BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0891c

Length=285
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|340625902|ref|YP_004744354.1|  luxr family transcriptional reg...   582    1e-164
gi|15608031|ref|NP_215406.1|  transcriptional regulatory protein ...   577    9e-163
gi|15840309|ref|NP_335346.1|  hypothetical protein MT0915 [Mycoba...   573    8e-162
gi|308378752|ref|ZP_07483786.2|  transcriptional regulator [Mycob...   411    6e-113
gi|308231665|ref|ZP_07413354.2|  transcriptional regulator [Mycob...   406    2e-111
gi|254363822|ref|ZP_04979868.1|  hypothetical transcriptional reg...   394    9e-108
gi|167968337|ref|ZP_02550614.1|  hypothetical transcriptional reg...   363    2e-98 
gi|254819266|ref|ZP_05224267.1|  regulatory protein, LuxR [Mycoba...   275    7e-72 
gi|240170120|ref|ZP_04748779.1|  regulatory protein, LuxR [Mycoba...   275    8e-72 
gi|296169886|ref|ZP_06851498.1|  LuxR family transcriptional regu...   269    4e-70 
gi|240173083|ref|ZP_04751741.1|  LuxR family transcriptional regu...   262    5e-68 
gi|296168206|ref|ZP_06850198.1|  LuxR family transcriptional regu...   259    3e-67 
gi|120406868|ref|YP_956697.1|  regulatory protein LuxR [Mycobacte...   258    9e-67 
gi|254819180|ref|ZP_05224181.1|  regulatory protein, LuxR [Mycoba...   254    8e-66 
gi|183980157|ref|YP_001848448.1|  LuxR family transcriptional reg...   254    1e-65 
gi|240169124|ref|ZP_04747783.1|  transcriptional regulatory prote...   248    6e-64 
gi|15839770|ref|NP_334807.1|  LuxR family transcriptional regulat...   246    2e-63 
gi|289756454|ref|ZP_06515832.1|  transcriptional regulator [Mycob...   246    3e-63 
gi|289748870|ref|ZP_06508248.1|  luxR family transcriptional regu...   246    3e-63 
gi|31791563|ref|NP_854056.1|  LuxR/UHPA family transcriptional re...   245    4e-63 
gi|254230743|ref|ZP_04924070.1|  hypothetical protein TBCG_00379 ...   245    5e-63 
gi|289445924|ref|ZP_06435668.1|  transcriptional regulator, luxR/...   245    5e-63 
gi|167966904|ref|ZP_02549181.1|  LuxR family transcriptional regu...   245    5e-63 
gi|289752415|ref|ZP_06511793.1|  LuxR/UHPA family transcriptional...   245    5e-63 
gi|15607527|ref|NP_214900.1|  LuxR/UHPA family transcriptional re...   245    5e-63 
gi|289744083|ref|ZP_06503461.1|  LuxR family transcriptional regu...   245    5e-63 
gi|148821582|ref|YP_001286336.1|  LuxR family transcriptional reg...   245    6e-63 
gi|289441765|ref|ZP_06431509.1|  transcriptional regulator, luxR/...   244    1e-62 
gi|308231538|ref|ZP_07663879.1|  hypothetical protein TMAG_01645 ...   242    4e-62 
gi|289572971|ref|ZP_06453198.1|  transcriptional regulator, luxR/...   242    5e-62 
gi|121638369|ref|YP_978593.1|  LuxR family transcriptional regula...   228    7e-58 
gi|15609625|ref|NP_217004.1|  LuxR family transcriptional regulat...   228    7e-58 
gi|339295373|gb|AEJ47484.1|  putative transcriptional regulator, ...   228    8e-58 
gi|289575185|ref|ZP_06455412.1|  transcriptional regulator, luxR-...   228    8e-58 
gi|339632514|ref|YP_004724156.1|  LuxR family transcriptional reg...   228    8e-58 
gi|294994407|ref|ZP_06800098.1|  LuxR family transcriptional regu...   228    8e-58 
gi|308232152|ref|ZP_07415096.2|  putative transcriptional regulat...   228    9e-58 
gi|15842015|ref|NP_337052.1|  LuxR family transcriptional regulat...   228    9e-58 
gi|308380381|ref|ZP_07669177.1|  putative transcriptional regulat...   228    1e-57 
gi|289444015|ref|ZP_06433759.1|  probable transcriptional regulat...   227    2e-57 
gi|308369732|ref|ZP_07666794.1|  hypothetical protein TMBG_01027 ...   227    2e-57 
gi|289448131|ref|ZP_06437875.1|  LuxR family transcriptional regu...   226    2e-57 
gi|289758620|ref|ZP_06517998.1|  transcriptional regulatory prote...   226    2e-57 
gi|253798434|ref|YP_003031435.1|  transcriptional regulator, luxR...   226    4e-57 
gi|340627502|ref|YP_004745954.1|  putative transcriptional regula...   223    2e-56 
gi|339631427|ref|YP_004723069.1|  transcriptional regulator [Myco...   216    4e-54 
gi|31792554|ref|NP_855047.1|  transcriptional regulatory protein ...   216    4e-54 
gi|340626374|ref|YP_004744826.1|  putative transcriptional regula...   216    4e-54 
gi|254364250|ref|ZP_04980296.1|  hypothetical transcriptional reg...   216    4e-54 
gi|326902980|gb|EGE49913.1|  transcriptional regulator [Mycobacte...   216    4e-54 


