BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0883c Length=253 Score E Sequences producing significant alignments: (Bits) Value gi|15608023|ref|NP_215398.1| hypothetical protein Rv0883c [Mycob... 505 3e-141 gi|15840297|ref|NP_335334.1| hypothetical protein MT0906 [Mycoba... 503 1e-140 gi|340625895|ref|YP_004744347.1| hypothetical protein MCAN_08841... 499 1e-139 gi|183984616|ref|YP_001852907.1| hypothetical protein MMAR_4649 ... 401 4e-110 gi|118616141|ref|YP_904473.1| hypothetical protein MUL_0267 [Myc... 397 8e-109 gi|15828147|ref|NP_302410.1| hypothetical protein ML2137 [Mycoba... 395 2e-108 gi|254823191|ref|ZP_05228192.1| hypothetical protein MintA_24899... 381 5e-104 gi|342860495|ref|ZP_08717146.1| hypothetical protein MCOL_16511 ... 381 5e-104 gi|240171955|ref|ZP_04750614.1| hypothetical protein MkanA1_2175... 368 4e-100 gi|118463429|ref|YP_880270.1| hypothetical protein MAV_1010 [Myc... 366 2e-99 gi|296169648|ref|ZP_06851266.1| DNA-binding protein [Mycobacteri... 364 7e-99 gi|336461237|gb|EGO40112.1| Protein of unknown function (DUF3071... 363 1e-98 gi|41406920|ref|NP_959756.1| hypothetical protein MAP0822c [Myco... 362 4e-98 gi|145222308|ref|YP_001132986.1| hypothetical protein Mflv_1717 ... 335 4e-90 gi|118468246|ref|YP_889918.1| DNA-binding protein [Mycobacterium... 313 1e-83 gi|120405983|ref|YP_955812.1| hypothetical protein Mvan_5034 [My... 310 2e-82 gi|108801428|ref|YP_641625.1| hypothetical protein Mmcs_4465 [My... 300 1e-79 gi|333989449|ref|YP_004522063.1| hypothetical protein JDM601_080... 300 1e-79 gi|169627982|ref|YP_001701631.1| hypothetical protein MAB_0883c ... 294 1e-77 gi|226364461|ref|YP_002782243.1| hypothetical protein ROP_50510 ... 265 4e-69 gi|111021951|ref|YP_704923.1| hypothetical protein RHA1_ro04984 ... 265 5e-69 gi|226308105|ref|YP_002768065.1| hypothetical protein RER_46180 ... 249 4e-64 gi|229488863|ref|ZP_04382729.1| DNA-binding protein [Rhodococcus... 245 5e-63 gi|325674566|ref|ZP_08154253.1| DNA-binding protein [Rhodococcus... 244 6e-63 gi|312138438|ref|YP_004005774.1| hypothetical protein REQ_09850 ... 244 7e-63 gi|256374668|ref|YP_003098328.1| hypothetical protein Amir_0515 ... 234 1e-59 gi|333918521|ref|YP_004492102.1| hypothetical protein AS9A_0850 ... 233 3e-59 gi|296138577|ref|YP_003645820.1| hypothetical protein Tpau_0846 ... 231 5e-59 gi|300790276|ref|YP_003770567.1| hypothetical protein AMED_8469 ... 228 9e-58 gi|302530534|ref|ZP_07282876.1| DNA-binding protein [Streptomyce... 223 2e-56 gi|134097239|ref|YP_001102900.1| hypothetical protein SACE_0629 ... 219 3e-55 gi|291009029|ref|ZP_06567002.1| hypothetical protein SeryN2_3130... 219 4e-55 gi|54022621|ref|YP_116863.1| hypothetical protein nfa6540 [Nocar... 218 6e-55 gi|317509198|ref|ZP_07966821.1| hypothetical protein HMPREF9336_... 215 5e-54 gi|331694485|ref|YP_004330724.1| hypothetical protein Psed_0608 ... 214 8e-54 gi|296395224|ref|YP_003660108.1| hypothetical protein Srot_2846 ... 213 2e-53 gi|262201237|ref|YP_003272445.1| hypothetical protein Gbro_1257 ... 209 3e-52 gi|257057346|ref|YP_003135178.1| hypothetical protein Svir_33870... 207 1e-51 gi|343928828|ref|ZP_08768262.1| hypothetical protein GOALK_131_0... 192 5e-47 gi|325003013|ref|ZP_08124125.1| hypothetical protein PseP1_29800... 184 1e-44 gi|326384162|ref|ZP_08205844.1| hypothetical protein SCNU_14561 ... 178 7e-43 gi|319949078|ref|ZP_08023173.1| hypothetical protein ES5_06722 [... 172 4e-41 gi|227501413|ref|ZP_03931462.1| DNA-binding protein [Corynebacte... 163 2e-38 gi|306835566|ref|ZP_07468579.1| DNA-binding protein [Corynebacte... 160 1e-37 gi|258654819|ref|YP_003203975.1| hypothetical protein Namu_4710 ... 153 3e-35 gi|311740918|ref|ZP_07714745.1| DNA-binding protein [Corynebacte... 144 2e-32 gi|255324979|ref|ZP_05366086.1| DNA-binding protein [Corynebacte... 143 2e-32 gi|305681761|ref|ZP_07404565.1| conserved hypothetical protein [... 142 3e-32 gi|25027458|ref|NP_737512.1| hypothetical protein CE0902 [Coryne... 140 2e-31 gi|145294996|ref|YP_001137817.1| hypothetical protein cgR_0941 [... 138 8e-31 >gi|15608023|ref|NP_215398.1| hypothetical protein Rv0883c [Mycobacterium tuberculosis H37Rv] gi|31792071|ref|NP_854564.1| hypothetical protein Mb0907c [Mycobacterium bovis AF2122/97] gi|121636806|ref|YP_977029.1| hypothetical protein BCG_0935c [Mycobacterium bovis BCG str. Pasteur 1173P2] 78 more sequence titles Length=253 Score = 505 bits (1300), Expect = 3e-141, Method: Compositional matrix adjust. Identities = 253/253 (100%), Positives = 253/253 (100%), Gaps = 0/253 (0%) Query 1 MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDSVQPEQAQLDIEVTNVLS 60 MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDSVQPEQAQLDIEVTNVLS Sbjct 1 MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDSVQPEQAQLDIEVTNVLS 60 Query 61 PKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPAVL 120 PKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPAVL Sbjct 61 PKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPAVL 120 Query 121 TMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTPGAHGGTA 180 TMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTPGAHGGTA Sbjct 121 TMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTPGAHGGTA 180 Query 181 TAIDDTAHELINPTFNRPLRPLAPVAHLDFDEPEPAQPTLTVPSAQPVSNRRGKPAIPAW 240 TAIDDTAHELINPTFNRPLRPLAPVAHLDFDEPEPAQPTLTVPSAQPVSNRRGKPAIPAW Sbjct 181 TAIDDTAHELINPTFNRPLRPLAPVAHLDFDEPEPAQPTLTVPSAQPVSNRRGKPAIPAW 240 Query 241 EDVLLGVRSGGRR 253 EDVLLGVRSGGRR Sbjct 241 EDVLLGVRSGGRR 253 >gi|15840297|ref|NP_335334.1| hypothetical protein MT0906 [Mycobacterium tuberculosis CDC1551] gi|13880458|gb|AAK45148.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551] Length=253 Score = 503 bits (1295), Expect = 1e-140, Method: Compositional matrix adjust. Identities = 252/253 (99%), Positives = 252/253 (99%), Gaps = 0/253 (0%) Query 1 MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDSVQPEQAQLDIEVTNVLS 60 MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDSVQPEQAQLDIEVTNVLS Sbjct 1 MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDSVQPEQAQLDIEVTNVLS 60 Query 61 PKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPAVL 120 PKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPAVL Sbjct 61 PKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPAVL 120 Query 121 TMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTPGAHGGTA 180 TMQETVAAALVARG NPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTPGAHGGTA Sbjct 121 TMQETVAAALVARGXNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTPGAHGGTA 180 Query 181 TAIDDTAHELINPTFNRPLRPLAPVAHLDFDEPEPAQPTLTVPSAQPVSNRRGKPAIPAW 240 TAIDDTAHELINPTFNRPLRPLAPVAHLDFDEPEPAQPTLTVPSAQPVSNRRGKPAIPAW Sbjct 181 TAIDDTAHELINPTFNRPLRPLAPVAHLDFDEPEPAQPTLTVPSAQPVSNRRGKPAIPAW 240 Query 241 EDVLLGVRSGGRR 253 EDVLLGVRSGGRR Sbjct 241 EDVLLGVRSGGRR 253 >gi|340625895|ref|YP_004744347.1| hypothetical protein MCAN_08841 [Mycobacterium canettii CIPT 140010059] gi|340004085|emb|CCC43222.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059] Length=253 Score = 499 bits (1286), Expect = 1e-139, Method: Compositional matrix adjust. Identities = 251/253 (99%), Positives = 251/253 (99%), Gaps = 0/253 (0%) Query 1 MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDSVQPEQAQLDIEVTNVLS 60 MRELKVVGLDADGKNIICQG IPSEQFKLPVDDRLRAALRDDSV PEQAQLDIEVTNVLS Sbjct 1 MRELKVVGLDADGKNIICQGDIPSEQFKLPVDDRLRAALRDDSVPPEQAQLDIEVTNVLS 60 Query 61 PKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPAVL 120 PKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPAVL Sbjct 61 PKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPAVL 120 Query 121 TMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTPGAHGGTA 180 TMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTPGAHGGTA Sbjct 121 TMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTPGAHGGTA 180 Query 181 TAIDDTAHELINPTFNRPLRPLAPVAHLDFDEPEPAQPTLTVPSAQPVSNRRGKPAIPAW 240 TAIDDTAHELINPTFNRPLRPLAPVAHLDFDEPEPAQPTLTVPSAQPVSNRRGKPAIPAW Sbjct 181 TAIDDTAHELINPTFNRPLRPLAPVAHLDFDEPEPAQPTLTVPSAQPVSNRRGKPAIPAW 240 Query 241 EDVLLGVRSGGRR 253 EDVLLGVRSGGRR Sbjct 241 EDVLLGVRSGGRR 253 >gi|183984616|ref|YP_001852907.1| hypothetical protein MMAR_4649 [Mycobacterium marinum M] gi|183177942|gb|ACC43052.1| conserved hypothetical protein [Mycobacterium marinum M] Length=263 Score = 401 bits (1031), Expect = 4e-110, Method: Compositional matrix adjust. Identities = 201/263 (77%), Positives = 222/263 (85%), Gaps = 10/263 (3%) Query 1 MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDSVQPEQAQLDIEVTNVLS 60 MREL+VVGLDADGK I+C+G SE++KLP DDRLRAAL+ S+ PEQ QLDIEVTN+LS Sbjct 1 MRELRVVGLDADGKYILCEGVDSSEKYKLPADDRLRAALKRQSIPPEQPQLDIEVTNMLS 60 Query 61 PKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPAVL 120 PKEIQARIRAGASVEQVA ASGSDIARI+RFAHPVLLERSRAAELATAAHP+LADGPAVL Sbjct 61 PKEIQARIRAGASVEQVATASGSDIARIQRFAHPVLLERSRAAELATAAHPMLADGPAVL 120 Query 121 TMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTPGAHGGTA 180 T+ ET+ AALV RGLNP+ L WDAWRNED RWTVQLAWKAGRSDNLAHFRF PGAHGGT Sbjct 121 TLLETITAALVTRGLNPERLDWDAWRNEDGRWTVQLAWKAGRSDNLAHFRFAPGAHGGTV 180 Query 181 TAIDDTAHELINPTFNRPLRPLAPVAHLDFDEP----------EPAQPTLTVPSAQPVSN 230 TAIDD A ELI+P + PLRPLAPV+HL FDEP +PA+ T P+ QP S+ Sbjct 181 TAIDDAASELIDPEYKAPLRPLAPVSHLAFDEPAKPAKQAKPAKPAKQTPPAPAEQPASS 240 Query 231 RRGKPAIPAWEDVLLGVRSGGRR 253 RRGKPAIPAWEDVLLGVRS G+R Sbjct 241 RRGKPAIPAWEDVLLGVRSSGQR 263 >gi|118616141|ref|YP_904473.1| hypothetical protein MUL_0267 [Mycobacterium ulcerans Agy99] gi|118568251|gb|ABL03002.