BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0882 Length=94 Score E Sequences producing significant alignments: (Bits) Value gi|15608022|ref|NP_215397.1| hypothetical protein Rv0882 [Mycoba... 170 7e-41 gi|340625894|ref|YP_004744346.1| putative transmembrane protein ... 168 2e-40 gi|240171956|ref|ZP_04750615.1| hypothetical protein MkanA1_2176... 134 4e-30 gi|254773896|ref|ZP_05215412.1| hypothetical protein MaviaA2_043... 131 4e-29 gi|41406919|ref|NP_959755.1| hypothetical protein MAP0821 [Mycob... 131 4e-29 gi|298524374|ref|ZP_07011783.1| conserved hypothetical protein [... 130 5e-29 gi|118468074|ref|YP_889919.1| hypothetical protein MSMEG_5686 [M... 118 4e-25 gi|148822090|ref|YP_001286844.1| hypothetical protein TBFG_10899... 115 2e-24 gi|333989448|ref|YP_004522062.1| transmembrane protein [Mycobact... 114 3e-24 gi|118616142|ref|YP_904474.1| transmembrane protein [Mycobacteri... 108 3e-22 gi|254823192|ref|ZP_05228193.1| hypothetical protein MintA_24904... 102 2e-20 gi|145222307|ref|YP_001132985.1| hypothetical protein Mflv_1716 ... 99.0 2e-19 gi|120405984|ref|YP_955813.1| hypothetical protein Mvan_5035 [My... 97.4 5e-19 gi|296169647|ref|ZP_06851265.1| transmembrane protein [Mycobacte... 97.4 6e-19 gi|342860494|ref|ZP_08717145.1| hypothetical protein MCOL_16506 ... 96.7 1e-18 gi|183984617|ref|YP_001852908.1| transmembrane protein [Mycobact... 92.0 3e-17 gi|169627981|ref|YP_001701630.1| hypothetical protein MAB_0882 [... 88.6 3e-16 gi|108801429|ref|YP_641626.1| hypothetical protein Mmcs_4466 [My... 85.9 2e-15 gi|54022619|ref|YP_116861.1| hypothetical protein nfa6520 [Nocar... 77.0 9e-13 gi|134097237|ref|YP_001102898.1| hypothetical protein SACE_0627 ... 70.5 9e-11 gi|325674568|ref|ZP_08154255.1| transmembrane protein [Rhodococc... 65.1 3e-09 gi|312138436|ref|YP_004005772.1| integral membrane protein [Rhod... 64.7 4e-09 gi|226364459|ref|YP_002782241.1| hypothetical protein ROP_50490 ... 60.8 7e-08 gi|291005303|ref|ZP_06563276.1| hypothetical protein SeryN2_1235... 58.9 3e-07 gi|333918520|ref|YP_004492101.1| hypothetical protein AS9A_0849 ... 57.4 7e-07 gi|226308107|ref|YP_002768067.1| hypothetical protein RER_46200 ... 55.8 2e-06 gi|229489209|ref|ZP_04383075.1| conserved hypothetical protein [... 53.5 9e-06 gi|331694484|ref|YP_004330723.1| hypothetical protein Psed_0607 ... 51.6 4e-05 gi|258654826|ref|YP_003203982.1| hypothetical protein Namu_4717 ... 49.3 2e-04 gi|300790279|ref|YP_003770570.1| hypothetical protein AMED_8472 ... 48.9 3e-04 gi|111021949|ref|YP_704921.1| hypothetical protein RHA1_ro04982 ... 47.4 7e-04 gi|302530536|ref|ZP_07282878.1| predicted protein [Streptomyces ... 44.3 0.005 gi|256374650|ref|YP_003098310.1| hypothetical protein Amir_0497 ... 42.0 0.033 gi|257057350|ref|YP_003135182.1| hypothetical protein Svir_33910... 40.4 0.090 gi|148264488|ref|YP_001231194.1| signal transduction histidine k... 35.0 3.5 gi|296138568|ref|YP_003645811.1| hypothetical protein Tpau_0836 ... 33.9 9.0 gi|296395225|ref|YP_003660109.1| hypothetical protein Srot_2847 ... 