>gi|340625902|ref|YP_004744354.1| luxr family transcriptional regulator [Mycobacterium canettii 
CIPT 140010059]
 gi|340004092|emb|CCC43229.1| luxr family transcriptional regulator [Mycobacterium canettii 
CIPT 140010059]
Length=1168

 Score =  582 bits (1501),  Expect = 1e-164, Method: Compositional matrix adjust.
 Identities = 282/285 (99%), Positives = 283/285 (99%), Gaps = 0/285 (0%)

Query  1    VLFNAVHNSLPPNIDIDHAILRGEDHPPTCAKCVARVRISALGSLDLRYHSLRCYAAPPD  60
            +LFNAVHNSLPPNIDIDHAILRGEDHPPTCAKCVAR RISALGSLDLRYHSLRCYAAPPD
Sbjct  1    MLFNAVHNSLPPNIDIDHAILRGEDHPPTCAKCVARGRISALGSLDLRYHSLRCYAAPPD  60

Query  61   VGRCEFVPPRRRVLIANQGLDVSRLPPTGTVTLLLADVEESTHLWQMCPEDMATAIAHLD  120
            VGRCEFVPPRRRVLIANQGLDVSRL PTGTVTLLLADVEESTHLWQMCPEDMATAIAHLD
Sbjct  61   VGRCEFVPPRRRVLIANQGLDVSRLLPTGTVTLLLADVEESTHLWQMCPEDMATAIAHLD  120

Query  121  HTVSEAITNHGGVQPVKRYEGDSFVAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEV  180
            HTVSEAITNHGGVQPVKRYEGDSFVAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEV
Sbjct  121  HTVSEAITNHGGVQPVKRYEGDSFVAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEV  180

Query  181  QLRDELYVGPTINRTARLRDLAHGGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPR  240
            QLRDELYVGPTINRTARLRDLAHGGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPR
Sbjct  181  QLRDELYVGPTINRTARLRDLAHGGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPR  240

Query  241  PEWVMQLCHPDIREKFPPLRTAKSSPTSILPAQFTTFVGRRAQIS  285
            PEWVMQLCHPDIREKFPPLRTAKSSPTSILPAQFTTFVGRRAQIS
Sbjct  241  PEWVMQLCHPDIREKFPPLRTAKSSPTSILPAQFTTFVGRRAQIS  285