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99] Length=263 Score = 397 bits (1020), Expect = 8e-109, Method: Compositional matrix adjust. Identities = 200/263 (77%), Positives = 222/263 (85%), Gaps = 10/263 (3%) Query 1 MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDSVQPEQAQLDIEVTNVLS 60 MREL+VVGLDADGK I+C+G +E++KLP DDRLRAAL+ + PEQ QLDIEVTN+LS Sbjct 1 MRELRVVGLDADGKYILCEGVDSTEKYKLPADDRLRAALKRQPIPPEQPQLDIEVTNMLS 60 Query 61 PKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPAVL 120 PKEIQARIRAGASVEQVA ASGSDIARI+RFAHPVLLERSRAAELATAAHP+LADGPAVL Sbjct 61 PKEIQARIRAGASVEQVATASGSDIARIQRFAHPVLLERSRAAELATAAHPMLADGPAVL 120 Query 121 TMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTPGAHGGTA 180 T+ ET+ AALV RGLNP+ L WDAWRNED RWTVQLAWKAGRSDNLAHFRF PGAHGGT Sbjct 121 TLLETITAALVTRGLNPERLDWDAWRNEDGRWTVQLAWKAGRSDNLAHFRFAPGAHGGTV 180 Query 181 TAIDDTAHELINPTFNRPLRPLAPVAHLDFDEP-------EPAQP---TLTVPSAQPVSN 230 TAIDD A ELI+P + PLRPLAPV+HL FDEP +PA+P T P+ QP S+ Sbjct 181 TAIDDAASELIDPEYKAPLRPLAPVSHLAFDEPAKPAKQAKPAKPPKQTPPAPAEQPASS 240 Query 231 RRGKPAIPAWEDVLLGVRSGGRR 253 RRGKPAIPAWEDVLLGVRS G+R Sbjct 241 RRGKPAIPAWEDVLLGVRSSGQR 263 >gi|15828147|ref|NP_302410.1| hypothetical protein ML2137 [Mycobacterium leprae TN] gi|221230624|ref|YP_002504040.1| hypothetical protein MLBr_02137 [Mycobacterium leprae Br4923] gi|2440103|emb|CAB16676.1| hypothetical protein MLCB57.36c [Mycobacterium leprae] gi|13093701|emb|CAC31092.1| conserved hypothetical protein [Mycobacterium leprae] gi|219933731|emb|CAR72234.1| conserved hypothetical protein [Mycobacterium leprae Br4923] Length=251 Score = 395 bits (1016), Expect = 2e-108, Method: Compositional matrix adjust. Identities = 201/253 (80%), Positives = 216/253 (86%), Gaps = 2/253 (0%) Query 1 MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDSVQPEQAQLDIEVTNVLS 60 MRELKVVGLD D K I+C+G IP E+FKLP DDRLRAA+R D+ +Q QLDI+VTN+LS Sbjct 1 MRELKVVGLDPDSKTILCEGDIPGERFKLPADDRLRAAVRGDTTLLDQPQLDIQVTNMLS 60 Query 61 PKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPAVL 120 PKEIQARIRAGASVEQVA ASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPAVL Sbjct 61 PKEIQARIRAGASVEQVAMASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPAVL 120 Query 121 TMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTPGAHGGTA 180 T+ ETV+AALV RGL PD L+WDAWRNEDSRWTVQL W AGRSDNLAHF FTPGAHGGT Sbjct 121 TLLETVSAALVKRGLEPDKLSWDAWRNEDSRWTVQLMWHAGRSDNLAHFCFTPGAHGGTV 180 Query 181 TAIDDTAHELINPTFNRPLRPLAPVAHLDFDEPEPAQPTLTVPSAQPVSNRRGKPAIPAW 240 TA DD A+ELI+P FNRPLRPLA VAHLDF EPA P P Q VS+RRGKP IPAW Sbjct 181 TASDDAANELIDPDFNRPLRPLARVAHLDF--VEPATPATVTPDNQLVSSRRGKPTIPAW 238 Query 241 EDVLLGVRSGGRR 253 EDVLLGVRS G+R Sbjct 239 EDVLLGVRSAGQR 251 >gi|254823191|ref|ZP_05228192.1| hypothetical protein MintA_24899 [Mycobacterium intracellulare ATCC 13950] Length=256 Score = 381 bits (979), Expect = 5e-104, Method: Compositional matrix adjust. Identities = 194/256 (76%), Positives = 215/256 (84%), Gaps = 3/256 (1%) Query 1 MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDSVQPEQAQLDIEVTNVLS 60 MRELKVVGLDAD K +IC+ P+EQFKL DDRLRA LRD + PEQ QL+IEVTN+LS Sbjct 1 MRELKVVGLDADSKYVICESDDPAEQFKLAADDRLRAVLRDAAQHPEQPQLEIEVTNMLS 60 Query 61 PKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPAVL 120 PKEIQA+IRAGASVEQVAAASGSD++RIRRFAHPVLLER RAAELATAAHP+LADGPAVL Sbjct 61 PKEIQAKIRAGASVEQVAAASGSDVSRIRRFAHPVLLERFRAAELATAAHPMLADGPAVL 120 Query 121 TMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTPGAHGGTA 180 T+ ETV+ ALV RGL+ D L+WDAWRNED+RWTVQLAWK GRSDNLAHF FTPGAHGGT Sbjct 121 TLLETVSTALVTRGLDHDKLSWDAWRNEDNRWTVQLAWKVGRSDNLAHFCFTPGAHGGTV 180 Query 181 TAIDDTAHELINPTFNRPLRPLAPVAHLDFDEPEP---AQPTLTVPSAQPVSNRRGKPAI 237 TAIDD A LI+PTF RPLRP+A VAH+DF+EP AQ P +PV RRGKP I Sbjct 181 TAIDDAASALIDPTFERPLRPVARVAHVDFEEPAKMPVAQEPAPEPEEKPVHTRRGKPVI 240 Query 238 PAWEDVLLGVRSGGRR 253 PAWEDVLLGVRSGG+R Sbjct 241 PAWEDVLLGVRSGGQR 256 >gi|342860495|ref|ZP_08717146.1| hypothetical protein MCOL_16511 [Mycobacterium colombiense CECT 3035] gi|342132150|gb|EGT85391.1| hypothetical protein MCOL_16511 [Mycobacterium colombiense CECT 3035] Length=257 Score = 381 bits (979), Expect = 5e-104, Method: Compositional matrix adjust. Identities = 192/259 (75%), Positives = 219/259 (85%), Gaps = 8/259 (3%) Query 1 MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDSVQPEQAQLDIEVTNVLS 60 MRELKVVGLDAD K +IC+G P+EQFKL DDRLRA LRD ++ EQ QL+IEVTN+LS Sbjct 1 MRELKVVGLDADSKYVICEGDDPAEQFKLAADDRLRALLRDAALSSEQPQLEIEVTNMLS 60 Query 61 PKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPAVL 120 PKEIQA+IRAGASVEQVAAASGS+++R+RRFAHPVLLER RAAELATAAHP+L DGPAVL Sbjct 61 PKEIQAKIRAGASVEQVAAASGSEVSRVRRFAHPVLLERFRAAELATAAHPMLPDGPAVL 120 Query 121 TMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTPGAHGGTA 180 T+ ETV+AALV RGL+ D L+WDAWRNED+RWTVQLAWK GRSDNLAHF F+PGAHGGT Sbjct 121 TLLETVSAALVTRGLSHDKLSWDAWRNEDNRWTVQLAWKVGRSDNLAHFCFSPGAHGGTV 180 Query 181 TAIDDTAHELINPTFNRPLRPLAPVAHLDFDEPEPAQPTLTVPSA------QPVSNRRGK 234 TAIDD A LI+P F RPLRP+A VAH+DF+ EPA+P +T P A +PV RRGK Sbjct 181 TAIDDAASALIDPNFERPLRPVARVAHVDFE--EPAKPPVTEPEAVAEPDEKPVHTRRGK 238 Query 235 PAIPAWEDVLLGVRSGGRR 253 P IPAWEDVLLGVRSGG+R Sbjct 239 PVIPAWEDVLLGVRSGGQR 257 >gi|240171955|ref|ZP_04750614.1| hypothetical protein MkanA1_21755 [Mycobacterium kansasii ATCC 12478] Length=249 Score = 368 bits (945), Expect = 4e-100, Method: Compositional matrix adjust. Identities = 191/253 (76%), Positives = 215/253 (85%), Gaps = 4/253 (1%) Query 1 MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDSVQPEQAQLDIEVTNVLS 60 MRELK+VGLDADGK +IC+GA P+E FKLP DDRLRA L ++ P Q LD+E+TN+LS Sbjct 1 MRELKLVGLDADGKYLICEGAKPAETFKLPADDRLRAVLSGNTTHPVQPHLDMEITNMLS 60 Query 61 PKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPAVL 120 PKEIQARIRAGASVEQVAAASGSD+ARI+RFAHPVLLERSRAAELATAAHP+L+DGPAVL Sbjct 61 PKEIQARIRAGASVEQVAAASGSDLARIQRFAHPVLLERSRAAELATAAHPMLSDGPAVL 120 Query 121 TMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTPGAHGGTA 180 T+ ET+ AAL+ RGLNP+ L+WDAWRNED RWTVQLAW+AG SDNLAHFRFTPGAHGGT Sbjct 121 TLLETITAALLTRGLNPEKLSWDAWRNEDGRWTVQLAWQAGHSDNLAHFRFTPGAHGGTV 180 Query 181 TAIDDTAHELINPTFNRPLRPLAPVAHLDFDEPEPAQPTLTVPSAQPVSNRRGKPAIPAW 240 TAIDD A ELI+P F +P R LAPVAHL FDEP P + P S+RRGKPAIPAW Sbjct 181 TAIDDAASELIDPDF-KP-RQLAPVAHLAFDEPAKPAPAPA--AEPPASHRRGKPAIPAW 236 Query 241 EDVLLGVRSGGRR 253 EDVLLGVRSGG+R Sbjct 237 EDVLLGVRSGGQR 249 >gi|118463429|ref|YP_880270.1| hypothetical protein MAV_1010 [Mycobacterium avium 104] gi|254773897|ref|ZP_05215413.1| hypothetical protein MaviaA2_04372 [Mycobacterium avium subsp. avium ATCC 25291] gi|118164716|gb|ABK65613.1| conserved hypothetical protein [Mycobacterium avium 104] Length=259 Score = 366 bits (939), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 189/259 (73%), Positives = 209/259 (81%), Gaps = 6/259 (2%) Query 1 MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDSVQPEQAQLDIEVTNVLS 60 MRELKVVGLDAD K +IC+ P+EQFKLP DD LRA LR ++ PEQ QL+IEVTN+LS Sbjct 1 MRELKVVGLDADSKYLICESDDPAEQFKLPADDHLRAVLRHEAEPPEQPQLEIEVTNMLS 60 Query 61 PKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPAVL 120 PKEIQA+IRAGASVEQVAAASGSD++R+RRFAHPVLLER RAAELATAAHP+LADGPAVL Sbjct 61 PKEIQAKIRAGASVEQVAAASGSDVSRVRRFAHPVLLERYRAAELATAAHPMLADGPAVL 120 Query 121 TMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTPGAHGGTA 180 T+ ETV AA V RGL D L+WDAWRNED+RWTVQLAWK GRSDN+AHF FTPGAHGGT Sbjct 121 