BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0871
Length=135
Score E
Sequences producing significant alignments: (Bits) Value
gi|148822079|ref|YP_001286833.1| cold shock protein B cspB [Myco... 270 5e-71
gi|15608011|ref|NP_215386.1| cold shock-like protein B CspB [Myc... 269 1e-70
gi|254363803|ref|ZP_04979849.1| cold shock-like protein B cspB [... 266 1e-69
gi|289446436|ref|ZP_06436180.1| cold shock protein B cspB [Mycob... 265 2e-69
gi|340625885|ref|YP_004744337.1| putative cold shock-like protei... 265 2e-69
gi|289749391|ref|ZP_06508769.1| LOW QUALITY PROTEIN: cold shock ... 260 5e-68
gi|41406908|ref|NP_959744.1| CspB [Mycobacterium avium subsp. pa... 244 3e-63
gi|118466199|ref|YP_880259.1| cold shock DNA-binding domain-cont... 243 5e-63
gi|342860484|ref|ZP_08717135.1| CspB [Mycobacterium colombiense ... 243 8e-63
gi|254823203|ref|ZP_05228204.1| CspB [Mycobacterium intracellula... 242 1e-62
gi|240171972|ref|ZP_04750631.1| cold shock-like protein B CspB [... 239 9e-62
gi|183984628|ref|YP_001852919.1| cold shock-like protein B CspB ... 239 1e-61
gi|15828153|ref|NP_302416.1| cold shock protein [Mycobacterium l... 238 2e-61
gi|118616153|ref|YP_904485.1| cold shock-like protein B CspB [My... 238 3e-61
gi|296169637|ref|ZP_06851255.1| cold-shock domain family protein... 237 4e-61
gi|120405994|ref|YP_955823.1| cold-shock DNA-binding domain-cont... 233 7e-60
gi|118468185|ref|YP_889929.1| cold-shock DNA-binding domain-cont... 233 1e-59
gi|333989438|ref|YP_004522052.1| cold shock-like protein B CspB ... 226 7e-58
gi|145222299|ref|YP_001132977.1| cold-shock DNA-binding domain-c... 226 1e-57
gi|108801438|ref|YP_641635.1| cold-shock DNA-binding family prot... 220 7e-56
gi|119870591|ref|YP_940543.1| cold-shock DNA-binding family prot... 218 3e-55
gi|226364441|ref|YP_002782223.1| cold shock protein [Rhodococcus... 215 1e-54
gi|169627971|ref|YP_001701620.1| cold shock-like protein B CspB ... 215 2e-54
gi|111021931|ref|YP_704903.1| cold shock protein [Rhodococcus jo... 214 5e-54
gi|229488838|ref|ZP_04382704.1| cold-shock DNA-binding domain pr... 212 2e-53
gi|343928204|ref|ZP_08767659.1| putative cold shock protein [Gor... 211 2e-53
gi|226308122|ref|YP_002768082.1| cold shock protein [Rhodococcus... 210 7e-53
gi|262201217|ref|YP_003272425.1| cold-shock protein DNA-binding ... 206 1e-51
gi|325674581|ref|ZP_08154268.1| cold-shock domain family protein... 204 3e-51
gi|312138422|ref|YP_004005758.1| cold shock protein [Rhodococcus... 204 3e-51
gi|54022606|ref|YP_116848.1| putative cold shock protein [Nocard... 202 1e-50
gi|333918508|ref|YP_004492089.1| Cold shock protein [Amycolicico... 191 3e-47
gi|331699393|ref|YP_004335632.1| cold-shock DNA-binding domain-c... 190 5e-47
gi|302530552|ref|ZP_07282894.1| cold-shock DNA-binding domain-co... 187 5e-46
gi|257057363|ref|YP_003135195.1| cold-shock DNA-binding protein ... 185 2e-45
gi|296138557|ref|YP_003645800.1| cold-shock DNA-binding domain-c... 185 2e-45
gi|300790296|ref|YP_003770587.1| cold shock protein CspA [Amycol... 184 3e-45
gi|134097204|ref|YP_001102865.1| cold-shock DNA-binding domain-c... 183 6e-45
gi|256374634|ref|YP_003098294.1| cold-shock DNA-binding domain-c... 180 5e-44
gi|324997476|ref|ZP_08118588.1| cold-shock DNA-binding protein f... 179 1e-43
gi|326384174|ref|ZP_08205856.1| cold-shock protein DNA-binding p... 177 5e-43
gi|317509214|ref|ZP_07966835.1| cold-shock DNA-binding domain-co... 176 1e-42
gi|296395233|ref|YP_003660117.1| cold-shock DNA-binding domain-c... 176 1e-42
gi|312193994|ref|YP_004014055.1| cold-shock DNA-binding domain p... 171 2e-41
gi|319948064|ref|ZP_08022237.1| CspB [Dietzia cinnamea P4] >gi|3... 168 3e-40
gi|258654840|ref|YP_003203996.1| cold-shock DNA-binding domain-c... 167 7e-40
gi|86743101|ref|YP_483501.1| cold-shock DNA-binding protein fami... 161 2e-38
gi|111226076|ref|YP_716870.1| CspB [Frankia alni ACN14a] >gi|111... 161 4e-38
gi|336176279|ref|YP_004581654.1| cold-shock DNA-binding domain-c... 160 4e-38
gi|158312011|ref|YP_001504519.1| cold-shock DNA-binding domain-c... 160 6e-38
>gi|148822079|ref|YP_001286833.1| cold shock protein B cspB [Mycobacterium tuberculosis F11]
gi|253800107|ref|YP_003033108.1| cold shock protein B cspB [Mycobacterium tuberculosis KZN 1435]
gi|254231179|ref|ZP_04924506.1| cold shock-like protein B cspB [Mycobacterium tuberculosis C]
13 more sequence titles
Length=138
Score = 270 bits (690), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 135/135 (100%), Positives = 135/135 (100%), Gaps = 0/135 (0%)
Query 1 VPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 60
VPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL
Sbjct 4 VPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 63
Query 61 SLRLIEPPPSLSRPRREPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR 120
SLRLIEPPPSLSRPRREPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR
Sbjct 64 SLRLIEPPPSLSRPRREPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR 123
Query 121 RVAEVVRAVAREFES 135
RVAEVVRAVAREFES
Sbjct 124 RVAEVVRAVAREFES 138
>gi|15608011|ref|NP_215386.1| cold shock-like protein B CspB [Mycobacterium tuberculosis H37Rv]
gi|15840284|ref|NP_335321.1| cold-shock domain-contain protein [Mycobacterium tuberculosis
CDC1551]
gi|31792059|ref|NP_854552.1| cold shock-like protein B CspB [Mycobacterium bovis AF2122/97]
54 more sequence titles
Length=135
Score = 269 bits (687), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 134/135 (99%), Positives = 135/135 (100%), Gaps = 0/135 (0%)
Query 1 VPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 60
+PTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL
Sbjct 1 MPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 60
Query 61 SLRLIEPPPSLSRPRREPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR 120
SLRLIEPPPSLSRPRREPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR
Sbjct 61 SLRLIEPPPSLSRPRREPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR 120
Query 121 RVAEVVRAVAREFES 135
RVAEVVRAVAREFES
Sbjct 121 RVAEVVRAVAREFES 135
>gi|254363803|ref|ZP_04979849.1| cold shock-like protein B cspB [Mycobacterium tuberculosis str.
Haarlem]
gi|134149317|gb|EBA41362.1| cold shock-like protein B cspB [Mycobacterium tuberculosis str.