>gi|15608031|ref|NP_215406.1| transcriptional regulatory protein [Mycobacterium tuberculosis 
H37Rv]
 gi|148660669|ref|YP_001282192.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis 
H37Ra]
 gi|1731384|sp|Q10551.1|Y891_MYCTU RecName: Full=Uncharacterized protein Rv0891c/MT0915
 gi|1314030|emb|CAA97397.1| POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium tuberculosis 
H37Rv]
 gi|148504821|gb|ABQ72630.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis 
H37Ra]
Length=285

 Score =  577 bits (1486),  Expect = 9e-163, Method: Compositional matrix adjust.
 Identities = 284/285 (99%), Positives = 285/285 (100%), Gaps = 0/285 (0%)

Query  1    VLFNAVHNSLPPNIDIDHAILRGEDHPPTCAKCVARVRISALGSLDLRYHSLRCYAAPPD  60
            +LFNAVHNSLPPNIDIDHAILRGEDHPPTCAKCVARVRISALGSLDLRYHSLRCYAAPPD
Sbjct  1    MLFNAVHNSLPPNIDIDHAILRGEDHPPTCAKCVARVRISALGSLDLRYHSLRCYAAPPD  60

Query  61   VGRCEFVPPRRRVLIANQGLDVSRLPPTGTVTLLLADVEESTHLWQMCPEDMATAIAHLD  120
            VGRCEFVPPRRRVLIANQGLDVSRLPPTGTVTLLLADVEESTHLWQMCPEDMATAIAHLD
Sbjct  61   VGRCEFVPPRRRVLIANQGLDVSRLPPTGTVTLLLADVEESTHLWQMCPEDMATAIAHLD  120

Query  121  HTVSEAITNHGGVQPVKRYEGDSFVAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEV  180
            HTVSEAITNHGGVQPVKRYEGDSFVAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEV
Sbjct  121  HTVSEAITNHGGVQPVKRYEGDSFVAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEV  180

Query  181  QLRDELYVGPTINRTARLRDLAHGGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPR  240
            QLRDELYVGPTINRTARLRDLAHGGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPR
Sbjct  181  QLRDELYVGPTINRTARLRDLAHGGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPR  240

Query  241  PEWVMQLCHPDIREKFPPLRTAKSSPTSILPAQFTTFVGRRAQIS  285
            PEWVMQLCHPDIREKFPPLRTAKSSPTSILPAQFTTFVGRRAQIS
Sbjct  241  PEWVMQLCHPDIREKFPPLRTAKSSPTSILPAQFTTFVGRRAQIS  285


>gi|15840309|ref|NP_335346.1| hypothetical protein MT0915 [Mycobacterium tuberculosis CDC1551]
 gi|31792079|ref|NP_854572.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97]
 gi|121636814|ref|YP_977037.1| putative transcriptional regulatory protein [Mycobacterium bovis 
BCG str. Pasteur 1173P2]
 42 more sequence titles
 Length=285

 Score =  573 bits (1478),  Expect = 8e-162, Method: Compositional matrix adjust.
 Identities = 283/285 (99%), Positives = 284/285 (99%), Gaps = 0/285 (0%)

Query  1    VLFNAVHNSLPPNIDIDHAILRGEDHPPTCAKCVARVRISALGSLDLRYHSLRCYAAPPD  60
            +LFNAVHNSLPPNIDIDHAILRGEDHPPTCAKCVAR RISALGSLDLRYHSLRCYAAPPD
Sbjct  1    MLFNAVHNSLPPNIDIDHAILRGEDHPPTCAKCVARGRISALGSLDLRYHSLRCYAAPPD  60

Query  61   VGRCEFVPPRRRVLIANQGLDVSRLPPTGTVTLLLADVEESTHLWQMCPEDMATAIAHLD  120
            VGRCEFVPPRRRVLIANQGLDVSRLPPTGTVTLLLADVEESTHLWQMCPEDMATAIAHLD
Sbjct  61   VGRCEFVPPRRRVLIANQGLDVSRLPPTGTVTLLLADVEESTHLWQMCPEDMATAIAHLD  120