TLLETVTAAFVTRGLRHDKLSWDAWRNEDNRWTVQLAWKVGRSDNVAHFCFTPGAHGGTV 180 Query 181 TAIDDTAHELINPTFNRPLRPLAPVAHLDFDE------PEPAQPTLTVPSAQPVSNRRGK 234 TAIDD A LI+P F PLRPLA VAH+DFDE E P +PV RRGK Sbjct 181 TAIDDAATALIDPNFELPLRPLARVAHVDFDEPAKPPTAEAPAAEPAEPEEKPVHTRRGK 240 Query 235 PAIPAWEDVLLGVRSGGRR 253 P IPAWEDVLLGVRSGG+R Sbjct 241 PVIPAWEDVLLGVRSGGQR 259 >gi|296169648|ref|ZP_06851266.1| DNA-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895645|gb|EFG75341.1| DNA-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=259 Score = 364 bits (934), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 193/261 (74%), Positives = 219/261 (84%), Gaps = 10/261 (3%) Query 1 MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDSVQPEQAQLDIEVTNVLS 60 MRELK+VG+D+DGK+IIC+ P+E FKL VDD+L+AA+R + EQ QLDI+VTN+LS Sbjct 1 MRELKMVGVDSDGKHIICETGDPAEPFKLVVDDQLKAAVRGEMTPVEQPQLDIQVTNMLS 60 Query 61 PKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPAVL 120 PKEIQA+IRAGASVEQVAAASGSDI+R+RRFAHPVLLER+RAAELATAAHPVLADGPAVL Sbjct 61 PKEIQAKIRAGASVEQVAAASGSDISRVRRFAHPVLLERARAAELATAAHPVLADGPAVL 120 Query 121 TMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTPGAHGGTA 180 T+ ETV+AALV RGL PD L+WDAWRNEDSRWTVQLAWKAGRSDN+AHF F PGAHGGT Sbjct 121 TLLETVSAALVKRGLEPDRLSWDAWRNEDSRWTVQLAWKAGRSDNIAHFCFAPGAHGGTV 180 Query 181 TAIDDTAHELINPTFNRPLRPLAPVAHLDFDEPEPAQPTLT--------VPSAQPVSNRR 232 TAIDD A EL +P F+RPLRPLA VAH+DF+ EP +PT P QPV RR Sbjct 181 TAIDDAAKELTDPNFDRPLRPLARVAHVDFE--EPVKPTAAAAPPQEQPAPQEQPVHTRR 238 Query 233 GKPAIPAWEDVLLGVRSGGRR 253 GKP IPAWEDVLLGVRSGG+R Sbjct 239 GKPVIPAWEDVLLGVRSGGQR 259 >gi|336461237|gb|EGO40112.1| Protein of unknown function (DUF3071) [Mycobacterium avium subsp. paratuberculosis S397] Length=254 Score = 363 bits (932), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 187/254 (74%), Positives = 209/254 (83%), Gaps = 1/254 (0%) Query 1 MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDSVQPEQAQLDIEVTNVLS 60 MRELKVVGLDAD K +IC+ P+EQFKLP DD LRA LR ++ PEQ QL+IEVTN+LS Sbjct 1 MRELKVVGLDADSKYLICESDDPAEQFKLPADDHLRAVLRHEAEPPEQPQLEIEVTNMLS 60 Query 61 PKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPAVL 120 PKEIQA+IRAGASVEQVAAASGSD++R+RRFAHPVLLER RAAELATAAHP+LADGPAVL Sbjct 61 PKEIQAKIRAGASVEQVAAASGSDVSRVRRFAHPVLLERYRAAELATAAHPMLADGPAVL 120 Query 121 TMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTPGAHGGTA 180 T+ ETV AA V RGL D L+WDAWRNED+RWTVQLAWK GRSDN+AHF FTPGAHGGT Sbjct 121 TLLETVTAAFVTRGLRHDKLSWDAWRNEDNRWTVQLAWKVGRSDNVAHFCFTPGAHGGTV 180 Query 181 TAIDDTAHELINPTFNRPLRPLAPVAHLDF-DEPEPAQPTLTVPSAQPVSNRRGKPAIPA 239 TAIDD A LI+P F PLRPLA VAH+DF + +P P +PV RRGKP IPA Sbjct 181 TAIDDAATALIDPNFELPLRPLARVAHVDFEEPAKPPAAEPAEPEEKPVHTRRGKPVIPA 240 Query 240 WEDVLLGVRSGGRR 253 WEDVLLGVRSGG+R Sbjct 241 WEDVLLGVRSGGQR 254 >gi|41406920|ref|NP_959756.1| hypothetical protein MAP0822c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395270|gb|AAS03139.1| hypothetical protein MAP_0822c [Mycobacterium avium subsp. paratuberculosis K-10] Length=254 Score = 362 bits (928), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 186/254 (74%), Positives = 209/254 (83%), Gaps = 1/254 (0%) Query 1 MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDSVQPEQAQLDIEVTNVLS 60 MRELKVVGLDAD K +IC+ P+EQFKLP DD LRA LR ++ PEQ QL+IEVTN+LS Sbjct 1 MRELKVVGLDADSKYLICESDDPAEQFKLPADDHLRAVLRHEAEPPEQPQLEIEVTNMLS 60 Query 61 PKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPAVL 120 PKEIQA+IRAGASVEQVAAASGSD++R+RRFAHPVLLER RAAELATAAHP+LA+GPAVL Sbjct 61 PKEIQAKIRAGASVEQVAAASGSDVSRVRRFAHPVLLERYRAAELATAAHPMLAEGPAVL 120 Query 121 TMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTPGAHGGTA 180 T+ ETV AA V RGL D L+WDAWRNED+RWTVQLAWK GRSDN+AHF FTPGAHGGT Sbjct 121 TLLETVTAAFVTRGLRHDKLSWDAWRNEDNRWTVQLAWKVGRSDNVAHFCFTPGAHGGTV 180 Query 181 TAIDDTAHELINPTFNRPLRPLAPVAHLDF-DEPEPAQPTLTVPSAQPVSNRRGKPAIPA 239 TAIDD A LI+P F PLRPLA VAH+DF + +P P +PV RRGKP IPA Sbjct 181 TAIDDAATALIDPNFELPLRPLARVAHVDFEEPAKPPAAEPAEPEEKPVHTRRGKPVIPA 240 Query 240 WEDVLLGVRSGGRR 253 WEDVLLGVRSGG+R Sbjct 241 WEDVLLGVRSGGQR 254 >gi|145222308|ref|YP_001132986.1| hypothetical protein Mflv_1717 [Mycobacterium gilvum PYR-GCK] gi|315442742|ref|YP_004075621.1| hypothetical protein Mspyr1_11030 [Mycobacterium sp. Spyr1] gi|145214794|gb|ABP44198.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK] gi|315261045|gb|ADT97786.1| hypothetical protein Mspyr1_11030 [Mycobacterium sp. Spyr1] Length=277 Score = 335 bits (858), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 175/277 (64%), Positives = 206/277 (75%), Gaps = 24/277 (8%) Query 1 MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDSVQPEQAQLDIEVTNVLS 60 MRELKVVGLD DG IIC+ E+F L DDRL+AA+R D Q +D+EV N+L Sbjct 1 MRELKVVGLDVDGTRIICETGDSGEKFVLRADDRLKAAVRGDRAASNQTTIDVEVPNMLR 60 Query 61 PKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPAVL 120 P+EIQ++IRAGASVEQ+A+A+G DIAR+ RFAHPVLLERSRAAELATAAHPVLADGP+VL Sbjct 61 PREIQSKIRAGASVEQIASAAGVDIARVERFAHPVLLERSRAAELATAAHPVLADGPSVL 120 Query 121 TMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTPGAHGGTA 180 T+ ETV+ AL+ARGL+P++ TWDAWRNEDSRWTVQLAWKAG SDN+AHFR+ PGAHGGT Sbjct 121 TLLETVSTALIARGLDPEATTWDAWRNEDSRWTVQLAWKAGLSDNVAHFRYAPGAHGGTV 180 Query 181 TAIDDTAHELINPTFNRPLRPLAPVAHLDFDE----------------------PEP-AQ 217 TA DD A ELI+PTF RPLRPLAPVA L E PEP A+ Sbjct 181 TAFDDAASELIDPTFARPLRPLAPVAQLALGEPEPAPAPTPAPAPAPAPAPESIPEPQAE 240 Query 218 PTLTVPSAQPVSNRRGKPAIPAWEDVLLGVR-SGGRR 253 P+A+ R+ +PA+PAWEDVLLGVR SGG+R Sbjct 241 APEDTPAAKTSRPRKSRPAVPAWEDVLLGVRSSGGQR 277 >gi|118468246|ref|YP_889918.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155] gi|118169533|gb|ABK70429.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155] Length=276 Score = 313 bits (802), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 176/273 (65%), Positives = 205/273 (76%), Gaps = 22/273 (8%) Query 1 MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDSVQPEQAQLDIEVTNVLS 60 MREL+VVGLD DGK IIC+ A +E F L VDDRLRAALR D V Q ++D+EV +VL Sbjct 1 MRELRVVGLDVDGKRIICETADSAEMFTLRVDDRLRAALRGDKVASNQTEIDLEVQSVLR 60 Query 61 PKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPAVL 120 PKEIQA+IRAGASVEQ+AAA+G + R+ RFAHPVLLER+RAAELATAAHPVLADGP+VL Sbjct 61 PKEIQAKIRAGASVEQLAAAAGVPVERVERFAHPVLLERARAAELATAAHPVLADGPSVL 120 Query 121 TMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTPGAHGGTA 180 T+ ETV ALVARGL+PD++ WDAWRNEDSRWTVQLAWKAGRSDN+AHFRFTPG+HGG Sbjct 121 TLLETVTKALVARGLDPDAVAWDAWRNEDSRWTVQLAWKAGRSDNVAHFRFTPGSHGGLV 180 Query 181 TAIDDTAHELINPTFNRPLRPLAPVAHLDFDEPEPAQPTLTVPSAQPVS----------- 229 TA DD AH+LINP F RPLRP+A V L+F+ P+PAQP AQ V Sbjct 181 TASDDAAHQLINPDFARPLRPVAAVPQLEFEAPQPAQPAAPPQPAQAVPTPEPAPAPEQE 240 Query 230 -----------NRRGKPAIPAWEDVLLGVRSGG 251 +R+ + +PAWEDVLLGVRS G Sbjct 241 PEPAPAPAPKRSRKARATVPAWEDVLLGVRSSG 273 >gi|120405983|ref|YP_955812.1| hypothetical protein Mvan_5034 [Mycobacterium vanbaalenii PYR-1] gi|119958801|gb|ABM15806.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] Length=270 Score = 310 bits (793), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 169/270 (63%), Positives = 200/270 (75%), Gaps = 22/270 (8%) Query 1 MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDSVQPEQAQLDIEVTNVLS 60 MREL+VVGLD DG+ IIC+ E+F L DDRL+AA+R D Q +D+EV +L Sbjct 1 MRELRVVGLDVDGRRIICETGDSGEKFVLRSDDRLKAAVRGDRAGSNQTTIDVEVPTLLR 60 Query 61 PKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPAVL 120 P+EIQ++IRAGASVEQVAA++G DIAR+ RFAHPVLLER+RAAELA+AAHPVLADGP+VL Sbjct 61 PREIQSKIRAGASVEQVAASAGVDIARVERFAHPVLLERARAAELASAAHPVLADGPSVL 120 Query 121 TMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTPGAHGGTA 180 T+ ETV +AL+ARGL+PD WDAWRNEDSRWTVQLAWKAG SDN+AHFR+ PGAHGGT Sbjct 121 TLLETVTSALIARGLDPDGANWDAWRNEDSRWTVQLAWKAGLSDNVAHFRYAPGAHGGTV 180 Query 181 TAIDDTAHELINPTFNRPLRPLAPVAHLDFDEPE----PAQ---------------PTLT 221 TA DD A ELI+P F RPLRP+A VA L EPE P Q P T Sbjct 181 TAFDDAAAELIDPNFARPLRPVAAVAQLALGEPEDPHAPVQAATPAPEPAPVETPEPAPT 240 Query 222 VPSAQPVSNRRGKPAIPAWEDVLLGVRSGG 251 V + +P R+ +PA+PAWEDVLLGVRS G Sbjct 241 VKTPRP---RKSRPAVPAWEDVLLGVRSSG 267 >gi|108801428|ref|YP_641625.1| hypothetical protein Mmcs_4465 [Mycobacterium sp. MCS] gi|119870581|ref|YP_940533.1| hypothetical protein Mkms_4552 [Mycobacterium sp. KMS] gi|126437413|ref|YP_001073104.1| hypothetical protein Mjls_4848 [Mycobacterium sp. JLS] gi|108771847|gb|ABG10569.1| conserved hypothetical protein [Mycobacterium sp. MCS] gi|119696670|gb|ABL93743.1| conserved hypothetical protein [Mycobacterium