Haarlem]
Length=135
Score = 266 bits (679), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 133/135 (99%), Positives = 134/135 (99%), Gaps = 0/135 (0%)
Query 1 VPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 60
+PTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPT VEALKAGQRVEFGIASGRRGPQAL
Sbjct 1 MPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTFVEALKAGQRVEFGIASGRRGPQAL 60
Query 61 SLRLIEPPPSLSRPRREPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR 120
SLRLIEPPPSLSRPRREPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR
Sbjct 61 SLRLIEPPPSLSRPRREPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR 120
Query 121 RVAEVVRAVAREFES 135
RVAEVVRAVAREFES
Sbjct 121 RVAEVVRAVAREFES 135
>gi|289446436|ref|ZP_06436180.1| cold shock protein B cspB [Mycobacterium tuberculosis CPHL_A]
gi|289419394|gb|EFD16595.1| cold shock protein B cspB [Mycobacterium tuberculosis CPHL_A]
Length=135
Score = 265 bits (677), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 132/135 (98%), Positives = 133/135 (99%), Gaps = 0/135 (0%)
Query 1 VPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 60
+PTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL
Sbjct 1 MPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 60
Query 61 SLRLIEPPPSLSRPRREPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR 120
SLRLIEPPPSL RP REPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR
Sbjct 61 SLRLIEPPPSLYRPHREPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR 120
Query 121 RVAEVVRAVAREFES 135
RVAEVVRAVAREFES
Sbjct 121 RVAEVVRAVAREFES 135
>gi|340625885|ref|YP_004744337.1| putative cold shock-like protein B CSPB [Mycobacterium canettii
CIPT 140010059]
gi|340004075|emb|CCC43211.1| putative cold shock-like protein B CSPB [Mycobacterium canettii
CIPT 140010059]
Length=135
Score = 265 bits (676), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 131/135 (98%), Positives = 134/135 (99%), Gaps = 0/135 (0%)
Query 1 VPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 60
+PTGKVKWYDPDKGFGFLSQE GEDVYVRSSALPTGVEALKAGQRVEFG+ASGRRGPQAL
Sbjct 1 MPTGKVKWYDPDKGFGFLSQEDGEDVYVRSSALPTGVEALKAGQRVEFGVASGRRGPQAL 60
Query 61 SLRLIEPPPSLSRPRREPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR 120
SLRLIEPPPSLSRPRREPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR
Sbjct 61 SLRLIEPPPSLSRPRREPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR 120
Query 121 RVAEVVRAVAREFES 135
RVAEVVRAVAREFE+
Sbjct 121 RVAEVVRAVAREFEA 135
>gi|289749391|ref|ZP_06508769.1| LOW QUALITY PROTEIN: cold shock protein B cspB [Mycobacterium
tuberculosis T92]
gi|289689978|gb|EFD57407.1| LOW QUALITY PROTEIN: cold shock protein B cspB [Mycobacterium
tuberculosis T92]
Length=136
Score = 260 bits (665), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 130/132 (99%), Positives = 131/132 (99%), Gaps = 0/132 (0%)
Query 1 VPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 60
+PTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL
Sbjct 1 MPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 60
Query 61 SLRLIEPPPSLSRPRREPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR 120
SLRLIEPPPSLSRPRREPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR
Sbjct 61 SLRLIEPPPSLSRPRREPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR 120
Query 121 RVAEVVRAVARE 132
RVAEVVRA ARE
Sbjct 121 RVAEVVRAGARE 132
>gi|41406908|ref|NP_959744.1| CspB [Mycobacterium avium subsp. paratuberculosis K-10]
gi|41395258|gb|AAS03127.1| CspB [Mycobacterium avium subsp. paratuberculosis K-10]
Length=138
Score = 244 bits (623), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 121/135 (90%), Positives = 127/135 (95%), Gaps = 0/135 (0%)
Query 1 VPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 60
VPTGKVKWYD DKGFGFLSQE GEDVYVRSSALP GVE LKAGQRVEFGIASGRRGPQAL
Sbjct 4 VPTGKVKWYDADKGFGFLSQEDGEDVYVRSSALPAGVEGLKAGQRVEFGIASGRRGPQAL 63
Query 61 SLRLIEPPPSLSRPRREPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR 120
SL+LIEPPPSL++ RRE AEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR
Sbjct 64 SLKLIEPPPSLTKARREGPAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR 123
Query 121 RVAEVVRAVAREFES 135
RV+EVVRAVARE ++
Sbjct 124 RVSEVVRAVARELDA 138
>gi|118466199|ref|YP_880259.1| cold shock DNA-binding domain-containing protein [Mycobacterium
avium 104]
gi|254773885|ref|ZP_05215401.1| CspB [Mycobacterium avium subsp. avium ATCC 25291]
gi|118167486|gb|ABK68383.1| 'Cold-shock' DNA-binding domain [Mycobacterium avium 104]
gi|336461249|gb|EGO40124.1| cold shock protein [Mycobacterium avium subsp. paratuberculosis
S397]
Length=135
Score = 243 bits (621), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 120/135 (89%), Positives = 127/135 (95%), Gaps = 0/135 (0%)
Query 1 VPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 60
+PTGKVKWYD DKGFGFLSQE GEDVYVRSSALP GVE LKAGQRVEFGIASGRRGPQAL
Sbjct 1 MPTGKVKWYDADKGFGFLSQEDGEDVYVRSSALPAGVEGLKAGQRVEFGIASGRRGPQAL 60
Query 61 SLRLIEPPPSLSRPRREPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR 120
SL+LIEPPPSL++ RRE AEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR
Sbjct 61 SLKLIEPPPSLTKARREGPAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR 120
Query 121 RVAEVVRAVAREFES 135
RV+EVVRAVARE ++
Sbjct 121 RVSEVVRAVARELDA 135
>gi|342860484|ref|ZP_08717135.1| CspB [Mycobacterium colombiense CECT 3035]
gi|342132139|gb|EGT85380.1| CspB [Mycobacterium colombiense CECT 3035]
Length=135
Score = 243 bits (620), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 118/135 (88%), Positives = 127/135 (95%), Gaps = 0/135 (0%)
Query 1 VPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 60
+PTGKVKWYD DKGFGFLSQE GEDVYVRSSALP GVE LKAGQRVEFGIASGRRGPQAL
Sbjct 1 MPTGKVKWYDADKGFGFLSQEDGEDVYVRSSALPAGVEGLKAGQRVEFGIASGRRGPQAL 60
Query 61 SLRLIEPPPSLSRPRREPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR 120
SL+LIEPPPSL++ RRE AEHKH+PDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR
Sbjct 61 SLKLIEPPPSLTKTRREAPAEHKHNPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR 120
Query 121 RVAEVVRAVAREFES 135
RV+EVV+AVARE ++
Sbjct 121 RVSEVVKAVARELDA 135
>gi|254823203|ref|ZP_05228204.1| CspB [Mycobacterium intracellulare ATCC 13950]
Length=135
Score = 242 bits (617), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 117/135 (87%), Positives = 127/135 (95%), Gaps = 0/135 (0%)
Query 1 VPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 60
+PTGKVKWYD DKGFGFLSQE GEDVYVRSSALP GVE LKAGQRVEFGIASGRRGPQAL
Sbjct 1 MPTGKVKWYDADKGFGFLSQEDGEDVYVRSSALPAGVEGLKAGQRVEFGIASGRRGPQAL 60
Query 61 SLRLIEPPPSLSRPRREPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR 120
SL+LIEPPPSL++ RR+ AEHKH+PDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR
Sbjct 61 SLKLIEPPPSLTKARRDAPAEHKHNPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR 120
Query 121 RVAEVVRAVAREFES 135
RV+EVV+AVARE ++
Sbjct 121 RVSEVVKAVARELDA 135
>gi|240171972|ref|ZP_04750631.1| cold shock-like protein B CspB [Mycobacterium kansasii ATCC 12478]
Length=134
Score = 239 bits (610), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 119/135 (89%), Positives = 127/135 (95%), Gaps = 1/135 (0%)
Query 1 VPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 60
+PTGKVKWYD +KGFGFLSQE GEDVYVRSSALP GVE LKAGQRVEFGIASGRRGPQAL
Sbjct 1 MPTGKVKWYDSEKGFGFLSQEDGEDVYVRSSALPAGVEGLKAGQRVEFGIASGRRGPQAL 60
Query 61 SLRLIEPPPSLSRPRREPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR 120
SL+LI+PPPSLSR RRE A EHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR
Sbjct 61 SLKLIDPPPSLSRTRRE-AVEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR 119
Query 121 RVAEVVRAVAREFES 135
RV+EVV+AVARE ++
Sbjct 120 RVSEVVKAVARELDA 134
>gi|183984628|ref|YP_001852919.1| cold shock-like protein B CspB [Mycobacterium marinum M]
gi|183177954|gb|ACC43064.1| cold shock-like protein B CspB [Mycobacterium marinum M]
Length=134
Score = 239 bits (609), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 118/135 (88%), Positives = 127/135 (95%), Gaps = 1/135 (0%)
Query 1 VPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 60
+PTGKVKWYD DKGFGFLSQE GEDVYVRSSALP GVE LKAGQRVEFGIASGRRGPQAL
Sbjct 1 MPTGKVKWYDSDKGFGFLSQEEGEDVYVRSSALPAGVEGLKAGQRVEFGIASGRRGPQAL 60
Query 61 SLRLIEPPPSLSRPRREPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR 120
SL+L++PPPSL+R RRE A EHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR
Sbjct 61 SLKLLDPPPSLTRTRRE-AVEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR 119
Query 121 RVAEVVRAVAREFES 135
RV+EVV+AVARE ++
Sbjct 120 RVSEVVKAVARELDA 134
>gi|15828153|ref|NP_302416.1| cold shock protein [Mycobacterium leprae TN]
gi|221230630|ref|YP_002504046.1| putative cold shock protein [Mycobacterium leprae Br4923]
gi|2440094|emb|CAB16651.1| small cold-shock protein [Mycobacterium leprae]
gi|13093707|emb|CAC31102.1| probable cold shock protein [Mycobacterium leprae]
gi|219933737|emb|CAR72244.1| probable cold shock protein [Mycobacterium leprae Br4923]
Length=136
Score = 238 bits (607), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 117/136 (87%), Positives = 127/136 (94%), Gaps = 1/136 (0%)
Query 1 VPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 60
+PTGKVKWYD DKGFGFLSQE GEDVYVRSSALP GVE LKAGQRVEFG+ASGRRGPQAL
Sbjct 1 MPTGKVKWYDADKGFGFLSQEDGEDVYVRSSALPAGVEGLKAGQRVEFGVASGRRGPQAL 60
Query 61 SLRLIEPPPSLSRP-RREPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTA 119
SL+LI+PPPS +R RRE AEH+HSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTA
Sbjct 61 SLKLIDPPPSFARQVRREALAEHRHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTA 120
Query 120 RRVAEVVRAVAREFES 135
RRV+EVV+AVAREF++
Sbjct 121 RRVSEVVKAVAREFDA 136
>gi|118616153|ref|YP_904485.1| cold shock-like protein B CspB [Mycobacterium ulcerans Agy99]
gi|118568263|gb|ABL03014.1| cold shock-like protein B CspB [Mycobacterium ulcerans Agy99]
Length=184
Score = 238 bits (606), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 118/135 (88%), Positives = 126/135 (94%), Gaps = 1/135 (0%)
Query 1 VPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 60
VPTGKVKWYD DKGFGFLSQE GEDVYVRSSALP GVE LKAGQRVEFGIASGRRGPQAL
Sbjct 51 VPTGKVKWYDSDKGFGFLSQEEGEDVYVRSSALPAGVEGLKAGQRVEFGIASGRRGPQAL 110
Query 61 SLRLIEPPPSLSRPRREPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR 120
SL+L++PPPSL+R R E A EHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR
Sbjct 111 SLKLLDPPPSLTRTRHE-AVEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR 169
Query 121 RVAEVVRAVAREFES 135
RV+EVV+AVARE ++
Sbjct 170 RVSEVVKAVARELDA 184
>gi|296169637|ref|ZP_06851255.1| cold-shock domain family protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295895634|gb|EFG75330.1| cold-shock domain family protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=137
Score = 237 bits (605), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 119/137 (87%), Positives = 125/137 (92%), Gaps = 2/137 (1%)
Query 1 VPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 60
+PTGKVKWYD DKGFGFLSQE GEDVYVRSSALP GVE LKAGQRVEFGIASGRRGPQAL
Sbjct 1 MPTGKVKWYDADKGFGFLSQEDGEDVYVRSSALPAGVEGLKAGQRVEFGIASGRRGPQAL 60
Query 61 SLRLIEPPPSLSRP--RREPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKT 118
SL+LIEPPPSL++ RRE EHKHSPDELHGMVEDMITLLES VQPELRKGRYPDRKT
Sbjct 61 SLKLIEPPPSLTKAQGRREAPVEHKHSPDELHGMVEDMITLLESAVQPELRKGRYPDRKT 120
Query 119 ARRVAEVVRAVAREFES 135
ARRV+EVVRAVARE +S
Sbjct 121 ARRVSEVVRAVARELDS 137
>gi|120405994|ref|YP_955823.1| cold-shock DNA-binding domain-containing protein [Mycobacterium
vanbaalenii PYR-1]
gi|119958812|gb|ABM15817.1| cold-shock DNA-binding protein family [Mycobacterium vanbaalenii
PYR-1]
Length=136
Score = 233 bits (594), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 114/136 (84%), Positives = 126/136 (93%), Gaps = 1/136 (0%)
Query 1 VPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 60
+PTG+VKWYD +KGFGFLSQE GEDVYVRSSALP GVE LKAGQRVEFG+A+GRRGPQAL
