMu007]
gi|308350512|gb|EFP39363.1| alpha-methylacyl-CoA racemase mcr [Mycobacterium tuberculosis
SUMu008]
gi|308355160|gb|EFP44011.1| alpha-methylacyl-CoA racemase mcr [Mycobacterium tuberculosis
SUMu009]
gi|308359115|gb|EFP47966.1| alpha-methylacyl-CoA racemase mcr [Mycobacterium tuberculosis
SUMu010]
gi|308363034|gb|EFP51885.1| alpha-methylacyl-CoA racemase mcr [Mycobacterium tuberculosis
SUMu011]
gi|323720424|gb|EGB29518.1| alpha-methylacyl-CoA racemase mcr [Mycobacterium tuberculosis
CDC1551A]
gi|326902766|gb|EGE49699.1| alpha-methylacyl-CoA racemase mcr [Mycobacterium tuberculosis
W-148]
gi|339330564|emb|CCC26232.1| putative alpha-methylacyl-CoA racemase MCR (2-methylacyl-CoA
racemase) [Mycobacterium africanum GM041182]
gi|341601092|emb|CCC63764.1| probable alpha-methylacyl-CoA racemase mcr [Mycobacterium bovis
BCG str. Moreau RDJ]
gi|344218974|gb|AEM99604.1| alpha-methylacyl-CoA racemase [Mycobacterium tuberculosis CTRI-2]
Length=360
Score = 400 bits (1027), Expect = 3e-109, Method: Compositional matrix adjust.
Identities = 201/347 (58%), Positives = 252/347 (73%), Gaps = 4/347 (1%)
Query 5 GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIVDLD 64
GPL+G++V+EL GIGPGPHA M+L DLGADVVR+ RP + S RD + R +RIV D
Sbjct 3 GPLSGLRVVELAGIGPGPHAAMILGDLGADVVRIDRPSSVDGIS--RDAMLRNRRIVTAD 60
Query 65 VKTQP--QAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPL 122
+K+ + L+L AKADVL++ +RPG ERLG+GP++CA VN RLI+AR+TGWGQ GP
Sbjct 61 LKSDQGLELALKLIAKADVLIEGYRPGVTERLGLGPEECAKVNDRLIYARMTGWGQTGPR 120
Query 123 ASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGV 182
+ AGHDINY+S G L A G D P+PPLNLV DFGGGSM +L+GI+ AL+ER+ SG
Sbjct 121 SQQAGHDINYISLNGILHAIGRGDERPVPPLNLVGDFGGGSMFLLVGILAALWERQSSGK 180
Query 183 GQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAI 242
GQVVDAAMVDG SVL QMMW M+ G D R + +LDGGAP+Y YE +DG+Y+AVGAI
Sbjct 181 GQVVDAAMVDGSSVLIQMMWAMRATGMWTDTRGANMLDGGAPYYDTYECADGRYVAVGAI 240
Query 243 EPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTP 302
EPQF+AA+L+GLGL AA++P Q D A +P++ + E FAS RD W VFA +DACVTP
Sbjct 241 EPQFYAAMLAGLGLDAAELPPQNDRARWPELRALLTEAFASHDRDHWGAVFANSDACVTP 300
Query 303 VLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPA 349
VLA+ E N H+ R+T A+G Q PAPRFSRT + RPP A
Sbjct 301 VLAFGEVHNEPHIIERNTFYEANGGWQPMPAPRFSRTASSQPRPPAA 347
>gi|289555070|ref|ZP_06444280.1| alpha-methylacyl-CoA racemase mcr [Mycobacterium tuberculosis
KZN 605]
gi|289439702|gb|EFD22195.1| alpha-methylacyl-CoA racemase mcr [Mycobacterium tuberculosis
KZN 605]
Length=383
Score = 399 bits (1026), Expect = 3e-109, Method: Compositional matrix adjust.
Identities = 201/347 (58%), Positives = 252/347 (73%), Gaps = 4/347 (1%)
Query 5 GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIVDLD 64
GPL+G++V+EL GIGPGPHA M+L DLGADVVR+ RP + S RD + R +RIV D
Sbjct 26 GPLSGLRVVELAGIGPGPHAAMILGDLGADVVRIDRPSSVDGIS--RDAMLRNRRIVTAD 83
Query 65 VKTQP--QAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPL 122
+K+ + L+L AKADVL++ +RPG ERLG+GP++CA VN RLI+AR+TGWGQ GP
Sbjct 84 LKSDQGLELALKLIAKADVLIEGYRPGVTERLGLGPEECAKVNDRLIYARMTGWGQTGPR 143
Query 123 ASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGV 182
+ AGHDINY+S G L A G D P+PPLNLV DFGGGSM +L+GI+ AL+ER+ SG
Sbjct 144 SQQAGHDINYISLNGILHAIGRGDERPVPPLNLVGDFGGGSMFLLVGILAALWERQSSGK 203
Query 183 GQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAI 242
GQVVDAAMVDG SVL QMMW M+ G D R + +LDGGAP+Y YE +DG+Y+AVGAI
Sbjct 204 GQVVDAAMVDGSSVLIQMMWAMRATGMWTDTRGANMLDGGAPYYDTYECADGRYVAVGAI 263
Query 243 EPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTP 302
EPQF+AA+L+GLGL AA++P Q D A +P++ + E FAS RD W VFA +DACVTP
Sbjct 264 EPQFYAAMLAGLGLDAAELPPQNDRARWPELRALLTEAFASHDRDHWGAVFANSDACVTP 323
Query 303 VLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPA 349
VLA+ E N H+ R+T A+G Q PAPRFSRT + RPP A
Sbjct 324 VLAFGEVHNEPHIIERNTFYEANGGWQPMPAPRFSRTASSQPRPPAA 370
>gi|312199516|ref|YP_004019577.1| L-carnitine dehydratase/bile acid-inducible protein F [Frankia
sp. EuI1c]
gi|311230852|gb|ADP83707.1| L-carnitine dehydratase/bile acid-inducible protein F [Frankia
sp. EuI1c]
Length=380
Score = 399 bits (1026), Expect = 3e-109, Method: Compositional matrix adjust.
Identities = 211/350 (61%), Positives = 255/350 (73%), Gaps = 7/350 (2%)
Query 5 GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRP---GGLTMPSEDRDLLHRGKRIV 61
GPLAG++V+EL GIGPGPHA MVLADLGADVVRV RP G + D L RG+R V
Sbjct 10 GPLAGLRVVELAGIGPGPHAAMVLADLGADVVRVERPATGGAIPGAPATGDHLLRGRRSV 69
Query 62 DLDVKTQ--PQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQD 119
LD+K + +L L +ADVL++ +RPG ERLG+GPD C NPRL++ R+TGWGQD
Sbjct 70 ALDLKDAAGKERLLALVERADVLIEGYRPGVAERLGVGPDVCLGRNPRLVYGRMTGWGQD 129
Query 120 GPLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERER 179
GP A TAGHD+NY+S TG L A G D P+ PLNLV DFGGGSM +L G++ AL+ERER
Sbjct 130 GPWAHTAGHDLNYISVTGILHAIGPRDGKPVVPLNLVGDFGGGSMFLLTGVLAALWERER 189
Query 180 SGVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAV 239
SG GQVVDAAMVDG SVLAQMMW + G D+R + +LDGGAP+Y Y +DG+++AV
Sbjct 190 SGAGQVVDAAMVDGASVLAQMMWAWRATGFWSDERGTNVLDGGAPYYDTYVCADGRHVAV 249
Query 240 GAIEPQFFAALLSGLGLS-AADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDA 298
GAIEPQF+AALL+GLGL+ A +P Q D AG+P + A F +RTRDEW VF GTDA
Sbjct 250 GAIEPQFYAALLAGLGLTDDAALPRQNDRAGWPALRARLAATFLTRTRDEWAAVFDGTDA 309
Query 299 CVTPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRT-PAGPVRPP 347
CVTPVL ++EA + HL AR T++T GVQQ APAPRFSRT PA P PP
Sbjct 310 CVTPVLTFAEATTHPHLTARGTLMTLDGVQQPAPAPRFSRTVPAVPSAPP 359
>gi|325003304|ref|ZP_08124416.1| predicted acyl-CoA transferase/carnitine dehydratase [Pseudonocardia
sp. P1]
Length=366
Score = 399 bits (1025), Expect = 4e-109, Method: Compositional matrix adjust.
