BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0881 Length=288 Score E Sequences producing significant alignments: (Bits) Value gi|15608021|ref|NP_215396.1| rRNA methyltransferase [Mycobacteri... 573 8e-162 gi|31792069|ref|NP_854562.1| rRNA methyltransferase [Mycobacteri... 570 1e-160 gi|340625893|ref|YP_004744345.1| putative rRNA methyltransferase... 568 2e-160 gi|148822089|ref|YP_001286843.1| rRNA methyltransferase [Mycobac... 567 7e-160 gi|308370136|ref|ZP_07420416.2| rRNA methyltransferase [Mycobact... 503 1e-140 gi|15840295|ref|NP_335332.1| spoU rRNA methylase family protein ... 473 1e-131 gi|339293892|gb|AEJ46003.1| rRNA methyltransferase [Mycobacteriu... 462 2e-128 gi|308231660|ref|ZP_07413343.2| rRNA methyltransferase [Mycobact... 456 3e-126 gi|183984618|ref|YP_001852909.1| rRNA methyltransferase [Mycobac... 447 7e-124 gi|254823193|ref|ZP_05228194.1| hypothetical protein MintA_24909... 445 4e-123 gi|240171957|ref|ZP_04750616.1| rRNA methyltransferase [Mycobact... 445 4e-123 gi|118616143|ref|YP_904475.1| rRNA methyltransferase [Mycobacter... 438 5e-121 gi|118466066|ref|YP_880268.1| SpoU rRNA methylase [Mycobacterium... 422 3e-116 gi|41406918|ref|NP_959754.1| hypothetical protein MAP0820 [Mycob... 421 6e-116 gi|254773895|ref|ZP_05215411.1| SpoU rRNA methylase family prote... 421 8e-116 gi|342860493|ref|ZP_08717144.1| hypothetical protein MCOL_16501 ... 418 6e-115 gi|296169646|ref|ZP_06851264.1| SpoU rRNA methylase [Mycobacteri... 409 3e-112 gi|315442740|ref|YP_004075619.1| rRNA methylase [Mycobacterium s... 404 1e-110 gi|108801430|ref|YP_641627.1| tRNA/rRNA methyltransferase SpoU [... 403 2e-110 gi|333989447|ref|YP_004522061.1| rRNA methyltransferase [Mycobac... 402 2e-110 gi|120405985|ref|YP_955814.1| tRNA/rRNA methyltransferase SpoU [... 402 3e-110 gi|126437415|ref|YP_001073106.1| tRNA/rRNA methyltransferase Spo... 400 2e-109 gi|145222306|ref|YP_001132984.1| tRNA/rRNA methyltransferase Spo... 396 2e-108 gi|118469110|ref|YP_889920.1| 23s ribosomal RNA methyltransferas... 392 3e-107 gi|169627980|ref|YP_001701629.1| putative tRNA/rRNA methyltransf... 384 7e-105 gi|325674569|ref|ZP_08154256.1| SpoU rRNA methylase [Rhodococcus... 360 1e-97 gi|312138435|ref|YP_004005771.1| tRNA/rRNA methyltransferase [Rh... 359 2e-97 gi|111021948|ref|YP_704920.1| RNA methyltransferase [Rhodococcus... 357 8e-97 gi|226364458|ref|YP_002782240.1| RNA methyltransferase [Rhodococ... 357 9e-97 gi|54022618|ref|YP_116860.1| putative ribosomal RNA methyltransf... 355 4e-96 gi|326384165|ref|ZP_08205847.1| tRNA/rRNA methyltransferase SpoU... 351 8e-95 gi|226308108|ref|YP_002768068.1| RNA methyltransferase [Rhodococ... 350 1e-94 gi|229488371|ref|ZP_04382237.1| rRNA methyltransferase [Rhodococ... 348 5e-94 gi|343928228|ref|ZP_08767683.1| putative RNA methyltransferase [... 345 7e-93 gi|262201234|ref|YP_003272442.1| tRNA/rRNA methyltransferase Spo... 331 1e-88 gi|333918519|ref|YP_004492100.1| putative ribosomal RNA methyltr... 306 3e-81 gi|257057351|ref|YP_003135183.1| rRNA methylase [Saccharomonospo... 301 6e-80 gi|225023123|ref|ZP_03712315.1| hypothetical protein CORMATOL_03... 292 5e-77 gi|259507138|ref|ZP_05750038.1| SpoU rRNA methylase family prote... 290 1e-76 gi|25027456|ref|NP_737510.1| putative RNA methyltransferase [Cor... 290 2e-76 gi|344043565|gb|EGV39254.1| hypothetical protein CgS9114_13665 [... 290 2e-76 gi|305682031|ref|ZP_07404835.1| RNA methyltransferase, TrmH fami... 289 3e-76 gi|19552052|ref|NP_600054.1| rRNA methylase [Corynebacterium glu... 289 4e-76 gi|337290263|ref|YP_004629284.1| hypothetical protein CULC22_006... 288 7e-76 gi|227487737|ref|ZP_03918053.1| rRNA methylase [Corynebacterium ... 287 2e-75 gi|213966414|ref|ZP_03394592.1| 23s ribosomal rna methyltransfer... 286 2e-75 gi|237785055|ref|YP_002905760.1| putative rRNA methylase [Coryne... 285 4e-75 gi|134097236|ref|YP_001102897.1| putative tRNA/rRNA methyltransf... 285 8e-75 gi|291005305|ref|ZP_06563278.1| putative tRNA/rRNA methyltransfe... 285 8e-75 gi|300858020|ref|YP_003783003.1| hypothetical protein cpfrc_0060... 282 4e-74 >gi|15608021|ref|NP_215396.1| rRNA methyltransferase [Mycobacterium tuberculosis H37Rv] gi|148660658|ref|YP_001282181.1| putative rRNA methyltransferase [Mycobacterium tuberculosis H37Ra] gi|167968352|ref|ZP_02550629.1| putative rRNA methyltransferase [Mycobacterium tuberculosis H37Ra] gi|307083402|ref|ZP_07492515.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu012] gi|1731374|sp|Q10543.1|Y881_MYCTU RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Rv0881/MT0904 gi|1314020|emb|CAA97388.1| POSSIBLE RRNA METHYLTRANSFERASE (RRNA METHYLASE) [Mycobacterium tuberculosis H37Rv] gi|148504810|gb|ABQ72619.1| putative rRNA methyltransferase [Mycobacterium tuberculosis H37Ra] gi|308366818|gb|EFP55669.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu012] Length=288 Score = 573 bits (1478), Expect = 8e-162, Method: Compositional matrix adjust. Identities = 287/288 (99%), Positives = 288/288 (100%), Gaps = 0/288 (0%) Query 1 VTEGRCAQHPDGLDVQDVCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRML 60 +TEGRCAQHPDGLDVQDVCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRML Sbjct 1 MTEGRCAQHPDGLDVQDVCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRML 60 Query 61 ASRFTPLALFGTDRRLAELKDDLAGVGAPYYRASADVMARVIGFHLNRGVLAAAGRVPEP 120 ASRFTPLALFGTDRRLAELKDDLAGVGAPYYRASADVMARVIGFHLNRGVLAAAGRVPEP Sbjct 61 ASRFTPLALFGTDRRLAELKDDLAGVGAPYYRASADVMARVIGFHLNRGVLAAAGRVPEP 120 Query 121 SVAQVVAGARTVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGH 180 SVAQVVAGARTVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGH Sbjct 121 SVAQVVAGARTVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGH 180 Query 181 ALLVPYARAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPG 240 ALLVPYARAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPG Sbjct 181 ALLVPYARAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPG 240 Query 241 LTAAALRISDVRVRIPMSRGTDSLNVATAAALAFYERTRSGHHIGPGT 288 LTAAALRISDVRVRIPMSRGTDSLNVATAAALAFYERTRSGHHIGPGT Sbjct 241 LTAAALRISDVRVRIPMSRGTDSLNVATAAALAFYERTRSGHHIGPGT 288 >gi|31792069|ref|NP_854562.1| rRNA methyltransferase [Mycobacterium bovis AF2122/97] gi|121636804|ref|YP_977027.1| putative rRNA methyltransferase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224989275|ref|YP_002643962.1| putative rRNA methyltransferase [Mycobacterium bovis BCG str. Tokyo 172] 47 more sequence titles Length=288 Score = 570 bits (1469), Expect = 1e-160, Method: Compositional matrix adjust. Identities = 286/288 (99%), Positives = 287/288 (99%), Gaps = 0/288 (0%) Query 1 VTEGRCAQHPDGLDVQDVCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRML 60 +TEGRCAQHPDGLDVQDVCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRML Sbjct 1 MTEGRCAQHPDGLDVQDVCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRML 60 Query 61 ASRFTPLALFGTDRRLAELKDDLAGVGAPYYRASADVMARVIGFHLNRGVLAAAGRVPEP 120 ASRFTPLALFGTDRRLAELKDDLAGVGAPYYRASADVMARVIGFHLNRGVLAAA RVPEP Sbjct 61 ASRFTPLALFGTDRRLAELKDDLAGVGAPYYRASADVMARVIGFHLNRGVLAAARRVPEP 120 Query 121 SVAQVVAGARTVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGH 180 SVAQVVAGARTVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGH Sbjct 121 SVAQVVAGARTVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGH 180 Query 181 ALLVPYARAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPG 240 ALLVPYARAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPG Sbjct 181 ALLVPYARAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPG 240 Query 241 LTAAALRISDVRVRIPMSRGTDSLNVATAAALAFYERTRSGHHIGPGT 288 LTAAALRISDVRVRIPMSRGTDSLNVATAAALAFYERTRSGHHIGPGT Sbjct 241 LTAAALRISDVRVRIPMSRGTDSLNVATAAALAFYERTRSGHHIGPGT 288 >gi|340625893|ref|YP_004744345.1| putative rRNA methyltransferase [Mycobacterium canettii CIPT 140010059] gi|340004083|emb|CCC43220.1| putative rRNA methyltransferase (rRNA methylase) [Mycobacterium canettii CIPT 140010059] Length=288 Score = 568 bits (1465), Expect = 2e-160, Method: Compositional matrix adjust. Identities = 285/288 (99%), Positives = 287/288 (99%), Gaps = 0/288 (0%) Query 1 VTEGRCAQHPDGLDVQDVCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRML 60 +TEGRCAQHPDGLDVQDVCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRML Sbjct 1 MTEGRCAQHPDGLDVQDVCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRML 60 Query 61 ASRFTPLALFGTDRRLAELKDDLAGVGAPYYRASADVMARVIGFHLNRGVLAAAGRVPEP 120 ASRFTPLALFGTDRRLAELKDDLAGVGAPYYRASADVMARVIGFHLNRGVLAAA RVPEP Sbjct 61 ASRFTPLALFGTDRRLAELKDDLAGVGAPYYRASADVMARVIGFHLNRGVLAAARRVPEP 120 Query 121 SVAQVVAGARTVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGH 180 SVAQVVAGARTVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGH Sbjct 121 SVAQVVAGARTVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGH 180 Query 181 ALLVPYARAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPG 240 ALLVPYARAADWPTELMTLKESGFRLLA+TPHGNACKLPEAIAAVSHERIALLVGAEGPG Sbjct 181 ALLVPYARAADWPTELMTLKESGFRLLALTPHGNACKLPEAIAAVSHERIALLVGAEGPG 240 Query 241 