sp. KMS] gi|126237213|gb|ABO00614.1| conserved hypothetical protein [Mycobacterium sp. JLS] Length=279 Score = 300 bits (769), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 166/280 (60%), Positives = 198/280 (71%), Gaps = 28/280 (10%) Query 1 MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDSV----QPEQAQLDIEVT 56 MRELKVV LD DG ++CQ E++ L +DDR RAA R D +Q +D+EV Sbjct 1 MRELKVVELDVDGNTVLCQ-TDSGERYTLRIDDRFRAAARGDRAAFNRSADQTMIDVEVH 59 Query 57 NVLSPKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADG 116 NVL P++IQ++IRAGASVEQVA ASG I R+ RFAHPVLLERSRAAELATAAHPVL+DG Sbjct 60 NVLRPRDIQSKIRAGASVEQVANASGMPIERVERFAHPVLLERSRAAELATAAHPVLSDG 119 Query 117 PAVLTMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTPGAH 176 PAVLT+ ETV+ ALVARGL+PD+ WDAWRNED RWTVQ+AWKAGRSDN+AHFRF+PGAH Sbjct 120 PAVLTLLETVSTALVARGLDPDATNWDAWRNEDGRWTVQVAWKAGRSDNVAHFRFSPGAH 179 Query 177 GGTATAIDDTAHELINPTFNRPLRPLAPVAHLDFD--------------------EPEPA 216 GGT TA D+ AH+LI+P F+RPLRP+AP+A LDFD Sbjct 180 GGTVTAFDEAAHQLIDPDFSRPLRPVAPLAQLDFDAPVAAPPAPAPLPEPEPEPEPAPEP 239 Query 217 QPTLTVPSAQPVSNRRGK--PAIPAWEDVLLGVR-SGGRR 253 + +P R+GK P +P WEDVLLGVR SGG+R Sbjct 240 AAGPEPEAPKPAKPRKGKARPTVPGWEDVLLGVRSSGGQR 279 >gi|333989449|ref|YP_004522063.1| hypothetical protein JDM601_0808 [Mycobacterium sp. JDM601] gi|333485416|gb|AEF34808.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=258 Score = 300 bits (768), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 161/259 (63%), Positives = 199/259 (77%), Gaps = 7/259 (2%) Query 1 MRELKVVGLDADGKNIICQGA----IPSEQFKLPVDDRLRAALRDDSVQPEQAQLDIEVT 56 MREL+ +GLDADGK+IIC+ +E F++ +DDRLR A+R ++ + Q Q+D+ ++ Sbjct 1 MRELRAIGLDADGKHIICESVGDDDDSTEMFRVRIDDRLRGAVRGEASRVGQTQIDLGIS 60 Query 57 NVLSPKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADG 116 +L PK+IQARIRAGASVEQVAAA+G D++R+ RFAHPVLLERSRAAELA AAHPVLADG Sbjct 61 -MLRPKDIQARIRAGASVEQVAAAAGVDVSRVERFAHPVLLERSRAAELAAAAHPVLADG 119 Query 117 PAVLTMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTPGAH 176 PAV T+ E V +AL++RGLNPD +WDAWRN+D RWTVQLAWKAGRSDN+AHF F PGAH Sbjct 120 PAVPTLLEVVTSALMSRGLNPDQSSWDAWRNDDGRWTVQLAWKAGRSDNVAHFWFAPGAH 179 Query 177 GGTATAIDDTAHELINPTFNRPLRPLAPVAHLDF-DEPEPAQPTLTVPSAQPVSN-RRGK 234 GGT TA+DD A ELI+P F+R LRP+A VA LDF + +P + RR K Sbjct 180 GGTVTALDDPAMELIDPDFDRQLRPVAAVAQLDFEEPAAAPATEEAPAPPRPTARARRSK 239 Query 235 PAIPAWEDVLLGVRSGGRR 253 PA+P WEDVLLGVRS G+R Sbjct 240 PAVPGWEDVLLGVRSSGQR 258 >gi|169627982|ref|YP_001701631.1| hypothetical protein MAB_0883c [Mycobacterium abscessus ATCC 19977] gi|169239949|emb|CAM60977.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=270 Score = 294 bits (752), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 154/271 (57%), Positives = 191/271 (71%), Gaps = 21/271 (7%) Query 1 MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDSVQPEQAQLDIEVTNVLS 60 MRELKV+GL ADGK +ICQ A +++F + DDRLRAA R D + Q Q+++E + L Sbjct 1 MRELKVIGLSADGKRVICQDANGTDKFAIDADDRLRAAARGDLSRLGQIQIEMESS--LR 58 Query 61 PKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPAVL 120 P+EIQARIRAGA+V+QVA A+G D++RI RFAHPVLLER RAAE+A+AAHPV DGPAV Sbjct 59 PREIQARIRAGATVQQVATAAGVDVSRIERFAHPVLLERQRAAEMASAAHPVRNDGPAVS 118 Query 121 TMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTPGAHGGTA 180 T+ +TVA A+ ARG +PD++ WDAW+ ED RWTVQL W+ GRSDN AHFR+TPGAHGGT Sbjct 119 TLADTVAGAMFARGGDPDAIEWDAWKVEDGRWTVQLQWRTGRSDNKAHFRYTPGAHGGTV 178 Query 181 TAIDDTAHELINPTFNRPLRPLAPVA-------HLDFDEPEPAQPTLTVPSAQ------- 226 TA+DD+A ELI+PTF R LRP+A V+ F E P A+ Sbjct 179 TALDDSARELIDPTFTRSLRPVAAVSPLLPEPEPELFTESPAPLPEPEPAVAEEHTETET 238 Query 227 -----PVSNRRGKPAIPAWEDVLLGVRSGGR 252 P +RR KPA+P WEDVLLGVRS G+ Sbjct 239 TQAPAPRRSRRSKPAVPTWEDVLLGVRSSGQ 269 >gi|226364461|ref|YP_002782243.1| hypothetical protein ROP_50510 [Rhodococcus opacus B4] gi|226242950|dbj|BAH53298.1| hypothetical protein [Rhodococcus opacus B4] Length=285 Score = 265 bits (678), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 145/287 (51%), Positives = 188/287 (66%), Gaps = 37/287 (12%) Query 1 MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDSVQPEQAQLDIEVTNVLS 60 MREL+V+GL+ DG +++C A E+F+LP DD+LRAA R D + Q++IE+ + L Sbjct 1 MRELRVIGLEPDGSHVVCADASTGEKFRLPADDKLRAASRGDIAR--LGQIEIEMDSQLR 58 Query 61 PKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPAVL 120 P+EIQARIRAGASVEQVA +G +A++ RFA+PVLLERSRAAE+A HPV +GPAV Sbjct 59 PREIQARIRAGASVEQVADEAGIPLAKVERFAYPVLLERSRAAEMAQGGHPVRDNGPAVP 118 Query 121 TMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTPGAHGGTA 180 T+ E V A ARG N D TWDAWR+ED+ W QL W+AGR+ N AH+R+ P AHGGT Sbjct 119 TLAEIVTQAFRARGHNIDDATWDAWRDEDNHWVAQLQWQAGRTTNAAHWRYQPDAHGGTI 178 Query 181 TAIDDTAHELINPTFNRPLRPLAPVAHLDFDEPEPAQ-------PTLT------------ 221 A+DDTA +LI+P F RPLR LAPVA + ++ E A+ PT+ Sbjct 179 VALDDTAFDLIDPDFGRPLRGLAPVASEEPEQLELAEFPTEVEVPTIEPEEIIEADVTEE 238 Query 222 -----VPSAQPVS-----------NRRGKPAIPAWEDVLLGVRSGGR 252 PS +P S ++RGKPA+P+W+DVLLGVRS GR Sbjct 239 PEDEPAPSEEPSSPKIAPHQTNNKDKRGKPALPSWDDVLLGVRSSGR 285 >gi|111021951|ref|YP_704923.1| hypothetical protein RHA1_ro04984 [Rhodococcus jostii RHA1] gi|110821481|gb|ABG96765.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=285 Score = 265 bits (677), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 146/290 (51%), Positives = 187/290 (65%), Gaps = 43/290 (14%) Query 1 MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDSVQPEQAQLDIEVTNVLS 60 MREL+V+GL+ DG +++C A E+F+LP DD+LRAA R D + Q++IE+ + L Sbjct 1 MRELRVIGLEPDGSHVVCADASTGEKFRLPADDKLRAASRGDIAR--LGQIEIEMDSQLR 58 Query 61 PKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPAVL 120 P+EIQARIRAGASVEQVA +G +A++ RFA+PVLLERSRAAE+A HPV +GPAV Sbjct 59 PREIQARIRAGASVEQVADEAGIPLAKVERFAYPVLLERSRAAEMAQGGHPVRDNGPAVP 118 Query 121 TMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTPGAHGGTA 180 T+ E V A ARG N D TWDAWR+ED+ W QL W+AGR+ N AH+R+ P AHGGT Sbjct 119 TLAEIVTQAFRARGHNIDDATWDAWRDEDNHWVAQLQWQAGRTTNAAHWRYQPDAHGGTI 178 Query 181 TAIDDTAHELINPTFNRPLRPLAPVAHLDFDEPEPAQ----------PTLT--------- 221 A+DDTA +LI+P F RPLR LAPVA DEPE + PT+ Sbjct 179 VALDDTAFDLIDPDFGRPLRGLAPVAS---DEPEQLELAEFPTEVEVPTIEPEEIIEADV 235 Query 222 --------VPSAQPVS-----------NRRGKPAIPAWEDVLLGVRSGGR 252 PS +P + ++RGKPA+P+W+DVLLGVRS GR Sbjct 236 TEEPEDEPAPSEEPAAPKIAPHQTNNKDKRGKPALPSWDDVLLGVRSSGR 285 >gi|226308105|ref|YP_002768065.1| hypothetical protein RER_46180 [Rhodococcus erythropolis PR4] gi|226187222|dbj|BAH35326.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] Length=301 Score = 249 bits (635), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 138/303 (46%), Positives = 182/303 (61%), Gaps = 53/303 (17%) Query 1 MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDSVQPEQAQLDIEVTNVLS 60 MREL+V+GL+ DG +++C A ++F+LP DD+LRAA R D + Q++IE+ + L Sbjct 1 MRELRVIGLEPDGSHVVCADAETGQKFRLPADDKLRAASRGDVAR--LGQIEIEMESQLR 58 Query 61 PKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPAVL 120 P+EIQARIR+GASVEQVA + I+++ RFA+PVLLERSRAAE+A HPV +GP V Sbjct 59 PREIQARIRSGASVEQVAEEAKIPISKVERFAYPVLLERSRAAEMAQGGHPVRDNGPTVP 118 Query 121 TMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTPGAHGGTA 180 T+ E V A ARG + D TWDAWR+ED++W QL W+AGR+ N AH+R+ P AHGGT Sbjct 119 TLSEIVTHAFRARGHSIDEATWDAWRDEDNQWVAQLQWQAGRTTNAAHWRYQPDAHGGTI 178 Query 181 TAIDDTAHELINPTFNRPLRPLAPVAHLD--------FD-------EPEPA--------- 216 A+DD A +LI+P F RPLR L PV + FD EPEPA Sbjct 179 VALDDAAFDLIDPDFGRPLRGLVPVVSNEPQQLELSRFDVEPVAEIEPEPAAVSERTVVA 238 Query 217 -----------QPTL----------------TVPSAQPVSNRRGKPAIPAWEDVLLGVRS 249 +P T P ++RG+PA+P+W+DVLLGVRS Sbjct 239 ERIVTPEPIAVEPETVVAEEVPEPAPDVTPKTAPQQTQTKDKRGRPALPSWDDVLLGVRS 298 Query 250 GGR 252 GR Sbjct 299 SGR 301 >gi|229488863|ref|ZP_04382729.1| DNA-binding protein [Rhodococcus erythropolis SK121] gi|229324367|gb|EEN90122.1| DNA-binding protein [Rhodococcus erythropolis SK121] Length=313 Score = 245 bits (625), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 139/315 (45%), Positives = 182/315 (58%), Gaps = 65/315 (20%) Query 1 MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDSVQPEQAQLDIEVTNVLS 60 MREL+V+GL+ DG +++C A ++F+LP DD+LRAA R D + Q++IE+ + L Sbjct 1 MRELRVIGLEPDGSHVVCADAETGQKFRLPADDKLRAASRGDVAR--LGQIEIEMESQLR 58 Query 61 PKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPAVL 120 P+EIQARIR+GASVEQVA + I+++ RFA+PVLLERSRAAE+A HPV +GP V Sbjct 59 PREIQARIRSGASVEQVAEEAKIPISKVERFAYPVLLERSRAAEMAQGGHPVRDNGPTVP 118 Query 121 TMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTPGAHGGTA 180 T+ E V A ARG + D TWDAWR+ED++W