Identities = 208/338 (62%), Positives = 250/338 (74%), Gaps = 4/338 (1%)
Query 5 GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRP-GGLTMPSEDR-DLLHRGKRIVD 62
GPLAG+KVIEL GIGPGPHA M+L DLGADVVR+ RP GG + S D D RG+R V
Sbjct 6 GPLAGLKVIELAGIGPGPHAAMILGDLGADVVRIDRPSGGFSPGSGDAPDPTVRGRRTVT 65
Query 63 LDVKTQP--QAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDG 120
D+K + +L L KADVLL+ +RPG ERLG+GPDDC + NPRL++ R+TGWGQDG
Sbjct 66 ADLKDPAGRETVLRLVEKADVLLEGYRPGVTERLGVGPDDCRTRNPRLVYGRMTGWGQDG 125
Query 121 PLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERS 180
P+A AGHDINY+S TGAL A G A P+PPLNLV DFGGGSML+++G++ AL+E S
Sbjct 126 PMAPRAGHDINYISMTGALHAIGRAGERPVPPLNLVGDFGGGSMLLVVGVLAALWEARAS 185
Query 181 GVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVG 240
G GQVVDAAMVDGVSVL QM W G G+ D+++S LLDG APFY Y +DG YMAVG
Sbjct 186 GEGQVVDAAMVDGVSVLNQMFWGFLGQGAWTDEKDSNLLDGHAPFYDTYACADGGYMAVG 245
Query 241 AIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACV 300
A+EPQF+A LL+GL L+ ++ Q D AG+P M F E FAS+ RDEW VF GTDAC
Sbjct 246 ALEPQFYAQLLAGLELTDDELGHQYDRAGWPAMRARFTEVFASKPRDEWAAVFEGTDACT 305
Query 301 TPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSR 338
TPVL++ EAA + HL AR T++TA GV QAAPAPRFSR
Sbjct 306 TPVLSFGEAAEDAHLAARGTIVTADGVPQAAPAPRFSR 343
>gi|111222800|ref|YP_713594.1| alpha-methylacyl-CoA racemase [Frankia alni ACN14a]
gi|111150332|emb|CAJ62029.1| Alpha-methylacyl-CoA racemase [Frankia alni ACN14a]
Length=368
Score = 398 bits (1023), Expect = 6e-109, Method: Compositional matrix adjust.
Identities = 203/354 (58%), Positives = 253/354 (72%), Gaps = 3/354 (0%)
Query 2 TTGGPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIV 61
+ GPLAG++V+EL GIGPGPHA M+LADLGADVVRV RPG + P + + RG+R+V
Sbjct 6 SAAGPLAGIRVVELAGIGPGPHAAMMLADLGADVVRVARPGSVPAPGVPAEPVQRGRRLV 65
Query 62 DLDV--KTQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQD 119
+ D+ +L+L A ADVL++ FRPG ERLG+GPDDCA NPRL++ R+TGWGQ
Sbjct 66 EADLGDPASRDGVLDLIAGADVLIEGFRPGVTERLGLGPDDCARRNPRLVYGRMTGWGQQ 125
Query 120 GPLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERER 179
GPLA GHDINYLS TG L A G A PP+PPLNLV DFGGGS +++GI+ AL ERER
Sbjct 126 GPLADRVGHDINYLSITGVLNAVGRAGEPPLPPLNLVGDFGGGSTYLVVGILAALVERER 185
Query 180 SGVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAV 239
SG GQV+DAA+VDG S+LA M+W ++G G D+R S LD GAPFY Y T+DG+YMAV
Sbjct 186 SGRGQVIDAAIVDGASLLAHMVWGLRGRGRWNDERGSNRLDTGAPFYDVYATADGRYMAV 245
Query 240 GAIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDAC 299
GA+EP+F+A ++GLGL A +P Q D A +P++ + F + FA RTRDEW VF DAC
Sbjct 246 GALEPRFYATFVTGLGLDPATLPGQDDRARWPELREAFTKAFAGRTRDEWAAVFDPLDAC 305
Query 300 VTPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRT-PAGPVRPPPAAAT 352
VTPVL + EA + H+ AR +I GV Q APAPRFSR+ PA P PP A T
Sbjct 306 VTPVLDFDEATAHPHMAAREVLIDVAGVTQPAPAPRFSRSVPAAPRVPPRTAVT 359
>gi|312197060|ref|YP_004017121.1| L-carnitine dehydratase/bile acid-inducible protein F [Frankia
sp. EuI1c]
gi|311228396|gb|ADP81251.1| L-carnitine dehydratase/bile acid-inducible protein F [Frankia
sp. EuI1c]
Length=360
Score = 398 bits (1023), Expect = 6e-109, Method: Compositional matrix adjust.
Identities = 209/355 (59%), Positives = 257/355 (73%), Gaps = 6/355 (1%)
Query 5 GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIVDLD 64
GPL G++V+EL G+GPGPHAGM+LADLGADVV V RP + D D L RG+ +LD
Sbjct 3 GPLTGLRVLELAGLGPGPHAGMILADLGADVVHVSRP---HEQAPDSDFLLRGRTATELD 59
Query 65 VKTQP--QAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPL 122
+K+ L LAA ADVL+D FRPG ERLG+GP C + NPRL++ARITGWGQDGPL
Sbjct 60 LKSPAGRDRALALAAGADVLIDPFRPGVLERLGLGPAACLAANPRLVYARITGWGQDGPL 119
Query 123 ASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGV 182
A+ AGHDINY++ TG L A G+A P+PPLNLV DFGGGSM +L+GI+ AL+ERERSG
Sbjct 120 AARAGHDINYIALTGVLNAIGHAGDRPVPPLNLVGDFGGGSMFLLVGILAALWERERSGA 179
Query 183 GQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAI 242
GQVVDAAMVDGVSVL+QM+W+ + G D+R + LD GAP+Y YE +DG+Y+AVGA+
Sbjct 180 GQVVDAAMVDGVSVLSQMIWSFRADGRWSDRRGTNALDSGAPYYDTYECADGRYVAVGAV 239
Query 243 EPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTP 302
EP+F+A LL GLGL+AAD+P Q D AG+P + D A F SR RDEW VFA DACVTP
Sbjct 240 EPKFYAQLLDGLGLAAADLPAQRDRAGWPLLRDRIAAAFRSRGRDEWAVVFADRDACVTP 299
Query 303 VLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRT-PAGPVRPPPAAATPIDE 356
VL+++EA ++ L R T G Q APAPRFSR+ PA P RP A A I +
Sbjct 300 VLSFAEAPDHPQLATRRTFAPVAGDLQPAPAPRFSRSAPAAPSRPRRAGADAIAQ 354
>gi|118473757|ref|YP_889430.1| alpha-methylacyl-CoA racemase [Mycobacterium smegmatis str. MC2
155]
gi|118175044|gb|ABK75940.1| alpha-methylacyl-CoA racemase, putative [Mycobacterium smegmatis
str. MC2 155]
Length=363
Score = 398 bits (1023), Expect = 6e-109, Method: Compositional matrix adjust.
Identities = 199/348 (58%), Positives = 253/348 (73%), Gaps = 5/348 (1%)
Query 5 GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPG-GLTMPSEDRDLLHRGKRIVDL 63
GPL G++V+EL GIGPGPHA M+L DLGADVVR+ RPG G +P+ DRD + R +R V
Sbjct 3 GPLQGLRVVELAGIGPGPHAAMILGDLGADVVRIERPGKGGGVPAGDRDAMLRNRRSVVA 62
Query 64 DVKTQPQA---MLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDG 120
D+K P+ +L+L AKADVL++ +RPG ERLG+GP+DCA VN RLI+AR+TGWGQDG
Sbjct 63 DLKA-PEGRDLVLQLVAKADVLIEGYRPGVTERLGLGPEDCAKVNERLIYARMTGWGQDG 121
Query 121 PLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERS 180
P A AGHDINY+S G L A G P+PPLNL DFGGGSM +L+GI+ ALYER+ S
Sbjct 122 PRALQAGHDINYISLNGTLHAVGRKGGRPVPPLNLAGDFGGGSMFLLVGILSALYERQAS 181
Query 181 GVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVG 240
G GQV+DAAMVDG +VL +MMW+ + G D+R + +LD GAP+Y YET+DGKY+AVG
Sbjct 182 GKGQVIDAAMVDGSAVLMEMMWSFRANGMWSDERGTNMLDTGAPYYDTYETADGKYIAVG 241
Query 241 AIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACV 300
AIEPQF+A LL GLGL AD+P Q D++ +P++ + FA+ FA+ R WT+VF GTDAC
Sbjct 242 AIEPQFYAELLKGLGLDGADLPAQNDISRWPELREAFAKAFAAHDRAHWTKVFEGTDACT 301
Query 301 TPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPP 348
TPVL+++E + H+ R+T G Q PAPRFSRT G PPP
Sbjct 302 TPVLSFAEVLDEPHVAERNTFYDDEGNLQPMPAPRFSRTQPGRPTPPP 349
>gi|41408736|ref|NP_961572.1| Mcr [Mycobacterium avium subsp. paratuberculosis K-10]
gi|41397094|gb|AAS04955.1| Mcr [Mycobacterium avium subsp. paratuberculosis K-10]
Length=360
Score = 398 bits (1022), Expect = 8e-109, Method: Compositional matrix adjust.