Query  121  HTVSEAITNHGGVQPVKRYEGDSFVAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEV  180
            HTVSEAITNHGGVQPVKRYEGDSFVAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEV
Sbjct  121  HTVSEAITNHGGVQPVKRYEGDSFVAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEV  180

Query  181  QLRDELYVGPTINRTARLRDLAHGGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPR  240
            QLRDELYVGPTINRTARLRDLAHGGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPR
Sbjct  181  QLRDELYVGPTINRTARLRDLAHGGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPR  240

Query  241  PEWVMQLCHPDIREKFPPLRTAKSSPTSILPAQFTTFVGRRAQIS  285
            PEWVMQLCHPDIREKFPPLRTAKSSPTSILPAQFTTFVGRRAQIS
Sbjct  241  PEWVMQLCHPDIREKFPPLRTAKSSPTSILPAQFTTFVGRRAQIS  285


>gi|308378752|ref|ZP_07483786.2| transcriptional regulator [Mycobacterium tuberculosis SUMu010]
 gi|308359264|gb|EFP48115.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010]
Length=204

 Score =  411 bits (1057),  Expect = 6e-113, Method: Compositional matrix adjust.
 Identities = 203/204 (99%), Positives = 204/204 (100%), Gaps = 0/204 (0%)

Query  82   VSRLPPTGTVTLLLADVEESTHLWQMCPEDMATAIAHLDHTVSEAITNHGGVQPVKRYEG  141
            +SRLPPTGTVTLLLADVEESTHLWQMCPEDMATAIAHLDHTVSEAITNHGGVQPVKRYEG
Sbjct  1    MSRLPPTGTVTLLLADVEESTHLWQMCPEDMATAIAHLDHTVSEAITNHGGVQPVKRYEG  60

Query  142  DSFVAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEVQLRDELYVGPTINRTARLRDL  201
            DSFVAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEVQLRDELYVGPTINRTARLRDL
Sbjct  61   DSFVAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEVQLRDELYVGPTINRTARLRDL  120

Query  202  AHGGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPRPEWVMQLCHPDIREKFPPLRT  261
            AHGGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPRPEWVMQLCHPDIREKFPPLRT
Sbjct  121  AHGGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPRPEWVMQLCHPDIREKFPPLRT  180

Query  262  AKSSPTSILPAQFTTFVGRRAQIS  285
            AKSSPTSILPAQFTTFVGRRAQIS
Sbjct  181  AKSSPTSILPAQFTTFVGRRAQIS  204


>gi|308231665|ref|ZP_07413354.2| transcriptional regulator [Mycobacterium tuberculosis SUMu001]
 gi|308370132|ref|ZP_07420407.2| transcriptional regulator [Mycobacterium tuberculosis SUMu002]
 gi|308370529|ref|ZP_07421884.2| transcriptional regulator [Mycobacterium tuberculosis SUMu003]
 19 more sequence titles
 Length=201

 Score =  406 bits (1044),  Expect = 2e-111, Method: Compositional matrix adjust.
 Identities = 200/201 (99%), Positives = 201/201 (100%), Gaps = 0/201 (0%)

Query  85   LPPTGTVTLLLADVEESTHLWQMCPEDMATAIAHLDHTVSEAITNHGGVQPVKRYEGDSF  144
            +PPTGTVTLLLADVEESTHLWQMCPEDMATAIAHLDHTVSEAITNHGGVQPVKRYEGDSF
Sbjct  1    MPPTGTVTLLLADVEESTHLWQMCPEDMATAIAHLDHTVSEAITNHGGVQPVKRYEGDSF  60

Query  145  VAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEVQLRDELYVGPTINRTARLRDLAHG  204
            VAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEVQLRDELYVGPTINRTARLRDLAHG
Sbjct  61   VAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEVQLRDELYVGPTINRTARLRDLAHG  120

Query  205  GQVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPRPEWVMQLCHPDIREKFPPLRTAKS  264
            GQVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPRPEWVMQLCHPDIREKFPPLRTAKS
Sbjct  121  GQVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPRPEWVMQLCHPDIREKFPPLRTAKS  180