33.5 9.7 >gi|15608022|ref|NP_215397.1| hypothetical protein Rv0882 [Mycobacterium tuberculosis H37Rv] gi|15840296|ref|NP_335333.1| hypothetical protein MT0905 [Mycobacterium tuberculosis CDC1551] gi|31792070|ref|NP_854563.1| hypothetical protein Mb0906 [Mycobacterium bovis AF2122/97] 74 more sequence titles Length=94 Score = 170 bits (430), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 93/94 (99%), Positives = 94/94 (100%), Gaps = 0/94 (0%) Query 1 VNDQRDQAVPWATGLAVAGFVAAVIAVAVVVLSLGLIRVHPLLAVGLNIVAVSGLAPTLW 60 +NDQRDQAVPWATGLAVAGFVAAVIAVAVVVLSLGLIRVHPLLAVGLNIVAVSGLAPTLW Sbjct 1 MNDQRDQAVPWATGLAVAGFVAAVIAVAVVVLSLGLIRVHPLLAVGLNIVAVSGLAPTLW 60 Query 61 GWRRTPVLRWFVLGAAVGVAGAWLALLALTLGDG 94 GWRRTPVLRWFVLGAAVGVAGAWLALLALTLGDG Sbjct 61 GWRRTPVLRWFVLGAAVGVAGAWLALLALTLGDG 94 >gi|340625894|ref|YP_004744346.1| putative transmembrane protein [Mycobacterium canettii CIPT 140010059] gi|340004084|emb|CCC43221.1| putative transmembrane protein [Mycobacterium canettii CIPT 140010059] Length=94 Score = 168 bits (426), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 92/93 (99%), Positives = 93/93 (100%), Gaps = 0/93 (0%) Query 1 VNDQRDQAVPWATGLAVAGFVAAVIAVAVVVLSLGLIRVHPLLAVGLNIVAVSGLAPTLW 60 +NDQRDQAVPWATGLAVAGFVAAVIAVAVVVLSLGLIRVHPLLAVGLNIVAVSGLAPTLW Sbjct 1 MNDQRDQAVPWATGLAVAGFVAAVIAVAVVVLSLGLIRVHPLLAVGLNIVAVSGLAPTLW 60 Query 61 GWRRTPVLRWFVLGAAVGVAGAWLALLALTLGD 93 GWRRTPVLRWFVLGAAVGVAGAWLALLALTLGD Sbjct 61 GWRRTPVLRWFVLGAAVGVAGAWLALLALTLGD 93 >gi|240171956|ref|ZP_04750615.1| hypothetical protein MkanA1_21760 [Mycobacterium kansasii ATCC 12478] Length=98 Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 72/88 (82%), Positives = 77/88 (88%), Gaps = 0/88 (0%) Query 3 DQRDQAVPWATGLAVAGFVAAVIAVAVVVLSLGLIRVHPLLAVGLNIVAVSGLAPTLWGW 62 + RD++VPWATGL VAGFVAA V +VVLSLGLIRVH LLAVGLNIVAV GLAPTLWGW Sbjct 6 EDRDESVPWATGLVVAGFVAAATGVGMVVLSLGLIRVHALLAVGLNIVAVGGLAPTLWGW 65 Query 63 RRTPVLRWFVLGAAVGVAGAWLALLALT 90 RRTPVLRWFVLGA VGVA AWL LLA+T Sbjct 66 RRTPVLRWFVLGAGVGVAVAWLTLLAMT 93 >gi|254773896|ref|ZP_05215412.1| hypothetical protein MaviaA2_04367 [Mycobacterium avium subsp. avium ATCC 25291] Length=90 Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 69/86 (81%), Positives = 73/86 (85%), Gaps = 0/86 (0%) Query 4 QRDQAVPWATGLAVAGFVAAVIAVAVVVLSLGLIRVHPLLAVGLNIVAVSGLAPTLWGWR 63 +D+ VPWATGL V FVAAV VA+VVLSLGL+RVHPLLAVGLNIVA GLAPTLWGWR Sbjct 1 MKDETVPWATGLTVTAFVAAVTGVAIVVLSLGLVRVHPLLAVGLNIVAAGGLAPTLWGWR 60 Query 64 RTPVLRWFVLGAAVGVAGAWLALLAL 89 RTPVLRWFVLGA VGV GAWL LL L Sbjct 61 RTPVLRWFVLGAGVGVTGAWLVLLVL 86 >gi|41406919|ref|NP_959755.1| hypothetical protein MAP0821 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118466549|ref|YP_880269.1| hypothetical protein MAV_1011 [Mycobacterium avium 104] gi|41395269|gb|AAS03138.1| hypothetical protein MAP_0821 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118167836|gb|ABK68733.1| conserved hypothetical protein [Mycobacterium avium 104] gi|336461238|gb|EGO40113.1| Protein of unknown function (DUF2537) [Mycobacterium avium subsp. paratuberculosis S397] Length=99 Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 69/86 (81%), Positives = 73/86 (85%), Gaps = 0/86 (0%) Query 4 QRDQAVPWATGLAVAGFVAAVIAVAVVVLSLGLIRVHPLLAVGLNIVAVSGLAPTLWGWR 63 +D+ VPWATGL V FVAAV VA+VVLSLGL+RVHPLLAVGLNIVA GLAPTLWGWR Sbjct 10 MKDETVPWATGLTVTAFVAAVTGVAIVVLSLGLVRVHPLLAVGLNIVAAGGLAPTLWGWR 69 Query 64 RTPVLRWFVLGAAVGVAGAWLALLAL 89 RTPVLRWFVLGA VGV GAWL LL L Sbjct 70 RTPVLRWFVLGAGVGVTGAWLVLLVL 95 >gi|298524374|ref|ZP_07011783.