LTAAALRISDVRVRIPMSRGTDSLNVATAAALAFYERTRSGHHIGPGT 288 LTAAALRISDVRVRIPMSRGTDSLNVATAAALAFYERTRSGHHIGPGT Sbjct 241 LTAAALRISDVRVRIPMSRGTDSLNVATAAALAFYERTRSGHHIGPGT 288 >gi|148822089|ref|YP_001286843.1| rRNA methyltransferase [Mycobacterium tuberculosis F11] gi|148720616|gb|ABR05241.1| hypothetical rRNA methyltransferase (rRNA methylase) [Mycobacterium tuberculosis F11] Length=288 Score = 567 bits (1461), Expect = 7e-160, Method: Compositional matrix adjust. Identities = 285/288 (99%), Positives = 286/288 (99%), Gaps = 0/288 (0%) Query 1 VTEGRCAQHPDGLDVQDVCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRML 60 +TEGRCAQHPDGLDVQDVCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRML Sbjct 1 MTEGRCAQHPDGLDVQDVCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRML 60 Query 61 ASRFTPLALFGTDRRLAELKDDLAGVGAPYYRASADVMARVIGFHLNRGVLAAAGRVPEP 120 ASRFTPLALFGTDRRLAELKDDLAGVGAPYYRASADVMARVIGFHLNRGVLAAA RVPEP Sbjct 61 ASRFTPLALFGTDRRLAELKDDLAGVGAPYYRASADVMARVIGFHLNRGVLAAARRVPEP 120 Query 121 SVAQVVAGARTVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGH 180 SVAQVVAGARTVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGH Sbjct 121 SVAQVVAGARTVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGH 180 Query 181 ALLVPYARAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPG 240 ALLVPYARAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPG Sbjct 181 ALLVPYARAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPG 240 Query 241 LTAAALRISDVRVRIPMSRGTDSLNVATAAALAFYERTRSGHHIGPGT 288 LTAAAL ISDVRVRIPMSRGTDSLNVATAAALAFYERTRSGHHIGPGT Sbjct 241 LTAAALWISDVRVRIPMSRGTDSLNVATAAALAFYERTRSGHHIGPGT 288 >gi|308370136|ref|ZP_07420416.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu002] gi|308370524|ref|ZP_07421873.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu003] gi|308371788|ref|ZP_07426239.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu004] 11 more sequence titles Length=257 Score = 503 bits (1296), Expect = 1e-140, Method: Compositional matrix adjust. Identities = 255/257 (99%), Positives = 256/257 (99%), Gaps = 0/257 (0%) Query 32 LNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPLALFGTDRRLAELKDDLAGVGAPYY 91 +NSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPLALFGTDRRLAELKDDLAGVGAPYY Sbjct 1 MNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPLALFGTDRRLAELKDDLAGVGAPYY 60 Query 92 RASADVMARVIGFHLNRGVLAAAGRVPEPSVAQVVAGARTVAVLEGVNDHENLGSIFRNA 151 RASADVMARVIGFHLNRGVLAAA RVPEPSVAQVVAGARTVAVLEGVNDHENLGSIFRNA Sbjct 61 RASADVMARVIGFHLNRGVLAAARRVPEPSVAQVVAGARTVAVLEGVNDHENLGSIFRNA 120 Query 152 AGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYARAADWPTELMTLKESGFRLLAMTP 211 AGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYARAADWPTELMTLKESGFRLLAMTP Sbjct 121 AGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYARAADWPTELMTLKESGFRLLAMTP 180 Query 212 HGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISDVRVRIPMSRGTDSLNVATAAA 271 HGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISDVRVRIPMSRGTDSLNVATAAA Sbjct 181 HGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISDVRVRIPMSRGTDSLNVATAAA 240 Query 272 LAFYERTRSGHHIGPGT 288 LAFYERTRSGHHIGPGT Sbjct 241 LAFYERTRSGHHIGPGT 257 >gi|15840295|ref|NP_335332.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis CDC1551] gi|13880456|gb|AAK45146.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis CDC1551] Length=242 Score = 473 bits (1218), Expect = 1e-131, Method: Compositional matrix adjust. Identities = 240/242 (99%), Positives = 241/242 (99%), Gaps = 0/242 (0%) Query 47 LVIAEGVLVVQRMLASRFTPLALFGTDRRLAELKDDLAGVGAPYYRASADVMARVIGFHL 106 +VIAEGVLVVQRMLASRFTPLALFGTDRRLAELKDDLAGVGAPYYRASADVMARVIGFHL Sbjct 1 MVIAEGVLVVQRMLASRFTPLALFGTDRRLAELKDDLAGVGAPYYRASADVMARVIGFHL 60 Query 107 NRGVLAAAGRVPEPSVAQVVAGARTVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCA 166 NRGVLAAA RVPEPSVAQVVAGARTVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCA Sbjct 61 NRGVLAAARRVPEPSVAQVVAGARTVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCA 120 Query 167 DPLYRRAVRVSMGHALLVPYARAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVS 226 DPLYRRAVRVSMGHALLVPYARAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVS Sbjct 121 DPLYRRAVRVSMGHALLVPYARAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVS 180 Query 227 HERIALLVGAEGPGLTAAALRISDVRVRIPMSRGTDSLNVATAAALAFYERTRSGHHIGP 286 HERIALLVGAEGPGLTAAALRISDVRVRIPMSRGTDSLNVATAAALAFYERTRSGHHIGP Sbjct 181 HERIALLVGAEGPGLTAAALRISDVRVRIPMSRGTDSLNVATAAALAFYERTRSGHHIGP 240 Query 287 GT 288 GT Sbjct 241 GT 242 >gi|339293892|gb|AEJ46003.1| rRNA methyltransferase [Mycobacterium tuberculosis CCDC5079] Length=236 Score = 462 bits (1190), Expect = 2e-128, Method: Compositional matrix adjust. Identities = 234/236 (99%), Positives = 235/236 (99%), Gaps = 0/236 (0%) Query 53 VLVVQRMLASRFTPLALFGTDRRLAELKDDLAGVGAPYYRASADVMARVIGFHLNRGVLA 112 +LVVQRMLASRFTPLALFGTDRRLAELKDDLAGVGAPYYRASADVMARVIGFHLNRGVLA Sbjct 1 MLVVQRMLASRFTPLALFGTDRRLAELKDDLAGVGAPYYRASADVMARVIGFHLNRGVLA 60 Query 113 AAGRVPEPSVAQVVAGARTVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRR 172 AA RVPEPSVAQVVAGARTVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRR Sbjct 61 AARRVPEPSVAQVVAGARTVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRR 120 Query 173 AVRVSMGHALLVPYARAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIAL 232 AVRVSMGHALLVPYARAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIAL Sbjct 121 AVRVSMGHALLVPYARAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIAL 180 Query 233 LVGAEGPGLTAAALRISDVRVRIPMSRGTDSLNVATAAALAFYERTRSGHHIGPGT 288 LVGAEGPGLTAAALRISDVRVRIPMSRGTDSLNVATAAALAFYERTRSGHHIGPGT Sbjct 181 LVGAEGPGLTAAALRISDVRVRIPMSRGTDSLNVATAAALAFYERTRSGHHIGPGT 236 >gi|308231660|ref|ZP_07413343.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu001] gi|308378747|ref|ZP_07483775.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu010] gi|308379893|ref|ZP_07488012.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu011] gi|308216360|gb|EFO75759.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu001] gi|308359254|gb|EFP48105.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu010] gi|308363164|gb|EFP52015.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu011] Length=230 Score = 456 bits (1172), Expect = 3e-126, Method: Compositional matrix adjust. Identities = 230/230 (100%), Positives = 230/230 (100%), Gaps = 0/230 (0%) Query 59 MLASRFTPLALFGTDRRLAELKDDLAGVGAPYYRASADVMARVIGFHLNRGVLAAAGRVP 118 MLASRFTPLALFGTDRRLAELKDDLAGVGAPYYRASADVMARVIGFHLNRGVLAAAGRVP Sbjct 1 MLASRFTPLALFGTDRRLAELKDDLAGVGAPYYRASADVMARVIGFHLNRGVLAAAGRVP 60 Query 119 EPSVAQVVAGARTVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSM 178 EPSVAQVVAGARTVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSM Sbjct 61 EPSVAQVVAGARTVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSM 120 Query 179 GHALLVPYARAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEG 238 GHALLVPYARAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEG Sbjct 121 GHALLVPYARAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEG 180 Query 239 PGLTAAALRISDVRVRIPMSRGTDSLNVATAAALAFYERTRSGHHIGPGT 288 PGLTAAALRISDVRVRIPMSRGTDSLNVATAAALAFYERTRSGHHIGPGT Sbjct 181 PGLTAAALRISDVRVRIPMSRGTDSLNVATAAALAFYERTRSGHHIGPGT 230 >gi|183984618|ref|YP_001852909.1| rRNA methyltransferase [Mycobacterium marinum M] gi|183177944|gb|ACC43054.1| rRNA methyltransferase [Mycobacterium marinum M] Length=279 Score = 447 bits (1151), Expect = 7e-124, Method: Compositional matrix adjust. Identities = 227/275 (83%), Positives = 243/275 (89%), Gaps = 0/275 (0%) Query 8 QHPDGLDVQDVCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPL 67 H +DV+DV DPDDP LDDFRDLNSIDRRPDLP+GK LVIAEGVLVVQRMLASRF+P Sbjct 5 SHVRDVDVRDVSDPDDPCLDDFRDLNSIDRRPDLPSGKGLVIAEGVLVVQRMLASRFSPR 64 Query 68 ALFGTDRRLAELKDDLAGVGAPYYRASADVMARVIGFHLNRGVLAAAGRVPEPSVAQVVA 127 AL GTDRRL ELKDDLAGVG PYYR S DVMA+V+GFHLNRGVLAAA RV EPSV QVV Sbjct 65 ALLGTDRRLLELKDDLAGVGVPYYRVSPDVMAQVVGFHLNRGVLAAASRVVEPSVGQVVD 124 Query 128 GARTVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYA 187 GART+AVLEGVNDHENLGSIFRNAAGL VDAV+FG+GCADPLYRRAVRVSMGHALLVPYA Sbjct 125 GARTIAVLEGVNDHENLGSIFRNAAGLGVDAVIFGSGCADPLYRRAVRVSMGHALLVPYA 184 Query 188 RAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALR 247 RA DWP EL+ LKE GFRLLA+TP G+A LPEA+ AV + +ALLVGAEGPGLTAAALR Sbjct 185 RATDWPAELVALKERGFRLLALTPKGDARALPEAMDAVGDQPVALLVGAEGPGLTAAALR 244 Query 248 ISDVRVRIPMSRGTDSLNVATAAALAFYERTRSGH 282 ISD+RVRIPMSRGTDSLNVATAAALAFYER R G Sbjct 245 ISDLRVRIPMSRGTDSLNVATAAALAFYERARLGQ 279 >gi|254823193|ref|ZP_05228194.1| hypothetical protein MintA_24909 [Mycobacterium intracellulare ATCC 13950] Length=281 Score = 445 bits (1144), Expect = 4e-123, Method: Compositional matrix adjust. Identities = 224/268 (84%), Positives = 240/268 (90%), Gaps = 0/268 (0%) Query 11 DGLDVQDVCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPLALF 70 D +VQDV DPDDPRLDDFRDLNS+DRRPDLP+GK LVIAEGVLVVQRMLASRF P AL Sbjct 4 DAGNVQDVEDPDDPRLDDFRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFHPHALL 63 Query 71 GTDRRLAELKDDLAGVGAPYYRASADVMARVIGFHLNRGVLAAAGRVPEPSVAQVVAGAR 130 GTDRRL ELKDDLAG P+YR SAD+MARV+GFHLNRGVLAAA RV EPSVA+V+AGAR Sbjct 64 GTDRRLTELKDDLAGSTVPFYRTSADIMARVVGFHLNRGVLAAARRVGEPSVAEVIAGAR 123 Query 131 TVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYARAA 190 TVAVLEGVNDHENLGSIFRNAAGL VDAVVFG+GCADPLYRRAVRVSMGHALLVPYARA Sbjct 124 TVAVLEGVNDHENLGSIFRNAAGLGVDAVVFGSGCADPLYRRAVRVSMGHALLVPYARAT 183 Query 191 DWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISD 250 WP ELMTLKE+GFRLLAMTPH +AC L EA+ A ER+A+LVGAEGPGLT A LR SD Sbjct 184 CWPAELMTLKENGFRLLAMTPHESACPLAEAMTAARGERVAVLVGAEGPGLTPATLRCSD 243 Query 251 VRVRIPMSRGTDSLNVATAAALAFYERT 278 VRVR+PMSRGTDSLNVATAAALAFYER+ Sbjct 244 VRVRVPMSRGTDSLNVATAAALAFYERS 271 >gi|240171957|ref|ZP_04750616.1| rRNA methyltransferase [Mycobacterium kansasii ATCC 12478] Length=275 Score = 445 bits (1144), Expect = 4e-123, Method: Compositional matrix adjust. Identities = 223/267 (84%), Positives = 244/267 (92%), Gaps = 0/267 (0%) Query 13 LDVQDVCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPLALFGT 72 +DVQD+ DPDDPRLDDFRDLNS+DRRPDLP+GK LVIAEGVLVVQRMLASRFTP A+ GT Sbjct 6 VDVQDISDPDDPRLDDFRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFTPRAMLGT 65 Query 73 DRRLAELKDDLAGVGAPYYRASADVMARVIGFHLNRGVLAAAGRVPEPSVAQVVAGARTV 132 DRRLAEL+DDL G APYYRASA+VMAR +GFHLNRGVLA+A R+PE +VAQVV GARTV Sbjct 66 DRRLAELRDDLTGSTAPYYRASAEVMARAVGFHLNRGVLASASRLPELTVAQVVDGARTV 125 Query 133 AVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYARAADW 192 VLEGVNDHENLGSIFRNAAGL VDAVVFG+GCADPLYRRAVRVSMGHALLVPYARAADW Sbjct 126 VVLEGVNDHENLGSIFRNAAGLGVDAVVFGSGCADPLYRRAVRVSMGHALLVPYARAADW 185 Query 193 PTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISDVR 252 P +L+ L++ GFRLLAMTPHG+A +L EA+ AV + IALLVGAEGPGLTAAALRISD+R Sbjct 186 PADLLMLQQLGFRLLAMTPHGDARELGEAMDAVREQPIALLVGAEGPGLTAAALRISDLR 245 Query 253 VRIPMSRGTDSLNVATAAALAFYERTR 279 VRIPMSRGTDSLNVATAAALAFYER R Sbjct 246 VRIPMSRGTDSLNVATAAALAFYERAR 272 >gi|118616143|ref|YP_904475.1| rRNA methyltransferase [Mycobacterium ulcerans Agy99] gi|118568253|gb|ABL03004.1| rRNA methyltransferase [Mycobacterium ulcerans Agy99] Length=268 Score = 438 bits (1126), Expect = 5e-121, Method: Compositional matrix adjust. Identities = 222/268 (83%), Positives = 239/268 (90%), Gaps = 0/268 (0%) Query 15 VQDVCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPLALFGTDR 74 ++DV DPDDP LDDFRDLNSIDRRPDLP+GK LVIAEGVLVVQRMLASRF+P AL GTDR Sbjct 1 MRDVSDPDDPCLDDFRDLNSIDRRPDLPSGKGLVIAEGVLVVQRMLASRFSPRALLGTDR 60 Query 75 RLAELKDDLAGVGAPYYRASADVMARVIGFHLNRGVLAAAGRVPEPSVAQVVAGARTVAV 134 RL ELK+DLAGVGAPYYR S DVMA+V+GFHLNRGVLAAA RV EPSV QVV GART+AV Sbjct 61 RLLELKEDLAGVGAPYYRVSPDVMAQVVGFHLNRGVLAAASRVVEPSVGQVVDGARTIAV 120 Query 135 LEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYARAADWPT 194 LEGVNDHENL SIFRNAAGL V AV+FG+GCADPLYRRAVRVSMGHALLVPYARA DWP Sbjct 121 LEGVNDHENLSSIFRNAAGLGVHAVIFGSGCADPLYRRAVRVSMGHALLVPYARATDWPA 180 Query 195 ELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISDVRVR 254 EL+ LKE GFRLLA+TP G+A LPEA+ AV + +ALLVGAEGPGLTAAALRISD+RVR Sbjct 181 ELVALKERGFRLLALTPKGDARALPEAMDAVGDQPVALLVGAEGPGLTAAALRISDLRVR 240 Query 255 IPMSRGTDSLNVATAAALAFYERTRSGH 282 IPMSRGTDSLNVATAAALAFYER R G Sbjct 241 IPMSRGTDSLNVATAAALAFYERARLGQ 268 >gi|118466066|ref|YP_880268.1| SpoU rRNA methylase [Mycobacterium avium 104] gi|118167353|gb|ABK68250.1| SpoU rRNA methylase family protein [Mycobacterium avium 104] Length=432 Score = 422 bits (1085), Expect = 3e-116, Method: Compositional matrix adjust. Identities = 210/251 (84%), Positives = 229/251 (92%), Gaps = 0/251 (0%) Query 29 FRDLNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPLALFGTDRRLAELKDDLAGVGA 88 FRDLNS+DRRPDLP+GK LVIAEGVLVVQRMLASRF P AL GT+RRLAEL+DDLAGV Sbjct 165 FRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFRPHALLGTERRLAELRDDLAGVPV 224 Query 89 PYYRASADVMARVIGFHLNRGVLAAAGRVPEPSVAQVVAGARTVAVLEGVNDHENLGSIF 148 PYYR SADVMARV+GFHLNRGVLAAA RVPEP VA+++AG+RTVAVLEGVNDHENLG+IF Sbjct 225 PYYRTSADVMARVVGFHLNRGVLAAARRVPEPGVAELLAGSRTVAVLEGVNDHENLGAIF 284 Query 149 RNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYARAADWPTELMTLKESGFRLLA 208 RNAAGL VDAV+FG+GCADPLYRRAVRVSMGHALLVPYARA DWP EL TLKE GFRLLA Sbjct 285 RNAAGLGVDAVIFGSGCADPLYRRAVRVSMGHALLVPYARATDWPAELKTLKEKGFRLLA 344 Query 209 MTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISDVRVRIPMSRGTDSLNVAT 268 MTP G+AC L EA+ A +R+A+LVGAEGPGLT AALR+SDVRVRIPMSRGTDSLNVAT Sbjct 345 MTPQGSACGLAEAMTAARGDRVAVLVGAEGPGLTPAALRLSDVRVRIPMSRGTDSLNVAT 404 Query 269 AAALAFYERTR 279 AAALAFYER+R Sbjct 405 AAALAFYERSR 415 >gi|41406918|ref|NP_959754.1| hypothetical protein MAP0820 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395268|gb|AAS03137.1| hypothetical protein MAP_0820 [Mycobacterium avium subsp. paratuberculosis K-10] gi|336461239|gb|EGO40114.1| rRNA methylase [Mycobacterium avium subsp. paratuberculosis S397] Length=289 Score = 421 bits (1082), Expect = 6e-116, Method: Compositional matrix adjust. Identities = 210/251 (84%), Positives = 230/251 (92%), Gaps = 0/251 (0%) Query 29 FRDLNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPLALFGTDRRLAELKDDLAGVGA 88 FRDLNS+DRRPDLP+GK LVIAEGVLVVQRMLASRF P AL GT+RRLAEL+DDLAGV Sbjct 22 FRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFRPHALLGTERRLAELRDDLAGVPV 81 Query 89 PYYRASADVMARVIGFHLNRGVLAAAGRVPEPSVAQVVAGARTVAVLEGVNDHENLGSIF 148 PYYR SADVMARV+GFHLNRGVLAAA RVPEP VA+++AG+RTVAVLEGVNDHENLG+IF Sbjct 82 PYYRTSADVMARVVGFHLNRGVLAAARRVPEPGVAELLAGSRTVAVLEGVNDHENLGAIF 141 Query 149 RNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYARAADWPTELMTLKESGFRLLA 208 RNAAGL VDAV+FG+GCADPLYRRAVRVSMGHALLVPYARA DWP EL TLKE+GFRLLA Sbjct 142 RNAAGLGVDAVIFGSGCADPLYRRAVRVSMGHALLVPYARATDWPAELKTLKENGFRLLA 201 Query 209 MTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISDVRVRIPMSRGTDSLNVAT 268 MTP G+AC L EA+ A +R+A+LVGAEGPGLT AALR+SDVRVRIPMSRGTDSLNVAT Sbjct 202 MTPQGSACGLAEAMTAARGDRVAVLVGAEGPGLTPAALRLSDVRVRIPMSRGTDSLNVAT 261 Query 269 AAALAFYERTR 279 AAALAFYER+R Sbjct 262 AAALAFYERSR 272 >gi|254773895|ref|ZP_05215411.1| SpoU rRNA methylase family protein [Mycobacterium avium subsp. avium ATCC 25291] Length=289 Score = 421 bits (1081), Expect = 8e-116, Method: Compositional matrix adjust. Identities = 210/251 (84%), Positives = 229/251 (92%), Gaps = 0/251 (0%) Query 29 FRDLNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPLALFGTDRRLAELKDDLAGVGA 88 FRDLNS+DRRPDLP+GK LVIAEGVLVVQRMLASRF P AL GT+RRLAEL+DDLAGV Sbjct 22 FRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFRPHALLGTERRLAELRDDLAGVPV 81 Query 89 PYYRASADVMARVIGFHLNRGVLAAAGRVPEPSVAQVVAGARTVAVLEGVNDHENLGSIF 148 PYYR SADVMARV+GFHLNRGVLAAA RVPEP VA+++AG+RTVAVLEGVNDHENLG+IF Sbjct 82 PYYRTSADVMARVVGFHLNRGVLAAARRVPEPGVAELLAGSRTVAVLEGVNDHENLGAIF 141 Query 149 RNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYARAADWPTELMTLKESGFRLLA 208 RNAAGL VDAV+FG+GCADPLYRRAVRVSMGHALLVPYARA DWP EL TLKE GFRLLA Sbjct 142 RNAAGLGVDAVIFGSGCADPLYRRAVRVSMGHALLVPYARATDWPAELKTLKEKGFRLLA 201 Query 209 MTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISDVRVRIPMSRGTDSLNVAT 268 MTP G+AC L EA+ A +R+A+LVGAEGPGLT AALR+SDVRVRIPMSRGTDSLNVAT Sbjct 202 MTPQGSACGLAEAMTAARGDRVAVLVGAEGPGLTPAALRLSDVRVRIPMSRGTDSLNVAT 261 Query 269 AAALAFYERTR 279 AAALAFYER+R Sbjct 262 AAALAFYERSR 272 >gi|342860493|ref|ZP_08717144.1| hypothetical protein MCOL_16501 [Mycobacterium colombiense CECT 3035] gi|342132148|gb|EGT85389.1| hypothetical protein MCOL_16501 [Mycobacterium colombiense CECT 3035] Length=285 Score = 418 bits (1074), Expect = 6e-115, Method: Compositional matrix adjust. Identities = 225/277 (82%), Positives = 244/277 (89%), Gaps = 0/277 (0%) Query 11 DGLDVQDVCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPLALF 70 + L+V+DV DPDDPRLDDFRDLNS+DRRPDLP+GK LVIAEGVLVVQRMLASRF P AL Sbjct 6 EALNVEDVDDPDDPRLDDFRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFRPHALL 65 Query 71 GTDRRLAELKDDLAGVGAPYYRASADVMARVIGFHLNRGVLAAAGRVPEPSVAQVVAGAR 130 GTDRRLAEL+ DLAG P+YRASADVMAR +GFHLNRGVLAAA RV EPSVA +AGAR Sbjct 66 GTDRRLAELEADLAGSAVPFYRASADVMARAVGFHLNRGVLAAARRVAEPSVADAIAGAR 125 Query 131 TVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYARAA 190 TVAVLEGVNDHENLGSIFRNAAGL VDAVVFG+GCADPLYRRAVRVSMGHALLVPYARAA Sbjct 126 TVAVLEGVNDHENLGSIFRNAAGLGVDAVVFGSGCADPLYRRAVRVSMGHALLVPYARAA 185 Query 191 DWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISD 250 WP EL TL+E+GFRL+AMTP G+AC LPEA+ A +R+A+LVGAEGPGLT A LR+SD Sbjct 186 CWPAELETLRENGFRLMAMTPQGSACALPEAMTAARDDRVAVLVGAEGPGLTPATLRLSD 245 Query 251 VRVRIPMSRGTDSLNVATAAALAFYERTRSGHHIGPG 287 VRVRIPMSRGTDSLNVATAAALAFYER RS G G Sbjct 246 VRVRIPMSRGTDSLNVATAAALAFYERARSTTRGGDG 282 >gi|296169646|ref|ZP_06851264.1| SpoU rRNA methylase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895643|gb|EFG75339.1| SpoU rRNA methylase [Mycobacterium parascrofulaceum ATCC BAA-614] Length=277 Score = 409 bits (1051), Expect = 3e-112, Method: Compositional matrix adjust. Identities = 207/253 (82%), Positives = 222/253 (88%), Gaps = 0/253 (0%) Query 29 FRDLNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPLALFGTDRRLAELKDDLAGVGA 88 FRDLNS+DRRPDLP+GK LVIAEGVLVVQRMLASRFT AL GTDRRLAEL DLAG Sbjct 24 FRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFTAHALLGTDRRLAELAGDLAGRAV 83 Query 89 PYYRASADVMARVIGFHLNRGVLAAAGRVPEPSVAQVVAGARTVAVLEGVNDHENLGSIF 148 P+YR SA+VMA+V+GFHLNRGVLAAA RVPEP+VA +V GARTVAVLEGVNDHENLGSIF Sbjct 84 PFYRTSAEVMAQVVGFHLNRGVLAAARRVPEPTVAGLVEGARTVAVLEGVNDHENLGSIF 143 Query 149 RNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYARAADWPTELMTLKESGFRLLA 208 RNAAGL VDAVVFG+GCADPLYRRAVRVSMGHALLVPYARA DWP EL LK+ GFR+LA Sbjct 144 RNAAGLGVDAVVFGSGCADPLYRRAVRVSMGHALLVPYARATDWPAELKMLKQKGFRVLA 203 Query 209 MTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISDVRVRIPMSRGTDSLNVAT 268 MTP AC LPEA+AA ERIA++VGAEGPGLT A LR+SD RVRIPMSRGTDSLNVAT Sbjct 204 MTPDSTACALPEAMAAARDERIAVVVGAEGPGLTPATLRLSDARVRIPMSRGTDSLNVAT 263 Query 269 AAALAFYERTRSG 281 AAALAFYER R G Sbjct 264 AAALAFYERARLG 276 >gi|315442740|ref|YP_004075619.1| rRNA methylase [Mycobacterium sp. Spyr1] gi|315261043|gb|ADT97784.1| rRNA methylase [Mycobacterium sp. Spyr1] Length=271 Score = 404 bits (1037), Expect = 1e-110, Method: Compositional matrix adjust. Identities = 201/268 (75%), Positives = 230/268 (86%), Gaps = 0/268 (0%) Query 13 LDVQDVCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPLALFGT 72 LDV D+ DP DPRLDDFRDLNS+DRRPDLP+GK LVIAEGVLVVQRMLASRF P AL GT Sbjct 2 LDVVDITDPADPRLDDFRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFVPRALLGT 61 Query 73 DRRLAELKDDLAGVGAPYYRASADVMARVIGFHLNRGVLAAAGRVPEPSVAQVVAGARTV 132 DRRL EL DL G+ AP+YRA+A+VMA IGFHLNRGVLA+A R PE +VA+V+ GARTV Sbjct 62 DRRLTELGTDLDGLAAPFYRATAEVMAEAIGFHLNRGVLASASRAPELTVAEVLDGARTV 121 Query 133 AVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYARAADW 192 AVLEGVNDHENLGS+FRNAAGL VDAV+FG+GCADPLYRRAVRVSMGHALLVP+ARAA+W Sbjct 122 AVLEGVNDHENLGSVFRNAAGLGVDAVIFGSGCADPLYRRAVRVSMGHALLVPFARAANW 181 Query 193 PTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISDVR 252 P +L L+++ FRLLAMTP L +A++ ++ ERIA+LVGAEGPGL +R +DVR Sbjct 182 PADLNILRDNDFRLLAMTPDPTVPTLADAVSGLTEERIAILVGAEGPGLKEHTMRSADVR 241 Query 253 VRIPMSRGTDSLNVATAAALAFYERTRS 280 VRIPM+RGTDSLNVATAAALAFYER RS Sbjct 242 VRIPMARGTDSLNVATAAALAFYERDRS 269 >gi|108801430|ref|YP_641627.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium sp. MCS] gi|119870583|ref|YP_940535.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium sp. KMS] gi|108771849|gb|ABG10571.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS] gi|119696672|gb|ABL93745.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS] Length=270 Score = 403 bits (1035), Expect = 2e-110, Method: Compositional matrix adjust. Identities = 208/267 (78%), Positives = 225/267 (85%), Gaps = 0/267 (0%) Query 15 VQDVCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPLALFGTDR 74 V DV DP DPRLDDFRDLNSIDRRPDLP+GK LVIAEGVLVVQRM+ASRFTP AL GTDR Sbjct 4 VIDVDDPADPRLDDFRDLNSIDRRPDLPSGKGLVIAEGVLVVQRMVASRFTPRALLGTDR 63 Query 75 RLAELKDDLAGVGAPYYRASADVMARVIGFHLNRGVLAAAGRVPEPSVAQVVAGARTVAV 134 RL EL DL V AP+YRA A+VMA V+GFHLNRGVLA+A R PE SVA + GARTVAV Sbjct 64 RLTELGTDLDAVDAPFYRADAEVMAEVVGFHLNRGVLASASRPPEISVADALDGARTVAV 123 Query 135 LEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYARAADWPT 194 LEGVNDHENLGSIFRNAAGL VDAV+FG GCADPLYRRAVRVSMGHALLVP+ARAA WP Sbjct 124 LEGVNDHENLGSIFRNAAGLGVDAVIFGAGCADPLYRRAVRVSMGHALLVPFARAAAWPD 183 Query 195 ELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISDVRVR 254 EL TL++ GF+LLAMTP A L A+ A++ ER+A LVGAEGPGLT +R SD RVR Sbjct 184 ELNTLRDKGFQLLAMTPDPAADTLATAMTALAGERVAFLVGAEGPGLTERVMRASDRRVR 243 Query 255 IPMSRGTDSLNVATAAALAFYERTRSG 281 IPMSRGTDSLNVATAAALAFYER RSG Sbjct 244 IPMSRGTDSLNVATAAALAFYERVRSG 270 >gi|333989447|ref|YP_004522061.1| rRNA methyltransferase [Mycobacterium sp. JDM601] gi|333485415|gb|AEF34807.1| rRNA methyltransferase [Mycobacterium sp. JDM601] Length=275 Score = 402 bits (1034), Expect = 2e-110, Method: Compositional matrix adjust. Identities = 206/268 (77%), Positives = 227/268 (85%), Gaps = 1/268 (0%) Query 13 LDVQDVCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPLALFGT 72 LDV D+ DP D RLDDFRDLNS+DRRPDLPTGK LVIAEGVLVVQRML SR++P AL GT Sbjct 5 LDVVDIDDPRDSRLDDFRDLNSVDRRPDLPTGKGLVIAEGVLVVQRMLVSRYSPRALLGT 64 Query 73 DRRLAELKDDLAGV-GAPYYRASADVMARVIGFHLNRGVLAAAGRVPEPSVAQVVAGART 131 DRRL EL DDLA V PYYR SA+VMA V+GFHLNRGVLAAA RVPEP+V VVA ART Sbjct 65 DRRLVELADDLAVVPDVPYYRVSAEVMAEVVGFHLNRGVLAAASRVPEPTVTDVVADART 124 Query 132 VAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYARAAD 191 +AVLEGVNDHENLGSIFRN AGL VDAVVFG+GCADPLYRRAVRVSMGHALLVP+AR+ D Sbjct 125 IAVLEGVNDHENLGSIFRNGAGLGVDAVVFGSGCADPLYRRAVRVSMGHALLVPFARSTD 184 Query 192 WPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISDV 251 WP +L L++ GFRLLAMTP A L A+A V + +A+LVGAEGPGL+ A+R SD+ Sbjct 185 WPADLAMLRDRGFRLLAMTPDPRADALSTAMAKVHDDPVAVLVGAEGPGLSEQAMRASDL 244 Query 252 RVRIPMSRGTDSLNVATAAALAFYERTR 279 RVRIPMSRGTDSLNVATAAALAFYERTR Sbjct 245 RVRIPMSRGTDSLNVATAAALAFYERTR 272 >gi|120405985|ref|YP_955814.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium vanbaalenii PYR-1] gi|119958803|gb|ABM15808.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium vanbaalenii PYR-1] Length=275 Score = 402 bits (1033), Expect = 3e-110, Method: Compositional matrix adjust. Identities = 200/271 (74%), Positives = 230/271 (85%), Gaps = 0/271 (0%) Query 11 DGLDVQDVCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPLALF 70 + ++V DV DP DPRLDDFRDLNS+DRRPDLP+GK LVIAEGVLVVQRMLASRF P AL Sbjct 4 NNVEVVDVTDPADPRLDDFRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFVPRALL 63 Query 71 GTDRRLAELKDDLAGVGAPYYRASADVMARVIGFHLNRGVLAAAGRVPEPSVAQVVAGAR 130 GTDRRL EL DLAG+ AP+YRASA+VMA V+GFHLNRGVLA+A R PE +V V+ GAR Sbjct 64 GTDRRLTELGTDLAGLDAPFYRASAEVMADVVGFHLNRGVLASASRAPELTVPHVLDGAR 123 Query 131 TVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYARAA 190 TVAVLEGVNDHENLGS+FRNAAGL VD V+FG+GCADPLYRRAVRVSMGHALLVP+A+AA Sbjct 124 TVAVLEGVNDHENLGSVFRNAAGLGVDGVIFGSGCADPLYRRAVRVSMGHALLVPFAKAA 183 Query 191 DWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISD 250 +WP +L L++ GFRLLAMTP L +A++ ++ +R+A+LVGAEGPGL +R SD Sbjct 184 NWPGDLELLRDQGFRLLAMTPDPTVQTLAQAMSGLAEQRVAILVGAEGPGLKEHTMRASD 243 Query 251 VRVRIPMSRGTDSLNVATAAALAFYERTRSG 281 VRVRIPMSRGTDSLNVATAAALAFYER R G Sbjct 244 VRVRIPMSRGTDSLNVATAAALAFYERDRLG 274 >gi|126437415|ref|YP_001073106.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium sp. JLS] gi|126237215|gb|ABO00616.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS] Length=270 Score = 400 bits (1027), Expect = 2e-109, Method: Compositional matrix adjust. Identities = 205/267 (77%), Positives = 224/267 (84%), Gaps = 0/267 (0%) Query 15 VQDVCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPLALFGTDR 74 V DV DP DPRLDDFRDLNSIDRRPDLP+GK LVIAEGVLVVQRM+ASRFTP AL GTDR Sbjct 4 VIDVDDPADPRLDDFRDLNSIDRRPDLPSGKGLVIAEGVLVVQRMVASRFTPRALLGTDR 63 Query 75 RLAELKDDLAGVGAPYYRASADVMARVIGFHLNRGVLAAAGRVPEPSVAQVVAGARTVAV 134 RL EL DL V AP+YRA A+VMA V+GFHLNRGVLA+A R PE SVA + GAR VAV Sbjct 64 RLTELGTDLDAVDAPFYRADAEVMAEVVGFHLNRGVLASASRPPEISVADALDGARAVAV 123 Query 135 LEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYARAADWPT 194 LEGVNDHENLGSIFRNAAGL VDAV+FG GCADPLYRRAVRVSMGHAL+VP+ARAA WP Sbjct 124 LEGVNDHENLGSIFRNAAGLGVDAVIFGAGCADPLYRRAVRVSMGHALMVPFARAATWPD 183 Query 195 ELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISDVRVR 254 EL TL++ GF+LLAMTP A L A+ A++ E++A LVGAEGPGLT +R SD RVR Sbjct 184 ELNTLRDKGFQLLAMTPDPAADTLATAMTALAGEKVAFLVGAEGPGLTERVMRASDRRVR 243 Query 255 IPMSRGTDSLNVATAAALAFYERTRSG 281 IPMSRGTDSLNVATAAALAFYER RSG Sbjct 244 IPMSRGTDSLNVATAAALAFYERVRSG 270 >gi|145222306|ref|YP_001132984.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium gilvum PYR-GCK] gi|145214792|gb|ABP44196.