Query  265  SPTSILPAQFTTFVGRRAQIS  285
            SPTSILPAQFTTFVGRRAQIS
Sbjct  181  SPTSILPAQFTTFVGRRAQIS  201


>gi|254363822|ref|ZP_04979868.1| hypothetical transcriptional regulatory protein [Mycobacterium 
tuberculosis str. Haarlem]
 gi|134149336|gb|EBA41381.1| hypothetical transcriptional regulatory protein [Mycobacterium 
tuberculosis str. Haarlem]
 gi|339293902|gb|AEJ46013.1| hypothetical protein CCDC5079_0823 [Mycobacterium tuberculosis 
CCDC5079]
Length=195

 Score =  394 bits (1012),  Expect = 9e-108, Method: Compositional matrix adjust.
 Identities = 194/195 (99%), Positives = 195/195 (100%), Gaps = 0/195 (0%)

Query  91   VTLLLADVEESTHLWQMCPEDMATAIAHLDHTVSEAITNHGGVQPVKRYEGDSFVAAFTR  150
            +TLLLADVEESTHLWQMCPEDMATAIAHLDHTVSEAITNHGGVQPVKRYEGDSFVAAFTR
Sbjct  1    MTLLLADVEESTHLWQMCPEDMATAIAHLDHTVSEAITNHGGVQPVKRYEGDSFVAAFTR  60

Query  151  ASDAAACALDLQRTSLAPIRLRIGLHTGEVQLRDELYVGPTINRTARLRDLAHGGQVVLS  210
            ASDAAACALDLQRTSLAPIRLRIGLHTGEVQLRDELYVGPTINRTARLRDLAHGGQVVLS
Sbjct  61   ASDAAACALDLQRTSLAPIRLRIGLHTGEVQLRDELYVGPTINRTARLRDLAHGGQVVLS  120

Query  211  AATGDLVTGRLPADAWLVDLGRHPLRGLPRPEWVMQLCHPDIREKFPPLRTAKSSPTSIL  270
            AATGDLVTGRLPADAWLVDLGRHPLRGLPRPEWVMQLCHPDIREKFPPLRTAKSSPTSIL
Sbjct  121  AATGDLVTGRLPADAWLVDLGRHPLRGLPRPEWVMQLCHPDIREKFPPLRTAKSSPTSIL  180

Query  271  PAQFTTFVGRRAQIS  285
            PAQFTTFVGRRAQIS
Sbjct  181  PAQFTTFVGRRAQIS  195


>gi|167968337|ref|ZP_02550614.1| hypothetical transcriptional regulatory protein [Mycobacterium 
tuberculosis H37Ra]
 gi|254549868|ref|ZP_05140315.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
Length=179

 Score =  363 bits (932),  Expect = 2e-98, Method: Compositional matrix adjust.
 Identities = 179/179 (100%), Positives = 179/179 (100%), Gaps = 0/179 (0%)

Query  107  MCPEDMATAIAHLDHTVSEAITNHGGVQPVKRYEGDSFVAAFTRASDAAACALDLQRTSL  166
            MCPEDMATAIAHLDHTVSEAITNHGGVQPVKRYEGDSFVAAFTRASDAAACALDLQRTSL
Sbjct  1    MCPEDMATAIAHLDHTVSEAITNHGGVQPVKRYEGDSFVAAFTRASDAAACALDLQRTSL  60

Query  167  APIRLRIGLHTGEVQLRDELYVGPTINRTARLRDLAHGGQVVLSAATGDLVTGRLPADAW  226
            APIRLRIGLHTGEVQLRDELYVGPTINRTARLRDLAHGGQVVLSAATGDLVTGRLPADAW
Sbjct  61   APIRLRIGLHTGEVQLRDELYVGPTINRTARLRDLAHGGQVVLSAATGDLVTGRLPADAW  120