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|298494168|gb|EFI29462.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] Length=98 Score = 130 bits (328), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 73/74 (99%), Positives = 74/74 (100%), Gaps = 0/74 (0%) Query 9 VPWATGLAVAGFVAAVIAVAVVVLSLGLIRVHPLLAVGLNIVAVSGLAPTLWGWRRTPVL 68 +PWATGLAVAGFVAAVIAVAVVVLSLGLIRVHPLLAVGLNIVAVSGLAPTLWGWRRTPVL Sbjct 1 MPWATGLAVAGFVAAVIAVAVVVLSLGLIRVHPLLAVGLNIVAVSGLAPTLWGWRRTPVL 60 Query 69 RWFVLGAAVGVAGA 82 RWFVLGAAVGVAGA Sbjct 61 RWFVLGAAVGVAGA 74 >gi|118468074|ref|YP_889919.1| hypothetical protein MSMEG_5686 [Mycobacterium smegmatis str. MC2 155] gi|118169361|gb|ABK70257.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length=91 Score = 118 bits (295), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 61/88 (70%), Positives = 72/88 (82%), Gaps = 0/88 (0%) Query 4 QRDQAVPWATGLAVAGFVAAVIAVAVVVLSLGLIRVHPLLAVGLNIVAVSGLAPTLWGWR 63 D + PW TGL VAGFVA ++A A+VVL +GLIRVHPLLA+GLN+VAV GLAPT+WGWR Sbjct 1 MTDDSTPWGTGLTVAGFVAVLLAAAIVVLGVGLIRVHPLLAIGLNMVAVGGLAPTVWGWR 60 Query 64 RTPVLRWFVLGAAVGVAGAWLALLALTL 91 PV RWFVLG+AVGV G W+ALLA+ L Sbjct 61 NRPVWRWFVLGSAVGVVGGWIALLAVAL 88 >gi|148822090|ref|YP_001286844.1| hypothetical protein TBFG_10899 [Mycobacterium tuberculosis F11] gi|148720617|gb|ABR05242.1| hypothetical transmembrane protein [Mycobacterium tuberculosis F11] Length=94 Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 77/79 (98%), Positives = 78/79 (99%), Gaps = 0/79 (0%) Query 1 VNDQRDQAVPWATGLAVAGFVAAVIAVAVVVLSLGLIRVHPLLAVGLNIVAVSGLAPTLW 60 +NDQRDQAVPWATGLAVAGFVAAVIAVAVVVLSLGLIRVHPLLAV LNIVAVSGLAPTLW Sbjct 1 MNDQRDQAVPWATGLAVAGFVAAVIAVAVVVLSLGLIRVHPLLAVCLNIVAVSGLAPTLW 60 Query 61 GWRRTPVLRWFVLGAAVGV 79 GWRRTPVLRWFVLGAAVGV Sbjct 61 GWRRTPVLRWFVLGAAVGV 79 >gi|333989448|ref|YP_004522062.1| transmembrane protein [Mycobacterium sp. JDM601] gi|333485417|gb|AEF34809.1| transmembrane protein [Mycobacterium sp. JDM601] Length=91 Score = 114 bits (286), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 63/84 (75%), Positives = 68/84 (81%), Gaps = 0/84 (0%) Query 6 DQAVPWATGLAVAGFVAAVIAVAVVVLSLGLIRVHPLLAVGLNIVAVSGLAPTLWGWRRT 65 Q PWATGL VA FVAAV A+ VLSLGLIRVH +AV LN++AV GLAPT+WGWRRT Sbjct 4 SQTTPWATGLTVAAFVAAVSGTAIAVLSLGLIRVHLAVAVVLNLIAVGGLAPTVWGWRRT 63 Query 66 PVLRWFVLGAAVGVAGAWLALLAL 89 PVLRWF LGA VGVAGAWL LLAL Sbjct 64 PVLRWFALGAGVGVAGAWLVLLAL 87 >gi|118616142|ref|YP_904474.1| transmembrane protein [Mycobacterium ulcerans Agy99] gi|118568252|gb|ABL03003.1| transmembrane protein [Mycobacterium ulcerans Agy99] Length=95 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 68/89 (77%), Positives = 75/89 (85%), Gaps = 0/89 (0%) Query 1 VNDQRDQAVPWATGLAVAGFVAAVIAVAVVVLSLGLIRVHPLLAVGLNIVAVSGLAPTLW 60 + D+R + VPWA GLAVA FVAAV+ V VLS+GLIRVHPLLAVGLNIVAV GLAP+LW Sbjct 1 MTDERGEFVPWAGGLAVAAFVAAVVGVGDAVLSIGLIRVHPLLAVGLNIVAVGGLAPSLW 60 Query 61 GWRRTPVLRWFVLGAAVGVAGAWLALLAL 89 GWR TPVLRWFVLGA VGVA AWLAL+ L Sbjct 61 GWRNTPVLRWFVLGAGVGVAVAWLALIGL 89 >gi|254823192|ref|ZP_05228193.1| hypothetical protein MintA_24904 [Mycobacterium intracellulare ATCC 13950] Length=92 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 