Sbjct 1 MPTGRVKWYDAEKGFGFLSQEDGEDVYVRSSALPAGVEGLKAGQRVEFGVAAGRRGPQAL 60
Query 61 SLRLIEPPPSLSRPRREPAA-EHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTA 119
SL+LI+PPPSL+R RRE AA EHKHSPDELHGMVEDMITLLES VQPELRKGRYPDRK A
Sbjct 61 SLKLIDPPPSLTRTRREAAAVEHKHSPDELHGMVEDMITLLESAVQPELRKGRYPDRKVA 120
Query 120 RRVAEVVRAVAREFES 135
RRV+EVV+AVARE ++
Sbjct 121 RRVSEVVKAVARELDA 136
>gi|118468185|ref|YP_889929.1| cold-shock DNA-binding domain-containing protein [Mycobacterium
smegmatis str. MC2 155]
gi|118169472|gb|ABK70368.1| 'Cold-shock' DNA-binding domain protein [Mycobacterium smegmatis
str. MC2 155]
Length=149
Score = 233 bits (593), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 115/136 (85%), Positives = 125/136 (92%), Gaps = 1/136 (0%)
Query 1 VPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 60
VPTGKVKWYD +KGFGFLSQE GEDVYVRSSALP GVEALK+GQRVEFG+A+GRRGPQAL
Sbjct 14 VPTGKVKWYDAEKGFGFLSQEDGEDVYVRSSALPAGVEALKSGQRVEFGVAAGRRGPQAL 73
Query 61 SLRLIEPPPSLSRPRREPA-AEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTA 119
SL+LI+PPPSLSR RRE EHKH+PDELHGMVEDMITLLES VQPELRKGRYPDRK A
Sbjct 74 SLKLIDPPPSLSRARREAERPEHKHTPDELHGMVEDMITLLESAVQPELRKGRYPDRKVA 133
Query 120 RRVAEVVRAVAREFES 135
RRV+EVVRAVARE ++
Sbjct 134 RRVSEVVRAVARELDA 149
>gi|333989438|ref|YP_004522052.1| cold shock-like protein B CspB [Mycobacterium sp. JDM601]
gi|333485406|gb|AEF34798.1| cold shock-like protein B CspB [Mycobacterium sp. JDM601]
Length=136
Score = 226 bits (577), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 110/136 (81%), Positives = 125/136 (92%), Gaps = 1/136 (0%)
Query 1 VPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 60
+PTGKVKWYD KGFGFLSQE GEDVYVR+SALP GVE LKAGQRVEFG+A+GRRGPQAL
Sbjct 1 MPTGKVKWYDAAKGFGFLSQEEGEDVYVRASALPDGVEGLKAGQRVEFGVAAGRRGPQAL 60
Query 61 SLRLIEPPPSLSRPRREPA-AEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTA 119
++ LI+PPPSL+R RRE A AEHKHSPDELHGMVEDMITLLE TVQPELRKG+YPDRKTA
Sbjct 61 TVTLIDPPPSLTRNRREAAPAEHKHSPDELHGMVEDMITLLEGTVQPELRKGKYPDRKTA 120
Query 120 RRVAEVVRAVAREFES 135
R+++EVV+AVARE ++
Sbjct 121 RQISEVVKAVARELDA 136
>gi|145222299|ref|YP_001132977.1| cold-shock DNA-binding domain-containing protein [Mycobacterium
gilvum PYR-GCK]
gi|315442733|ref|YP_004075612.1| cold-shock DNA-binding protein family [Mycobacterium sp. Spyr1]
gi|145214785|gb|ABP44189.1| cold-shock DNA-binding protein family [Mycobacterium gilvum PYR-GCK]
gi|315261036|gb|ADT97777.1| cold-shock DNA-binding protein family [Mycobacterium sp. Spyr1]
Length=136
Score = 226 bits (575), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 109/136 (81%), Positives = 124/136 (92%), Gaps = 1/136 (0%)
Query 1 VPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 60
+PTG+VKWYD +KGFGFLSQE GEDVYVRSSALP GVE LKAGQRVEFG+A+GRRGPQAL
Sbjct 1 MPTGRVKWYDAEKGFGFLSQEEGEDVYVRSSALPAGVEGLKAGQRVEFGVAAGRRGPQAL 60
Query 61 SLRLIEPPPSLSRPRRE-PAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTA 119
++LI+PPPS+SR RRE AAEHKH+PDELHGMVEDMITLLE VQPELRKG+YPDRK A
Sbjct 61 QVKLIDPPPSVSRNRREAAAAEHKHTPDELHGMVEDMITLLEGAVQPELRKGKYPDRKVA 120
Query 120 RRVAEVVRAVAREFES 135
RRV+EVV+AVARE ++
Sbjct 121 RRVSEVVKAVARELDA 136
>gi|108801438|ref|YP_641635.1| cold-shock DNA-binding family protein [Mycobacterium sp. MCS]
gi|108771857|gb|ABG10579.1| cold-shock DNA-binding protein family [Mycobacterium sp. MCS]
Length=147
Score = 220 bits (560), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 106/136 (78%), Positives = 122/136 (90%), Gaps = 1/136 (0%)
Query 1 VPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 60
VPTG+VKWYD +KGFGFLSQE GEDVYVRSSALP GVE LKAGQRVEFG+A+GRRGPQAL
Sbjct 12 VPTGRVKWYDAEKGFGFLSQEDGEDVYVRSSALPAGVEGLKAGQRVEFGVAAGRRGPQAL 71
Query 61 SLRLIEPPPSLSRPRREPA-AEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTA 119
SL LI+PPPSLS+ RRE EHKH+PDELHGM+ D+ITLLES +QP+L+KGRYPDRK A
Sbjct 72 SLTLIDPPPSLSKTRREAERPEHKHTPDELHGMIGDLITLLESAIQPDLQKGRYPDRKVA 131
Query 120 RRVAEVVRAVAREFES 135
RRV+EVV+AVARE ++
Sbjct 132 RRVSEVVKAVARELDA 147
>gi|119870591|ref|YP_940543.1| cold-shock DNA-binding family protein [Mycobacterium sp. KMS]
gi|126437423|ref|YP_001073114.1| cold-shock DNA-binding family protein [Mycobacterium sp. JLS]
gi|119696680|gb|ABL93753.1| cold-shock DNA-binding protein family [Mycobacterium sp. KMS]
gi|126237223|gb|ABO00624.1| cold-shock DNA-binding protein family [Mycobacterium sp. JLS]
Length=136
Score = 218 bits (554), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 105/136 (78%), Positives = 122/136 (90%), Gaps = 1/136 (0%)
Query 1 VPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 60
+PTG+VKWYD +KGFGFLSQE GEDVYVRSSALP GVE LKAGQRVEFG+A+GRRGPQAL
Sbjct 1 MPTGRVKWYDAEKGFGFLSQEDGEDVYVRSSALPAGVEGLKAGQRVEFGVAAGRRGPQAL 60
Query 61 SLRLIEPPPSLSRPRREPA-AEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTA 119
SL LI+PPPSLS+ RRE EHKH+PDELHGM+ D+ITLLES +QP+L+KGRYPDRK A
Sbjct 61 SLTLIDPPPSLSKTRREAERPEHKHTPDELHGMIGDLITLLESAIQPDLQKGRYPDRKVA 120
Query 120 RRVAEVVRAVAREFES 135
RRV+EVV+AVARE ++
Sbjct 121 RRVSEVVKAVARELDA 136
>gi|226364441|ref|YP_002782223.1| cold shock protein [Rhodococcus opacus B4]
gi|226242930|dbj|BAH53278.1| cold shock protein [Rhodococcus opacus B4]
Length=139
Score = 215 bits (548), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 106/137 (78%), Positives = 125/137 (92%), Gaps = 3/137 (2%)
Query 1 VPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 60
VPTGKVKWYD +KGFGFLSQE GEDVYVRSSALP GVE LKAGQRVEFG+A+GRRGPQAL
Sbjct 4 VPTGKVKWYDVEKGFGFLSQEEGEDVYVRSSALPEGVEGLKAGQRVEFGMAAGRRGPQAL 63
Query 61 SLRLIEPPPSL--SRPRREPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKT 118
SL++++P PSL + R+EP+A+ KH+PDELHGMVEDMITLLE+ VQP+LRKG+YPDRKT
Sbjct 64 SLKVLDPAPSLRQNAARKEPSAK-KHTPDELHGMVEDMITLLEAKVQPDLRKGKYPDRKT 122
Query 119 ARRVAEVVRAVAREFES 135
A+R++EVVRAVARE +S
Sbjct 123 AQRISEVVRAVARELDS 139
>gi|169627971|ref|YP_001701620.1| cold shock-like protein B CspB [Mycobacterium abscessus ATCC