Identities = 204/352 (58%), Positives = 252/352 (72%), Gaps = 13/352 (3%)
Query 5 GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRP----GGLTMPSEDRDLLHRGKRI 60
GPL G++V+EL GIGPGPHA M+L DLGADVVR+ RP GG+ +D + R +RI
Sbjct 3 GPLQGLRVVELSGIGPGPHAAMILGDLGADVVRIDRPSGAPGGVV-----KDAMSRNRRI 57
Query 61 VDLDVKTQP--QAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQ 118
V D+K+ + +L+L AKADVL++ +RPG ERLG+GP DCA VN RLI+AR+TGWGQ
Sbjct 58 VTADLKSDQGRELVLKLVAKADVLIEGYRPGVTERLGLGPQDCAKVNDRLIYARMTGWGQ 117
Query 119 DGPLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERE 178
GP + AGHDINY+S G L A G A+ P+PPLNLV DFGGGSM +LLGI+ AL+ER+
Sbjct 118 TGPRSQQAGHDINYISLNGILHAIGRANERPVPPLNLVGDFGGGSMFLLLGILSALWERQ 177
Query 179 RSGVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMA 238
SG GQVVDAAMVDG SVL QMMW M+ G D R + LLDGGAP+Y YE +DG+Y+A
Sbjct 178 SSGKGQVVDAAMVDGSSVLVQMMWQMRASGMWTDARGTNLLDGGAPYYDTYECADGRYVA 237
Query 239 VGAIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDA 298
VGAIEPQF+AA+L+GLGL AD+P Q DV+ +P++ E+FASR RD W +VFA +DA
Sbjct 238 VGAIEPQFYAAMLAGLGLDGADLPGQNDVSRWPELRAALTEKFASRDRDHWAKVFADSDA 297
Query 299 CVTPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAA 350
CVTPVLA+ E H+ R+T G Q PAPRFSRT P P PAA
Sbjct 298 CVTPVLAFGEVQTEPHITERNTFYEVDGGLQPLPAPRFSRT--APQTPRPAA 347
>gi|340626158|ref|YP_004744610.1| putative alpha-methylacyl-CoA racemase MCR [Mycobacterium canettii
CIPT 140010059]
gi|340004348|emb|CCC43491.1| putative alpha-methylacyl-CoA racemase MCR (2-methylacyl-CoA
racemase) (2-arylpropionyl-CoA epimerase) [Mycobacterium canettii
CIPT 140010059]
Length=360
Score = 398 bits (1022), Expect = 8e-109, Method: Compositional matrix adjust.
Identities = 200/347 (58%), Positives = 251/347 (73%), Gaps = 4/347 (1%)
Query 5 GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIVDLD 64
GPL+G++V+EL GIGPGPHA M+L DLGADVVR+ RP + S RD + R +RIV D
Sbjct 3 GPLSGLRVVELAGIGPGPHAAMILGDLGADVVRIDRPSSVDGIS--RDAMLRNRRIVTAD 60
Query 65 VKTQP--QAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPL 122
+K+ + L+L AKADVL++ +RPG ERLG+GP++CA VN RLI+AR+TGWGQ GP
Sbjct 61 LKSDQGLELALKLIAKADVLIEGYRPGVTERLGLGPEECAKVNDRLIYARMTGWGQTGPR 120
Query 123 ASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGV 182
+ AGHDINY+S G L A G D P+PPLNLV DFGGGSM +L+GI+ AL+ER+ SG
Sbjct 121 SQQAGHDINYISLNGILHAIGRGDERPVPPLNLVGDFGGGSMFLLVGILAALWERQSSGK 180
Query 183 GQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAI 242
GQVVDAAMVDG SVL QMMW M+ G D R + +LDGGAP+Y YE +DG+Y+AVGAI
Sbjct 181 GQVVDAAMVDGSSVLIQMMWAMRATGMWTDTRGANMLDGGAPYYDTYECADGRYVAVGAI 240
Query 243 EPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTP 302
EPQF+AA+L+GLGL AA++P Q D A +P++ + E FA RD W VFA +DACVTP
Sbjct 241 EPQFYAAMLAGLGLDAAELPPQNDRARWPELRALLTEAFARHDRDHWGAVFANSDACVTP 300
Query 303 VLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPA 349
VLA+ E N H+ R+T A+G Q PAPRFSRT + RPP A
Sbjct 301 VLAFGEVHNEPHIIERNTFYEANGGWQPMPAPRFSRTASSQPRPPAA 347
>gi|118462940|ref|YP_880529.1| Mcr protein [Mycobacterium avium 104]
gi|254774160|ref|ZP_05215676.1| Mcr [Mycobacterium avium subsp. avium ATCC 25291]
gi|118164227|gb|ABK65124.1| Mcr protein [Mycobacterium avium 104]
Length=360
Score = 398 bits (1022), Expect = 9e-109, Method: Compositional matrix adjust.
Identities = 204/352 (58%), Positives = 252/352 (72%), Gaps = 13/352 (3%)
Query 5 GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRP----GGLTMPSEDRDLLHRGKRI 60
GPL G++V+EL GIGPGPHA M+L DLGADVVR+ RP GG+ +D + R +RI
Sbjct 3 GPLQGLRVVELSGIGPGPHAAMILGDLGADVVRIDRPSGAPGGVV-----KDAMSRNRRI 57
Query 61 VDLDVKTQP--QAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQ 118
V D+K+ + +L+L AKADVL++ +RPG ERLG+GP DCA VN RLI+AR+TGWGQ
Sbjct 58 VTADLKSDQGRELVLKLVAKADVLIEGYRPGVTERLGLGPQDCAKVNDRLIYARMTGWGQ 117
Query 119 DGPLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERE 178
GP + AGHDINY+S G L A G A+ P+PPLNLV DFGGGSM +LLGI+ AL+ER+
Sbjct 118 TGPRSQQAGHDINYISLNGILHAIGRANERPVPPLNLVGDFGGGSMFLLLGILSALWERQ 177
Query 179 RSGVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMA 238
SG GQVVDAAMVDG SVL QMMW M+ G D R + LLDGGAP+Y YE +DG+Y+A
Sbjct 178 SSGKGQVVDAAMVDGSSVLVQMMWQMRASGMWTDARGTNLLDGGAPYYDTYECADGRYVA 237
Query 239 VGAIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDA 298
VGAIEPQF+AA+L+GLGL AD+P Q DV+ +P++ E+FASR RD W +VFA +DA
Sbjct 238 VGAIEPQFYAAMLAGLGLDGADLPGQNDVSRWPELRAALTEKFASRDRDHWAKVFADSDA 297
Query 299 CVTPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAA 350
CVTPVLA+ E H+ R+T G Q PAPRFSRT P P PAA
Sbjct 298 CVTPVLAFGEVQTEPHITERNTFYEVDGGLQPLPAPRFSRT--APETPRPAA 347
>gi|336458775|gb|EGO37735.1| putative acyl-CoA transferase/carnitine dehydratase [Mycobacterium
avium subsp. paratuberculosis S397]
Length=360
Score = 397 bits (1021), Expect = 1e-108, Method: Compositional matrix adjust.