64/81 (80%), Positives = 71/81 (88%), Gaps = 0/81 (0%) Query 4 QRDQAVPWATGLAVAGFVAAVIAVAVVVLSLGLIRVHPLLAVGLNIVAVSGLAPTLWGWR 63 +D++VPWATGL VA FVAAV A A+VVL+LGL+RVH LLAVGLNIVA GLAPTLWGWR Sbjct 1 MKDESVPWATGLTVAAFVAAVTAAAIVVLTLGLVRVHLLLAVGLNIVAAGGLAPTLWGWR 60 Query 64 RTPVLRWFVLGAAVGVAGAWL 84 RTPVLRWFVLGA VGV GAW+ Sbjct 61 RTPVLRWFVLGAGVGVTGAWV 81 >gi|145222307|ref|YP_001132985.1| hypothetical protein Mflv_1716 [Mycobacterium gilvum PYR-GCK] gi|315442741|ref|YP_004075620.1| hypothetical protein Mspyr1_11020 [Mycobacterium sp. Spyr1] gi|145214793|gb|ABP44197.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK] gi|315261044|gb|ADT97785.1| hypothetical protein Mspyr1_11020 [Mycobacterium sp. Spyr1] Length=90 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 62/84 (74%), Positives = 71/84 (85%), Gaps = 0/84 (0%) Query 6 DQAVPWATGLAVAGFVAAVIAVAVVVLSLGLIRVHPLLAVGLNIVAVSGLAPTLWGWRRT 65 + PWATGL VA VAAVIA AV+VLS+GL RVHPLLA GLN++AV GLAPT+WGWRR Sbjct 2 NDETPWATGLTVAASVAAVIATAVIVLSVGLARVHPLLAAGLNLIAVGGLAPTVWGWRRV 61 Query 66 PVLRWFVLGAAVGVAGAWLALLAL 89 PV RWFVLGA VGVAG+W+ALLA+ Sbjct 62 PVWRWFVLGAGVGVAGSWIALLAM 85 >gi|120405984|ref|YP_955813.1| hypothetical protein Mvan_5035 [Mycobacterium vanbaalenii PYR-1] gi|119958802|gb|ABM15807.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] Length=90 Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 64/84 (77%), Positives = 71/84 (85%), Gaps = 0/84 (0%) Query 6 DQAVPWATGLAVAGFVAAVIAVAVVVLSLGLIRVHPLLAVGLNIVAVSGLAPTLWGWRRT 65 PWATGL VA FVAAVIA AVVVLS+GL+RVHPLLA GLN+VAV GLAPT+WGWR+ Sbjct 2 SDETPWATGLTVAAFVAAVIATAVVVLSIGLMRVHPLLAAGLNLVAVGGLAPTVWGWRKV 61 Query 66 PVLRWFVLGAAVGVAGAWLALLAL 89 PV RWFVLGA VGVAGAW+ALL + Sbjct 62 PVWRWFVLGAGVGVAGAWVALLVI 85 >gi|296169647|ref|ZP_06851265.1| transmembrane protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895644|gb|EFG75340.1| transmembrane protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=90 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 70/87 (81%), Positives = 75/87 (87%), Gaps = 0/87 (0%) Query 6 DQAVPWATGLAVAGFVAAVIAVAVVVLSLGLIRVHPLLAVGLNIVAVSGLAPTLWGWRRT 65 D + PWATGL VAGFVAAV A+VVL+LGLIRVHPLLAV LN VA GLAPTLWGWRR Sbjct 3 DDSAPWATGLTVAGFVAAVTGAAIVVLTLGLIRVHPLLAVALNAVAAGGLAPTLWGWRRK 62 Query 66 PVLRWFVLGAAVGVAGAWLALLALTLG 92 PVLRWFVLGA +GVAGAWLALLALT+G Sbjct 63 PVLRWFVLGAGIGVAGAWLALLALTIG 89 >gi|342860494|ref|ZP_08717145.1| hypothetical protein MCOL_16506 [Mycobacterium colombiense CECT 3035] gi|342132149|gb|EGT85390.1| hypothetical protein MCOL_16506 [Mycobacterium colombiense CECT 3035] Length=77 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 51/58 (88%), Positives = 54/58 (94%), Gaps = 0/58 (0%) Query 32 LSLGLIRVHPLLAVGLNIVAVSGLAPTLWGWRRTPVLRWFVLGAAVGVAGAWLALLAL 89 LSLGL+RVH LLAVGLN+VA GLAPTLWGWRRTPVLRWFVLGAAVGVAGAW+ LLAL Sbjct 16 LSLGLVRVHALLAVGLNVVAAGGLAPTLWGWRRTPVLRWFVLGAAVGVAGAWIVLLAL 73 >gi|183984617|ref|YP_001852908.1| transmembrane protein [Mycobacterium marinum M] gi|183177943|gb|ACC43053.1| transmembrane protein [Mycobacterium marinum M] Length=95 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 61/80 (77%), Positives = 68/80 (85%), Gaps = 0/80 (0%) Query 1 VNDQRDQAVPWATGLAVAGFVAAVIAVAVVVLSLGLIRVHPLLAVGLNIVAVSGLAPTLW 60 + D+R ++VPWA GLAVA FVAAV+ V VLS+GLIRVHPLLAVGLNIVAV GLAP+LW Sbjct 1 MTDERGESVPWAAGLAVAAFVAAVVGVGDAVLSIGLIRVHPLLAVGLNIVAVGGLAPSLW 60 Query 61 GWRRTPVLRWFVLGAAVGVA 80 GWR T VLRWFVLGA VGVA Sbjct 61 GWRNTLVLRWFVLGAGVGVA 80 >gi|169627981|ref|YP_001701630.1| hypothetical protein MAB_0882 [Mycobacterium abscessus ATCC 19977] gi|169239948|emb|CAM60976.