19977]
gi|169239938|emb|CAM60966.1| Probable cold shock-like protein B CspB [Mycobacterium abscessus]
Length=137
Score = 215 bits (548), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 103/137 (76%), Positives = 119/137 (87%), Gaps = 2/137 (1%)
Query 1 VPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 60
+PTGKVKWYD +KGFGFLSQE GEDVYVRSSALP GVE LKAGQ+VEFG+A+GRRGPQAL
Sbjct 1 MPTGKVKWYDAEKGFGFLSQEDGEDVYVRSSALPAGVEGLKAGQKVEFGMAAGRRGPQAL 60
Query 61 SLRLIEPPPSLSRPRREPAA--EHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKT 118
SL+LI+ PPS+ + RRE + HKH+ DELHGM+EDMITLLE TVQ ELRKGRYPDRK
Sbjct 61 SLKLIDAPPSVQKTRRESSGPVNHKHTTDELHGMIEDMITLLEGTVQTELRKGRYPDRKI 120
Query 119 ARRVAEVVRAVAREFES 135
AR+V+EVVRAVA E ++
Sbjct 121 ARKVSEVVRAVASELDA 137
>gi|111021931|ref|YP_704903.1| cold shock protein [Rhodococcus jostii RHA1]
gi|110821461|gb|ABG96745.1| probable cold shock protein [Rhodococcus jostii RHA1]
Length=136
Score = 214 bits (544), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 105/137 (77%), Positives = 125/137 (92%), Gaps = 3/137 (2%)
Query 1 VPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 60
+PTGKVKWYD +KGFGFLSQE GEDVYVRSSALP GVE LKAGQRVEFG+A+GRRGPQAL
Sbjct 1 MPTGKVKWYDVEKGFGFLSQEEGEDVYVRSSALPEGVEGLKAGQRVEFGMAAGRRGPQAL 60
Query 61 SLRLIEPPPSL--SRPRREPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKT 118
SL++++P PSL + R+EP+A+ KH+PDELHGMVEDMITLLE+ VQP+LRKG+YPDRKT
Sbjct 61 SLKVLDPAPSLRQNAARKEPSAK-KHTPDELHGMVEDMITLLEAKVQPDLRKGKYPDRKT 119
Query 119 ARRVAEVVRAVAREFES 135
A+R++EVVRAVARE +S
Sbjct 120 AQRISEVVRAVARELDS 136
>gi|229488838|ref|ZP_04382704.1| cold-shock DNA-binding domain protein [Rhodococcus erythropolis
SK121]
gi|229324342|gb|EEN90097.1| cold-shock DNA-binding domain protein [Rhodococcus erythropolis
SK121]
Length=140
Score = 212 bits (539), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 104/138 (76%), Positives = 122/138 (89%), Gaps = 4/138 (2%)
Query 1 VPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 60
VPTGKVKWYD +KGFGFLSQE GEDVYVR+SALP GVE LKAGQRVEFG+A+GRRGPQAL
Sbjct 4 VPTGKVKWYDVEKGFGFLSQEEGEDVYVRASALPEGVEGLKAGQRVEFGMAAGRRGPQAL 63
Query 61 SLRLIEPPPSL---SRPRREPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRK 117
SL+++EP PSL + RREP E KH+PD+LHGMVEDMITLLE+ VQP+LR G+YPDRK
Sbjct 64 SLKVLEPAPSLRGATATRREP-VERKHTPDQLHGMVEDMITLLEAKVQPDLRNGKYPDRK 122
Query 118 TARRVAEVVRAVAREFES 135
TA+R++EVVRAVARE ++
Sbjct 123 TAQRISEVVRAVARELDT 140
>gi|343928204|ref|ZP_08767659.1| putative cold shock protein [Gordonia alkanivorans NBRC 16433]
gi|343761902|dbj|GAA14585.1| putative cold shock protein [Gordonia alkanivorans NBRC 16433]
Length=137
Score = 211 bits (538), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 103/137 (76%), Positives = 121/137 (89%), Gaps = 2/137 (1%)
Query 1 VPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 60
+PTGKVKWYD DKGFGFL+QE GEDVYVRSSALP GVEALK GQRVEFG+A+GRRGPQAL
Sbjct 1 MPTGKVKWYDADKGFGFLAQESGEDVYVRSSALPEGVEALKPGQRVEFGMAAGRRGPQAL 60
Query 61 SLRLIEPPPSLSRPRREPAAE--HKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKT 118
S++++EP PS+S+ RE A + +H+PDELHGMV D+ITLLE VQP+LRKGRYPDRKT
Sbjct 61 SVKVLEPAPSVSKNVREAARKDTKRHTPDELHGMVADLITLLEGKVQPDLRKGRYPDRKT 120
Query 119 ARRVAEVVRAVAREFES 135
A+R++EVVRAVARE ES
Sbjct 121 AQRISEVVRAVARELES 137
>gi|226308122|ref|YP_002768082.1| cold shock protein [Rhodococcus erythropolis PR4]
gi|226187239|dbj|BAH35343.1| probable cold shock protein [Rhodococcus erythropolis PR4]
Length=137
Score = 210 bits (534), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 103/138 (75%), Positives = 122/138 (89%), Gaps = 4/138 (2%)
Query 1 VPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 60
+PTGKVKWYD +KGFGFLSQE GEDVYVR+SALP GVE LKAGQRVEFG+A+GRRGPQAL
Sbjct 1 MPTGKVKWYDVEKGFGFLSQEEGEDVYVRASALPEGVEGLKAGQRVEFGMAAGRRGPQAL 60
Query 61 SLRLIEPPPSL---SRPRREPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRK 117
SL+++EP PSL + RREP E KH+PD+LHGMVEDMITLLE+ VQP+LR G+YPDRK
Sbjct 61 SLKVLEPAPSLRGATATRREP-VERKHTPDQLHGMVEDMITLLEAKVQPDLRNGKYPDRK 119
Query 118 TARRVAEVVRAVAREFES 135
TA+R++EVVRAVARE ++
Sbjct 120 TAQRISEVVRAVARELDT 137
>gi|262201217|ref|YP_003272425.1| cold-shock protein DNA-binding protein [Gordonia bronchialis
DSM 43247]
gi|262084564|gb|ACY20532.1| Cold-shock protein DNA-binding protein [Gordonia bronchialis
DSM 43247]
Length=155
Score = 206 bits (523), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 100/136 (74%), Positives = 118/136 (87%), Gaps = 2/136 (1%)
Query 1 VPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 60
VPTGKVKWYD +KGFGFL+QE GEDVYVRSSALP GVE LK GQRVEFG+A+GRRGPQAL
Sbjct 19 VPTGKVKWYDAEKGFGFLAQEDGEDVYVRSSALPDGVEGLKPGQRVEFGMAAGRRGPQAL 78
Query 61 SLRLIEPPPSLSRPRREPAAEH--KHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKT 118
S+ ++EP PS+++ RE A + +HSPDELHGMV D+ITLLE VQP+LRKGRYPDRKT
Sbjct 79 SVTVLEPAPSVAKNTREAARKEVKRHSPDELHGMVADLITLLEGKVQPDLRKGRYPDRKT 138
Query 119 ARRVAEVVRAVAREFE 134
A+R++EVVRAVARE +
Sbjct 139 AQRISEVVRAVARELD 154
>gi|325674581|ref|ZP_08154268.1| cold-shock domain family protein [Rhodococcus equi ATCC 33707]
gi|325554167|gb|EGD23842.1| cold-shock domain family protein [Rhodococcus equi ATCC 33707]
Length=140
Score = 204 bits (519), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 99/137 (73%), Positives = 118/137 (87%), Gaps = 2/137 (1%)
Query 1 VPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 60
VPTGKVKWYD +KGFGFLSQE GEDVYVR+SALP V+ LKAGQRVEF +A+GRRGPQAL
Sbjct 4 VPTGKVKWYDVEKGFGFLSQEEGEDVYVRASALPGDVDGLKAGQRVEFDMAAGRRGPQAL 63
Query 61 SLRLIEPPPSLSRPR--REPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKT 118
++L+EP P+L + R+ A KHSPDELHGMVEDMITLLE+ +QP+LRKG+YPDRKT
Sbjct 64 KVQLLEPAPTLRQNSGARKDAVARKHSPDELHGMVEDMITLLEAKIQPDLRKGKYPDRKT 123
Query 119 ARRVAEVVRAVAREFES 135
A+R++EVVRAVARE +S
Sbjct 124 AQRISEVVRAVARELDS 140
>gi|312138422|ref|YP_004005758.1| cold shock protein [Rhodococcus equi 103S]