Identities = 203/352 (58%), Positives = 252/352 (72%), Gaps = 13/352 (3%)
Query 5 GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRP----GGLTMPSEDRDLLHRGKRI 60
GPL G++V+EL GIGPGPHA M+L DLGADVVR+ RP GG+ +D + R +RI
Sbjct 3 GPLQGLRVVELSGIGPGPHAAMILGDLGADVVRIDRPSGAPGGVV-----KDAMSRNRRI 57
Query 61 VDLDVKTQP--QAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQ 118
V D+K+ + +L+L AKADVL++ +RPG ERLG+GP DCA VN RLI+AR+TGWGQ
Sbjct 58 VTADLKSDQGRELVLKLVAKADVLIEGYRPGVTERLGLGPQDCAKVNDRLIYARMTGWGQ 117
Query 119 DGPLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERE 178
GP + AGHDINY+S G L A G A+ P+PPLNLV DFGGGSM ++LGI+ AL+ER+
Sbjct 118 TGPRSQQAGHDINYISLNGILHAIGRANERPVPPLNLVGDFGGGSMFLMLGILSALWERQ 177
Query 179 RSGVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMA 238
SG GQVVDAAMVDG SVL QMMW M+ G D R + LLDGGAP+Y YE +DG+Y+A
Sbjct 178 SSGKGQVVDAAMVDGSSVLVQMMWQMRASGMWTDARGTNLLDGGAPYYDTYECADGRYVA 237
Query 239 VGAIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDA 298
VGAIEPQF+AA+L+GLGL AD+P Q DV+ +P++ E+FASR RD W +VFA +DA
Sbjct 238 VGAIEPQFYAAMLAGLGLDGADLPGQNDVSRWPELRAALTEKFASRDRDHWAKVFADSDA 297
Query 299 CVTPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAA 350
CVTPVLA+ E H+ R+T G Q PAPRFSRT P P PAA
Sbjct 298 CVTPVLAFGEVQTEPHITERNTFYEVDGGLQPLPAPRFSRT--APQTPRPAA 347
>gi|226365035|ref|YP_002782818.1| alpha-methylacyl-CoA racemase [Rhodococcus opacus B4]
gi|226243525|dbj|BAH53873.1| alpha-methylacyl-CoA racemase [Rhodococcus opacus B4]
Length=365
Score = 395 bits (1015), Expect = 6e-108, Method: Compositional matrix adjust.
Identities = 204/355 (58%), Positives = 258/355 (73%), Gaps = 3/355 (0%)
Query 5 GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIVDLD 64
GPLAG++V+E G+GPGPHA +LADLGADVV V+RPG + P D + RG+R+V+ +
Sbjct 10 GPLAGIRVVEFAGLGPGPHAAALLADLGADVVCVQRPG-VIPPDGPYDQIQRGRRVVEAN 68
Query 65 VK--TQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPL 122
+K Q + +L L +ADV+++ FRPG ER+G+GPD C N RL++ R+TGWGQ+GPL
Sbjct 69 LKDPEQVEKVLGLIERADVVIEGFRPGVTERMGLGPDVCLKRNERLVYGRMTGWGQEGPL 128
Query 123 ASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGV 182
AS AGHDINY+S TG L A G P+PPLN+V DFGGGSM ++ GI+ AL ER+ SG
Sbjct 129 ASAAGHDINYISLTGVLHAIGRKGERPVPPLNMVGDFGGGSMFLIFGILSALVERQSSGK 188
Query 183 GQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAI 242
GQVVDAAMVDG L+ MMW +G G D+R LLD GAPFY YETSDGKYMAVG+I
Sbjct 189 GQVVDAAMVDGALALSHMMWAFRGRGVWSDERGVNLLDTGAPFYDTYETSDGKYMAVGSI 248
Query 243 EPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTP 302
EPQF+A LL GL L A++P Q+D++ +PQM +FAE+F S+TRDEW VF GTDACV+P
Sbjct 249 EPQFYALLLQGLELDPAELPQQMDMSAWPQMKKVFAEKFLSKTRDEWAAVFLGTDACVSP 308
Query 303 VLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEI 357
VL ++EA +N+HL AR ++I GV Q APAPRFSRTPAG PP ID +
Sbjct 309 VLTFAEAPSNEHLAARGSLIELDGVTQHAPAPRFSRTPAGAPTPPAREGVDIDTV 363
>gi|342861757|ref|ZP_08718403.1| Mcr [Mycobacterium colombiense CECT 3035]
gi|342130891|gb|EGT84187.1| Mcr [Mycobacterium colombiense CECT 3035]
Length=360
Score = 395 bits (1014), Expect = 7e-108, Method: Compositional matrix adjust.
Identities = 201/358 (57%), Positives = 257/358 (72%), Gaps = 15/358 (4%)
Query 5 GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRP----GGLTMPSEDRDLLHRGKRI 60
GPL G++V+EL GIGPGPHA M+L DLGADVVR+ RP GG+ +D + R +R+
Sbjct 3 GPLKGLRVVELAGIGPGPHAAMILGDLGADVVRIDRPSSGPGGVA-----KDAMMRNRRV 57
Query 61 VDLDVKTQPQA--MLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQ 118
V D+K+ +L+L AKADVL++ +RPG ERLG+GP+DCA VN RL++AR+TGWGQ
Sbjct 58 VTADLKSDEGRGLVLKLIAKADVLIEGYRPGVTERLGLGPEDCAKVNDRLVYARMTGWGQ 117
Query 119 DGPLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERE 178
GP + AGHDINY+S G L + G A+ P+PPLNLV DFGGGSM +LLGI+ AL+ER+
Sbjct 118 TGPRSQQAGHDINYISLNGILHSIGRANERPVPPLNLVGDFGGGSMFLLLGILSALWERQ 177
Query 179 RSGVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMA 238
SG GQVVDAAMVDG SVL QMMW M+ G D R + LLDGGAP+Y YE +DG+Y+A
Sbjct 178 TSGKGQVVDAAMVDGSSVLVQMMWQMRASGMWTDARGTNLLDGGAPYYDTYECADGRYVA 237
Query 239 VGAIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDA 298
VGAIEPQF+AA+L+GLGL AD+P Q DV+ +P++ + E+FAS+ RD W +VFA +DA
Sbjct 238 VGAIEPQFYAAMLAGLGLDGADLPGQNDVSRWPELRAVLTEKFASQDRDHWAKVFADSDA 297
Query 299 CVTPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDE 356
CVTP+LA+ E H+ R+T G Q PAPRFSRT P P PAA P+D+
Sbjct 298 CVTPILAFGEVLTEPHITERNTFYEVDGGLQPLPAPRFSRT--APETPRPAA--PVDD 351
>gi|229492996|ref|ZP_04386791.1| alpha-methylacyl-CoA racemase [Rhodococcus erythropolis SK121]
gi|229320026|gb|EEN85852.1| alpha-methylacyl-CoA racemase [Rhodococcus erythropolis SK121]
Length=366
Score = 395 bits (1014), Expect = 7e-108, Method: Compositional matrix adjust.
Identities = 196/359 (55%), Positives = 252/359 (71%), Gaps = 2/359 (0%)
Query 1 VTTGGPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRI 60
V GPLAG++++E G+GPGPHA +LAD+GAD+V V+R G + S D RG+RI
Sbjct 6 VEKKGPLAGIRIVEFAGLGPGPHAATLLADMGADIVIVQRAGQIPQDSNATDQTKRGRRI 65
Query 61 VDLDVK--TQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQ 118
V+ ++K +L+L +ADVL++ FRPG ER+G+GPD + NPRL++AR+TGWGQ
Sbjct 66 VEANLKDPADVAKVLDLLGRADVLIEGFRPGVMERMGLGPDVVSERNPRLVYARMTGWGQ 125
Query 119 DGPLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERE 178
+GPLA+ AGHDINY+S TG L A G P+PPLN+V DFGGGSM ++ GI+ AL ER
Sbjct 126 EGPLANAAGHDINYISLTGVLNAIGRKGERPVPPLNMVGDFGGGSMFLIFGILSALVERS 185
Query 179 RSGVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMA 238
SG GQVVDAAMVDG L+ MMW +G G D+R LLD GAPFY YETSDGKYMA
Sbjct 186 TSGKGQVVDAAMVDGTLALSHMMWAFRGRGVWSDERGVNLLDTGAPFYDTYETSDGKYMA 245
Query 239 VGAIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDA 298
VG+IEPQF+A LL GL L A +P Q+D + + M +F E+F S+TRDEW ++F GTDA
Sbjct 246 VGSIEPQFYALLLEGLELDPATLPHQMDTSKWDDMKKLFTEKFLSKTRDEWAKIFLGTDA 305
Query 299 CVTPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEI 357
CV+PVL ++EA +N+H+ AR ++I GV Q APAPRFSRTP P AT ID +
Sbjct 306 CVSPVLTFAEAPSNEHIAARGSLIELDGVTQHAPAPRFSRTPTTTPAAPAREATDIDTV 364
>gi|226304922|ref|YP_002764880.1| alpha-methylacyl-CoA racemase [Rhodococcus erythropolis PR4]
gi|226184037|dbj|BAH32141.1| probable alpha-methylacyl-CoA racemase [Rhodococcus erythropolis
PR4]
Length=361
Score = 394 bits (1012), Expect = 1e-107, Method: Compositional matrix adjust.