Query  227  LVDLGRHPLRGLPRPEWVMQLCHPDIREKFPPLRTAKSSPTSILPAQFTTFVGRRAQIS  285
            LVDLGRHPLRGLPRPEWVMQLCHPDIREKFPPLRTAKSSPTSILPAQFTTFVGRRAQIS
Sbjct  121  LVDLGRHPLRGLPRPEWVMQLCHPDIREKFPPLRTAKSSPTSILPAQFTTFVGRRAQIS  179


>gi|254819266|ref|ZP_05224267.1| regulatory protein, LuxR [Mycobacterium intracellulare ATCC 13950]
Length=1082

 Score =  275 bits (702),  Expect = 7e-72, Method: Compositional matrix adjust.
 Identities = 136/201 (68%), Positives = 158/201 (79%), Gaps = 1/201 (0%)

Query  85   LPPTGTVTLLLADVEESTHLWQMCPEDMATAIAHLDHTVSEAITNHGGVQPVKRYEGDSF  144
            L PTGTVTLLLADVE ST LW+  PE+M  A+  L+ TV+EAI +H GV+P+++ EGDSF
Sbjct  4    LLPTGTVTLLLADVEGSTRLWETRPEEMTAALVQLNKTVNEAIASHDGVRPLEQGEGDSF  63

Query  145  VAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEVQLRDEL-YVGPTINRTARLRDLAH  203
            VAAF RASDA ACAL+LQR  LAPIRLRIG+HTGE+QLRD+  Y GPTINRTARLRDLAH
Sbjct  64   VAAFARASDAVACALELQRAPLAPIRLRIGIHTGEIQLRDDANYAGPTINRTARLRDLAH  123

Query  204  GGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPRPEWVMQLCHPDIREKFPPLRTAK  263
            GGQ VLS  T  LV  RLP D WL DLG HPLR LPRPE V+Q+CHPD+R +FPPLR   
Sbjct  124  GGQTVLSGVTESLVVDRLPEDVWLADLGSHPLRDLPRPERVVQVCHPDLRNEFPPLRVRT  183

Query  264  SSPTSILPAQFTTFVGRRAQI  284
            +     LPAQ T+FVGR+AQ+
Sbjct  184  AVVAQNLPAQLTSFVGRQAQL  204


>gi|240170120|ref|ZP_04748779.1| regulatory protein, LuxR [Mycobacterium kansasii ATCC 12478]
Length=1010

 Score =  275 bits (702),  Expect = 8e-72, Method: Compositional matrix adjust.
 Identities = 139/205 (68%), Positives = 159/205 (78%), Gaps = 1/205 (0%)

Query  82   VSRLPPTGTVTLLLADVEESTHLWQMCPEDMATAIAHLDHTVSEAITNHGGVQPVKRYEG  141
            +S+L PTGTVTLLLADVE ST LW+  PE M  A+A L+ TV EAI  H GV+P+++ EG
Sbjct  1    MSKLLPTGTVTLLLADVEGSTRLWETQPETMTAALAQLNRTVDEAIAAHDGVRPLEQGEG  60

Query  142  DSFVAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEVQLRDEL-YVGPTINRTARLRD  200
            DSFVAAF RASDA ACAL+LQR  LAPIRLRIG+HTGE+QLRDE  Y GPTINRTARLRD
Sbjct  61   DSFVAAFARASDALACALELQRAPLAPIRLRIGIHTGEIQLRDEANYAGPTINRTARLRD  120

Query  201  LAHGGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPRPEWVMQLCHPDIREKFPPLR  260
            LAHGGQ VLS AT  LV   LP   WL DLG HPLR LPRPE V+QLCHPD+R  FPPLR
Sbjct  121  LAHGGQTVLSGATEPLVVDHLPDGVWLADLGNHPLRDLPRPERVVQLCHPDLRNDFPPLR  180

Query  261  TAKSSPTSILPAQFTTFVGRRAQIS  285
               +  +  LPAQ TTFVGR+A+++
Sbjct  181  IRNAGASHNLPAQLTTFVGRQAEMA  205