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=90 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 56/82 (69%), Positives = 61/82 (75%), Gaps = 0/82 (0%) Query 4 QRDQAVPWATGLAVAGFVAAVIAVAVVVLSLGLIRVHPLLAVGLNIVAVSGLAPTLWGWR 63 D PW G+ A VA V+AVAVVVLSLGLI VHPL A+ LNIVAV GL+PTLW WR Sbjct 1 MTDSDTPWVEGIVSAMCVAVVVAVAVVVLSLGLIHVHPLWAILLNIVAVGGLSPTLWSWR 60 Query 64 RTPVLRWFVLGAAVGVAGAWLA 85 PVLRWFVLG A+GVAG WLA Sbjct 61 DRPVLRWFVLGIAIGVAGGWLA 82 >gi|108801429|ref|YP_641626.1| hypothetical protein Mmcs_4466 [Mycobacterium sp. MCS] gi|119870582|ref|YP_940534.1| hypothetical protein Mkms_4553 [Mycobacterium sp. KMS] gi|126437414|ref|YP_001073105.1| hypothetical protein Mjls_4849 [Mycobacterium sp. JLS] gi|108771848|gb|ABG10570.1| putative transmembrane protein [Mycobacterium sp. MCS] gi|119696671|gb|ABL93744.1| putative transmembrane protein [Mycobacterium sp. KMS] gi|126237214|gb|ABO00615.1| putative transmembrane protein [Mycobacterium sp. JLS] Length=81 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 57/75 (76%), Positives = 63/75 (84%), Gaps = 0/75 (0%) Query 17 VAGFVAAVIAVAVVVLSLGLIRVHPLLAVGLNIVAVSGLAPTLWGWRRTPVLRWFVLGAA 76 +A VAAVIA AV+VLSLGL+RVHPLLAVGLN+VAV GLAPT+WGWR PV RWF GAA Sbjct 1 MAAGVAAVIATAVIVLSLGLLRVHPLLAVGLNMVAVGGLAPTVWGWRNRPVWRWFAFGAA 60 Query 77 VGVAGAWLALLALTL 91 VGVA W ALLA+TL Sbjct 61 VGVAAGWTALLAMTL 75 >gi|54022619|ref|YP_116861.1| hypothetical protein nfa6520 [Nocardia farcinica IFM 10152] gi|54014127|dbj|BAD55497.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=101 Score = 77.0 bits (188), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 43/86 (50%), Positives = 51/86 (60%), Gaps = 0/86 (0%) Query 2 NDQRDQAVPWATGLAVAGFVAAVIAVAVVVLSLGLIRVHPLLAVGLNIVAVSGLAPTLWG 61 N PWA G+ V VAA+ VAV L +VHP LAV +N++AV G APT W Sbjct 9 NPPVQDPTPWAAGITVTVLVAALATVAVYAFGAALAQVHPALAVLINLIAVGGAAPTAWR 68 Query 62 WRRTPVLRWFVLGAAVGVAGAWLALL 87 WR TPV RW +LG AVGV WL L+ Sbjct 69 WRHTPVTRWVLLGCAVGVGLGWLGLI 94 >gi|134097237|ref|YP_001102898.1| hypothetical protein SACE_0627 [Saccharopolyspora erythraea NRRL 2338] gi|133909860|emb|CAL99972.1| hypothetical protein SACE_0627 [Saccharopolyspora erythraea NRRL 2338] Length=228 Score = 70.5 bits (171), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 41/84 (49%), Positives = 55/84 (66%), Gaps = 0/84 (0%) Query 9 VPWATGLAVAGFVAAVIAVAVVVLSLGLIRVHPLLAVGLNIVAVSGLAPTLWGWRRTPVL 68 PWATGL + +AA++ V +VV++ GL V P LA+G+N+V +G AP++W RR PV Sbjct 138 TPWATGLTITAIIAAIVVVTLVVVTQGLAEVSPALAIGVNVVVAAGFAPSIWLGRRIPVW 197 Query 69 RWFVLGAAVGVAGAWLALLALTLG 92 RW G A GV AW+ALL LG Sbjct 198 RWVAFGTAAGVVLAWIALLLSALG 221 >gi|325674568|ref|ZP_08154255.1| transmembrane protein [Rhodococcus equi ATCC 33707] gi|325554154|gb|EGD23829.1| transmembrane protein [Rhodococcus equi ATCC 33707] Length=90 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 46/81 (57%), Positives = 51/81 (63%), Gaps = 0/81 (0%) Query 7 QAVPWATGLAVAGFVAAVIAVAVVVLSLGLIRVHPLLAVGLNIVAVSGLAPTLWGWRRTP 66 PWATGL V+ F A V VAVV + L VHPLL VG N+VAV G APT+W WR P Sbjct 6 DPTPWATGLLVSTFAAVVTLVAVVAFGVTLAHVHPLLTVGFNLVAVGGAAPTVWRWRNLP 65 Query 67 VLRWFVLGAAVGVAGAWLALL 87 V RW V G A GV W+ALL Sbjct 66 VWRWVVYGVAAGVVSGWIALL 86 >gi|312138436|ref|YP_004005772.1| integral membrane protein [Rhodococcus equi 103S] gi|311887775|emb|CBH47087.1| putative integral membrane protein [Rhodococcus equi 103S] Length=90 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 45/81 (56%), Positives = 51/81 (63%), Gaps = 0/81 (0%) Query 7 QAVPWATGLAVAGFVAAVIAVAVVVLSLGLIRVHPLLAVGLNIVAVSGLAPTLWGWRRTP 66 PWATGL V+ F A V VAVV + L +HPLL VG N+VAV G APT+W WR P Sbjct 6 DPTPWATGLLVSTFAAVVTLVAVVAFGVTLAHIHPLLTVGFNLVAVGGAAPTVWRWRNLP 65 Query 67 VLRWFVLGAAVGVAGAWLALL 87 V RW V G A GV W+ALL Sbjct 66 VWRWVVYGVAAGVVSGWIALL 86 >gi|226364459|ref|YP_002782241.1| hypothetical protein ROP_50490 [Rhodococcus opacus B4] gi|226242948|dbj|BAH53296.1| hypothetical membrane protein [Rhodococcus opacus B4] Length=99 Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 45/78 (58%), Positives = 55/78 (71%), Gaps = 0/78 (0%) Query 10 PWATGLAVAGFVAAVIAVAVVVLSLGLIRVHPLLAVGLNIVAVSGLAPTLWGWRRTPVLR 69 PW TGL VA F AAV+AVA++ L R++P LAV L +V V+G+AP++W RRTPV R Sbjct 18 PWFTGLLVAAFAAAVVAVAIIAFGSQLARINPALAVFLELVVVAGVAPSVWRLRRTPVWR 77 Query 70 WFVLGAAVGVAGAWLALL 87 W V GAAVGV W ALL Sbjct 78 WLVYGAAVGVLAGWCALL 95 >gi|291005303|ref|ZP_06563276.1| hypothetical protein SeryN2_12357 [Saccharopolyspora erythraea NRRL 2338] Length=75 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/69 (48%), Positives = 44/69 (64%), Gaps = 0/69 (0%) Query 25 IAVAVVVLSLGLIRVHPLLAVGLNIVAVSGLAPTLWGWRRTPVLRWFVLGAAVGVAGAWL 84 + V +VV++ GL V P LA+G+N+V +G AP++W RR PV RW G A GV AW+ Sbjct 1 MVVTLVVVTQGLAEVSPALAIGVNVVVAAGFAPSIWLGRRIPVWRWVAFGTAAGVVLAWI 60 Query 85 ALLALTLGD 93 ALL LG Sbjct 61 ALLLSALGP 69 >gi|333918520|ref|YP_004492101.1| hypothetical protein AS9A_0849 [Amycolicicoccus subflavus DQS3-9A1] gi|333480741|gb|AEF39301.1| hypothetical protein AS9A_0849 [Amycolicicoccus subflavus DQS3-9A1] Length=80 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/68 (48%), Positives = 41/68 (61%), Gaps = 0/68 (0%) Query 20 FVAAVIAVAVVVLSLGLIRVHPLLAVGLNIVAVSGLAPTLWGWRRTPVLRWFVLGAAVGV 79 F+A V+A V + GL+ +HPLLA+ LN VA G A LW WR P LR+ LG A+G Sbjct 5 FIAVVLATVVASVGTGLLSIHPLLAIALNTVAGIGFAQPLWSWRARPTLRFAALGIALGA 64 Query 80 AGAWLALL 87 WL L+ Sbjct 65 ITGWLYLI 72 >gi|226308107|ref|YP_002768067.1| hypothetical protein RER_46200 [Rhodococcus erythropolis PR4] gi|226187224|dbj|BAH35328.1| conserved hypothetical membrane protein [Rhodococcus erythropolis PR4] Length=86 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/79 (52%), Positives = 51/79 (65%), Gaps = 0/79 (0%) Query 10 PWATGLAVAGFVAAVIAVAVVVLSLGLIRVHPLLAVGLNIVAVSGLAPTLWGWRRTPVLR 69 PW TG+AV+ F A + AV + L V+ LLAV +NI+AV GLAPT+W WR PV R Sbjct 7 PWFTGIAVSVFAAMLSTSAVAAFCIALGNVNVLLAVVVNIIAVGGLAPTVWRWRAVPVWR 66 Query 70 WFVLGAAVGVAGAWLALLA 88 W V GA VGV W+A +A Sbjct 67 WVVYGAVVGVPLGWIAAIA 85 >gi|229489209|ref|ZP_04383075.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|229324713|gb|EEN90468.