gi|311887761|emb|CBH47073.1| cold shock protein [Rhodococcus equi 103S]
Length=147
Score = 204 bits (519), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 99/137 (73%), Positives = 118/137 (87%), Gaps = 2/137 (1%)
Query 1 VPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 60
VPTGKVKWYD +KGFGFLSQE GEDVYVR+SALP V+ LKAGQRVEF +A+GRRGPQAL
Sbjct 11 VPTGKVKWYDVEKGFGFLSQEEGEDVYVRASALPGDVDGLKAGQRVEFDMAAGRRGPQAL 70
Query 61 SLRLIEPPPSLSRP--RREPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKT 118
++L+EP P+L + R+ A KHSPDELHGMVEDMITLLE+ +QP+LRKG+YPDRKT
Sbjct 71 KVQLLEPAPTLRQNGGARKDAVARKHSPDELHGMVEDMITLLEAKIQPDLRKGKYPDRKT 130
Query 119 ARRVAEVVRAVAREFES 135
A+R++EVVRAVARE +S
Sbjct 131 AQRISEVVRAVARELDS 147
>gi|54022606|ref|YP_116848.1| putative cold shock protein [Nocardia farcinica IFM 10152]
gi|54014114|dbj|BAD55484.1| putative cold shock protein [Nocardia farcinica IFM 10152]
Length=138
Score = 202 bits (514), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 103/138 (75%), Positives = 119/138 (87%), Gaps = 5/138 (3%)
Query 1 VPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 60
+PTG+VKWYD +KGFGFLSQ+ GEDVYVRSSALP GVE LK GQRVEFG+A+GRRGPQAL
Sbjct 1 MPTGRVKWYDVEKGFGFLSQDEGEDVYVRSSALPEGVEGLKPGQRVEFGMAAGRRGPQAL 60
Query 61 SLRLIEPPPSL----SRPRREPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDR 116
SL+LIE PPSL R R+EP+ + +PDELHGMVEDMITLLE+ VQP+LRKGRYPDR
Sbjct 61 SLKLIEAPPSLRQGQDRGRKEPSGP-RRTPDELHGMVEDMITLLETKVQPDLRKGRYPDR 119
Query 117 KTARRVAEVVRAVAREFE 134
KTAR ++EVVRAVARE +
Sbjct 120 KTARTISEVVRAVARELD 137
>gi|333918508|ref|YP_004492089.1| Cold shock protein [Amycolicicoccus subflavus DQS3-9A1]
gi|333480728|gb|AEF39288.1| Cold shock protein [Amycolicicoccus subflavus DQS3-9A1]
Length=153
Score = 191 bits (486), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 90/135 (67%), Positives = 116/135 (86%), Gaps = 0/135 (0%)
Query 1 VPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 60
VPTGKVKWYD +KGFGFLSQ+ GEDV+VRS+ALP+GVE+LK GQRVEFG+A GRRGPQAL
Sbjct 19 VPTGKVKWYDAEKGFGFLSQDDGEDVHVRSAALPSGVESLKPGQRVEFGMAVGRRGPQAL 78
Query 61 SLRLIEPPPSLSRPRREPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR 120
S+++++P PS+ + R+ A + SPDELH M+EDMI LLE++VQP L KGRYP+RK ++
Sbjct 79 SVKVLDPLPSIRQAARKEAPVKRRSPDELHSMIEDMIKLLEASVQPSLDKGRYPERKQSQ 138
Query 121 RVAEVVRAVAREFES 135
R+AEV+RAVARE ++
Sbjct 139 RLAEVIRAVARELDA 153
>gi|331699393|ref|YP_004335632.1| cold-shock DNA-binding domain-containing protein [Pseudonocardia
dioxanivorans CB1190]
gi|326954082|gb|AEA27779.1| cold-shock DNA-binding domain protein [Pseudonocardia dioxanivorans
CB1190]
Length=156
Score = 190 bits (483), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 92/135 (69%), Positives = 112/135 (83%), Gaps = 7/135 (5%)
Query 1 VPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 60
VPTG+VKWYD DKGFGFL+Q+GGEDVYVR SALPTGVE+LK+GQRVEFG+A GRRGPQAL
Sbjct 29 VPTGRVKWYDADKGFGFLAQDGGEDVYVRKSALPTGVESLKSGQRVEFGMAEGRRGPQAL 88
Query 61 SLRLIEPPPSLSRPRREPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR 120
+RL++ PPS+ R PA +ELHG++EDMI LLE+ VQP+LR+GRYP+RKTA+
Sbjct 89 QVRLVDAPPSVVEATRRPA-------EELHGLIEDMIKLLEAKVQPDLRRGRYPERKTAK 141
Query 121 RVAEVVRAVAREFES 135
AEVVRAVAR+ +
Sbjct 142 LAAEVVRAVARDLDG 156
>gi|302530552|ref|ZP_07282894.1| cold-shock DNA-binding domain-containing protein [Streptomyces
sp. AA4]
gi|302439447|gb|EFL11263.1| cold-shock DNA-binding domain-containing protein [Streptomyces
sp. AA4]
Length=139
Score = 187 bits (475), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 87/134 (65%), Positives = 111/134 (83%), Gaps = 7/134 (5%)
Query 1 VPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 60
VPTGKVKWYD +KGFGF++Q+GG DVY+R +ALP GVE LKAGQR+EFG+A GRRGPQAL
Sbjct 12 VPTGKVKWYDAEKGFGFVTQDGGADVYIRKAALPHGVEGLKAGQRLEFGVADGRRGPQAL 71
Query 61 SLRLIEPPPSLSRPRREPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR 120
S+RL++PPPS++ RR PA +ELHG+VEDMI LLE VQP+LR+ RYPDRK +
Sbjct 72 SVRLLDPPPSVAEARRRPA-------EELHGLVEDMIKLLELKVQPDLRRNRYPDRKNTK 124
Query 121 RVAEVVRAVAREFE 134
++AE++RAVAR+ +
Sbjct 125 QIAEIMRAVARDLD 138
>gi|257057363|ref|YP_003135195.1| cold-shock DNA-binding protein family [Saccharomonospora viridis
DSM 43017]
gi|256587235|gb|ACU98368.1| cold-shock DNA-binding protein family [Saccharomonospora viridis
DSM 43017]
Length=128
Score = 185 bits (469), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 89/134 (67%), Positives = 110/134 (83%), Gaps = 7/134 (5%)
Query 1 VPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 60
+PTGKVKWYD DKGFGF++++GG DVYVR SALP GVE LKAGQR+EFGIA GRRGPQAL
Sbjct 1 MPTGKVKWYDADKGFGFVTEDGGRDVYVRKSALPQGVETLKAGQRLEFGIAEGRRGPQAL 60
Query 61 SLRLIEPPPSLSRPRREPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR 120
S+RL++P PS++ RR PA +ELHG++EDMI LLE VQP LR+GRYP+RK +
Sbjct 61 SVRLLDPLPSVAEARRRPA-------EELHGLIEDMIKLLEMRVQPVLRRGRYPERKNTK 113
Query 121 RVAEVVRAVAREFE 134
R+AEV+RAVAR+ +
Sbjct 114 RIAEVMRAVARDLD 127
>gi|296138557|ref|YP_003645800.1| cold-shock DNA-binding domain-containing protein [Tsukamurella
paurometabola DSM 20162]
gi|296026691|gb|ADG77461.1| cold-shock DNA-binding domain protein [Tsukamurella paurometabola
DSM 20162]
Length=139
Score = 185 bits (469), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 90/140 (65%), Positives = 114/140 (82%), Gaps = 6/140 (4%)
Query 1 VPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 60
+PTGKVKWYD +KGFGFLSQEGGEDVYVRSSALP+G + LK GQRVEF +A+GRRGPQAL
Sbjct 1 MPTGKVKWYDAEKGFGFLSQEGGEDVYVRSSALPSGTDELKQGQRVEFSMAAGRRGPQAL 60
Query 61 SLRLIEPPPSLSRP-----RREPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPD 115
++ ++EP PS++R R PAA ++ DELHGM+EDMI LL+ +VQ ELRKGRYPD
Sbjct 61 TVTVLEPAPSVARGGAAQRTRRPAA-NRRPADELHGMIEDMIQLLDGSVQQELRKGRYPD 119
Query 116 RKTARRVAEVVRAVAREFES 135
RK + ++A+V+R +ARE +S
Sbjct 120 RKASEQIAKVLREIARELDS 139
>gi|300790296|ref|YP_003770587.1| cold shock protein CspA [Amycolatopsis mediterranei U32]