Identities = 195/355 (55%), Positives = 252/355 (71%), Gaps = 2/355 (0%)
Query 5 GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIVDLD 64
GPLAG++++E G+GPGPHA +LAD+GAD+V V+R G + S D + RG+RIV+ +
Sbjct 5 GPLAGIRIVEFAGLGPGPHAATLLADMGADIVIVQRAGQIPQDSNATDQIKRGRRIVEAN 64
Query 65 VK--TQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPL 122
+K +L+L +ADVL++ FRPG ER+G+GPD + NPRL++AR+TGWGQ+GPL
Sbjct 65 LKDPADVAKVLDLLGRADVLIEGFRPGVMERMGLGPDVVSERNPRLVYARMTGWGQEGPL 124
Query 123 ASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGV 182
A+ AGHDINY+S TG L A G P+PPLN+V DFGGGSM ++ GI+ AL ER SG
Sbjct 125 ANAAGHDINYISLTGVLNAIGRKGERPVPPLNMVGDFGGGSMFLIFGILSALVERSTSGK 184
Query 183 GQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAI 242
GQVVDAAMVDG L+ MMW +G G D+R LLD GAPFY YETSDGKYMAVG+I
Sbjct 185 GQVVDAAMVDGTLALSHMMWAFRGRGVWSDERGVNLLDTGAPFYDTYETSDGKYMAVGSI 244
Query 243 EPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTP 302
EPQF+A LL GL L A +P Q+D + + M +F E+F S+TRDEW ++F GTDACV+P
Sbjct 245 EPQFYALLLEGLELDPATLPHQMDTSKWDDMKTLFTEKFLSKTRDEWAKIFLGTDACVSP 304
Query 303 VLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEI 357
VL ++EA +N+H+ AR ++I GV Q APAPRFSRTP P AT ID +
Sbjct 305 VLTFAEAPSNEHIAARGSLIELDGVTQHAPAPRFSRTPTATPAAPAREATDIDTV 359
>gi|111022523|ref|YP_705495.1| alpha-methylacyl-CoA racemase [Rhodococcus jostii RHA1]
gi|110822053|gb|ABG97337.1| alpha-methylacyl-CoA racemase [Rhodococcus jostii RHA1]
Length=365
Score = 394 bits (1012), Expect = 1e-107, Method: Compositional matrix adjust.
Identities = 202/355 (57%), Positives = 258/355 (73%), Gaps = 3/355 (0%)
Query 5 GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIVDLD 64
GPLAG++V+E G+GPGPHA +LADLGADVV V+RPG + P D + RG+R+V+ +
Sbjct 10 GPLAGIRVVEFAGLGPGPHAAALLADLGADVVCVQRPG-VIPPDGPYDQIQRGRRVVEAN 68
Query 65 VK--TQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPL 122
+K Q + +L L +ADV+++ FRPG ER+G+GPD C N RL++ R+TGWGQ+GPL
Sbjct 69 LKDPEQVEKVLGLIERADVVIEGFRPGVTERMGLGPDVCLGRNERLVYGRMTGWGQEGPL 128
Query 123 ASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGV 182
AS AGHDINY+S TG L A G P+PPLN+V DFGGGSM ++ GI+ AL ER+ SG
Sbjct 129 ASAAGHDINYISLTGVLHAIGRKGERPVPPLNMVGDFGGGSMFLIFGILSALVERQTSGK 188
Query 183 GQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAI 242
GQVVDAAMVDG L+ MMW +G G D+R LLD GAPFY YETSDGKYMAVG+I
Sbjct 189 GQVVDAAMVDGALALSHMMWAFRGRGVWSDERGVNLLDTGAPFYDTYETSDGKYMAVGSI 248
Query 243 EPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTP 302
EPQF+A LL GL L A++P Q+D++ +PQM +FAE+F S+TRDEW +F GTDACV+P
Sbjct 249 EPQFYALLLQGLELDPAELPQQMDISAWPQMKKVFAEKFLSKTRDEWAAIFLGTDACVSP 308
Query 303 VLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEI 357
VL ++EA +N+H+ AR ++I GV Q APAPRFSRTPAG PP ID +
Sbjct 309 VLTFAEAPSNEHIAARGSLIDLDGVTQHAPAPRFSRTPAGAPTPPAREGVDIDTV 363
>gi|226349943|ref|YP_002777056.1| alpha-methylacyl-CoA racemase [Rhodococcus opacus B4]
gi|226245858|dbj|BAH47125.1| alpha-methylacyl-CoA racemase [Rhodococcus opacus B4]
Length=365
Score = 392 bits (1006), Expect = 6e-107, Method: Compositional matrix adjust.
Identities = 201/355 (57%), Positives = 257/355 (73%), Gaps = 3/355 (0%)
Query 5 GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIVDLD 64
GPLAG++V+E G+GPGPHA +LADLGADVV V+RPG + P D + RG+R+V+ +
Sbjct 10 GPLAGIRVVEFAGLGPGPHAAALLADLGADVVCVQRPG-VIPPDGPYDQIQRGRRVVEAN 68
Query 65 VK--TQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPL 122
+K Q + +L L +ADV+++ FRPG ER+G+GPD C N RL++ R+TGWGQ+GPL
Sbjct 69 LKDPEQVEKVLGLIERADVVIEGFRPGVTERMGLGPDVCLERNERLVYGRMTGWGQEGPL 128
Query 123 ASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGV 182
A AGHDINY+S TG L A G P+PPLN+V DFGGGSM ++ GI+ AL ER+ SG
Sbjct 129 AGAAGHDINYISLTGVLHAIGRKGERPVPPLNMVGDFGGGSMFLIFGILSALVERQTSGK 188
Query 183 GQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAI 242
GQVVDAAMVDG L+ MMW +G G D+R LLD GAPFY YETSDGKYMAVG+I
Sbjct 189 GQVVDAAMVDGALALSHMMWAFRGRGVWSDERGVNLLDTGAPFYDTYETSDGKYMAVGSI 248
Query 243 EPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTP 302
EPQF+A LL GL L A++P Q+DV+ +PQM +FAE+F S+TRDEW +F GTDACV+P
Sbjct 249 EPQFYALLLQGLELDPAELPQQMDVSAWPQMKKVFAEKFLSKTRDEWAAIFLGTDACVSP 308
Query 303 VLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEI 357
VL ++EA +N+H+ AR +++ GV Q APAPRFSRTPAG PP ID +
Sbjct 309 VLTFAEAPSNEHIAARGSLVDLDGVTQHAPAPRFSRTPAGAPTPPAREGVDIDTV 363
>gi|54312031|dbj|BAD66657.1| alpha-Methylacyl-CoA racemase [Mycobacterium sp. P101]
Length=360
Score = 391 bits (1005), Expect = 9e-107, Method: Compositional matrix adjust.