QL W+AGR+ N AH+R+ P AHGGT Sbjct 119 TLSEIVTHAFRARGHSIDEATWDAWRDEDNQWVAQLQWQAGRTTNAAHWRYQPDAHGGTI 178 Query 181 TAIDDTAHELINPTFNRPLRPLAPVAHLD--------FD-------EPEPAQ-------- 217 A+DD A +LI+P F RPLR L PV + FD EPEPA Sbjct 179 VALDDAAFDLIDPDFGRPLRGLVPVVSNEPEQLELSRFDVEPVAEIEPEPAAVSERTAVS 238 Query 218 -----PTLTV-----------------------------------PSAQPVSNRRGKPAI 237 P TV P ++RG+PA+ Sbjct 239 ERTVVPERTVVAERIVAPEPIAVEPETVVTEEVPEPAPDVTPKTAPQQTQTKDKRGRPAL 298 Query 238 PAWEDVLLGVRSGGR 252 P+W+DVLLGVRS GR Sbjct 299 PSWDDVLLGVRSSGR 313 >gi|325674566|ref|ZP_08154253.1| DNA-binding protein [Rhodococcus equi ATCC 33707] gi|325554152|gb|EGD23827.1| DNA-binding protein [Rhodococcus equi ATCC 33707] Length=294 Score = 244 bits (624), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 137/292 (47%), Positives = 180/292 (62%), Gaps = 44/292 (15%) Query 1 MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDSVQPEQAQLDIEVTNVLS 60 +REL+V+GL+ G +++C E+F+LP DD+LRAA R D + Q++IE+ + L Sbjct 6 VRELRVIGLEPGGAHVVCSDPDTGEKFRLPADDKLRAASRGDIAR--LGQIEIEMDSQLR 63 Query 61 PKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPAVL 120 P+EIQARIRAGASVEQVA +G A++ RFA+PVLLER+RAAE+A A HPV DGPAV Sbjct 64 PREIQARIRAGASVEQVAEQAGIPHAKVERFAYPVLLERARAAEMAQAGHPVRPDGPAVH 123 Query 121 TMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTPGAHGGTA 180 T+ E V A ARG ++TWDAW++ED W QL W+AGR+ N AH+R+ P AHGGT Sbjct 124 TLSEIVTLAFKARGHENSAITWDAWKDEDGFWVAQLQWQAGRTTNTAHWRYQPDAHGGTI 183 Query 181 TAIDDTAHELINPTFNRPLRPLAPV------AHLDFD---EPEPAQPT------------ 219 TA+DDTA +L++P F R R LAPV DF+ E E A+P+ Sbjct 184 TALDDTAAQLVDPDFGR--RGLAPVPTNPIYGPADFEQDHEHESAEPSDKAQDSPIVLAD 241 Query 220 -------------------LTVPSAQPVSNRRGKPAIPAWEDVLLGVRSGGR 252 P P ++RGKPA+P+W+DVLLGVRS GR Sbjct 242 NESHAPASEVTGEIEHDQPKVAPQQTPGKDKRGKPALPSWDDVLLGVRSNGR 293 >gi|312138438|ref|YP_004005774.1| hypothetical protein REQ_09850 [Rhodococcus equi 103S] gi|311887777|emb|CBH47089.1| conserved hypothetical protein [Rhodococcus equi 103S] Length=294 Score = 244 bits (624), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 137/292 (47%), Positives = 180/292 (62%), Gaps = 44/292 (15%) Query 1 MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDSVQPEQAQLDIEVTNVLS 60 +REL+V+GL+ G +++C E+F+LP DD+LRAA R D + Q++IE+ + L Sbjct 6 VRELRVIGLEPGGAHVVCSDPDTGEKFRLPADDKLRAASRGDIAR--LGQIEIEMDSQLR 63 Query 61 PKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPAVL 120 P+EIQARIRAGASVEQVA +G A++ RFA+PVLLER+RAAE+A A HPV DGPAV Sbjct 64 PREIQARIRAGASVEQVAEQAGIPHAKVERFAYPVLLERARAAEMAQAGHPVRPDGPAVH 123 Query 121 TMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTPGAHGGTA 180 T+ E V A ARG ++TWDAW++ED W QL W+AGR+ N AH+R+ P AHGGT Sbjct 124 TLSEIVTLAFKARGHENSAITWDAWKDEDGFWVAQLQWQAGRTTNTAHWRYQPDAHGGTI 183 Query 181 TAIDDTAHELINPTFNRPLRPLAPV------AHLDFD---EPEPAQPT------------ 219 TA+DDTA +L++P F R R LAPV DF+ E E A+P+ Sbjct 184 TALDDTAAQLVDPDFGR--RGLAPVPTNPIYGPADFEQDHEHESAEPSDKAQDTPIVLAD 241 Query 220 -------------------LTVPSAQPVSNRRGKPAIPAWEDVLLGVRSGGR 252 P P ++RGKPA+P+W+DVLLGVRS GR Sbjct 242 NDSHAPASEVTGEIEHDQPKVAPQQTPGKDKRGKPALPSWDDVLLGVRSNGR 293 >gi|256374668|ref|YP_003098328.1| hypothetical protein Amir_0515 [Actinosynnema mirum DSM 43827] gi|255918971|gb|ACU34482.1| hypothetical protein Amir_0515 [Actinosynnema mirum DSM 43827] Length=271 Score = 234 bits (596), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 133/274 (49%), Positives = 170/274 (63%), Gaps = 26/274 (9%) Query 1 MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDSVQPEQAQLDIEVTNVLS 60 MR L+VVGLD DGK+I+ + E+F LP D+RLRAA R D + Q+++E + + Sbjct 1 MRTLRVVGLDEDGKSIVLEDPERGERFVLPADERLRAAARGDLTR--LGQIEVETESQMR 58 Query 61 PKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPAVL 120 P+EIQARIRAG SV+QVAA +G R+ RFA+PVLLERSR A+LA AHPV DGP V Sbjct 59 PREIQARIRAGESVDQVAAIAGIPAHRVERFAYPVLLERSRIADLAQRAHPVREDGPDVQ 118 Query 121 TMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTPGAHGGTA 180 T+ E VA + RG ++WD+WR ED RW VQL W AGRSDN AH+ F PGAHGGT Sbjct 119 TLGEVVAHSFGLRGQEYVDVSWDSWRGEDGRWVVQLHWTAGRSDNRAHWAFHPGAHGGTV 178 Query 181 TAIDDTAHELINPTFNRPLRPLAPVAH-----LDFDEPEPAQPTLTVPSAQPV------- 228 TA+DD A +L++P NR +R L V H LD + A+P + V +PV Sbjct 179 TALDDAAVDLMDPNPNR-VRSLRAVTHLARAALDVEGRPLAEPEILVREERPVVEEPIVV 237 Query 229 -----------SNRRGKPAIPAWEDVLLGVRSGG 251 ++ P +P+WEDVLLGVRS G Sbjct 238 DGELAEDQPSAKRKKNHPIVPSWEDVLLGVRSRG 271 >gi|333918521|ref|YP_004492102.1| hypothetical protein AS9A_0850 [Amycolicicoccus subflavus DQS3-9A1] gi|333480742|gb|AEF39302.1| hypothetical protein AS9A_0850 [Amycolicicoccus subflavus DQS3-9A1] Length=273 Score = 233 bits (593), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 125/272 (46%), Positives = 166/272 (62%), Gaps = 24/272 (8%) Query 1 MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDSVQPEQAQLDIEVTNVLS 60 MRELKVVG+++DG IIC +FK+ DDRLRAA D + Q+++E+ + L Sbjct 1 MRELKVVGIESDGSAIICADVNTGAKFKIAADDRLRAASHGDLSR--LGQIEVEMESRLR 58 Query 61 PKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPAVL 120 P+EIQAR+RAGASV ++A SG +AR+ FAHPVLLER+R A++A AHP+L DGPA+ Sbjct 59 PREIQARVRAGASVREIAETSGLPMARVESFAHPVLLERARMAQMAQHAHPLLEDGPALQ 118 Query 121 TMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTPGAHGGTA 180 T+ VA RG N D WDAWRN++ RW VQL+W AGR++N AH+RF PGA GGTA Sbjct 119 TLSTAVAQTFGTRGQNIDEAQWDAWRNDEGRWVVQLSWAAGRTENKAHWRFQPGADGGTA 178 Query 181 TAIDDTAHELINPTFNRPLRPLAPVAHL----------------------DFDEPEPAQP 218 A+DD A EL++ RP L+PV + + + E P Sbjct 179 AALDDAAKELVSTDMPRPRPALSPVTPIVTAKPPAKPAAAPAQPETTPAPEPPKAEKTTP 238 Query 219 TLTVPSAQPVSNRRGKPAIPAWEDVLLGVRSG 250 P Q + + KP +P+WEDVLLGVR+G Sbjct 239 PEPEPKQQAPTGGKKKPPMPSWEDVLLGVRTG 270 >gi|296138577|ref|YP_003645820.1| hypothetical protein Tpau_0846 [Tsukamurella paurometabola DSM 20162] gi|296026711|gb|ADG77481.1| conserved hypothetical protein [Tsukamurella paurometabola DSM 20162] Length=267 Score = 231 bits (590), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 132/269 (50%), Positives = 176/269 (66%), Gaps = 24/269 (8%) Query 1 MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDSVQPEQAQLDIEVTNVLS 60 M+EL+VV LD DG +++C+G P+ +F LP+DD LRAA+ + + AQ ++E+ LS Sbjct 1 MQELRVVALDDDGTSLVCEG--PAGRFHLPIDDTLRAAVAGELTR--GAQTELELGADLS 56 Query 61 PKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPAVL 120 P++IQARIRAGASVE+VAA +G+ + RI+RFA+PVLLER+RAAELA AHPV DGP Sbjct 57 PRDIQARIRAGASVEEVAALAGAPVHRIKRFANPVLLERARAAELAQLAHPVRGDGPMHT 116 Query 121 TMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTPGAHGGTA 180 + + V ALV RG + D+ WDAW+ ++RW V++AW G+S N AH++F PGAHGGTA Sbjct 117 ALADVVRGALVERG-HTDTTEWDAWKGPENRWVVRIAWTVGKSRNEAHYKFAPGAHGGTA 175 Query 181 TAIDDTAHELINPTFNRPLRPL---APVAHLDFDE-------------PEPAQPTLTVPS 224 T ID+TA EL++P R LR + PV LD DE PE + P Sbjct 176 TPIDETARELLDPDARRALRSIERSTPVDDLDVDEPLRAVGGDAPRRAPEAPRRAPEAPR 235 Query 225 AQPVSNR---RGKPAIPAWEDVLLGVRSG 250 P + R R P +P+WEDVLLGVR G Sbjct 236 QAPEAPRDHDRRHPEMPSWEDVLLGVRGG 264 >gi|300790276|ref|YP_003770567.1| hypothetical protein AMED_8469 [Amycolatopsis mediterranei U32] gi|299799790|gb|ADJ50165.1| conserved hypothetical protein [Amycolatopsis mediterranei U32] gi|340531957|gb|AEK47162.1| hypothetical protein RAM_43475 [Amycolatopsis mediterranei S699] Length=281 Score = 228 bits (580), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 129/280 (47%), Positives = 169/280 (61%), Gaps = 33/280 (11%) Query 1 MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDSVQPEQAQLDIEVTNVLS 60 MR L+VVGL DGK+I+ + +F LP D+RLRAA R D + Q++IE+ + + Sbjct 1 MRALRVVGLHEDGKSIVLEDPASRTRFLLPADERLRAAARGDITR--LGQIEIELESQMR 58 Query 61 PKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPAVL 120 P+EIQ RIRAG SVEQVAA++G R+ R+A+PVLLERSR AELA +AHPV DGP V Sbjct 59 PREIQQRIRAGESVEQVAASAGVSTQRVERYAYPVLLERSRTAELAQSAHPVREDGPDVQ 118 Query 121 TMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTPGAHGGTA 180 T+ E VA + RG + TWD+W+ +D RW V L WKAGRSDN AH+ F+PGAHGGT Sbjct 119 TLGEVVAYSFGVRGHDYSQATWDSWKGDDGRWVVVLRWKAGRSDNRAHWAFSPGAHGGTV 178 Query 181 TAIDDTAHELINPTFN---RPLRPLAPVAHLDFD----------------EPEPAQPTLT 221 TA+D+ A L++P R +R LAP +F EP+P T Sbjct 179 TALDENAEVLLDPNAYRAPRTVRALAPARETEFQPTLDSVAPERAELPSAEPDPDDDTRE 238 Query 222 VPS--AQPVSN----------RRGKPAIPAWEDVLLGVRS 249 +P A P + ++ P +P+WEDVLLGVRS Sbjct 239 IPRVPADPDEDAAVPEPRPKAKKNHPIVPSWEDVLLGVRS 278 >gi|302530534|ref|ZP_07282876.1| DNA-binding protein [Streptomyces sp. AA4] gi|302439429|gb|EFL11245.1| DNA-binding protein [Streptomyces sp. AA4] Length=278 Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 129/277 (47%), Positives = 172/277 (63%), Gaps = 30/277 (10%) Query 1 MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDSVQPEQAQLDIEVTNVLS 60 MR L+VVGL DGK+++ + +F LP D+RLRAA R D + Q++IE+ + + Sbjct 1 MRALRVVGLHEDGKSLVLEDPASRTRFLLPADERLRAAARGDIAR--LGQIEIELESQMR 58 Query 61 PKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPAVL 120 P+EIQARIRAG SVEQVA+++G R+ RFA+PVLLERSR AELA +AHPV DGP V Sbjct 59 PREIQARIRAGESVEQVASSAGVSTQRVERFAYPVLLERSRTAELAQSAHPVREDGPDVQ 118 Query 121 TMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTPGAHGGTA 180 T+ E +A A RG + + WDAWR +D +W V L WKAGRSDN AH+ F+PGAHGGT Sbjct 119 TLGEVIAYAFGVRGHDYNQAAWDAWRGDDGKWVVVLRWKAGRSDNRAHWSFSPGAHGGTV 178 Query 181 TAIDDTAHELINPTFN---RPLRPLAPVAH------LD-FDEP-------EPAQPTLTVP 223 A+D+ A L+NP R +R LAP LD +EP + A+ T +P Sbjct 179 HALDENAEVLLNPNSYVAPRTVRALAPARDSVVQPTLDAVEEPRAIEGPDDGAEETREIP 238 Query 224 ----------SAQPVSN-RRGKPAIPAWEDVLLGVRS 249 + QP + ++ P +P+WEDVLLGVR+ Sbjct 239 HVPGESDGDDAEQPRTKAKKNHPIVPSWEDVLLGVRT 275 >gi|134097239|ref|YP_001102900.1| hypothetical protein SACE_0629 [Saccharopolyspora erythraea NRRL 2338] gi|133909862|emb|CAL99974.1| hypothetical protein SACE_0629 [Saccharopolyspora erythraea NRRL 2338] Length=318 Score = 219 bits (558), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 117/236 (50%), Positives = 154/236 (66%), Gaps = 13/236 (5%) Query 1 MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDSVQPEQAQLDIEVTNVLS 60 MR L+VVGLD DG+ +IC+ ++F +P D+RLRAA R D + Q Q+++E + Sbjct 1 MRALRVVGLDEDGETVICEDPENGDRFSVPADERLRAAARGDLTRLGQVQIEMEAQ--MR 58 Query 61 PKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPAVL 120 P+EIQARIR GASVEQVA A+G R+ R+A+PVLLER++ AE+A AHPV DGP V Sbjct 59 PREIQARIRGGASVEQVAEAAGIPEQRVERYAYPVLLERAQVAEMAQRAHPVREDGPDVQ 118 Query 121 TMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTPGAHGGTA 180 T+ E VA RG + + +WDAWR ED +W V+L W AGRS+N AH+ F PGAHGGT Sbjct 119 TLGEVVAHTFGMRGHDYNETSWDAWRGEDGKWVVELQWNAGRSENAAHWVFHPGAHGGTV 178 Query 181 TAIDDTAHELINPTFNRPLRPLAPVAH-----LDFDEP------EPAQPTLTVPSA 225 A+DD A +L++P+ NRPLR + PV L+ D+ EPA P PSA Sbjct 179 AALDDHAADLLDPSPNRPLRTVRPVTELAREALELDQQSGAERAEPAPPHRAEPSA 234 >gi|291009029|ref|ZP_06567002.1| hypothetical protein SeryN2_31300 [Saccharopolyspora erythraea NRRL 2338] Length=251 Score = 219 bits (557), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 117/236 (50%), Positives = 154/236 (66%), Gaps = 13/236 (5%) Query 1 MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDSVQPEQAQLDIEVTNVLS 60 MR L+VVGLD DG+ +IC+ ++F +P D+RLRAA R D + Q Q+++E + Sbjct 1 MRALRVVGLDEDGETVICEDPENGDRFSVPADERLRAAARGDLTRLGQVQIEMEAQ--MR 58 Query 61 PKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPAVL 120 P+EIQARIR GASVEQVA A+G R+ R+A+PVLLER++ AE+A AHPV DGP V Sbjct 59 PREIQARIRGGASVEQVAEAAGIPEQRVERYAYPVLLERAQVAEMAQRAHPVREDGPDVQ 118 Query 121 TMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTPGAHGGTA 180 T+ E VA RG + + +WDAWR ED +W V+L W AGRS+N AH+ F PGAHGGT Sbjct 119 TLGEVVAHTFGMRGHDYNETSWDAWRGEDGKWVVELQWNAGRSENAAHWVFHPGAHGGTV 178 Query 181 TAIDDTAHELINPTFNRPLRPLAPVAH-----LDFDE------PEPAQPTLTVPSA 225 A+DD A +L++P+ NRPLR + PV L+ D+ EPA P PSA Sbjct 179 AALDDHAADLLDPSPNRPLRTVRPVTELAREALELDQQSGAERAEPAPPHRAEPSA 234 >gi|54022621|ref|YP_116863.1| hypothetical protein nfa6540 [Nocardia farcinica IFM 10152] gi|54014129|dbj|BAD55499.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=324 Score = 218 bits (556), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 121/238 (51%), Positives = 153/238 (65%), Gaps = 9/238 (3%) Query 1 MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDSVQPEQAQLDIEVTNVLS 60 MREL+V+GL D +I+C ++F+LP DD+LRAA R D + Q++IE + Sbjct 1 MRELRVIGLTPDSTHIVCVDTESGQKFRLPADDKLRAAARGDLAR--FGQIEIETEASMR 58 Query 61 PKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPAVL 120 P++IQARIRAGASVEQV A SG AR+ RFA+PVLLER+RAAELA AHPV ADGPAV Sbjct 59 PRDIQARIRAGASVEQVTAESGMPAARVERFAYPVLLERARAAELAQKAHPVRADGPAVE 118 Query 121 TMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTPGAHGGTA 180 T+ E V AA RG ++ WDAW++E W QL W+ GRS+ AH+R+ P AHGGT Sbjct 119 TLIEVVTAAFTERGHTLENAEWDAWKDEKGFWIAQLQWQNGRSEIAAHWRYQPDAHGGTV 178 Query 181 TAIDDTAHELINPTFNRPLRPLAPVAHLDFDEPEPAQPTLTVPSAQPVSNRRGKPAIP 238 +DD A +LI+P F R LR LA + + EPEPA P A+PV R A P Sbjct 179 APLDDPAADLIDPDFGRALRGLATILPTE-PEPEPAGP------AEPVVEPRESAAAP 229 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 22/39 (57%), Positives = 27/39 (70%), Gaps = 1/39 (2%) Query 213 PEPAQPTLTVPSAQPVSNRRGKPAIPAWEDVLLGVRSGG 251 PEPA+ P A+P +RGK +P+WEDVLLGVRS G Sbjct 286 PEPAEKEQKAP-AKPARAKRGKAPMPSWEDVLLGVRSSG 323 >gi|317509198|ref|ZP_07966821.1| hypothetical protein HMPREF9336_03193 [Segniliparus rugosus ATCC BAA-974] gi|316252498|gb|EFV11945.1| hypothetical protein HMPREF9336_03193 [Segniliparus rugosus ATCC BAA-974] Length=254 Score = 215 bits (547), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 128/258 (50%), Positives = 165/258 (64%), Gaps = 13/258 (5%) Query 1 MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDSVQPEQAQLDIEVTNVLS 60 MR L+VVGL+ G+N++ + A EQF +P D LRAA D +P+ QL ++ +LS Sbjct 1 MRALRVVGLEPGGENVLLEDAHDGEQFSVPADATLRAAANGD--RPKLGQLHMQAEGMLS 58 Query 61 PKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPAVL 120 P++IQARIRAGA+VEQVAA S + R+RRFA PVLLERSR A LA +A+P +D Sbjct 59 PRDIQARIRAGATVEQVAANSDVAVERVRRFAGPVLLERSRVAGLAASAYPSRSD--HTQ 116 Query 121 TMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTPGAHGGTA 180 ++ + VAA LV+ G +P++ WDAWR D W VQL WK GRS N AH++F PG HGGT Sbjct 117 SLGQLVAARLVSLGHDPEAAHWDAWRR-DGVWVVQLRWKVGRSHNAAHWQFFPGPHGGTV 175 Query 181 TAIDDTAHELINPTFNRPLRPLAP-VAHLDFDEPE-PAQPTLTVPSAQPVSNR------R 232 TA+DD A E++ P LR +AP A PE PAQP P N R Sbjct 176 TALDDHAAEILEPEKAPALRAVAPHKAEQPQASPEAPAQPEAPALEHPPADNHPAGKKGR 235 Query 233 GKPAIPAWEDVLLGVRSG 250 GKPA+P+W++VLLGVRSG Sbjct 236 GKPALPSWDEVLLGVRSG 253 >gi|331694485|ref|YP_004330724.1| hypothetical protein Psed_0608 [Pseudonocardia dioxanivorans CB1190] gi|326949174|gb|AEA22871.1| hypothetical protein Psed_0608 [Pseudonocardia dioxanivorans CB1190] Length=484 Score = 214 bits (546), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 119/226 (53%), Positives = 153/226 (68%), Gaps = 9/226 (3%) Query 1 MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDSVQPEQAQLDIEVTNVLS 60 MR L+VVG+ DG ++ + SE+F +P D++LRAA R D + Q+ IE+ + L Sbjct 1 MRALRVVGITEDG-GVVLEDPGRSERFTVPADEQLRAAARGDLTR--LGQIAIELESQLR 57 Query 61 PKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPAVL 120 P+EIQARIRAGASVEQVAAA+G + +I RFA+PVLLERSR AE+A AHP+ ADGP V Sbjct 58 PREIQARIRAGASVEQVAAAAGVPLQKIERFAYPVLLERSRTAEMAQGAHPMRADGPDVR 117 Query 121 TMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTPGAHGGTA 180 T+ ETVA RG + WD+WR ED RW V L+W+AGRSDN AH+ + PGAHGGT Sbjct 118 TLGETVAHTFGLRGQDYLEAEWDSWRGEDGRWVVALSWRAGRSDNRAHWTYQPGAHGGTV 177 Query 181 TAIDDTAHELINPTFNRPLRPLAPVAHL----DFDEP--EPAQPTL 220 TA+D+ A +LI RPLR + PV L D +EP EPA+P + Sbjct 178 TALDEHASDLIEGLPLRPLRTVGPVIELGGRPDDEEPLHEPAEPEI 223 >gi|296395224|ref|YP_003660108.1| hypothetical protein Srot_2846 [Segniliparus rotundus DSM 44985] gi|296182371|gb|ADG99277.1| conserved hypothetical protein [Segniliparus rotundus DSM 44985] Length=260 Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 124/264 (47%), Positives = 160/264 (61%), Gaps = 19/264 (7%) Query 1 MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDSVQPEQAQLDIEVTNVLS 60 MR L+VVGL+ G+N++ + EQF +PVD LRAA D +P+ QL +E LS Sbjct 1 MRALRVVGLEPGGENVLLEDPHDGEQFSVPVDATLRAAANGD--RPKLGQLHMEAEGALS 58 Query 61 PKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPAVL 120 P+EIQARIRAGA+VE VAA S + R+RRFA PVLLERSR A LA +A+P ++ Sbjct 59 PREIQARIRAGATVEHVAANSDVSVERVRRFAGPVLLERSRVAGLAASAYPARSE--QSH 116 Query 121 TMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTPGAHGGTA 180 T+ + V+A L + G +P++ WDAWR D W VQL WK GRS N AH++F PG HGGT Sbjct 117 TLGQLVSARLTSLGHDPEAAVWDAWRR-DGAWLVQLRWKVGRSHNTAHWQFFPGPHGGTV 175 Query 181 TAIDDTAHELINPTFNRPLRPLAP------------VAHLDFDEPEPAQPTLTVPSA--Q 226 TA+D+ A +I P R LR +AP H PEP P L P Sbjct 176 TALDEHAAAIIEPEKARALRAVAPQKPTPPKNEEPRAPHEQAATPEPEAPKLEHPPTDNH 235 Query 227 PVSNRRGKPAIPAWEDVLLGVRSG 250 P + KPA+P+W++VLLGVRSG Sbjct 236 PAGKKGRKPALPSWDEVLLGVRSG 259 >gi|262201237|ref|YP_003272445.1| hypothetical protein Gbro_1257 [Gordonia bronchialis DSM 43247] gi|262084584|gb|ACY20552.1| hypothetical protein Gbro_1257 [Gordonia bronchialis DSM 