gi|299799810|gb|ADJ50185.1| cold shock protein CspA [Amycolatopsis mediterranei U32]
gi|340531977|gb|AEK47182.1| cold shock protein CspA [Amycolatopsis mediterranei S699]
Length=128
Score = 184 bits (467), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 85/134 (64%), Positives = 111/134 (83%), Gaps = 7/134 (5%)
Query 1 VPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 60
+PTGKVKWYD +KGFGF++Q+GG DVY+R +ALP GVE LKAGQR+EFG+A GRRGPQAL
Sbjct 1 MPTGKVKWYDAEKGFGFVTQDGGADVYIRKAALPQGVEGLKAGQRLEFGVADGRRGPQAL 60
Query 61 SLRLIEPPPSLSRPRREPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR 120
S+RL++PPPS++ RR PA +ELHG++EDMI LLE VQP+LR+ RYPDRK +
Sbjct 61 SVRLLDPPPSVAEARRRPA-------EELHGLIEDMIKLLELKVQPDLRRNRYPDRKHTK 113
Query 121 RVAEVVRAVAREFE 134
++AE++RAVAR+ +
Sbjct 114 QIAEIMRAVARDID 127
>gi|134097204|ref|YP_001102865.1| cold-shock DNA-binding domain-containing protein [Saccharopolyspora
erythraea NRRL 2338]
gi|291005339|ref|ZP_06563312.1| cold shock protein [Saccharopolyspora erythraea NRRL 2338]
gi|133909827|emb|CAL99939.1| cold-shock DNA-binding domain protein [Saccharopolyspora erythraea
NRRL 2338]
Length=130
Score = 183 bits (465), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 87/134 (65%), Positives = 111/134 (83%), Gaps = 7/134 (5%)
Query 1 VPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 60
+PTG+VKW+D +KGFGF++Q+GGEDVYVR+SALP+GVE+LK GQRV+F +A GRRGPQAL
Sbjct 1 MPTGRVKWFDAEKGFGFVTQDGGEDVYVRASALPSGVESLKTGQRVDFDMAQGRRGPQAL 60
Query 61 SLRLIEPPPSLSRPRREPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR 120
++L++PPPS+ RR PA DELHGMV+DMI LLE V P+LR+GRYPDRK ++
Sbjct 61 KVQLLDPPPSVVEARRRPA-------DELHGMVDDMIKLLELKVLPDLRRGRYPDRKVSK 113
Query 121 RVAEVVRAVAREFE 134
R+ EVVRAVARE +
Sbjct 114 RIGEVVRAVARELD 127
>gi|256374634|ref|YP_003098294.1| cold-shock DNA-binding domain-containing protein [Actinosynnema
mirum DSM 43827]
gi|255918937|gb|ACU34448.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM
43827]
Length=131
Score = 180 bits (457), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 86/134 (65%), Positives = 111/134 (83%), Gaps = 7/134 (5%)
Query 1 VPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 60
VPTGKVKWYD +KGFGF++Q+GGEDVYVR SALP GV+ALKAGQR+EFG+A GRRGPQAL
Sbjct 4 VPTGKVKWYDSEKGFGFVTQDGGEDVYVRKSALPEGVDALKAGQRIEFGMAEGRRGPQAL 63
Query 61 SLRLIEPPPSLSRPRREPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR 120
S+RL++P PS++ RR PA DEL+ ++ED+I LLE VQPELR+ RYP+RK+A+
Sbjct 64 SVRLVDPAPSVAEARRRPA-------DELNVVIEDLIRLLEQRVQPELRRSRYPERKSAK 116
Query 121 RVAEVVRAVAREFE 134
VA+ +RA+AR+ +
Sbjct 117 LVADALRAIARDLD 130
>gi|324997476|ref|ZP_08118588.1| cold-shock DNA-binding protein family [Pseudonocardia sp. P1]
Length=128
Score = 179 bits (454), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 86/134 (65%), Positives = 106/134 (80%), Gaps = 7/134 (5%)
Query 1 VPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 60
+PTG+VKWYD +KGFGFLSQ+GGEDVYVR +ALP+G EALK+GQRVEFG+A GRRGPQAL
Sbjct 1 MPTGRVKWYDAEKGFGFLSQDGGEDVYVRKAALPSGTEALKSGQRVEFGMAEGRRGPQAL 60
Query 61 SLRLIEPPPSLSRPRREPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR 120
S+R++E S R PA +ELHG++EDM+ LLE+ +QP LR GRYPDRKT +
Sbjct 61 SVRVVEKQASAVENTRRPA-------EELHGLIEDMMGLLENKIQPALRHGRYPDRKTCK 113
Query 121 RVAEVVRAVAREFE 134
AEVVRAVAR+ +
Sbjct 114 LAAEVVRAVARDLD 127
>gi|326384174|ref|ZP_08205856.1| cold-shock protein DNA-binding protein [Gordonia neofelifaecis
NRRL B-59395]
gi|326197039|gb|EGD54231.1| cold-shock protein DNA-binding protein [Gordonia neofelifaecis
NRRL B-59395]
Length=139
Score = 177 bits (448), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 86/138 (63%), Positives = 106/138 (77%), Gaps = 4/138 (2%)
Query 1 VPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 60
+PTG+VKWYD KGFGFLSQ GEDVYVR++ALP V LK GQ+VEF +A+GRRGPQAL
Sbjct 1 MPTGRVKWYDSAKGFGFLSQTDGEDVYVRANALPADVPELKVGQKVEFDMAAGRRGPQAL 60
Query 61 SLRLIEPPPSLSRPRREPAAEHKH----SPDELHGMVEDMITLLESTVQPELRKGRYPDR 116
+ ++EP PS+SR RE A + SPDELHG++ D+ITLLE VQP+LR GRYPDR
Sbjct 61 RVTVLEPAPSVSRNTREAARRERDAKRLSPDELHGLIADLITLLEGKVQPDLRNGRYPDR 120
Query 117 KTARRVAEVVRAVAREFE 134
KT +R++EVVR V RE +
Sbjct 121 KTEQRISEVVRGVTRELD 138
>gi|317509214|ref|ZP_07966835.1| cold-shock DNA-binding domain-containing protein [Segniliparus
rugosus ATCC BAA-974]
gi|316252424|gb|EFV11873.1| cold-shock DNA-binding domain-containing protein [Segniliparus
rugosus ATCC BAA-974]
Length=145
Score = 176 bits (445), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 87/140 (63%), Positives = 105/140 (75%), Gaps = 6/140 (4%)
Query 1 VPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 60
VPTGKVKWY DKGFGFL+QE G+DVYV SSALP G+E LK GQ VEFG+A GRRGPQAL
Sbjct 5 VPTGKVKWYSADKGFGFLTQEDGDDVYVGSSALPAGLEGLKPGQIVEFGMADGRRGPQAL 64
Query 61 SLRLIEPPP------SLSRPRREPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYP 114
S+R++ P R R KHSP+ELHGM+EDMI +LE+ VQP+LR+ ++P
Sbjct 65 SIRVLSTPSVAEEGRGRGRSERAERPTQKHSPEELHGMIEDMIKVLEAKVQPDLRRSKHP 124
Query 115 DRKTARRVAEVVRAVAREFE 134
DR T RR+AEV+RAVA+E E
Sbjct 125 DRATGRRIAEVLRAVAKELE 144
>gi|296395233|ref|YP_003660117.1| cold-shock DNA-binding domain-containing protein [Segniliparus
rotundus DSM 44985]
gi|296182380|gb|ADG99286.1| cold-shock DNA-binding domain protein [Segniliparus rotundus
DSM 44985]
Length=145
Score = 176 bits (445), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 90/140 (65%), Positives = 107/140 (77%), Gaps = 6/140 (4%)
Query 1 VPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 60
VPTGKVKWY DKGFGFL+QE G+DVYV SSALP GV+ LK GQ VEFG+A GRRGPQAL
Sbjct 5 VPTGKVKWYSADKGFGFLTQEDGDDVYVGSSALPAGVDELKPGQVVEFGMADGRRGPQAL 64
Query 61 SLRLIEPPPSLSRPR---REPAAEH---KHSPDELHGMVEDMITLLESTVQPELRKGRYP 114
S+R++ P + R R AE KHSP+ELHGM+EDMI +LE+ VQP+LR+G+ P
Sbjct 65 SIRVLSTPSVVEDGRGRGRSDRAERSLPKHSPEELHGMIEDMIKVLEAKVQPDLRRGKSP 124
Query 115 DRKTARRVAEVVRAVAREFE 134
DR RRVAEV+RAVA+E E
Sbjct 125 DRANGRRVAEVLRAVAKELE 144