>gi|296169886|ref|ZP_06851498.1| LuxR family transcriptional regulator [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295895442|gb|EFG75144.1| LuxR family transcriptional regulator [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=1109

 Score =  269 bits (687),  Expect = 4e-70, Method: Compositional matrix adjust.
 Identities = 134/207 (65%), Positives = 158/207 (77%), Gaps = 1/207 (0%)

Query  80   LDVSRLPPTGTVTLLLADVEESTHLWQMCPEDMATAIAHLDHTVSEAITNHGGVQPVKRY  139
            L VS L PTGTVTLLLADVE ST LW+  PE M  A+A L+ TV++A+  H GV+P+++ 
Sbjct  27   LGVSELLPTGTVTLLLADVEGSTRLWETQPEQMTAALARLNKTVNDAVDAHAGVRPLEQG  86

Query  140  EGDSFVAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEVQLRDEL-YVGPTINRTARL  198
            EGDSFVAAF+RASDA ACAL +QR  LAPIRLRIG+HTGE+QLRD+  Y GPTINRTARL
Sbjct  87   EGDSFVAAFSRASDAVACALAVQRAPLAPIRLRIGIHTGEIQLRDDANYAGPTINRTARL  146

Query  199  RDLAHGGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPRPEWVMQLCHPDIREKFPP  258
            RDLAHGGQ VLS AT  +V  RLP   WL DLG +PLR LPRPE V+QLCHPD+  +FPP
Sbjct  147  RDLAHGGQTVLSGATESMVVDRLPDGVWLADLGSYPLRDLPRPERVVQLCHPDLANEFPP  206

Query  259  LRTAKSSPTSILPAQFTTFVGRRAQIS  285
            LR   +     LPAQ T+F+GR A+I 
Sbjct  207  LRVGSAVAAHNLPAQLTSFIGREAEIE  233


>gi|240173083|ref|ZP_04751741.1| LuxR family transcriptional regulator [Mycobacterium kansasii 
ATCC 12478]
Length=1102

 Score =  262 bits (669),  Expect = 5e-68, Method: Compositional matrix adjust.
 Identities = 133/204 (66%), Positives = 152/204 (75%), Gaps = 5/204 (2%)

Query  87   PTGTVTLLLADVEESTHLWQMCPEDMATAIAHLDHTVSEAITNHGGVQPVKRYEGDSFVA  146
            PTGTVTLLLAD+E ST LW   P +MA AI  LD  VSEAI  H GV+PV++ EGDSFV 
Sbjct  19   PTGTVTLLLADIEGSTRLWDTHPGEMAAAITRLDRVVSEAIAAHDGVRPVEQGEGDSFVI  78

Query  147  AFTRASDAAACALDLQRTSLAPIRLRIGLHTGEVQLR-----DELYVGPTINRTARLRDL  201
            AF RASDA ACA+ LQR  LAPIRLRIG+HTGEV+LR     D  YVGP INRTARLRDL
Sbjct  79   AFARASDAVACAVRLQRAPLAPIRLRIGVHTGEVRLRSQTGGDANYVGPAINRTARLRDL  138

Query  202  AHGGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPRPEWVMQLCHPDIREKFPPLRT  261
             HGGQ VLS  T DLV  +LP DAWL DLG +PLR LPRPE V+QLCHPD+R  FPPLRT
Sbjct  139  GHGGQTVLSGTTSDLVVDQLPTDAWLADLGSYPLRDLPRPERVVQLCHPDLRNDFPPLRT  198

Query  262  AKSSPTSILPAQFTTFVGRRAQIS  285
             ++  T  +P + T FVGR+ +I+
Sbjct  199  PETVATHNIPVELTNFVGRQPEIA  222


>gi|296168206|ref|ZP_06850198.1| LuxR family transcriptional regulator [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295896822|gb|EFG76452.1| LuxR family transcriptional regulator [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=1102

 Score =  259 bits (662),  Expect = 3e-67, Method: Compositional matrix adjust.
 Identities = 136/205 (67%), Positives = 156/205 (77%), Gaps = 2/205 (0%)