43247] Length=349 Score = 209 bits (532), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 111/206 (54%), Positives = 149/206 (73%), Gaps = 2/206 (0%) Query 1 MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDSVQPEQAQLDIEVTNVLS 60 MREL+V+G+++DG ++ICQ E++++ D+RLRAA R D + Q++IE+ + L Sbjct 1 MRELRVIGVESDGTHVICQDPESGEKYRIASDERLRAAARGDISR--LGQIEIEMESALR 58 Query 61 PKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPAVL 120 P+EIQ RIRAGA+V +VAA +G + +I RFAHPVLLERSRAAELA AHP+ DGP+V Sbjct 59 PREIQQRIRAGATVVEVAAVAGVPVDKIERFAHPVLLERSRAAELAGHAHPIRQDGPSVS 118 Query 121 TMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTPGAHGGTA 180 T++E+VA AL+A G NP WDAW+ +D W VQ+AW+ GRSDN AH+RF PG+HGGT Sbjct 119 TLEESVAEALIAYGQNPQDAHWDAWKGDDGYWVVQVAWQVGRSDNAAHWRFQPGSHGGTV 178 Query 181 TAIDDTAHELINPTFNRPLRPLAPVA 206 +DD A EL +P + P R L PVA Sbjct 179 DPLDDLADELSHPEWIAPRRRLTPVA 204 >gi|257057346|ref|YP_003135178.1| hypothetical protein Svir_33870 [Saccharomonospora viridis DSM 43017] gi|256587218|gb|ACU98351.1| hypothetical protein Svir_33870 [Saccharomonospora viridis DSM 43017] Length=280 Score = 207 bits (527), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 123/283 (44%), Positives = 162/283 (58%), Gaps = 45/283 (15%) Query 6 VVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDSVQPEQAQLDIEVTNVLSPKEIQ 65 +VGL DG +I+C+ E+F LP D+RLRAA R D + QL+IE + P+EIQ Sbjct 1 MVGLHEDGTSIVCEDPERRERFLLPADERLRAAARGDIAR--LGQLEIEQEYTMRPREIQ 58 Query 66 ARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPAVLTMQET 125 +RIRAGASVE+VA+ +G AR+ RFA+PVLLERSR AELA AHPV DGP V T+ E Sbjct 59 SRIRAGASVEEVASIAGMPAARVERFAYPVLLERSRIAELAQQAHPVREDGPDVRTLGEI 118 Query 126 VAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTPGAHGGTATAIDD 185 VA + RG + +WDAWR+E+ +W V L+W AGRSDN A + ++PGAHGGT TA+++ Sbjct 119 VAHSFARRGHDYTQASWDAWRSEEGKWIVGLSWSAGRSDNRARWVYSPGAHGGTVTALNE 178 Query 186 TAHELINPTFNRPLRPL------------------------APVAHLDFDE--------- 212 A L++P R R + AP+ D D Sbjct 179 LAEALLDPDSYRAPRAVGRRGGSAYGIGLPPFGREGATVIEAPIPAGDRDRFERDTAGEH 238 Query 213 ------PEPAQPTLTVPSAQPVSNRRGKPAIPAWEDVLLGVRS 249 PE A + S +++G P +PAWEDVLLGVRS Sbjct 239 DDSELVPEQAASGDSTRS----KSKKGHPTVPAWEDVLLGVRS 277 >gi|343928828|ref|ZP_08768262.1| hypothetical protein GOALK_131_00220 [Gordonia alkanivorans NBRC 16433] gi|343761280|dbj|GAA15188.1| hypothetical protein GOALK_131_00220 [Gordonia alkanivorans NBRC 16433] Length=360 Score = 192 bits (487), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 115/206 (56%), Positives = 147/206 (72%), Gaps = 2/206 (0%) Query 1 MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDSVQPEQAQLDIEVTNVLS 60 MREL+VVG++ DG ++ICQ E+F++ D+RLRAA R D + Q++IE+ + L Sbjct 1 MRELRVVGVETDGSHVICQDPQSGEKFRIASDERLRAAARGDITR--LGQIEIEMESALR 58 Query 61 PKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPAVL 120 P+EIQARIRAGASV +VAAA+G + +I RFAHPVLLERSRA+ELA AAHP+ DGPAV Sbjct 59 PREIQARIRAGASVAEVAAAAGVGVDKIERFAHPVLLERSRASELAGAAHPIRHDGPAVA 118 Query 121 TMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTPGAHGGTA 180 T+ E+VA LVA G NP WDAW+++ W VQ+AW GR+DNLAH+R+ PG HGGT Sbjct 119 TLAESVAEGLVAYGHNPADADWDAWKDDGGYWVVQVAWSVGRTDNLAHWRYQPGTHGGTV 178 Query 181 TAIDDTAHELINPTFNRPLRPLAPVA 206 +DD A EL +P P R L PVA Sbjct 179 DPLDDLADELTHPETIAPRRRLTPVA 204 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 21/40 (53%), Positives = 25/40 (63%), Gaps = 6/40 (15%) Query 212 EPEPAQPTLTVPSAQPVSNRRGKPAIPAWEDVLLGVRSGG 251 EP PA + +P + KPA+PAWEDVLLGVRS G Sbjct 325 EPGPAH------ADRPRKKKTRKPAVPAWEDVLLGVRSNG 358 >gi|325003013|ref|ZP_08124125.1| hypothetical protein PseP1_29800 [Pseudonocardia sp. P1] Length=195 Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 99/198 (50%), Positives = 130/198 (66%), Gaps = 3/198 (1%) Query 1 MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDSVQPEQAQLDIEVTNVLS 60 MR L+VVG+ DG +++ + E++ +P D++LRAA R D + Q+ IE+ + L Sbjct 1 MRALRVVGVTGDG-SVVLEDPGRRERYTVPADEQLRAAARGDVTR--LGQIAIELESQLR 57 Query 61 PKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPAVL 120 P+EIQARIR GASV++VAAA+G +I RFA+PVLLERSR AELA AHP ADGP Sbjct 58 PREIQARIRGGASVDEVAAAAGVPTQKIERFAYPVLLERSRTAELAQGAHPQRADGPDSR 117 Query 121 TMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTPGAHGGTA 180 T+ ETVA RG + S WD+W+ ED +W V L W+ GRSDN A + F PGAHGGT Sbjct 118 TLGETVAHTFGLRGQDYASAGWDSWKGEDGKWVVVLTWQTGRSDNAARWAFQPGAHGGTV 177 Query 181 TAIDDTAHELINPTFNRP 198 A+D+ A +LI RP Sbjct 178 VALDEHASDLIEGLPARP 195 >gi|326384162|ref|ZP_08205844.1| hypothetical protein SCNU_14561 [Gordonia neofelifaecis NRRL B-59395] gi|326197027|gb|EGD54219.1| hypothetical protein SCNU_14561 [Gordonia neofelifaecis NRRL B-59395] Length=304 Score = 178 bits (452), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 115/305 (38%), Positives = 157/305 (52%), Gaps = 61/305 (20%) Query 1 MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDSV---------QPEQA-Q 50 MREL D++G I E+F++P+D+ LR + PE A Sbjct 1 MRELHADRADSEGAFIFVMDLDSGEEFQIPIDNTLRTLVHPPEPIEPDEPAEPDPEDAPA 60 Query 51 LDIEVTNVLSPKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAH 110 ++ L+P+EIQAR+R+GA+VE+++ A+G + +I RFAHPV+LERSRAAELA A+H Sbjct 61 VEAPPALTLTPREIQARVRSGATVEELSEATGVGVDKINRFAHPVILERSRAAELARASH 120 Query 111 PVLADGPAVLTMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFR 170 P+ DGP T+ E VA LV RG +P + WDAWR E +W VQ++ +D+ AH+R Sbjct 121 PMGVDGPVAGTLGEIVAECLVLRGNSPQNAEWDAWRTEAGQWVVQVSPDPD-ADSFAHWR 179 Query 171 FTPGAHGGTATAIDDTAHELINPTFNRPLR------------------------------ 200 FTPGAHGGT +DD A EL P R +R Sbjct 180 FTPGAHGGTTDPMDDLAVELTEPELARTVRRPAVVAVPEPPTREVTEDGHEYVTVNADDL 239 Query 201 ---------PLAPVAHLDFDEPEPAQPTLTVPSAQPVSN-------RRGKPAIPAWEDVL 244 P V L + + P + P+AQ S+ +R KP +PAWEDVL Sbjct 240 TGEQTHRQDPFGEVLDLRYRDERPVE----GPAAQEDSDSTPRHRSKRAKPTVPAWEDVL 295 Query 245 LGVRS 249 LGVRS Sbjct 296 LGVRS 300 >gi|319949078|ref|ZP_08023173.1| hypothetical protein ES5_06722 [Dietzia cinnamea P4] gi|319437253|gb|EFV92278.1| hypothetical protein ES5_06722 [Dietzia cinnamea P4] Length=207 Score = 172 bits (436), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 93/204 (46%), Positives = 135/204 (67%), Gaps = 3/204 (1%) Query 1 MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDSVQPEQAQLDIEVTNVLS 60 MR+L+++G+D + + C+ E+F LP+DDR RAA R + V + VT L Sbjct 1 MRKLRIIGVDTESSVVECEVPDSGEKFTLPLDDRFRAAARGEFVAGGSDR--APVTGTLR 58 Query 61 PKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPAVL 120 P+EIQ RIR GAS E+VAA +G ++RI FA PVLLER+ AA+LA +AHPVL DGPA+ Sbjct 59 PREIQDRIRHGASPEEVAADAGVPLSRIEGFAVPVLLERANAADLARSAHPVLPDGPALN 118 Query 121 TMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNL-AHFRFTPGAHGGT 179 T+ + V AAL RG++PD +TWDAW++ W V+ +W AG SD+ A + F P +HGG+ Sbjct 119 TLADRVGAALDRRGVDPDLVTWDAWKDRSGGWVVRTSWPAGLSDDASATWSFVPDSHGGS 178 Query 180 ATAIDDTAHELINPTFNRPLRPLA 203 A A+D+ A +++P+ LR ++ Sbjct 179 ARALDEEAERILDPSRATALRSVS 202 >gi|227501413|ref|ZP_03931462.1| DNA-binding protein [Corynebacterium accolens ATCC 49725] gi|227077438|gb|EEI15401.1| DNA-binding protein [Corynebacterium accolens ATCC 49725] Length=282 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 107/280 (39%), Positives = 152/280 (55%), Gaps = 28/280 (10%) Query 1 MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDSVQPEQAQL-------DI 53 MREL +V ++ +++ + E+F LP+ D LR+AL + +PE +L Sbjct 1 MRELFLVDSESSEDSLVLRTE-EGEEFSLPITDELRSALTPAASKPEPPKLAPMPKPSHE 59 Query 54 EVTNVLSPKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVL 113 E + P EIQ RIRAGAS ++A D +RI FA+PV+LER+R +E+A AHPV Sbjct 60 EEEKQIRPAEIQNRIRAGASTAELAEEMHVDESRIEPFAYPVMLERNRISEVAKQAHPVR 119 Query 114 ADGPAVLTMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTP 173 DGPA LT+ E +A++ ARG + TWDA+R++ W V++ WKAG S+N A + F Sbjct 120 EDGPAKLTLWEVLASSFAARGHSLSESTWDAYRHQGEPWVVRVTWKAGLSENEAEWTFKQ 179 Query 174 GAHG-GTATAIDDTAHELINPTFNRPLRPLAPVAHLDFDEP----EPAQPT--------- 219 T A + A +L +P F +P+R L + +DE +PA T Sbjct 180 SMSSPATVEARNSVAADLTDPDFVQPVRSLTSLGSGRYDEAIDGDQPANVTDISGSSEET 239 Query 220 -----LTVPSAQPV-SNRRGKPAIPAWEDVLLGVRSGGRR 253 L PS++P S RR K P WEDVLLGVRS +R Sbjct 240 EEDEFLQNPSSEPKPSKRRRKAVTPHWEDVLLGVRSNTKR 279 >gi|306835566|ref|ZP_07468579.1| DNA-binding protein [Corynebacterium accolens ATCC 49726] gi|304568566|gb|EFM44118.1| DNA-binding protein [Corynebacterium accolens ATCC 49726] Length=282 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 106/280 (38%), Positives = 151/280 (54%), Gaps = 28/280 (10%) Query 1 MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDSVQPEQAQL-------DI 