Identities = 193/348 (56%), Positives = 242/348 (70%), Gaps = 1/348 (0%)
Query 5 GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIVDLD 64
GPL G++V+EL GIGPGPHA M+L DLGADVVRV RP P++D L +R DL
Sbjct 3 GPLHGLRVVELAGIGPGPHAAMILGDLGADVVRVDRPTASNSPAKDAMLRNRRSVTADLK 62
Query 65 VKTQPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPLAS 124
Q +L+L AKADVL++ FRPG ERLG+GP+DCA VN +L++AR+TGWGQDGP A
Sbjct 63 SAEGKQFVLDLVAKADVLIEGFRPGVTERLGLGPEDCAKVNEKLVYARMTGWGQDGPRAL 122
Query 125 TAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGVGQ 184
AGHDINY+S G L A G P+PPLNL DFGGGSM +LLGI+ AL+ER+ SG GQ
Sbjct 123 QAGHDINYISLNGVLHAIGRKGEKPVPPLNLAGDFGGGSMFLLLGILSALFERQTSGKGQ 182
Query 185 VVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAIEP 244
VVDAAM+DG SVL QMMW+ + G D+R + +LD GAP+Y YET+DGK+ A+GAIEP
Sbjct 183 VVDAAMIDGSSVLIQMMWSFRSQGLWSDERGTNMLDTGAPYYDTYETADGKHFAIGAIEP 242
Query 245 QFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTPVL 304
QF+A LL+ LGL A++P Q D+A + ++ F E F ++TRDEW ++FAG+DAC TPVL
Sbjct 243 QFYAELLAKLGLDQAELPGQNDMARWEELRTTFTEVFKTKTRDEWAQIFAGSDACATPVL 302
Query 305 AWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRT-PAGPVRPPPAAA 351
A+ E H+ R T Q PAPRFSR+ P P RPP A
Sbjct 303 AFGEVLTEPHVAERDTFYETGSGLQPMPAPRFSRSRPGQPTRPPVVGA 350
>gi|254820698|ref|ZP_05225699.1| Mcr [Mycobacterium intracellulare ATCC 13950]
Length=360
Score = 390 bits (1003), Expect = 1e-106, Method: Compositional matrix adjust.
Identities = 200/356 (57%), Positives = 252/356 (71%), Gaps = 15/356 (4%)
Query 5 GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRP----GGLTMPSEDRDLLHRGKRI 60
GPL G++V+EL GIGPGPHA M+L DLGADVVR+ RP GG+ +D + R +R+
Sbjct 3 GPLKGLRVVELAGIGPGPHAAMILGDLGADVVRIDRPSSGPGGVA-----KDAMMRNRRV 57
Query 61 VDLDVKTQPQA--MLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQ 118
V D+K+ +L+L AKADVL++ +RPG ERLG+GP+DCA VN RL++AR+TGWGQ
Sbjct 58 VTADLKSDEGRGLVLKLIAKADVLIEGYRPGVTERLGLGPEDCAKVNDRLVYARMTGWGQ 117
Query 119 DGPLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERE 178
GP + AGHDINY+S G L + G + P+PPLNLV DFGGGSM +LLGI+ AL+ER+
Sbjct 118 TGPRSQQAGHDINYISLNGILHSIGRVNERPVPPLNLVGDFGGGSMFLLLGILSALWERQ 177
Query 179 RSGVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMA 238
SG GQVVDAAMVDG SVL QMMW M+ G D R + LLDGGAP+Y YE +DG+Y+A
Sbjct 178 TSGKGQVVDAAMVDGSSVLVQMMWQMRSSGMWTDARGTNLLDGGAPYYDTYECADGRYVA 237
Query 239 VGAIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDA 298
VGAIEPQF+AA+L+GLGL AD+P Q DV +P++ + E+FAS+ RD W +VFA +DA
Sbjct 238 VGAIEPQFYAAMLAGLGLDGADLPGQNDVGRWPELRAVLTEKFASQDRDHWAKVFADSDA 297
Query 299 CVTPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPI 354
CVTPVLA+ E H+ R T G Q PAPRFSRT P P P ATP+
Sbjct 298 CVTPVLAFGEVQTEPHITERDTFYEVDGGLQPRPAPRFSRT--APETPRP--ATPV 349
>gi|326384845|ref|ZP_08206520.1| alpha-methylacyl-CoA racemase [Gordonia neofelifaecis NRRL B-59395]
gi|326196364|gb|EGD53563.1| alpha-methylacyl-CoA racemase [Gordonia neofelifaecis NRRL B-59395]
Length=369
Score = 388 bits (997), Expect = 7e-106, Method: Compositional matrix adjust.
Identities = 197/347 (57%), Positives = 248/347 (72%), Gaps = 6/347 (1%)
Query 5 GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIVDLD 64
GPLAG++VIE GIGPGPHA M+LADLGADV+RV+RPG L P+ + D L RG+R+++ +
Sbjct 13 GPLAGIRVIEFAGIGPGPHAAMLLADLGADVLRVQRPGQLPDPNRNADALLRGRRMIEAN 72
Query 65 VKT--QPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPL 122
+K + +L L AKADV+++ FRPG ERLG GPDD +VNP L++ R+TGWGQDGP
Sbjct 73 LKNPADRETILNLVAKADVVIEGFRPGVMERLGFGPDDLHAVNPALVYGRMTGWGQDGPR 132
Query 123 ASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGV 182
A AGHD+NY+S TG L A G D P PPLNLV DFGGGSM +++G++ AL ER SG
Sbjct 133 AELAGHDMNYISLTGMLHAIGRPDEKPTPPLNLVGDFGGGSMFLVMGVLAALVERSVSGK 192
Query 183 GQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAI 242
G V+DAAM DG SVL QMMW +G G +D+R LLD GAPFY YETSDGK+MAVGAI
Sbjct 193 GDVIDAAMCDGASVLGQMMWAFRGTGLWQDRRGVNLLDTGAPFYEVYETSDGKWMAVGAI 252
Query 243 EPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTP 302
EPQF+A LL GL L +P QLDV + ++ F + F ++TRDEW +F GTDAC +P
Sbjct 253 EPQFYAELLKGLELDPESLPNQLDVTKWGELKQTFTDTFKTKTRDEWAAIFDGTDACTSP 312
Query 303 VLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSR----TPAGPVR 345
+L ++EA + HL AR T++ GV QA APRF+R TP GPVR
Sbjct 313 ILDYTEAPADPHLAARGTLVEIDGVMQAQVAPRFARSATETPTGPVR 359
>gi|288924215|ref|ZP_06418249.1| L-carnitine dehydratase/bile acid-inducible protein F [Frankia
sp. EUN1f]
gi|288344440|gb|EFC78935.1| L-carnitine dehydratase/bile acid-inducible protein F [Frankia
sp. EUN1f]
Length=373
Score = 385 bits (990), Expect = 4e-105, Method: Compositional matrix adjust.
Identities = 203/352 (58%), Positives = 253/352 (72%), Gaps = 8/352 (2%)
Query 5 GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIVDLD 64
GPL G++V+EL GIGPGPHA M+LADLGADVVRV RP S +R+ L RG+R V D
Sbjct 2 GPLTGLRVLELAGIGPGPHAAMILADLGADVVRVDRPA-----STEREPLLRGRRSVIAD 56
Query 65 VKTQP--QAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPL 122
+KT + +L L AKAD+L++ +RPG ERLG+GP +C +VNPRLI+ R+TGWGQDGP
Sbjct 57 LKTDAGRELVLRLVAKADILIEGYRPGVAERLGVGPAECQAVNPRLIYGRMTGWGQDGPW 116
Query 123 ASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGV 182
A AGHDINY+S TG L A G A P+PPLNL DFGGGSM ++ G++ AL+ERERSG+
Sbjct 117 ARQAGHDINYISLTGILHAVGRAGERPVPPLNLAGDFGGGSMFLITGVLAALWERERSGL 176
Query 183 GQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAI 242
GQV+DAAMVDG SVLAQMMW+M+ +G D R + LLDG APFY YE +DG ++AVG I
Sbjct 177 GQVIDAAMVDGASVLAQMMWSMRSLGGWTDDRGANLLDGAAPFYDTYECADGGHVAVGCI 236
Query 243 EPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTP 302
EPQF+A +L+ LGL AA +P Q D AG+P + A+ F + RD W +VF G+DACVTP
Sbjct 237 EPQFYAQMLALLGLDAAALPDQYDRAGWPTLRATLADAFRAHPRDHWAKVFDGSDACVTP 296
Query 303 VLAWSEAANNDHLKARSTVITAHGVQQAAPAP-RFSRTPAGPVRPPPAAATP 353
VL+W EA + HL AR T++ HG Q APAP +R GP RPP A TP
Sbjct 297 VLSWGEAIEHPHLAARGTLLDLHGAPQPAPAPGSRARCRTGPPRPPSPALTP 348
>gi|296170032|ref|ZP_06851636.1| alpha-methylacyl-CoA racemase [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295895300|gb|EFG75009.1| alpha-methylacyl-CoA racemase [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=361
Score = 385 bits (989), Expect = 5e-105, Method: Compositional matrix adjust.