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK] Length=268 Score = 396 bits (1018), Expect = 2e-108, Method: Compositional matrix adjust. Identities = 197/264 (75%), Positives = 226/264 (86%), Gaps = 0/264 (0%) Query 17 DVCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPLALFGTDRRL 76 D+ DP DPRLD FRDLNS+DRRPDLP+GK LVIAEGVLVVQRMLASRF P AL GTDRRL Sbjct 3 DITDPADPRLDPFRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFVPRALLGTDRRL 62 Query 77 AELKDDLAGVGAPYYRASADVMARVIGFHLNRGVLAAAGRVPEPSVAQVVAGARTVAVLE 136 EL DL G+ AP+YRA+A+VMA IGFHLNRGVLA+A R PE +VA+V+ GARTVAVLE Sbjct 63 TELGTDLDGLAAPFYRATAEVMAEAIGFHLNRGVLASASRAPELTVAEVLDGARTVAVLE 122 Query 137 GVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYARAADWPTEL 196 GVNDHENLGS+FRNAAGL VDAV+FG+GCADPLYRRAVRVSMGHALLVP+ARAA+WP +L Sbjct 123 GVNDHENLGSVFRNAAGLGVDAVIFGSGCADPLYRRAVRVSMGHALLVPFARAANWPADL 182 Query 197 MTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISDVRVRIP 256 L+++ FRLLAMTP L +A++ ++ ERIA+LVGAEGPGL +R +DVRVRIP Sbjct 183 NILRDNDFRLLAMTPDPTVPTLADAVSGLTEERIAILVGAEGPGLKEHTMRSADVRVRIP 242 Query 257 MSRGTDSLNVATAAALAFYERTRS 280 M+RGTDSLNVATAAALAFYER RS Sbjct 243 MARGTDSLNVATAAALAFYERDRS 266 >gi|118469110|ref|YP_889920.1| 23s ribosomal RNA methyltransferase [Mycobacterium smegmatis str. MC2 155] gi|118170397|gb|ABK71293.1| 23s ribosomal RNA methyltransferase [Mycobacterium smegmatis str. MC2 155] Length=277 Score = 392 bits (1007), Expect = 3e-107, Method: Compositional matrix adjust. Identities = 201/274 (74%), Positives = 225/274 (83%), Gaps = 4/274 (1%) Query 13 LDVQDVCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPLALFGT 72 L V D+ DP DPR+DDFRDLNS+DRRPDLPTGKALVIAEGVLVVQRMLASRF P AL GT Sbjct 4 LQVIDIDDPADPRIDDFRDLNSVDRRPDLPTGKALVIAEGVLVVQRMLASRFIPRALLGT 63 Query 73 DRRLAELKDDL----AGVGAPYYRASADVMARVIGFHLNRGVLAAAGRVPEPSVAQVVAG 128 DRRL EL DL P+YRASA+VMA IGFHLNRGVLA+A R E +V V+A Sbjct 64 DRRLGELAADLDRYPQYADVPFYRASAEVMAEAIGFHLNRGVLASAPRAAELTVDDVIAD 123 Query 129 ARTVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYAR 188 ART+AVLEGVNDHENLGSIFRNAAGL+VDAV+FG GCADPLYRRAVRVSMGHALLVP+AR Sbjct 124 ARTIAVLEGVNDHENLGSIFRNAAGLAVDAVIFGAGCADPLYRRAVRVSMGHALLVPFAR 183 Query 189 AADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRI 248 A+ WPT+L L++ GFRLLAMTP +A L +A+ + +R+A+LVGAEGPGLT +R Sbjct 184 ASSWPTDLELLRDKGFRLLAMTPDPSAATLSDAMVQLEGDRVAILVGAEGPGLTERTMRA 243 Query 249 SDVRVRIPMSRGTDSLNVATAAALAFYERTRSGH 282 SDVRVRIPMSRGTDSLNVATAAALAFYER R H Sbjct 244 SDVRVRIPMSRGTDSLNVATAAALAFYERARLSH 277 >gi|169627980|ref|YP_001701629.1| putative tRNA/rRNA methyltransferase [Mycobacterium abscessus ATCC 19977] gi|169239947|emb|CAM60975.1| Hypothetical tRNA/rRNA methyltransferase [Mycobacterium abscessus] Length=270 Score = 384 bits (987), Expect = 7e-105, Method: Compositional matrix adjust. Identities = 197/265 (75%), Positives = 221/265 (84%), Gaps = 0/265 (0%) Query 15 VQDVCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPLALFGTDR 74 V DV DP D RLD FRDLNS+DRRPDLP+GK LVIAEGVLVVQRMLASRF PLAL GTDR Sbjct 3 VIDVHDPADSRLDSFRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFRPLALLGTDR 62 Query 75 RLAELKDDLAGVGAPYYRASADVMARVIGFHLNRGVLAAAGRVPEPSVAQVVAGARTVAV 134 RL+EL DL V PYYRASA+VMA V+GFHLNRGVLAA+ R E A ++ ARTVAV Sbjct 63 RLSELAADLEPVDVPYYRASAEVMAEVVGFHLNRGVLAASRRPEELPAADLLQTARTVAV 122 Query 135 LEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYARAADWPT 194 LEGVNDHENLGSIFRNAAG+ VDAV+FG+GCADPLYRRAVRVSMGHALLVP+AR +WP Sbjct 123 LEGVNDHENLGSIFRNAAGMGVDAVLFGSGCADPLYRRAVRVSMGHALLVPFARLPEWPK 182 Query 195 ELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISDVRVR 254 L L++SGFRLLAMTP G++ L +AI + E++AL+VGAEGPGLT ALR SD+RVR Sbjct 183 SLYRLRDSGFRLLAMTPAGDSKALADAIPPLRAEKVALMVGAEGPGLTDVALRASDLRVR 242 Query 255 IPMSRGTDSLNVATAAALAFYERTR 279 IPM+ GTDSLNVATAAALAFYER R Sbjct 243 IPMANGTDSLNVATAAALAFYERAR 267 >gi|325674569|ref|ZP_08154256.1| SpoU rRNA methylase [Rhodococcus equi ATCC 33707] gi|325554155|gb|EGD23830.1| SpoU rRNA methylase [Rhodococcus equi ATCC 33707] Length=268 Score = 360 bits (925), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 184/267 (69%), Positives = 216/267 (81%), Gaps = 3/267 (1%) Query 15 VQDVCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPLALFGTDR 74 V D+ DP DPRL D+RDLNS DRRPDLP GK LVIAEGVLVVQRMLASRFTP +L G DR Sbjct 4 VIDIADPADPRLGDYRDLNSSDRRPDLPGGKGLVIAEGVLVVQRMLASRFTPNSLLGVDR 63 Query 75 RLAELKDDLAGVGAPYYRASADVMARVIGFHLNRGVLAAAGRVPEPSVAQVVAGARTVAV 134 RL EL DL GV P+YR +ADVMA+V+GFHLNRGVLAAA R P V V+ ARTVAV Sbjct 64 RLTELSADLEGVDVPFYRTTADVMAQVVGFHLNRGVLAAAHRPPALDVEDVLRDARTVAV 123 Query 135 LEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYARAADWPT 194 LEGVNDHEN+GS+FRNAAGL VDA++FG ADPLYRRAVRVSMGHAL VP+A+ +WP Sbjct 124 LEGVNDHENIGSMFRNAAGLGVDAILFGAAVADPLYRRAVRVSMGHALRVPFAQIPEWPR 183 Query 195 ELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISDVRVR 254 L L++ GF+L+++TP+ +A L EA+ + ER+ALL+GAEGPGLT A+R++DVR R Sbjct 184 GLNILRDRGFQLISLTPNPSAPTLAEAM---TGERVALLLGAEGPGLTEDAMRVTDVRAR 240 Query 255 IPMSRGTDSLNVATAAALAFYERTRSG 281 IPMS GTDSLNVATAAA+AFYER R+G Sbjct 241 IPMSAGTDSLNVATAAAMAFYERIRTG 267 >gi|312138435|ref|YP_004005771.1| tRNA/rRNA methyltransferase [Rhodococcus equi 103S] gi|311887774|emb|CBH47086.1| putative tRNA/rRNA methyltransferase [Rhodococcus equi 103S] Length=268 Score = 359 bits (922), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 184/267 (69%), Positives = 215/267 (81%), Gaps = 3/267 (1%) Query 15 VQDVCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPLALFGTDR 74 V D+ DP DPRL D+RDLNS DRRPDLP GK LVIAEGVLVVQRMLASRFTP +L G DR Sbjct 4 VIDIADPADPRLGDYRDLNSSDRRPDLPGGKGLVIAEGVLVVQRMLASRFTPNSLLGVDR 63 Query 75 RLAELKDDLAGVGAPYYRASADVMARVIGFHLNRGVLAAAGRVPEPSVAQVVAGARTVAV 134 RL EL DL GV P+YR +ADVMA+V+GFHLNRGVLAAA R P V V+ ARTVAV Sbjct 64 RLTELSADLEGVDVPFYRTTADVMAQVVGFHLNRGVLAAAHRPPALDVEDVLRDARTVAV 123 Query 135 LEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYARAADWPT 194 LEGVNDHEN+GS+FRNAAGL VDA++FG ADPLYRRAVRVSMGHAL VP+A+ +WP Sbjct 124 LEGVNDHENIGSMFRNAAGLGVDAILFGAAVADPLYRRAVRVSMGHALRVPFAQIPEWPR 183 Query 195 ELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISDVRVR 254 L L++ GF+L+++TP+ A L EA+ + ER+ALL+GAEGPGLT A+R++DVR R Sbjct 184 GLNILRDRGFQLISLTPNPAAPTLAEAM---TGERVALLLGAEGPGLTEDAMRVTDVRAR 240 Query 255 IPMSRGTDSLNVATAAALAFYERTRSG 281 IPMS GTDSLNVATAAA+AFYER R+G Sbjct 241 IPMSAGTDSLNVATAAAMAFYERIRTG 267 >gi|111021948|ref|YP_704920.1| RNA methyltransferase [Rhodococcus jostii RHA1] gi|110821478|gb|ABG96762.1| probable RNA methyltransferase [Rhodococcus jostii RHA1] Length=278 Score = 357 bits (917), Expect = 8e-97, Method: Compositional matrix adjust. Identities = 182/267 (69%), Positives = 209/267 (79%), Gaps = 3/267 (1%) Query 15 VQDVCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPLALFGTDR 74 V D+ DP D RLDDFRDLNS DRRPDLP GK LVIAEGVLV QR+L SRF P+AL G DR Sbjct 14 VIDITDPADTRLDDFRDLNSSDRRPDLPEGKGLVIAEGVLVAQRLLTSRFDPIALLGVDR 73 Query 75 RLAELKDDLAGVGAPYYRASADVMARVIGFHLNRGVLAAAGRVPEPSVAQVVAGARTVAV 134 RL EL DDLA V P+YR +ADVMA V+GFHLNRGVLAAA R + V+ RTVAV Sbjct 74 RLEELTDDLAHVDVPFYRTTADVMAEVVGFHLNRGVLAAARRPAPLELPDVLEHTRTVAV 133 Query 135 LEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYARAADWPT 194 LEGVNDHENLGS+FRNAAGL VDAVVFG GCADPLYRRAVRVSMGH L VP+A WP Sbjct 134 LEGVNDHENLGSMFRNAAGLGVDAVVFGKGCADPLYRRAVRVSMGHVLRVPFAHVTKWPH 193 Query 195 ELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISDVRVR 254 +L L+E GF+L+++TP+ A L EA+ E++ALL+GAEGPGLT A+R +D+R R Sbjct 194 DLDALRERGFQLISLTPNPEAVTLAEAMTG---EKVALLLGAEGPGLTEHAMRATDIRAR 250 Query 255 IPMSRGTDSLNVATAAALAFYERTRSG 281 IPM+ GTDSLNVATAAA+AFYER R+G Sbjct 251 IPMAPGTDSLNVATAAAMAFYERVRTG 277 >gi|226364458|ref|YP_002782240.1| RNA methyltransferase [Rhodococcus opacus B4] gi|226242947|dbj|BAH53295.1| putative RNA methyltransferase [Rhodococcus opacus B4] Length=278 Score = 357 bits (917), Expect = 9e-97, Method: Compositional matrix adjust. Identities = 183/267 (69%), Positives = 210/267 (79%), Gaps = 3/267 (1%) Query 15 VQDVCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPLALFGTDR 74 V D+ DP D RLDDFRDLNS DRRPDLP GK LVIAEGVLV QR+LASRF P+AL G DR Sbjct 14 VIDITDPADTRLDDFRDLNSSDRRPDLPEGKGLVIAEGVLVAQRLLASRFDPIALLGVDR 73 Query 75 RLAELKDDLAGVGAPYYRASADVMARVIGFHLNRGVLAAAGRVPEPSVAQVVAGARTVAV 134 RL EL DL GV PYYR +ADVMA V+GFHLNRGVLAAA R + V+ +RTVAV Sbjct 74 RLEELAGDLDGVDVPYYRTTADVMAEVVGFHLNRGVLAAARRPAPLELPDVLEHSRTVAV 133 Query 135 LEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYARAADWPT 194 LEGVNDHENLGS+FRNAAGL VDAVVFG GCADPLYRRAVRVSMGH L VP+A WP Sbjct 134 LEGVNDHENLGSMFRNAAGLGVDAVVFGKGCADPLYRRAVRVSMGHVLRVPFAHVTKWPH 193 Query 195 ELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISDVRVR 254 +L L+E GF+L+++TP+ A L EA+ E++ALL+GAEGPGLT A+R +D+R R Sbjct 194 DLDALRERGFQLISLTPNPGAVTLAEAMTG---EKVALLLGAEGPGLTEHAMRATDIRAR 250 Query 255 IPMSRGTDSLNVATAAALAFYERTRSG 281 IPM+ GTDSLNVATAAA+AFYER R+G Sbjct 251 IPMAPGTDSLNVATAAAMAFYERVRTG 277 >gi|54022618|ref|YP_116860.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM 10152] gi|54014126|dbj|BAD55496.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM 10152] Length=267 Score = 355 bits (911), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 186/267 (70%), Positives = 213/267 (80%), Gaps = 3/267 (1%) Query 14 DVQDVCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPLALFGTD 73 +V DV DP DPR+DDFRDL+ DRRPDLP GK LVIAEGV+VVQRML SRFTP AL G Sbjct 3 EVIDVDDPADPRVDDFRDLSDADRRPDLPGGKGLVIAEGVVVVQRMLDSRFTPSALLGVA 62 Query 74 RRLAELKDDLAGVGAPYYRASADVMARVIGFHLNRGVLAAAGRVPEPSVAQVVAGARTVA 133 RR +L DLA V PYYR SA+VMA ++GFHLNRGVLA A R PE S+A+VVA ARTVA Sbjct 63 RRYDQLAADLAAVDVPYYRTSAEVMAEIVGFHLNRGVLAVARRPPELSMAEVVARARTVA 122 Query 134 VLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYARAADWP 193 VLEGVNDHENLGS+FRNAAGL VDAV+FG C+DPLYRR+VRVSMGH L VP+AR WP Sbjct 123 VLEGVNDHENLGSMFRNAAGLGVDAVLFGDRCSDPLYRRSVRVSMGHVLRVPFARVPAWP 182 Query 194 TELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISDVRV 253 L TL+E GF+L+AMTP A L +A++ ER+ALL+GAEGPGLTA A+R DVR Sbjct 183 DGLATLREHGFQLIAMTPDPAARNL---ASAMTGERVALLLGAEGPGLTAEAMRACDVRA 239 Query 254 RIPMSRGTDSLNVATAAALAFYERTRS 280 RIPM+ GTDSLNVATAAA+AFYER R+ Sbjct 240 RIPMTPGTDSLNVATAAAMAFYERVRT 266 >gi|326384165|ref|ZP_08205847.