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length=86 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 40/83 (49%), Positives = 51/83 (62%), Gaps = 0/83 (0%) Query 6 DQAVPWATGLAVAGFVAAVIAVAVVVLSLGLIRVHPLLAVGLNIVAVSGLAPTLWGWRRT 65 PW TG+AV+ F A + AV + L V+ LLAV +N++AV GLAPT+W WR Sbjct 3 QDRTPWFTGIAVSVFAAMLSTSAVAAFCVALGNVNVLLAVVVNVIAVGGLAPTVWRWRAV 62 Query 66 PVLRWFVLGAAVGVAGAWLALLA 88 PV RW V GA VGV W+A +A Sbjct 63 PVWRWVVYGAVVGVPLGWIAAIA 85 >gi|331694484|ref|YP_004330723.1| hypothetical protein Psed_0607 [Pseudonocardia dioxanivorans CB1190] gi|326949173|gb|AEA22870.1| hypothetical protein Psed_0607 [Pseudonocardia dioxanivorans CB1190] Length=190 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 37/81 (46%), Positives = 49/81 (61%), Gaps = 0/81 (0%) Query 7 QAVPWATGLAVAGFVAAVIAVAVVVLSLGLIRVHPLLAVGLNIVAVSGLAPTLWGWRRTP 66 + PWATGL ++ F A AV VVVLS + L V +I+ +GLAP+LW RR P Sbjct 104 EPTPWATGLPISAFFAVFTAVVVVVLSTAVRDAFGALWVAADILVAAGLAPSLWLMRRVP 163 Query 67 VLRWFVLGAAVGVAGAWLALL 87 + RW +G A G+ GAW+ LL Sbjct 164 LWRWVAIGVAAGLVGAWVCLL 184 >gi|258654826|ref|YP_003203982.1| hypothetical protein Namu_4717 [Nakamurella multipartita DSM 44233] gi|258558051|gb|ACV80993.1| hypothetical protein Namu_4717 [Nakamurella multipartita DSM 44233] Length=187 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/81 (56%), Positives = 52/81 (65%), Gaps = 1/81 (1%) Query 7 QAVPWATGLAVAGFVAAVIAVAVVVLSLGLIRVHPLLAVGLNIVAVSGLAPTLWGWRRTP 66 + PWATGL +A F A + VA+ VLS GL PLLAV LN+V GL P +W R P Sbjct 105 EPTPWATGLPLAAFAAVLAGVAIWVLSAGLAD-RPLLAVVLNLVVAGGLVPAMWLSRNLP 163 Query 67 VLRWFVLGAAVGVAGAWLALL 87 VLRWF GAAVGV G W+A L Sbjct 164 VLRWFAAGAAVGVVGGWIAAL 184 >gi|300790279|ref|YP_003770570.1| hypothetical protein AMED_8472 [Amycolatopsis mediterranei U32] gi|299799793|gb|ADJ50168.1| conserved hypothetical protein [Amycolatopsis mediterranei U32] gi|340531960|gb|AEK47165.1| hypothetical protein RAM_43490 [Amycolatopsis mediterranei S699] Length=203 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 36/86 (42%), Positives = 54/86 (63%), Gaps = 1/86 (1%) Query 7 QAVPWATGLAVAGFVAAVIAVAVVVLSLGLIR-VHPLLAVGLNIVAVSGLAPTLWGWRRT 65 + PW TGL V+ F+AAV+ VA++ L+ L R LA+ +++ +G+ P+LW RRT Sbjct 118 EPTPWLTGLTVSAFIAAVVVVAMLALASTLARETSGWLALVASVIVTAGITPSLWLIRRT 177 Query 66 PVLRWFVLGAAVGVAGAWLALLALTL 91 P+LRW GAA GV AW+ +L + Sbjct 178 PILRWAAYGAAGGVVIAWIGVLVIAF 203 >gi|111021949|ref|YP_704921.1| hypothetical protein RHA1_ro04982 [Rhodococcus jostii RHA1] gi|110821479|gb|ABG96763.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=96 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 44/83 (54%), Positives = 54/83 (66%), Gaps = 0/83 (0%) Query 5 RDQAVPWATGLAVAGFVAAVIAVAVVVLSLGLIRVHPLLAVGLNIVAVSGLAPTLWGWRR 64 + PW TGL VAGF A V+AVA++ L R+H LAV L +V V+G+AP++W RR Sbjct 10 QPTGTPWFTGLLVAGFAAVVVAVAIMAFGSQLARIHLALAVVLELVVVAGVAPSVWRLRR 69 Query 65 TPVLRWFVLGAAVGVAGAWLALL 87 TPV RW V GAA GV W ALL Sbjct 70 TPVWRWLVYGAAAGVVAGWTALL 92 >gi|302530536|ref|ZP_07282878.1| predicted protein [Streptomyces sp. AA4] gi|302439431|gb|EFL11247.1| predicted protein [Streptomyces sp. AA4] Length=196 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 37/84 (45%), Positives = 54/84 (65%), Gaps = 1/84 (1%) Query 6 DQAVPWATGLAVAGFVAAVIAVAVVVLSLGLIRVHPL-LAVGLNIVAVSGLAPTLWGWRR 