Identities = 198/359 (56%), Positives = 253/359 (71%), Gaps = 11/359 (3%)
Query 5 GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRP----GGLTMPSEDRDLLHRGKRI 60
GPL G++V+EL GIGPGPHA M+L DLGADVVR+ RP GG+ +D + R +R+
Sbjct 3 GPLKGLRVVELAGIGPGPHAAMILGDLGADVVRIDRPSSGPGGVA-----KDAMLRNRRV 57
Query 61 VDLDVKTQP--QAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQ 118
V +D+K+ +L+L AKADVL++ FRPG ERLG+GP+ CA VN RLI+AR+TGWGQ
Sbjct 58 VTVDLKSDEGRAVVLKLVAKADVLIEGFRPGVTERLGLGPEQCAEVNERLIYARMTGWGQ 117
Query 119 DGPLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERE 178
GP + AGHDINY+S G L A G A+ P+PPLNLV DFGGGSM +L+GI+ AL+ER+
Sbjct 118 TGPRSQQAGHDINYISLNGILHAIGRANERPVPPLNLVGDFGGGSMFLLVGILSALWERQ 177
Query 179 RSGVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMA 238
SG GQV+DAAMVDG SVL QMMW M+G+G D R + +LDGGAP+Y YE +DG+Y+A
Sbjct 178 NSGKGQVIDAAMVDGSSVLIQMMWAMRGLGMWSDARGTNMLDGGAPYYDTYECADGRYVA 237
Query 239 VGAIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDA 298
VGAIEPQF+AA+L+GLGL AA +P Q DV +P++ FA+ RD W +VFA +DA
Sbjct 238 VGAIEPQFYAAMLAGLGLDAAGLPAQNDVTRWPELRAALTAAFAAHDRDHWAKVFADSDA 297
Query 299 CVTPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEI 357
CVTPVLA+ E H+ R+T A G Q PAPRFSRT RPP A ++ +
Sbjct 298 CVTPVLAFGEVHTEPHITERNTFYDADGGLQPLPAPRFSRTRPDVPRPPAAPLADVEAV 356
>gi|226308378|ref|YP_002768338.1| alpha-methylacyl-CoA racemase [Rhodococcus erythropolis PR4]
gi|226187495|dbj|BAH35599.1| probable alpha-methylacyl-CoA racemase [Rhodococcus erythropolis
PR4]
Length=364
Score = 385 bits (989), Expect = 6e-105, Method: Compositional matrix adjust.
Identities = 199/354 (57%), Positives = 256/354 (73%), Gaps = 3/354 (0%)
Query 1 VTTG-GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKR 59
TTG GPLAG++V+EL GIGPGPHA +LADLGADVVRV+R G + P + RD RG+R
Sbjct 3 TTTGRGPLAGLRVVELAGIGPGPHAATLLADLGADVVRVQRAGRIPGPGQPRDQTQRGRR 62
Query 60 IVDLDVKTQP--QAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWG 117
++D+K +L L +ADVL++ FRPG ERLG+GPD NP L++ R+TGWG
Sbjct 63 FCEVDLKDPAGVDIVLGLIERADVLIEGFRPGVTERLGLGPDVALERNPALVYGRMTGWG 122
Query 118 QDGPLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYER 177
Q+GPL+ AGHDINY+S TG L A G A P+PPLN+V DFGGGSM +L GI+ AL+ER
Sbjct 123 QEGPLSQAAGHDINYISLTGVLHAIGRAGERPVPPLNMVGDFGGGSMFLLFGILAALFER 182
Query 178 ERSGVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYM 237
++SG GQVVDAAMVDG L+ MMW+ +G+G D+R +LD GAP+Y YETSDG+YM
Sbjct 183 QKSGQGQVVDAAMVDGTLALSHMMWSFRGLGRWSDERGVNMLDTGAPYYDTYETSDGRYM 242
Query 238 AVGAIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTD 297
AVGA+EPQF+A LL+GLGL A +P+Q D + +PQ +FA+ FAS+TRDEW +F GTD
Sbjct 243 AVGAVEPQFYALLLAGLGLDPATLPSQNDKSAWPQTKKVFADVFASKTRDEWAAIFDGTD 302
Query 298 ACVTPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAA 351
AC TPVLA++EA++N H+ R +++ GV Q PAPRFSR+ G P A A
Sbjct 303 ACTTPVLAFAEASSNPHVAQRGSLVELDGVTQHRPAPRFSRSDPGLPSAPAAEA 356
>gi|312141267|ref|YP_004008603.1| alpha-methylacyl-CoA racemase [Rhodococcus equi 103S]
gi|311890606|emb|CBH49924.1| putative alpha-methylacyl-CoA racemase [Rhodococcus equi 103S]
Length=366
Score = 384 bits (987), Expect = 9e-105, Method: Compositional matrix adjust.
Identities = 192/355 (55%), Positives = 250/355 (71%), Gaps = 2/355 (0%)
Query 5 GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIVDLD 64
GPL G++V+E GIGPGPHA +LADLGADVVRV+R G L + D R +R+V+ D
Sbjct 10 GPLTGIRVVEFAGIGPGPHAATLLADLGADVVRVQRAGMLPAEGQVGDQTARNRRVVEAD 69
Query 65 VKT--QPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPL 122
+K + ++EL +AD+L++ FRPG ER+G+GPD PRL++ R+TGWGQDGPL
Sbjct 70 LKNPADVEKVVELLGRADILIEGFRPGVMERMGLGPDVVLERCPRLVYGRMTGWGQDGPL 129
Query 123 ASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGV 182
A +AGHD+NY+S TG L A G P+PPLN+V DFGGGSM +L G++ AL ER+ SG
Sbjct 130 AQSAGHDLNYISLTGVLHAVGRKGERPVPPLNMVGDFGGGSMFLLFGLLAALVERQTSGK 189
Query 183 GQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAI 242
GQV+DAAMVDG L+ ++W + IG D+R LDGGAP+Y YETSDGKYMAVGAI
Sbjct 190 GQVIDAAMVDGTLALSHIIWNFRRIGMWSDERGVNFLDGGAPYYDTYETSDGKYMAVGAI 249
Query 243 EPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTP 302
EPQF+A LL GL L A +P Q D + +P++ I ++F S+TRDEWT++F GTDAC TP
Sbjct 250 EPQFYAELLKGLELDPATLPGQQDASRWPELRQILTDKFLSKTRDEWTKIFDGTDACTTP 309
Query 303 VLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEI 357
VL ++EA N+ H+ AR ++I GV Q APAPRFSRTP +PP AT +D +
Sbjct 310 VLTFTEAPNDPHIAARGSIIELEGVTQHAPAPRFSRTPTTAPQPPARVATDVDTL 364
>gi|145222714|ref|YP_001133392.1| L-carnitine dehydratase/bile acid-inducible protein F [Mycobacterium
gilvum PYR-GCK]
gi|315443179|ref|YP_004076058.1| acyl-CoA transferase/carnitine dehydratase [Mycobacterium sp.
Spyr1]
gi|145215200|gb|ABP44604.1| L-carnitine dehydratase/bile acid-inducible protein F [Mycobacterium
gilvum PYR-GCK]
gi|315261482|gb|ADT98223.1| predicted acyl-CoA transferase/carnitine dehydratase [Mycobacterium
sp. Spyr1]
Length=364
Score = 380 bits (977), Expect = 2e-103, Method: Compositional matrix adjust.
Identities = 189/347 (55%), Positives = 245/347 (71%), Gaps = 5/347 (1%)
Query 5 GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSED--RDLLHRGKRIVD 62
GPL G++V+EL GIGPGPHA M+ DLGADVVR+ RPG P+ D L R +R V
Sbjct 3 GPLQGLRVVELAGIGPGPHAAMIFGDLGADVVRIERPGKGPGPATKPGGDYLLRNRRSVA 62
Query 63 LDVKTQP--QAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDG 120
++K+ + +L L AKADVL++ FRPG ERLG+GP+DCA VN +L++AR+TGWGQDG
Sbjct 63 ANLKSDEDREMVLRLIAKADVLIEGFRPGVTERLGLGPEDCAKVNEKLVYARMTGWGQDG 122
Query 121 PLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERS 180
P A AGHDINY+S G L A G P+PPLNL DFGGGSM +L+G++ AL+ERERS
Sbjct 123 PRAQQAGHDINYISLNGVLHAIGRHGERPVPPLNLAGDFGGGSMFLLVGVLAALWERERS 182
Query 181 GVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVG 240
G GQVVDAAMVDG SVL+ MMW+ +G+G D+R +LD GAP+Y YE SDG+++AVG
Sbjct 183 GKGQVVDAAMVDGSSVLSMMMWSFRGMGMWSDERGVNMLDTGAPYYDTYECSDGRHIAVG 242
Query 241 AIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACV 300
IEPQF+A L G+GL AD+P Q D+ +P++ + F++ A+ RD W VFAGTDACV
Sbjct 243 CIEPQFYAEFLKGVGLEGADLPGQNDMGRWPELREAFSKAIAAHDRDHWAGVFAGTDACV 302
Query 301 TPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRT-PAGPVRP 346
TPVL+++E + H R T + +G APAPRFSR+ P+ P P
Sbjct 303 TPVLSFAEVESEPHNTERDTFYSENGSLYPAPAPRFSRSVPSAPKAP 349
>gi|325673900|ref|ZP_08153590.1| fatty acid-CoA racemase [Rhodococcus equi ATCC 33707]
gi|325555165|gb|EGD24837.1| fatty acid-CoA racemase [Rhodococcus equi ATCC 33707]
Length=355
Score = 379 bits (974), Expect = 4e-103, Method: Compositional matrix adjust.