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL B-59395] gi|326197030|gb|EGD54222.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL B-59395] Length=288 Score = 351 bits (900), Expect = 8e-95, Method: Compositional matrix adjust. Identities = 189/280 (68%), Positives = 214/280 (77%), Gaps = 14/280 (5%) Query 11 DGL--DVQDVCDPDDPRLDDFRDLNSIDRRPDLP------TGKALVIAEGVLVVQRMLAS 62 DGL DV D+ DP DPR+DDFRDLNS+DRRPD+P GK LVIAEGVLV QRM+AS Sbjct 11 DGLAVDVIDIVDPSDPRVDDFRDLNSVDRRPDVPALPGGRVGKGLVIAEGVLVAQRMIAS 70 Query 63 RFTPLALFGTDRRLAELKDDL---AGVGAPYYRASADVMARVIGFHLNRGVLAAAGRVPE 119 RF P A FG DRR+ EL DL + G P+YRASA+VMA VIGFHLNRGVLAAA R E Sbjct 71 RFAPHAFFGVDRRMGELDADLRDPSLRGVPFYRASAEVMAEVIGFHLNRGVLAAARRPVE 130 Query 120 PSVAQVVAGARTVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMG 179 +V V+ ARTVAVLEGVNDHEN+GSIFRNAAGL VDAVVFG GCADPLYRR VRVSMG Sbjct 131 RTVVDVIEHARTVAVLEGVNDHENIGSIFRNAAGLGVDAVVFGAGCADPLYRRCVRVSMG 190 Query 180 HALLVPYARAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGP 239 HALLVP+A++ DWP +L L++SGF +A+TP + L AVS ++A LVGAEGP Sbjct 191 HALLVPFAKSQDWPGDLDVLRDSGFTTVALTPGEGSVPLA---GAVSGGKVAFLVGAEGP 247 Query 240 GLTAAALRISDVRVRIPMSRGTDSLNVATAAALAFYERTR 279 GL +R DVR RIPMSRGTDSLNVATAAA+AFYER R Sbjct 248 GLAEHTMRRCDVRARIPMSRGTDSLNVATAAAVAFYERAR 287 >gi|226308108|ref|YP_002768068.1| RNA methyltransferase [Rhodococcus erythropolis PR4] gi|226187225|dbj|BAH35329.1| putative RNA methyltransferase [Rhodococcus erythropolis PR4] Length=281 Score = 350 bits (898), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 180/278 (65%), Positives = 217/278 (79%), Gaps = 4/278 (1%) Query 5 RCAQHPDGL-DVQDVCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRMLASR 63 RC +H + V D+ DP DPRLDDFRDLNS DRRPDLP GK LVIAEGV V QR+L SR Sbjct 6 RCVRHDRPVVHVIDISDPADPRLDDFRDLNSSDRRPDLPEGKGLVIAEGVFVTQRLLTSR 65 Query 64 FTPLALFGTDRRLAELKDDLAGVGAPYYRASADVMARVIGFHLNRGVLAAAGRVPEPSVA 123 F P++L G +RRL EL DDL GV P+YR SA+VMA V+GFHLNRGVLAAA R +V+ Sbjct 66 FQPISLLGVERRLLELADDLDGVDVPFYRTSAEVMAEVVGFHLNRGVLAAAARPAPLAVS 125 Query 124 QVVAGARTVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALL 183 V+ A+TV VLEGVNDHENLGS+FRNAAGL VDAV+FG GCADPLYRR+VRVSMGH L Sbjct 126 DVLKDAKTVVVLEGVNDHENLGSMFRNAAGLGVDAVLFGKGCADPLYRRSVRVSMGHVLR 185 Query 184 VPYARAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTA 243 VP+A A WP +L L+ +GF+L+++TP+ A L EA+ E++ALL+GAEGPGLT Sbjct 186 VPFAHVAKWPHDLDELRGNGFQLISLTPNPEAVTLAEAMTG---EKVALLLGAEGPGLTE 242 Query 244 AALRISDVRVRIPMSRGTDSLNVATAAALAFYERTRSG 281 A+R +D+R +IPM+ GTDSLNVATAAA+AFYER R+G Sbjct 243 HAMRATDIRAKIPMAPGTDSLNVATAAAMAFYERVRTG 280 >gi|229488371|ref|ZP_04382237.1| rRNA methyltransferase [Rhodococcus erythropolis SK121] gi|229323875|gb|EEN89630.1| rRNA methyltransferase [Rhodococcus erythropolis SK121] Length=268 Score = 348 bits (894), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 177/267 (67%), Positives = 212/267 (80%), Gaps = 3/267 (1%) Query 15 VQDVCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPLALFGTDR 74 V D+ DP DPRLDDFRDLNS DRRPDLP GK LVIAEGV V QR+L SRF P++L G +R Sbjct 4 VIDISDPADPRLDDFRDLNSSDRRPDLPEGKGLVIAEGVFVTQRLLTSRFEPISLLGVER 63 Query 75 RLAELKDDLAGVGAPYYRASADVMARVIGFHLNRGVLAAAGRVPEPSVAQVVAGARTVAV 134 RL EL DDL GV P+YR SA+VMA V+GFHLNRGVLAAA R +V+ V+ A+TV V Sbjct 64 RLLELADDLDGVDVPFYRTSAEVMAEVVGFHLNRGVLAAAARPAPLAVSDVLKDAKTVVV 123 Query 135 LEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYARAADWPT 194 LEGVNDHENLGS+FRNAAGL VDAV+FG GCADPLYRR+VRVSMGH L VP+A A WP Sbjct 124 LEGVNDHENLGSMFRNAAGLGVDAVLFGKGCADPLYRRSVRVSMGHVLRVPFAHVAKWPH 183 Query 195 ELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISDVRVR 254 +L L+ +GF+L+++TP+ A L EA+ E++ALL+GAEGPGLT A+R +D+R + Sbjct 184 DLDELRGNGFQLISLTPNPEAVTLAEAMTG---EKVALLLGAEGPGLTEHAMRATDIRAK 240 Query 255 IPMSRGTDSLNVATAAALAFYERTRSG 281 IPM+ GTDSLNVATAAA+AFYER R+G Sbjct 241 IPMAPGTDSLNVATAAAMAFYERVRTG 267 >gi|343928228|ref|ZP_08767683.1| putative RNA methyltransferase [Gordonia alkanivorans NBRC 16433] gi|343761926|dbj|GAA14609.1| putative RNA methyltransferase [Gordonia alkanivorans NBRC 16433] Length=284 Score = 345 bits (884), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 179/278 (65%), Positives = 215/278 (78%), Gaps = 12/278 (4%) Query 13 LDVQDVCDPDDPRLDDFRDLNSIDRRPDLPT------GKALVIAEGVLVVQRMLASRFTP 66 ++V D+ DP DPR++DFRDLNS+DRRPDLP G+ LVIAEGVLV QRM+ASRF+ Sbjct 6 VEVIDIDDPQDPRVEDFRDLNSVDRRPDLPVLPGGRPGRGLVIAEGVLVAQRMIASRFSA 65 Query 67 LALFGTDRRLAELKDDL---AGVGAPYYRASADVMARVIGFHLNRGVLAAAGRVPEPSVA 123 A G D+RL EL DDL + G P++RASA+VMA ++GFHLNRGVLA A R SV Sbjct 66 HAFLGVDKRLEELDDDLRDPSLSGVPFFRASAEVMAEIVGFHLNRGVLAVARRPEVLSVP 125 Query 124 QVVAGARTVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALL 183 ++ ARTVA+LEGVNDHEN+GSIFRNAAGL VDAV+FG GCADPLYRR VRVSMGHALL Sbjct 126 DILETARTVAILEGVNDHENIGSIFRNAAGLGVDAVLFGQGCADPLYRRCVRVSMGHALL 185 Query 184 VPYARAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTA 243 VP+A+ +WP L L+ FRL++MTP +A L EA+ A E++ LVGAEGPGLTA Sbjct 186 VPFAKFDEWPRGLDELRSRDFRLVSMTPDPDAVTLAEAVDA---EKVGFLVGAEGPGLTA 242 Query 244 AALRISDVRVRIPMSRGTDSLNVATAAALAFYERTRSG 281 +A+ +DV+ RIPMSRGTDSLNVATAAA+AFYER RSG Sbjct 243 SAMAATDVKARIPMSRGTDSLNVATAAAVAFYERVRSG 280 >gi|262201234|ref|YP_003272442.1| tRNA/rRNA methyltransferase SpoU [Gordonia bronchialis DSM 43247] gi|262084581|gb|ACY20549.1| tRNA/rRNA methyltransferase (SpoU) [Gordonia bronchialis DSM 43247] Length=284 Score = 331 bits (848), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 174/262 (67%), Positives = 204/262 (78%), Gaps = 12/262 (4%) Query 29 FRDLNSIDRRPDLPT------GKALVIAEGVLVVQRMLASRFTPLALFGTDRRLAELKDD 82 FRDLNS+DRRPDLP GK LVIAEGVLV QRM+ASRFTP A G D+RLAEL D Sbjct 22 FRDLNSVDRRPDLPALPGGRPGKGLVIAEGVLVAQRMIASRFTPHAFLGVDKRLAELDAD 81 Query 83 L---AGVGAPYYRASADVMARVIGFHLNRGVLAAAGRVPEPSVAQVVAGARTVAVLEGVN 139 L + G P+YRASA+VMA V+GFHLNRGVLA A R P +V +++A AR+VA+LEGVN Sbjct 82 LRTPSVSGVPFYRASAEVMAAVVGFHLNRGVLAVARRPPVRTVDEILANARSVAILEGVN 141 Query 140 DHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYARAADWPTELMTL 199 DHEN+GSIFRNAAGL +DAV+FG GCADPLYRR VRVSMGHALLVP+AR +WP L L Sbjct 142 DHENIGSIFRNAAGLGIDAVLFGAGCADPLYRRCVRVSMGHALLVPFARFDEWPRGLDAL 201 Query 200 KESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISDVRVRIPMSR 259 + GFRL+++TP A L +A+ A ++ LVGAEGPGL+A A+ +DVR RIPMSR Sbjct 202 RAGGFRLISLTPDPAAMPLAQAVEAT---KVGFLVGAEGPGLSAHAMAATDVRARIPMSR 258 Query 260 GTDSLNVATAAALAFYERTRSG 281 GTDSLNVATAAA+AFYER RSG Sbjct 259 GTDSLNVATAAAIAFYERARSG 280 >gi|333918519|ref|YP_004492100.1| putative ribosomal RNA methyltransferase [Amycolicicoccus subflavus DQS3-9A1] gi|333480740|gb|AEF39300.1| Putative ribosomal RNA methyltransferase [Amycolicicoccus subflavus DQS3-9A1] Length=272 Score = 306 bits (783), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 158/263 (61%), Positives = 189/263 (72%), Gaps = 3/263 (1%) Query 17 DVCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPLALFGTDRRL 76 D+ PDDPR+DDFRDL++ DRRPD P GK LVI EG +VV+RML + F P AL G RR Sbjct 6 DITSPDDPRVDDFRDLSTADRRPDRPGGKGLVIGEGTVVVERMLGTPFEPYALLGVARRY 65 Query 77 AELKDDLAGVGAPYYRASADVMARVIGFHLNRGVLAAAGRVPEPSVAQVVAGARTVAVLE 136 +L L G+ P+YRASAD MA ++GFHLNRGVLA AGR S ++A ART+AVLE Sbjct 66 DQLCGQLRGLEVPFYRASADTMATIVGFHLNRGVLAVAGRPAPRSPRDLLAAARTIAVLE 125 Query 137 GVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYARAADWPTEL 196 GVNDHENLGSIFRNAA L VDAV CADPLYRR+VRVSMGH L VP+A AA WP L Sbjct 126 GVNDHENLGSIFRNAAALGVDAVFLSGRCADPLYRRSVRVSMGHVLRVPFAVAASWPDLL 185 Query 197 MTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISDVRVRIP 256 L+ GF +A+TP + L A+A+ E++A ++GAEGPGL+ L +DVR IP Sbjct 186 GELQRRGFSTVALTPAQPSLPLAHAVAS---EKVAFVLGAEGPGLSEETLESTDVRAHIP 242 Query 257 MSRGTDSLNVATAAALAFYERTR 279 M+ G DSLNVATAAA+AFYER R Sbjct 243 MTTGVDSLNVATAAAVAFYERAR 265 >gi|257057351|ref|YP_003135183.1| rRNA methylase [Saccharomonospora viridis DSM 43017] gi|256587223|gb|ACU98356.1| rRNA methylase [Saccharomonospora viridis DSM 43017] Length=267 Score = 301 bits (772), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 159/263 (61%), Positives = 188/263 (72%), Gaps = 1/263 (0%) Query 17 DVCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPLALFGTDRRL 76 DV D DPRLDDFRDL + DRRPD P G+ LVIAEG +VV+R+L S + AL G +R+ Sbjct 6 DVDDAADPRLDDFRDLTTADRRPDRPGGRGLVIAEGTVVVRRLLDSPYPVRALLGVPKRI 65 Query 77 AELKDDLAGVGAPYYRASADVMARVIGFHLNRGVLAAAGRVPEPSVAQVVAGARTVAVLE 136 AEL DDLA V AP Y SA +M+ V+GFHLNRGVLA A R P+P+ +VVA AR +AVLE Sbjct 66 AELADDLATVNAPAYVTSAQIMSDVVGFHLNRGVLAVADRAPKPTFDEVVANARVLAVLE 125 Query 137 GVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYARAADWPTEL 196 GVNDHENLG++FRNAA VD V+ G CADPLYRR+VRVSMGH L VP+ A WP L Sbjct 126 GVNDHENLGAMFRNAAAFGVDGVLLGASCADPLYRRSVRVSMGHVLRVPFTTAERWPCAL 185 Query 197 MTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISDVRVRIP 256 L+ GF L A+TP A L + +ERIALL G+EG GL+ AAL +D VRIP Sbjct 186 DELRRYGFHLAALTPRSEAVTL-RNVHEAGYERIALLFGSEGHGLSQAALDAADSWVRIP 244 Query 257 MSRGTDSLNVATAAALAFYERTR 279 M+ G DSLNVATAAA+AFYE TR Sbjct 245 