>gi|312193994|ref|YP_004014055.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c]
gi|311225330|gb|ADP78185.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c]
Length=131
Score = 171 bits (434), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/135 (63%), Positives = 108/135 (80%), Gaps = 4/135 (2%)
Query 1 VPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 60
+PTGKVKWYD DKGFGFLS++ G DV+V +ALP GVE L+AG RVEFG+A+GR+G QAL
Sbjct 1 MPTGKVKWYDVDKGFGFLSRDDGGDVFVHKAALPAGVEKLRAGDRVEFGVAAGRKGDQAL 60
Query 61 SLRLIEPPPSLSRPRREPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR 120
SLR++ PPS+++ RE A + SPDELH MVEDMI +L+ VQ +LR+GRYPDR+ A+
Sbjct 61 SLRILAEPPSVAKAVREAA---RRSPDELHAMVEDMIKVLDD-VQRDLRRGRYPDRRIAQ 116
Query 121 RVAEVVRAVAREFES 135
RVA+VV AVA E E+
Sbjct 117 RVAKVVHAVASELEA 131
>gi|319948064|ref|ZP_08022237.1| CspB [Dietzia cinnamea P4]
gi|319438269|gb|EFV93216.1| CspB [Dietzia cinnamea P4]
Length=133
Score = 168 bits (425), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 86/135 (64%), Positives = 103/135 (77%), Gaps = 2/135 (1%)
Query 1 VPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 60
+P+GKVKWYD +KGFGFLSQEGGEDVYVR+ ALP GVE L+ QRVEF + SGRRGPQAL
Sbjct 1 MPSGKVKWYDAEKGFGFLSQEGGEDVYVRADALPAGVETLRPRQRVEFDMVSGRRGPQAL 60
Query 61 SLRLIEPPPSLSRPRREPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR 120
+ + + P + R P + SPDELHGMVEDMI +LESTVQPELR+G PD K +
Sbjct 61 RVVIHDEP--IVAEERAPRGGPRRSPDELHGMVEDMIKVLESTVQPELRRGHRPDHKISS 118
Query 121 RVAEVVRAVAREFES 135
RVA V+RAVARE ++
Sbjct 119 RVASVLRAVARELDA 133
>gi|258654840|ref|YP_003203996.1| cold-shock DNA-binding domain-containing protein [Nakamurella
multipartita DSM 44233]
gi|258558065|gb|ACV81007.1| cold-shock DNA-binding domain protein [Nakamurella multipartita
DSM 44233]
Length=129
Score = 167 bits (422), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 79/136 (59%), Positives = 106/136 (78%), Gaps = 8/136 (5%)
Query 1 VPTGKVKWYDPDKGFGFLSQEGG-EDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQA 59
+P+GK+KWYD DKGFGF++Q+GG +DV+VRSSALP GV LK GQ+VEFG+A GRRGPQA
Sbjct 1 MPSGKIKWYDADKGFGFIAQDGGGDDVHVRSSALPAGVATLKPGQKVEFGVADGRRGPQA 60
Query 60 LSLRLIEPPPSLSRPRREPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTA 119
L +++++ PPS+ R PA +ELHG+V+DMI LLES P+LR+GRYPDR
Sbjct 61 LQVKVLQAPPSVVAATRRPA-------EELHGLVDDMIKLLESKALPDLRRGRYPDRALG 113
Query 120 RRVAEVVRAVAREFES 135
R+A+V+RAVA +F++
Sbjct 114 GRIAQVLRAVANDFDA 129
>gi|86743101|ref|YP_483501.1| cold-shock DNA-binding protein family protein [Frankia sp. CcI3]
gi|86569963|gb|ABD13772.1| cold-shock DNA-binding protein family [Frankia sp. CcI3]
Length=131
Score = 161 bits (408), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 83/134 (62%), Positives = 105/134 (79%), Gaps = 4/134 (2%)
Query 1 VPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 60
+PTGKVKW+D DKGFGFLS++ G DV+V +ALP GV+ LK G RVEFG+A+GRRG QAL
Sbjct 1 MPTGKVKWFDVDKGFGFLSRDDGGDVFVHKAALPAGVDRLKPGDRVEFGVAAGRRGDQAL 60
Query 61 SLRLIEPPPSLSRPRREPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR 120
S+RL+ PPS++ + A + SPDELH MVEDMI +L+ VQ +LR+GRYPDR+TA+
Sbjct 61 SVRLLTAPPSVA---KAAAQAARRSPDELHSMVEDMIKVLDD-VQRDLRRGRYPDRRTAQ 116
Query 121 RVAEVVRAVAREFE 134
RVA+VV AVA E E
Sbjct 117 RVAKVVHAVANELE 130
>gi|111226076|ref|YP_716870.1| CspB [Frankia alni ACN14a]
gi|111153608|emb|CAJ65366.1| CspB [Frankia alni ACN14a]
Length=131
Score = 161 bits (407), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 83/135 (62%), Positives = 105/135 (78%), Gaps = 4/135 (2%)
Query 1 VPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 60
+PTGKVKW+D DKGFGFLS++ G DV+V +ALP GVE LK G RVEFG+A+GRRG QAL
Sbjct 1 MPTGKVKWFDVDKGFGFLSRDDGGDVFVHKAALPAGVERLKPGDRVEFGVAAGRRGDQAL 60
Query 61 SLRLIEPPPSLSRPRREPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR 120
S+RL+ PPS++ + A + SPDELH MVEDMI +L+ VQ +LR+GRYPDR+ A+
Sbjct 61 SVRLLAAPPSVA---KAAAHAARRSPDELHSMVEDMIKVLDD-VQRDLRRGRYPDRRIAQ 116
Query 121 RVAEVVRAVAREFES 135
RVA+VV AVA E E+
Sbjct 117 RVAKVVHAVANELEA 131
>gi|336176279|ref|YP_004581654.1| cold-shock DNA-binding domain-containing protein [Frankia symbiont
of Datisca glomerata]
gi|334857259|gb|AEH07733.1| cold-shock DNA-binding domain protein [Frankia symbiont of Datisca
glomerata]
Length=131
Score = 160 bits (406), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 82/134 (62%), Positives = 104/134 (78%), Gaps = 4/134 (2%)
Query 1 VPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL 60
+PTG+VKW+D DKGFGFLS++ G DV+V +ALP GV+ LK G RVEFGIA+ RRG QAL
Sbjct 1 MPTGRVKWFDVDKGFGFLSRDDGGDVFVHKAALPPGVDRLKPGDRVEFGIATSRRGDQAL 60
Query 61 SLRLIEPPPSLSRPRREPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR 120
S+RL+ PPS+++ + A + SPDELH MVEDMI LL+ VQ LR+GRYPDR+TA+
Sbjct 61 SVRLLAAPPSVTKAAAQAA---RRSPDELHSMVEDMIKLLDE-VQGSLRRGRYPDRRTAQ 116
Query 121 RVAEVVRAVAREFE 134
+VA+VV AVA E E
Sbjct 117 KVAKVVHAVADELE 130
>gi|158312011|ref|YP_001504519.1| cold-shock DNA-binding domain-containing protein [Frankia sp.
EAN1pec]
gi|158107416|gb|ABW09613.1| cold-shock DNA-binding domain protein [Frankia sp. EAN1pec]
Length=132
Score = 160 bits (405), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 80/135 (60%), Positives = 106/135 (79%), Gaps = 5/135 (3%)
Query 1 VPTGKVKWYDPDKGFGFLSQEGGE-DVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQA 59
+PTGKVKW+D D+GFGFLS++ G+ DV+V +ALP+GV+ LK G RVEFGIA+GR+G QA
Sbjct 1 MPTGKVKWFDVDRGFGFLSRDDGDADVFVHKAALPSGVDRLKPGDRVEFGIAAGRKGDQA 60
Query 60 LSLRLIEPPPSLSRPRREPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTA 119
LSLR++ PPS+++ A + SPDELH MVEDMI +L+ VQ +LR+GRYPDR+ A
Sbjct 61 LSLRILSAPPSVAKA---AANASRRSPDELHSMVEDMIKVLDD-VQRDLRRGRYPDRRAA 116
Query 120 RRVAEVVRAVAREFE 134
++VA+VV AVA E E
Sbjct 117 QKVAKVVHAVANELE 131
Lambda K H
0.315 0.134 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 129391415580
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40