53 MREL +V ++ +++ + E+F LP+ D LR+AL + +PE +L Sbjct 1 MRELFLVDSESSEDSLVLRTE-EGEEFSLPITDELRSALTPTASKPEPPKLAPMPKPSHE 59 Query 54 EVTNVLSPKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVL 113 E + P EIQ RIRAGAS ++A D +RI FA+PV+LER+R +E+A AHPV Sbjct 60 EEEKQIRPAEIQNRIRAGASTAELAEEMHVDESRIEPFAYPVMLERNRISEVAKQAHPVR 119 Query 114 ADGPAVLTMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTP 173 DGPA LT+ E +A++ ARG + TWDA+R++ W V++ WKAG S+N A + F Sbjct 120 EDGPAKLTLWEVLASSFAARGHSLSESTWDAYRHQGEPWVVRVTWKAGLSENEAEWTFKQ 179 Query 174 GAHG-GTATAIDDTAHELINPTFNRPLRPLAPVAHLDFDEP----EPAQPT--------- 219 T A + A +L +P F +P+R L + +DE +PA T Sbjct 180 SMSSPATVEARNSVAADLTDPDFVQPVRSLTSLGSGRYDEAIDGDQPANVTDISGSSEET 239 Query 220 -----LTVPSAQPV-SNRRGKPAIPAWEDVLLGVRSGGRR 253 L PS++ S RR K P WEDVLLGVRS +R Sbjct 240 EEEEFLQNPSSESKPSKRRRKAVTPHWEDVLLGVRSNTKR 279 >gi|258654819|ref|YP_003203975.1| hypothetical protein Namu_4710 [Nakamurella multipartita DSM 44233] gi|258558044|gb|ACV80986.1| hypothetical protein Namu_4710 [Nakamurella multipartita DSM 44233] Length=343 Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 87/203 (43%), Positives = 126/203 (63%), Gaps = 4/203 (1%) Query 1 MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDSVQPEQAQLDIEVTNVLS 60 MR L+V+GL DG+N++C+ + E F L D+RLRAA+R + Q +E L Sbjct 1 MRALRVLGLAEDGENLLCEDTVTGEVFSLRSDERLRAAVRGELRG--TGQRSVETDPQLR 58 Query 61 PKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPAVL 120 P+EIQARIRAG ++ +VAA + + ++RI +A+PV+LER+ A+ A AAHP++ P Sbjct 59 PREIQARIRAGKTMAEVAAEAVTSVSRIESYAYPVMLERASMADKARAAHPMVDGNPTRK 118 Query 121 TMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRFTPGAHGGTA 180 T++E V A L RG + + + WDA+R +D W V + W AGRSDN A + G T Sbjct 119 TLEEIVTATLRQRG-HAEGMRWDAFRPDDGGWLVVVHWHAGRSDNHATWEVHTGPRTTTL 177 Query 181 TAIDDTAHELINPTFNRPLRPLA 203 A DD A EL++P+ RPLR +A Sbjct 178 RAADDAARELLDPS-PRPLRTIA 199 >gi|311740918|ref|ZP_07714745.1| DNA-binding protein [Corynebacterium pseudogenitalium ATCC 33035] gi|311304438|gb|EFQ80514.1| DNA-binding protein [Corynebacterium pseudogenitalium ATCC 33035] Length=332 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 105/292 (36%), Positives = 148/292 (51%), Gaps = 43/292 (14%) Query 1 MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDS---------------VQ 45 MREL V ++ +++ + E+F L + D LR AL+ + + Sbjct 42 MRELFPVDSESTETSLVLRTE-DGEEFFLSITDELREALQGEPVETPEEEPAAPAISLAK 100 Query 46 PEQAQLDIEVTNVLSPKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAEL 105 P + + +E T + P EIQ RIRAGAS ++A G +RI FA+PV+LER+R AE+ Sbjct 101 PTKPE-PVEETKI-RPAEIQNRIRAGASAAELAEEMGVTESRIEPFAYPVMLERNRIAEI 158 Query 106 ATAAHPVLADGPAVLTMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDN 165 A AHPV DGPA LT+ E +A A ARG + TWDA+R++ W V++ WKAG S+N Sbjct 159 AKQAHPVREDGPAKLTLWEVLATAFAARGHSLSKSTWDAYRHQGEAWIVRVTWKAGLSEN 218 Query 166 LAHFRFTPGAHG-GTATAIDDTAHELINPTFNRPLRPLAPVAHLDFDEP----EPAQPT- 219 A + F T A + A +L +P F +P+R L + +DE +P+ T Sbjct 219 EAEWYFKQSMSSPATVEARNSVAADLTDPDFVQPVRSLTSLGSGRYDEAIDGDQPSNVTD 278 Query 220 LTV------------------PSAQPVSNRRGKPAIPAWEDVLLGVRSGGRR 253 LT P +P RR K P WEDVLLGVRS +R Sbjct 279 LTAPTTPPEEPEEEEFLQNPSPEEKPTKRRR-KAVTPHWEDVLLGVRSNTKR 329 >gi|255324979|ref|ZP_05366086.1| DNA-binding protein [Corynebacterium tuberculostearicum SK141] gi|255297968|gb|EET77278.1| DNA-binding protein [Corynebacterium tuberculostearicum SK141] Length=291 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 105/292 (36%), Positives = 148/292 (51%), Gaps = 43/292 (14%) Query 1 MRELKVVGLDADGKNIICQGAIPSEQFKLPVDDRLRAALRDDS---------------VQ 45 MREL V ++ +++ + E+F L + D LR AL+ + + Sbjct 1 MRELFPVDSESTETSLVLRTE-DGEEFFLSITDELREALQGEPVETPEEEPAAPAISLAK 59 Query 46 PEQAQLDIEVTNVLSPKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAEL 105 P + + +E T + P EIQ RIRAGAS ++A G +RI FA+PV+LER+R AE+ Sbjct 60 PTKPE-PVEETKI-RPAEIQNRIRAGASAAELAEEMGVPESRIEPFAYPVMLERNRIAEI 117 Query 106 ATAAHPVLADGPAVLTMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDN 165 A AHPV DGPA LT+ E +A A ARG + TWDA+R++ W V++ WKAG S+N Sbjct 118 AKQAHPVREDGPAKLTLWEVLATAFAARGHSLSESTWDAYRHQGEAWIVRVTWKAGLSEN 177 Query 166 LAHFRFTPGAHG-GTATAIDDTAHELINPTFNRPLRPLAPVAHLDFDEP----EPAQPT- 219 A + F T A + A +L +P F +P+R L + +DE +P+ T Sbjct 178 EAEWYFKQSMSSPATVEARNSVAADLTDPDFVQPVRSLTSLGSGRYDEAIDGDQPSNVTD 237 Query 220 LTV------------------PSAQPVSNRRGKPAIPAWEDVLLGVRSGGRR 253 LT P +P RR K P WEDVLLGVRS +R Sbjct 238 LTAPTTPPEEPEEEEFLQNPSPEEKPTKRRR-KAVTPHWEDVLLGVRSNTKR 288 >gi|305681761|ref|ZP_07404565.1| conserved hypothetical protein [Corynebacterium matruchotii ATCC 14266] gi|305658234|gb|EFM47737.1| conserved hypothetical protein [Corynebacterium matruchotii ATCC 14266] Length=364 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 88/221 (40%), Positives = 124/221 (57%), Gaps = 28/221 (12%) Query 59 LSPKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAELATAAHPVLADGPA 118 ++P+EIQ+RIR GASV ++AAA+ +RI +AHPVLLERS+ AE+A AHPV DGPA Sbjct 143 MTPREIQSRIRGGASVAEIAAANDVPESRIESYAHPVLLERSQKAEMAKRAHPVRDDGPA 202 Query 119 VLTMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSDNLAHFRF-TPGAHG 177 LT+ E + ARGL+ + TWD++R+ +W V ++W +G ++++A + + G Sbjct 203 RLTLWEILDTVFTARGLDVRNSTWDSYRDTTGQWVVTVSWTSGAAEHVAEWSYHQQGMTS 262 Query 178 GTATAIDDTAHELINPTFNRPLRPLA------PVAHLDF-DEPEPAQPTLTVPSAQPV-- 228 TA A + A LI+P F P+R L+ PV D D+P+ Q QPV Sbjct 263 ATAVARNGLAASLIDPDFVPPVRNLSAITSPIPVVTDDMIDDPQKVQQ--ISAQQQPVVS 320 Query 229 ----------------SNRRGKPAIPAWEDVLLGVRSGGRR 253 + RR K P WEDVLLGVRS +R Sbjct 321 EETTGEAIHDSPQTAQARRRRKAVTPHWEDVLLGVRSNAKR 361 >gi|25027458|ref|NP_737512.1| hypothetical protein CE0902 [Corynebacterium efficiens YS-314] gi|259507135|ref|ZP_05750035.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] gi|23492740|dbj|BAC17712.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] gi|259165290|gb|EEW49844.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] Length=350 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 95/241 (40%), Positives = 130/241 (54%), Gaps = 37/241 (15%) Query 47 EQAQLDIEVTN--VLSPKEIQARIRAGASVEQVAAASGSDIARIRRFAHPVLLERSRAAE 104 E+ ++D ++ ++SP+EIQ RIRAGA+V +VA +G ARI +AHPVLLER+R AE Sbjct 110 EEREIDPRISAPLIMSPREIQTRIRAGATVAEVAEENGVTEARIEPYAHPVLLERARIAE 169 Query 105 LATAAHPVLADGPAVLTMQETVAAALVARGLNPDSLTWDAWRNEDSRWTVQLAWKAGRSD 164 LA +HPV DGPA LT+ E +A A ARG + S WDA+R+ ++W V++ WKAG S+ Sbjct 170 LAKQSHPVREDGPAKLTLWEILATAFAARGHDLTSAVWDAYRDASNQWIVRVDWKAGLSN 229 Query 165 NLAHFRFTPGAHGGTATAID---DTAHELINPTFNRPLRPLAPVAHLDF----------- 210 N H ++ H ++ D A +LI+P F +P+R L V + Sbjct 230 N--HAEWSLNLHNTSSPTSDPRTPVAADLIDPDFIQPVRTLTSVGGGKYAGDDEDYENSG 287 Query 211 -----------------DEPEPAQ-PTLTVPSAQPVSNRRGKPAIPAWEDVLLGVRSGGR 252 DE A+ T P P NRR K P WEDVLLGVR+ R Sbjct 288 DDDRRADEHATGRTDADDEVTAAEGETGRAPEEAP-RNRRRKAVTPHWEDVLLGVRANTR 346 Query 253 R 253 R Sbjct 347 R 347 >gi|145294996|ref|YP_001137817.1| hypothetical protein cgR_0941 [Corynebacterium glutamicum R] gi|140844916|dbj|BAF53915.1| hypothetical protein [Corynebacterium glutamicum R] gi|344043567|gb|EGV39256.1| hypothetical protein CgS9114_13675 [Corynebacterium glutamicum S9114] Length=311 Score = 138 bits (348), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 102/313 (33%), Positives = 153/313 (49%), Gaps = 65/313 (20%) Query 1 MRELKVVGLDADGKNIICQGAIP--SEQFKLPVDDRLRAALRDDS--------------- 43 MRE+ ++ D+ +++ + + +E+F + V D L A L S Sbjct 1 MREIFLISGDSTESSLVFKTSEEDGAEEFFIAVTDELHAILAGHSEIKSAPEPEEHKEVP 60 Query 44 ---VQP--------EQAQLD--IEVTNVLSPKEIQARIRAGASVEQVAAASGSDIARIRR 90 ++P E+ ++D I +SP+EIQ R+R+GA++E++A G AR+ Sbjct 61 PPVLEPVAAVEEPREEKEIDPRISAPLTMSPREIQIRVRSGATIEELAEEIGVTEARVEP 120 Query 91 FAHPVLLERSRAAELATAAHPVLADGPAVLTMQETVAAALVARGLNPDSLTWDAWRNEDS 150 +AHPVLLER+R A+LA +HP+ +GPA LT+ E +A A RG + + WDA+++ + Sbjct 121 YAHPVLLERARIADLAKQSHPIRENGPAKLTLWEILATAFATRGHDLTTARWDAYKDATN 180 Query 151 RWTVQLAWKAGRSDNLA------HFRFTPGAHGGTATAIDDTAHELINPTFNRPLRPLAP 204 +W V++ WKAG SDN A H P A T A D LI+P F +P+R LA Sbjct 181 QWIVRVDWKAGLSDNYAEWTLNLHNTSNPTADPRTPVAAD-----LIDPEFIQPVRTLAS 235 Query 205 V--AHLDFDEPEPAQPTLTVPSAQPVS----------------------NRRGKPAIPAW 240 V +D+ T+ P P S NRR K P W Sbjct 236 VNSTQEHYDDETDVFDTVPSPDDAPDSESDAVAEITNDNEPEVDAEGPRNRRRKAVTPHW 295 Query 241 EDVLLGVRSGGRR 253 EDVLLGVR+ +R Sbjct 296 EDVLLGVRANTKR 308 Lambda K H 0.317 0.132 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 368391130380 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40