MASGVDSLNVATAAAVAFYELTR 267 >gi|225023123|ref|ZP_03712315.1| hypothetical protein CORMATOL_03172 [Corynebacterium matruchotii ATCC 33806] gi|224944346|gb|EEG25555.1| hypothetical protein CORMATOL_03172 [Corynebacterium matruchotii ATCC 33806] Length=308 Score = 292 bits (747), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 156/277 (57%), Positives = 196/277 (71%), Gaps = 13/277 (4%) Query 15 VQDVCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPLALFGTDR 74 + + DP DPRLDDFRDL D RPDLP GK LVIAEG L+V+R+LASR+ L G Sbjct 26 ITHISDPTDPRLDDFRDLKHSDNRPDLPGGKGLVIAEGPLIVERLLASRYPVRTLVGFPA 85 Query 75 RLAELKD-----DLAGVGAPYYRASADVMARVIGFHLNRGVLAAAGRVPEPSVAQVVAGA 129 +L + DLA G Y + +A+V G+ ++RG+LAAA R PE S+++V+ A Sbjct 86 KLDKFLSQPHIADLAA-GIDTYSLDRETLAQVAGYDMHRGLLAAANRAPELSLSEVIKTA 144 Query 130 RTVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYA-- 187 TV VLEGV DHEN+GSIFRNAAGL VDA++FG GCADPLYRR+VRVSMGH L +P+A Sbjct 145 TTVVVLEGVGDHENIGSIFRNAAGLGVDAILFGNGCADPLYRRSVRVSMGHVLRLPHASF 204 Query 188 --RAADWPTELMTLKESGFRLLAMTPHGNACKLPEAI---AAVSHERIALLVGAEGPGLT 242 + +W L LKESGF+L+++TPH +A L +A+ V +E+IALLVGAEGPGLT Sbjct 205 EGKHTNWHYGLDQLKESGFQLVSLTPHEDAVPLDQALYDGNGVPYEKIALLVGAEGPGLT 264 Query 243 AAALRISDVRVRIPMSRGTDSLNVATAAALAFYERTR 279 +R +D+R RIPMS GTDSLNVATAAA+A YER R Sbjct 265 ERTMRRTDIRARIPMSAGTDSLNVATAAAIALYERQR 301 >gi|259507138|ref|ZP_05750038.1| SpoU rRNA methylase family protein [Corynebacterium efficiens YS-314] gi|259165275|gb|EEW49829.1| SpoU rRNA methylase family protein [Corynebacterium efficiens YS-314] Length=278 Score = 290 bits (743), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 156/271 (58%), Positives = 191/271 (71%), Gaps = 6/271 (2%) Query 18 VCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPLALFGTDRRLA 77 + DP D RLDDFRDLN D RPDLP G+ LVIAEG LV R+L SRF AL G +L Sbjct 9 ITDPADTRLDDFRDLNRSDFRPDLPGGRGLVIAEGPLVTGRLLESRFPVRALVGFRGKLD 68 Query 78 ELKDDLAGVGAPYYRASADVMARVIGFHLNRGVLAAAGRVPEPSVAQVVAGARTVAVLEG 137 + P Y + +V+A V GF ++RG+LAAA RV EP+VA V+ GARTV VLEG Sbjct 69 AFLAEHEVGDIPVYEVTREVLAEVAGFDMHRGLLAAADRVEEPTVASVLDGARTVVVLEG 128 Query 138 VNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYARAA----DWP 193 V DHEN+GS+FRNAAG+ VDA++FG GCADPLYRR VRVSMGH L +PYA A W Sbjct 129 VGDHENIGSMFRNAAGMGVDAILFGNGCADPLYRRVVRVSMGHVLRLPYAHLAGTYTTWQ 188 Query 194 TELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISDVRV 253 L L ++GF L+++TP A L +A+A E++ALLVGAEGPGLT A+R +DVR Sbjct 189 RSLTELADAGFHLVSLTPDPEAVHLEDALAG--REKVALLVGAEGPGLTEHAMRATDVRA 246 Query 254 RIPMSRGTDSLNVATAAALAFYERTRSGHHI 284 RIPM+ GTDSLN+AT+AA+AFYER RS H+ Sbjct 247 RIPMAPGTDSLNLATSAAIAFYERDRSQRHL 277 >gi|25027456|ref|NP_737510.1| putative RNA methyltransferase [Corynebacterium efficiens YS-314] gi|23492738|dbj|BAC17710.1| putative RNA methyltransferase [Corynebacterium efficiens YS-314] Length=301 Score = 290 bits (743), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 156/271 (58%), Positives = 191/271 (71%), Gaps = 6/271 (2%) Query 18 VCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPLALFGTDRRLA 77 + DP D RLDDFRDLN D RPDLP G+ LVIAEG LV R+L SRF AL G +L Sbjct 32 ITDPADTRLDDFRDLNRSDFRPDLPGGRGLVIAEGPLVTGRLLESRFPVRALVGFRGKLD 91 Query 78 ELKDDLAGVGAPYYRASADVMARVIGFHLNRGVLAAAGRVPEPSVAQVVAGARTVAVLEG 137 + P Y + +V+A V GF ++RG+LAAA RV EP+VA V+ GARTV VLEG Sbjct 92 AFLAEHEVGDIPVYEVTREVLAEVAGFDMHRGLLAAADRVEEPTVASVLDGARTVVVLEG 151 Query 138 VNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYARAA----DWP 193 V DHEN+GS+FRNAAG+ VDA++FG GCADPLYRR VRVSMGH L +PYA A W Sbjct 152 VGDHENIGSMFRNAAGMGVDAILFGNGCADPLYRRVVRVSMGHVLRLPYAHLAGTYTTWQ 211 Query 194 TELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISDVRV 253 L L ++GF L+++TP A L +A+A E++ALLVGAEGPGLT A+R +DVR Sbjct 212 RSLTELADAGFHLVSLTPDPEAVHLEDALAG--REKVALLVGAEGPGLTEHAMRATDVRA 269 Query 254 RIPMSRGTDSLNVATAAALAFYERTRSGHHI 284 RIPM+ GTDSLN+AT+AA+AFYER RS H+ Sbjct 270 RIPMAPGTDSLNLATSAAIAFYERDRSQRHL 300 >gi|344043565|gb|EGV39254.1| hypothetical protein CgS9114_13665 [Corynebacterium glutamicum S9114] Length=276 Score = 290 bits (742), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 153/270 (57%), Positives = 189/270 (70%), Gaps = 9/270 (3%) Query 18 VCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPLALFGTDRRLA 77 + DP DPRLDD RDLN D RPDLP GK LV+AEG LVV R+L SR+ A+ G +L Sbjct 7 ISDPADPRLDDVRDLNHSDSRPDLPGGKGLVVAEGPLVVGRLLESRYPVRAIVGFKNKLD 66 Query 78 ELKDDLAGV---GAPYYRASADVMARVIGFHLNRGVLAAAGRVPEPSVAQVVAGARTVAV 134 D + G P Y S +++A V GF ++RG+LA A R E SVAQV+ ARTV V Sbjct 67 SFLDSIDASLVEGIPVYEVSRELLAEVAGFEMHRGLLATADRTEEASVAQVLENARTVVV 126 Query 135 LEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYAR----AA 190 LEGV DHEN+GS+FRNAAG+ VDA++FG GCADPLYRR VRVSMGH L +P+A Sbjct 127 LEGVGDHENIGSMFRNAAGMGVDAILFGNGCADPLYRRVVRVSMGHVLRLPFAHLEGTYT 186 Query 191 DWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISD 250 W L LKE+GF L+++TP A L +A+A +++ALLVGAEGPGLT A+R +D Sbjct 187 TWQRSLEQLKEAGFHLVSLTPDPEAEHLEDALAG--KDKVALLVGAEGPGLTEHAMRATD 244 Query 251 VRVRIPMSRGTDSLNVATAAALAFYERTRS 280 VR RIPM+ GTDSLN+AT+AA+AFYER RS Sbjct 245 VRARIPMAPGTDSLNLATSAAIAFYERDRS 274 >gi|305682031|ref|ZP_07404835.1| RNA methyltransferase, TrmH family [Corynebacterium matruchotii ATCC 14266] gi|305658504|gb|EFM48007.1| RNA methyltransferase, TrmH family [Corynebacterium matruchotii ATCC 14266] Length=285 Score = 289 bits (740), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 155/277 (56%), Positives = 195/277 (71%), Gaps = 13/277 (4%) Query 15 VQDVCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPLALFGTDR 74 + + DP DPRLDDFRDL D RPDLP GK LVIAEG L+V+R+LASR+ L G Sbjct 3 ITHISDPTDPRLDDFRDLKHSDNRPDLPGGKGLVIAEGPLIVERLLASRYPVRTLVGFPA 62 Query 75 RLAELKD-----DLAGVGAPYYRASADVMARVIGFHLNRGVLAAAGRVPEPSVAQVVAGA 129 +L + DLA G Y + +A+V G+ ++RG+LAAA R PE +++V+ A Sbjct 63 KLDKFLSQPHIADLA-AGIDTYSLDRETLAQVAGYDMHRGLLAAANRAPELGLSEVIKTA 121 Query 130 RTVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYA-- 187 TV VLEGV DHEN+GSIFRNAAGL VDA++FG GCADPLYRR+VRVSMGH L +P+A Sbjct 122 TTVVVLEGVGDHENIGSIFRNAAGLGVDAILFGNGCADPLYRRSVRVSMGHVLRLPHASF 181 Query 188 --RAADWPTELMTLKESGFRLLAMTPHGNACKLPEAI---AAVSHERIALLVGAEGPGLT 242 + +W L LKESGF+L+++TPH +A L +A+ V +E+IALLVGAEGPGLT Sbjct 182 EGKHTNWHYGLDQLKESGFQLVSLTPHEDAVPLDQALYDGNGVPYEKIALLVGAEGPGLT 241 Query 243 AAALRISDVRVRIPMSRGTDSLNVATAAALAFYERTR 279 +R +D+R RIPMS GTDSLNVATAAA+A YER R Sbjct 242 ERTMRRTDIRARIPMSAGTDSLNVATAAAIALYERQR 278 >gi|19552052|ref|NP_600054.1| rRNA methylase [Corynebacterium glutamicum ATCC 13032] gi|62389715|ref|YP_225117.1| 23S ribosomal RNA methyltransferase [Corynebacterium glutamicum ATCC 13032] gi|145294994|ref|YP_001137815.1| hypothetical protein cgR_0939 [Corynebacterium glutamicum R] gi|21323591|dbj|BAB98218.1| rRNA methylases [Corynebacterium glutamicum ATCC 13032] gi|41325050|emb|CAF19531.1| 23S RIBOSOMAL RNA METHYLTRANSFERASE [Corynebacterium glutamicum ATCC 13032] gi|140844914|dbj|BAF53913.1| hypothetical protein [Corynebacterium glutamicum R] Length=276 Score = 289 bits (739), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 153/270 (57%), Positives = 189/270 (70%), Gaps = 9/270 (3%) Query 18 VCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPLALFGTDRRLA 77 + DP DPRLDD RDLN D RPDLP GK LV+AEG LVV R+L SR+ A+ G +L Sbjct 7 ISDPADPRLDDVRDLNHSDSRPDLPGGKGLVVAEGPLVVGRLLESRYPVRAIVGFKNKLD 66 Query 78 ELKDDLAGV---GAPYYRASADVMARVIGFHLNRGVLAAAGRVPEPSVAQVVAGARTVAV 134 D + G P Y S +++A V GF ++RG+LA A R E SVAQV+ ARTV V Sbjct 67 SFLDSIDASLVEGIPVYEVSRELLAEVAGFDMHRGLLATADRTEEASVAQVLENARTVVV 126 Query 135 LEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYAR----AA 190 LEGV DHEN+GS+FRNAAG+ VDA++FG GCADPLYRR VRVSMGH L +P+A Sbjct 127 LEGVGDHENIGSMFRNAAGMGVDAILFGNGCADPLYRRVVRVSMGHVLRLPFAHLEGTYT 186 Query 191 DWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISD 250 W L LKE+GF L+++TP A L +A+A +++ALLVGAEGPGLT A+R +D Sbjct 187 TWQRSLEQLKEAGFHLVSLTPDPEAEHLEDALAG--KDKVALLVGAEGPGLTEHAMRATD 244 Query 251 VRVRIPMSRGTDSLNVATAAALAFYERTRS 280 VR RIPM+ GTDSLN+AT+AA+AFYER RS Sbjct 245 VRARIPMAPGTDSLNLATSAAIAFYERDRS 274 >gi|337290263|ref|YP_004629284.1| hypothetical protein CULC22_00652 [Corynebacterium ulcerans BR-AD22] gi|334696384|gb|AEG81181.1| hypothetical protein CULC809_00645 [Corynebacterium ulcerans 809] gi|334698569|gb|AEG83365.1| hypothetical protein CULC22_00652 [Corynebacterium ulcerans BR-AD22] Length=290 Score = 288 bits (737), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 155/287 (55%), Positives = 199/287 (70%), Gaps = 21/287 (7%) Query 10 PDGLDVQDVCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPLAL 69 P L++ + D +DPRLDDFRDLN D RPDLP GK LVIAEG LVV R++ SRF L Sbjct 7 PSALNIVHIADAEDPRLDDFRDLNHSDNRPDLPGGKGLVIAEGPLVVGRLMQSRFPVRCL 66 Query 70 FG---------TDRRLAELKDDLAGVGAPYYRASADVMARVIGFHLNRGVLAAAGRVPEP 120 G +D +AEL D+ P Y + +A V GF ++RG+LAAA RV Sbjct 67 IGFPAKLESFLSDPAMAELVRDI-----PVYSLDRETLASVAGFDMHRGLLAAADRVTGL 121 Query 121 SVAQVVAGARTVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGH 180 S+A+ ++ ARTVA+LEGV