Identities = 189/353 (54%), Positives = 248/353 (71%), Gaps = 2/353 (0%)
Query 7 LAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIVDLDVK 66
+ G++V+E GIGPGPHA +LADLGADVVRV+R G L + D R +R+V+ D+K
Sbjct 1 MTGIRVVEFAGIGPGPHAATLLADLGADVVRVQRAGMLPAEGQVGDQTARNRRVVEADLK 60
Query 67 T--QPQAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGPLAS 124
+ ++EL +AD+L++ FRPG ER+G+GPD PRL++ R+TGWGQDGPLA
Sbjct 61 NPADVEKVVELLGRADILIEGFRPGVMERMGLGPDVVLERCPRLVYGRMTGWGQDGPLAQ 120
Query 125 TAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSGVGQ 184
+AGHD+NY+S TG L A G P+PPLN+V DFGGGSM +L G++ AL ER+ SG GQ
Sbjct 121 SAGHDLNYISLTGVLHAVGRKGERPVPPLNMVGDFGGGSMFLLFGLLAALVERQTSGKGQ 180
Query 185 VVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGAIEP 244
V+DAAMVDG L+ ++W + IG D+R LDGGAP+Y YETSDGKYMAVGAIEP
Sbjct 181 VIDAAMVDGTLALSHIIWNFRRIGMWSDERGVNFLDGGAPYYDTYETSDGKYMAVGAIEP 240
Query 245 QFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTPVL 304
QF+A LL GL L A +P Q D + +P++ I ++F S+TRDEWT++F GTDAC TPVL
Sbjct 241 QFYAELLKGLELDPATLPGQQDASRWPELRQILTDKFLSKTRDEWTKIFDGTDACTTPVL 300
Query 305 AWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEI 357
++EA N+ H+ AR ++I GV Q APAPRFSRTP +PP AT +D +
Sbjct 301 TFTEAPNDPHIAARGSIIELEGVTQHAPAPRFSRTPTTAPQPPARVATDVDTL 353
>gi|226361774|ref|YP_002779552.1| alpha-methylacyl-CoA racemase [Rhodococcus opacus B4]
gi|226240259|dbj|BAH50607.1| alpha-methylacyl-CoA racemase [Rhodococcus opacus B4]
Length=365
Score = 379 bits (972), Expect = 5e-103, Method: Compositional matrix adjust.
Identities = 200/359 (56%), Positives = 239/359 (67%), Gaps = 4/359 (1%)
Query 5 GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTMPSE--DRDLLHRGKRIVD 62
GPL G++V+EL GIGPGPHA M+LADLGA+VVRV R P D D RG+ IV+
Sbjct 3 GPLNGLRVVELAGIGPGPHACMLLADLGAEVVRVERRTHTDAPGTTIDADATLRGRHIVE 62
Query 63 LDVKTQPQA--MLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDG 120
D+K +LEL ADVL++ FRPG ERLG+GPDDC +VNPRLI+ R+TGWGQ G
Sbjct 63 ADLKNTADRDRILELIEHADVLVEGFRPGVTERLGLGPDDCQAVNPRLIYGRMTGWGQSG 122
Query 121 PLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERS 180
P A AGHDINY+S TG L G A P+PPLNLV DFGGGSM +++GI+ AL+ RE S
Sbjct 123 PFADRAGHDINYISLTGILDNIGRAGDRPVPPLNLVGDFGGGSMFLVVGILAALFARESS 182
Query 181 GVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVG 240
G GQVVDAAMVDG SVLAQMMW+++ + R LLDG PFY YE +DGK++AVG
Sbjct 183 GRGQVVDAAMVDGASVLAQMMWSLRSNRTWATGRGENLLDGSHPFYDTYECADGKHVAVG 242
Query 241 AIEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACV 300
AIEPQF+A LL GL L A +P Q + G+ + F F SRTRDEW +VFA TDACV
Sbjct 243 AIEPQFYAQLLDGLQLDATRLPGQWNRQGWAHLRAEFEIAFKSRTRDEWAQVFATTDACV 302
Query 301 TPVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSRTPAGPVRPPPAAATPIDEINW 359
TPVL + EA + H+ AR T T GV Q APAPRFS TP P + P W
Sbjct 303 TPVLTYDEALQHPHMAARGTFATVAGVDQPAPAPRFSDTPTTTPSQPRSLGLPEQIRQW 361
>gi|108801033|ref|YP_641230.1| L-carnitine dehydratase/bile acid-inducible protein F [Mycobacterium
sp. MCS]
gi|119870174|ref|YP_940126.1| L-carnitine dehydratase/bile acid-inducible protein F [Mycobacterium
sp. KMS]
gi|126436869|ref|YP_001072560.1| L-carnitine dehydratase/bile acid-inducible protein F [Mycobacterium
sp. JLS]
gi|108771452|gb|ABG10174.1| L-carnitine dehydratase/bile acid-inducible protein F [Mycobacterium
sp. MCS]
gi|119696263|gb|ABL93336.1| L-carnitine dehydratase/bile acid-inducible protein F [Mycobacterium
sp. KMS]
gi|126236669|gb|ABO00070.1| L-carnitine dehydratase/bile acid-inducible protein F [Mycobacterium
sp. JLS]
Length=363
Score = 378 bits (971), Expect = 6e-103, Method: Compositional matrix adjust.
Identities = 190/337 (57%), Positives = 237/337 (71%), Gaps = 3/337 (0%)
Query 5 GPLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPG-GLTMPSEDRDLLHRGKRIVDL 63
GPL G++V+EL GIGPGPHA M+L DLGADVVR+ RPG G +P++ D L R +R V
Sbjct 3 GPLQGLRVVELAGIGPGPHAAMILGDLGADVVRIERPGKGPGIPTKGSDQLLRNRRSVGA 62
Query 64 DVKTQP--QAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARITGWGQDGP 121
++KT + +L L AKADVL++ FRPG ERLG+GP+DCA VN RLI+ R+TGWGQ GP
Sbjct 63 NLKTDEGRELVLRLIAKADVLIEGFRPGVTERLGLGPEDCAKVNERLIYGRMTGWGQTGP 122
Query 122 LASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVALYERERSG 181
+ AGHDINY+S G L A G A P+PPLNL DFGGGSM +L+GI+ AL+ERERSG
Sbjct 123 RSQQAGHDINYISLNGVLHAVGRAGERPVPPLNLAGDFGGGSMFLLVGILAALWERERSG 182
Query 182 VGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYETSDGKYMAVGA 241
GQVVDAAMVDG SVLAQMMW + +G D+R +LD GAP+Y YETSDG+Y+AVGA
Sbjct 183 KGQVVDAAMVDGSSVLAQMMWAFRAMGMWSDERGVNMLDTGAPYYDTYETSDGRYVAVGA 242
Query 242 IEPQFFAALLSGLGLSAADVPTQLDVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVT 301
IEPQF+A +L LGL A +P Q D++ +P++ + + FA RD W +VF G+DACVT
Sbjct 243 IEPQFYAEMLDKLGLDPAGLPDQNDMSRWPELRAVLTKAFAEHDRDHWAKVFTGSDACVT 302
Query 302 PVLAWSEAANNDHLKARSTVITAHGVQQAAPAPRFSR 338
PVL++ E H R T APAPRFSR
Sbjct 303 PVLSFGEVEAEPHNTERDTFYREGDFLFPAPAPRFSR 339
Lambda K H
0.320 0.138 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 669804029900
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40