64 ++ PWATGL V+ F AAV+ VA++ L+ L R LA+ ++V G+AP+LW R+ Sbjct 110 EEPTPWATGLTVSAFAAAVVIVAMLALAGTLARETSTWLALIASLVVTGGVAPSLWLGRK 169 Query 65 TPVLRWFVLGAAVGVAGAWLALLA 88 P+LRW V GA G+ AW+ +LA Sbjct 170 VPILRWAVYGAGGGLVLAWIGVLA 193 >gi|256374650|ref|YP_003098310.1| hypothetical protein Amir_0497 [Actinosynnema mirum DSM 43827] gi|255918953|gb|ACU34464.1| hypothetical protein Amir_0497 [Actinosynnema mirum DSM 43827] Length=216 Score = 42.0 bits (97), Expect = 0.033, Method: Compositional matrix adjust. Identities = 33/65 (51%), Positives = 41/65 (64%), Gaps = 0/65 (0%) Query 6 DQAVPWATGLAVAGFVAAVIAVAVVVLSLGLIRVHPLLAVGLNIVAVSGLAPTLWGWRRT 65 D+ PW TGL V F AAV+AV VV LSLGL LAV N + V G++P++W R+ Sbjct 131 DEPTPWGTGLTVTVFTAAVVAVTVVSLSLGLNETSGWLAVLANALVVGGISPSVWLGRKV 190 Query 66 PVLRW 70 PV RW Sbjct 191 PVWRW 195 >gi|257057350|ref|YP_003135182.1| hypothetical protein Svir_33910 [Saccharomonospora viridis DSM 43017] gi|256587222|gb|ACU98355.1| hypothetical protein Svir_33910 [Saccharomonospora viridis DSM 43017] Length=239 Score = 40.4 bits (93), Expect = 0.090, Method: Compositional matrix adjust. Identities = 36/87 (42%), Positives = 49/87 (57%), Gaps = 1/87 (1%) Query 2 NDQRDQAVPWATGLAVAGFVAAVIAVAVVVLSLGLI-RVHPLLAVGLNIVAVSGLAPTLW 60 D+ D PW TGL VA FVA + VA++ L+ L+ +AV V GLAP+LW Sbjct 148 RDRVDPTPPWGTGLTVAAFVAVFVVVAMLALAQSLVSETTGWVAVLAAAVVTGGLAPSLW 207 Query 61 GWRRTPVLRWFVLGAAVGVAGAWLALL 87 R P++RW VLG G A +W+ +L Sbjct 208 LGRTVPIVRWIVLGTVAGTALSWIGVL 234 >gi|148264488|ref|YP_001231194.1| signal transduction histidine kinase LytS [Geobacter uraniireducens Rf4] gi|146397988|gb|ABQ26621.1| signal transduction histidine kinase, LytS [Geobacter uraniireducens Rf4] Length=367 Score = 35.0 bits (79), Expect = 3.5, Method: Composition-based stats. Identities = 21/52 (41%), Positives = 31/52 (60%), Gaps = 4/52 (7%) Query 43 LAVGLNIVAVSGLAPTLWGWRRTPVLRWFVLGAAVGVAGAWLALLALTLGDG 94 LA+G++I+ +S L L WRRT L W G+A+ + G L +L TL +G Sbjct 64 LAIGVSILLISHL---LMAWRRTSHLDWMTSGSAITM-GTGLGILLGTLANG 111 >gi|296138568|ref|YP_003645811.1| hypothetical protein Tpau_0836 [Tsukamurella paurometabola DSM 20162] gi|296026702|gb|ADG77472.1| conserved hypothetical protein [Tsukamurella paurometabola DSM 20162] Length=91 Score = 33.9 bits (76), Expect = 9.0, Method: Compositional matrix adjust. Identities = 21/52 (41%), Positives = 29/52 (56%), Gaps = 0/52 (0%) Query 32 LSLGLIRVHPLLAVGLNIVAVSGLAPTLWGWRRTPVLRWFVLGAAVGVAGAW 83 L L ++ V+ L V L + +G AP L+ +RRTPV RWF G + V W Sbjct 27 LFLAVMLVNVWLGVALLALGTAGAAPVLYLYRRTPVARWFCAGGLLAVLVVW 78 >gi|296395225|ref|YP_003660109.1| hypothetical protein Srot_2847 [Segniliparus rotundus DSM 44985] gi|296182372|gb|ADG99278.1| hypothetical protein Srot_2847 [Segniliparus rotundus DSM 44985] Length=122 Score = 33.5 bits (75), Expect = 9.7, Method: Compositional matrix adjust. Identities = 20/51 (40%), Positives = 28/51 (55%), Gaps = 0/51 (0%) Query 43 LAVGLNIVAVSGLAPTLWGWRRTPVLRWFVLGAAVGVAGAWLALLALTLGD 93 LA+ +NI +G+ P + WRR PVLRW V G+ G W ++ L D Sbjct 70 LALVVNIGVTAGVMPAMQVWRRVPVLRWLVWGSWAGAFVGWALVIVLAALD 120 Lambda K H 0.327 0.140 0.453 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 127354591080 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40