DHEN+GS+FRNAAG+ VDA++FG GCADPLYRR VRVSMGH Sbjct 122 SIAEAISEARTVAILEGVGDHENIGSMFRNAAGMGVDAILFGNGCADPLYRRVVRVSMGH 181 Query 181 ALLVPYA----RAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVS---HERIALL 233 L P+A + W EL LK++GF L+++TPH A L +A+ + ++++ALL Sbjct 182 VLRTPFAHFGGKRTTWQRELEELKDAGFHLVSLTPHPEADHLADALVDATGRPYDKVALL 241 Query 234 VGAEGPGLTAAALRISDVRVRIPMSRGTDSLNVATAAALAFYERTRS 280 VGAEGPGLT A+R +DVR RIPM+ GTDSLN+AT+AA+AFYER RS Sbjct 242 VGAEGPGLTEHAMRATDVRARIPMAPGTDSLNLATSAAIAFYERDRS 288 >gi|227487737|ref|ZP_03918053.1| rRNA methylase [Corynebacterium glucuronolyticum ATCC 51867] gi|227542376|ref|ZP_03972425.1| rRNA methylase [Corynebacterium glucuronolyticum ATCC 51866] gi|227092239|gb|EEI27551.1| rRNA methylase [Corynebacterium glucuronolyticum ATCC 51867] gi|227181574|gb|EEI62546.1| rRNA methylase [Corynebacterium glucuronolyticum ATCC 51866] Length=276 Score = 287 bits (734), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 151/269 (57%), Positives = 188/269 (70%), Gaps = 9/269 (3%) Query 18 VCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPLALFGTDRRLA 77 + DP+DPRLDD+RDLN D RPDLP GK LVIAEG LV+ R+L SRF ++ G +L Sbjct 7 IDDPNDPRLDDYRDLNHSDTRPDLPGGKGLVIAEGSLVIPRLLESRFPVRSILGFQPKLD 66 Query 78 ELKDDLAGVGA---PYYRASADVMARVIGFHLNRGVLAAAGRVPEPSVAQVVAGARTVAV 134 L L GA P Y + +V+A V GF ++RG++AAA R PE SV +VV GA T+ + Sbjct 67 SLLAALGDAGANDVPVYEVTREVLAEVAGFDMHRGLVAAADRAPEYSVGEVVDGASTLCI 126 Query 135 LEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYA----RAA 190 LEGV DHEN+GSIFRNAAGL +D V+FG GCADPLYRR VRVSMGH L +PYA + Sbjct 127 LEGVGDHENIGSIFRNAAGLGIDGVLFGAGCADPLYRRVVRVSMGHVLRLPYAHMEGKTT 186 Query 191 DWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISD 250 +W L L+E GF+++A+TP+ A L + I ++ A+LVGAEGPGLT A+R +D Sbjct 187 NWQHGLAYLQEKGFQIIALTPNPEAANLQDVIDPT--KKTAILVGAEGPGLTEHAMRATD 244 Query 251 VRVRIPMSRGTDSLNVATAAALAFYERTR 279 VR RIPM GTDSLNVATAAA+ FYE R Sbjct 245 VRARIPMQPGTDSLNVATAAAIGFYEALR 273 >gi|213966414|ref|ZP_03394592.1| 23s ribosomal rna methyltransferase [Corynebacterium amycolatum SK46] gi|213950934|gb|EEB62338.1| 23s ribosomal rna methyltransferase [Corynebacterium amycolatum SK46] Length=290 Score = 286 bits (732), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 154/272 (57%), Positives = 189/272 (70%), Gaps = 14/272 (5%) Query 18 VCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPLALFGTDRRLA 77 V DP D RLDD R+LN D RPDLP GK LVIAEG L+V R++ SRF A+FGT ++LA Sbjct 15 VDDPADSRLDDIRNLNKSDSRPDLPGGKGLVIAEGTLIVPRLVRSRFPLRAVFGTRQKLA 74 Query 78 ELKDDLAGVGA------PYYRASADVMARVIGFHLNRGVLAAAGRVPEPSVAQVVAGART 131 L D L A P++ +V+A GF L+RG+LA A R PE SV QV++GA T Sbjct 75 SLADGLTASEAAIAETVPWFELDREVLAAAAGFDLHRGLLATADRAPELSVDQVLSGATT 134 Query 132 VAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYA---- 187 +AV+EGV DHEN+G++FRNAAG+ VD VVFG CADPLYRR+VRVSMGH L VP+A Sbjct 135 LAVMEGVGDHENIGALFRNAAGMGVDGVVFGAACADPLYRRSVRVSMGHVLTVPFATLPG 194 Query 188 RAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALR 247 W L LKE GFR+++MTP G + A+ ++IA+LVGAEGPGLT A+ Sbjct 195 TTTTWQRSLDQLKEQGFRVVSMTPAGTV----DLWDAMDTDKIAILVGAEGPGLTEHAMA 250 Query 248 ISDVRVRIPMSRGTDSLNVATAAALAFYERTR 279 +DVR RIPMS GTDSLNVAT+AA+AFYER R Sbjct 251 ATDVRARIPMSPGTDSLNVATSAAIAFYERLR 282 >gi|237785055|ref|YP_002905760.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385] gi|237757967|gb|ACR17217.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385] Length=325 Score = 285 bits (730), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 159/292 (55%), Positives = 199/292 (69%), Gaps = 29/292 (9%) Query 14 DVQDVCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPLALFGTD 73 DV + DP DPRLDDFR+LN D+RPD+P GK LVIAEG+LVV R++ SRF A+ GT+ Sbjct 15 DVVYIEDPSDPRLDDFRNLNHSDKRPDMPGGKGLVIAEGLLVVPRLIRSRFPVRAIMGTE 74 Query 74 RRLAELKDD------LAGVGAPYYRASADVMARVIGFHLNRGVLAAAGRVPEPSVAQV-- 125 +L L DD LA P + S +VMA ++GF ++RG+LA+A RV PS++ V Sbjct 75 AKLHSLLDDADLAATLAQANIPVWCVSREVMAEIVGFDMHRGLLASANRVDVPSISDVLD 134 Query 126 -------------VAGARTVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRR 172 V+G T+AVLEGV DHEN+G++FRNAAGL VDAV FG GCADPLYRR Sbjct 135 ELDARRDRPDQPPVSG--TIAVLEGVGDHENIGALFRNAAGLGVDAVFFGAGCADPLYRR 192 Query 173 AVRVSMGHALLVPYA----RAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHE 228 VRVSMGH L VP+A + W L L++ G+R +A+TP +A LPEA+ + Sbjct 193 VVRVSMGHVLRVPFAYFDGNRSTWQRGLSELQQRGYRCVALTPSDDAVMLPEALDGA--Q 250 Query 229 RIALLVGAEGPGLTAAALRISDVRVRIPMSRGTDSLNVATAAALAFYERTRS 280 R AL+VGAEGPGLT A+R SDVR RIPM+ GTDSLNVATAAA+ FYER R+ Sbjct 251 RAALIVGAEGPGLTEHAMRASDVRARIPMAPGTDSLNVATAAAMGFYERART 302 >gi|134097236|ref|YP_001102897.1| putative tRNA/rRNA methyltransferase [Saccharopolyspora erythraea NRRL 2338] gi|133909859|emb|CAL99971.1| hypothetical tRNA/rRNA methyltransferase Rv0881 [Saccharopolyspora erythraea NRRL 2338] Length=287 Score = 285 bits (728), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 148/261 (57%), Positives = 190/261 (73%), Gaps = 2/261 (0%) Query 15 VQDVCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPLALFGTDR 74 + +V D +DPR+DDFRDL++ DRRPD P G+ LVIAEGV+VV+R++AS + AL G R Sbjct 24 IVEVTDVEDPRVDDFRDLSTADRRPDRPGGRGLVIAEGVVVVERLVASPYPVRALLGVRR 83 Query 75 RLAELKDDLAGVGAPYYRASADVMARVIGFHLNRGVLAAAGRVPEPSVAQVVAGARTVAV 134 R+ L D LA + P Y A DVMA V+GFHLNRGVLA A R PE + +VA +R +AV Sbjct 84 RIEALADLLAPLDVPAYVAEPDVMASVVGFHLNRGVLAVADRAPELTAEHLVATSRRLAV 143 Query 135 LEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYARAADWPT 194 LEGV DHENLG++FRNAA L VD V+ G GC+DPLYRR+VRVSMGH L VP+ R WP Sbjct 144 LEGVGDHENLGALFRNAAALGVDGVLLGEGCSDPLYRRSVRVSMGHVLRVPFTRLKSWPD 203 Query 195 ELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISDVRVR 254 +L L++ GFR+ A+TP +A L E AA+ +A+++G+EGPGLT A+ +DV VR Sbjct 204 DLDLLRDGGFRVAALTPRADAVSLRE--AALDSGPVAVVLGSEGPGLTEQAIAAADVAVR 261 Query 255 IPMSRGTDSLNVATAAALAFY 275 IPM+ G DSLNVATA A+AF+ Sbjct 262 IPMAGGVDSLNVATAGAIAFH 282 >gi|291005305|ref|ZP_06563278.1| putative tRNA/rRNA methyltransferase [Saccharopolyspora erythraea NRRL 2338] Length=270 Score = 285 bits (728), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 148/261 (57%), Positives = 190/261 (73%), Gaps = 2/261 (0%) Query 15 VQDVCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPLALFGTDR 74 + +V D +DPR+DDFRDL++ DRRPD P G+ LVIAEGV+VV+R++AS + AL G R Sbjct 7 IVEVTDVEDPRVDDFRDLSTADRRPDRPGGRGLVIAEGVVVVERLVASPYPVRALLGVRR 66 Query 75 RLAELKDDLAGVGAPYYRASADVMARVIGFHLNRGVLAAAGRVPEPSVAQVVAGARTVAV 134 R+ L D LA + P Y A DVMA V+GFHLNRGVLA A R PE + +VA +R +AV Sbjct 67 RIEALADLLAPLDVPAYVAEPDVMASVVGFHLNRGVLAVADRAPELTAEHLVATSRRLAV 126 Query 135 LEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYARAADWPT 194 LEGV DHENLG++FRNAA L VD V+ G GC+DPLYRR+VRVSMGH L VP+ R WP Sbjct 127 LEGVGDHENLGALFRNAAALGVDGVLLGEGCSDPLYRRSVRVSMGHVLRVPFTRLKSWPD 186 Query 195 ELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISDVRVR 254 +L L++ GFR+ A+TP +A L E AA+ +A+++G+EGPGLT A+ +DV VR Sbjct 187 DLDLLRDGGFRVAALTPRADAVSLRE--AALDSGPVAVVLGSEGPGLTEQAIAAADVAVR 244 Query 255 IPMSRGTDSLNVATAAALAFY 275 IPM+ G DSLNVATA A+AF+ Sbjct 245 IPMAGGVDSLNVATAGAIAFH 265 >gi|300858020|ref|YP_003783003.1| hypothetical protein cpfrc_00602 [Corynebacterium pseudotuberculosis FRC41] gi|300685474|gb|ADK28396.1| hypothetical protein cpfrc_00602 [Corynebacterium pseudotuberculosis FRC41] gi|302205744|gb|ADL10086.1| tRNA/rRNA methyltransferase, SpoU [Corynebacterium pseudotuberculosis C231] gi|302330299|gb|ADL20493.1| tRNA/rRNA methyltransferase, SpoU [Corynebacterium pseudotuberculosis 1002] gi|308275979|gb|ADO25878.1| Putative methyltransferase [Corynebacterium pseudotuberculosis I19] gi|341824414|gb|AEK91935.1| tRNA/rRNA methyltransferase, SpoU [Corynebacterium pseudotuberculosis PAT10] Length=290 Score = 282 bits (721), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 154/287 (54%), Positives = 195/287 (68%), Gaps = 21/287 (7%) Query 10 PDGLDVQDVCDPDDPRLDDFRDLNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPLAL 69 P ++ + D +D RLDDFRDLN D RPDLP GK LVIAEG LVV R+L SRF L Sbjct 7 PPAFNIVHIADAEDTRLDDFRDLNHSDNRPDLPGGKGLVIAEGPLVVGRLLQSRFPVRCL 66 Query 70 FG---------TDRRLAELKDDLAGVGAPYYRASADVMARVIGFHLNRGVLAAAGRVPEP 120 G +D +AEL D+ P Y + +A V GF ++RG+LAAA RV Sbjct 67 IGFPAKLESFLSDPAMAELVRDI-----PVYSLDRETLASVAGFDMHRGLLAAADRVAGL 121 Query 121 SVAQVVAGARTVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGH 180 S+ + V+ ARTVA+LEGV DHEN+GS+FRNAAG+ VDA++FG GCADPLYRR VRVSMGH Sbjct 122 SIEEAVSTARTVAILEGVGDHENIGSMFRNAAGMGVDAILFGNGCADPLYRRVVRVSMGH 181 Query 181 ALLVPYA----RAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVS---HERIALL 233 L P+A + W EL LK +GF L+++TPH A L +A+ + ++++ALL Sbjct 182 VLRTPFAHFGGKRTTWQRELEGLKAAGFHLVSLTPHPEAVHLADALVDATGQPYDKVALL 241 Query 234 VGAEGPGLTAAALRISDVRVRIPMSRGTDSLNVATAAALAFYERTRS 280 VGAEGPGLT A+R +DVR RIPM+ GTDSLN+AT+AA+AFYER RS Sbjct 242 VGAEGPGLTEHAMRATDVRARIPMAPGTDSLNLATSAAIAFYERDRS 288 Lambda K H 0.321 0.137 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 467727525600 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40