Query  82   VSRLPPTGTVTLLLADVEESTHLWQMCPEDMATAIAHLDHTVSEAITNHGGVQPVKRYEG  141
            VS LP TGTVTLLLADVE ST LW+   + M  A+  L+ TV++ +  HGGV+PV++ EG
Sbjct  24   VSELP-TGTVTLLLADVEGSTRLWETQSDTMTAALEQLNQTVNDLVAAHGGVRPVEQGEG  82

Query  142  DSFVAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEVQLRDE-LYVGPTINRTARLRD  200
            DSFV AF RASDA ACAL +Q + L PIR+RIGLHTGEVQLRD   Y GPTINRTARLRD
Sbjct  83   DSFVLAFARASDAVACALQIQLSVLPPIRIRIGLHTGEVQLRDAGNYAGPTINRTARLRD  142

Query  201  LAHGGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPRPEWVMQLCHPDIREKFPPLR  260
            LAHGGQ VLS AT  LV  RLPADAWL +LG HPLR LPRPE V+QL HP +R  FPPLR
Sbjct  143  LAHGGQTVLSGATEPLVIDRLPADAWLTELGVHPLRDLPRPERVVQLNHPGLRNDFPPLR  202

Query  261  TAKSSPTSILPAQFTTFVGRRAQIS  285
            TA ++  + LPAQ T+FVGR AQI 
Sbjct  203  TANNAVATHLPAQLTSFVGRGAQIG  227


>gi|120406868|ref|YP_956697.1| regulatory protein LuxR [Mycobacterium vanbaalenii PYR-1]
 gi|119959686|gb|ABM16691.1| regulatory protein, LuxR [Mycobacterium vanbaalenii PYR-1]
Length=1085

 Score =  258 bits (658),  Expect = 9e-67, Method: Compositional matrix adjust.
 Identities = 131/200 (66%), Positives = 152/200 (76%), Gaps = 1/200 (0%)

Query  82   VSRLPPTGTVTLLLADVEESTHLWQMCPEDMATAIAHLDHTVSEAITNHGGVQPVKRYEG  141
            +S L PTGTVTLLLADV+ ST LW+  PE M  A+A LD T+++ +++H GV+PV++ EG
Sbjct  1    MSELVPTGTVTLLLADVQGSTQLWETQPETMTAAVAQLDRTLTDLVSDHDGVRPVEQGEG  60

Query  142  DSFVAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEVQLRDE-LYVGPTINRTARLRD  200
            DSFV AFTRASDA ACAL LQR  LAPIRLRIG+HTGEV+LRDE  YVGPTINRTARLR+
Sbjct  61   DSFVVAFTRASDAVACALALQRAPLAPIRLRIGVHTGEVRLRDEGNYVGPTINRTARLRE  120

Query  201  LAHGGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPRPEWVMQLCHPDIREKFPPLR  260
            LAHGGQ VLS  T DLV   LP   WL DLG H LR LPRPE V+QLCH D+  +FPPLR
Sbjct  121  LAHGGQTVLSGTTSDLVADLLPDGGWLSDLGTHRLRDLPRPERVVQLCHADLSNEFPPLR  180

Query  261  TAKSSPTSILPAQFTTFVGR  280
              +      LPAQ T+FVGR
Sbjct  181  AREEIGVQRLPAQLTSFVGR  200


>gi|254819180|ref|ZP_05224181.1| regulatory protein, LuxR [Mycobacterium intracellulare ATCC 13950]
Length=689

 Score =  254 bits (650),  Expect = 8e-66, Method: Compositional matrix adjust.
 Identities = 131/199 (66%), Positives = 152/199 (77%), Gaps = 1/199 (0%)

Query  87   PTGTVTLLLADVEESTHLWQMCPEDMATAIAHLDHTVSEAITNHGGVQPVKRYEGDSFVA  146
            PTGTVTLLLADV+ ST LW   P +M  AIA LD T++  +  H G++PV++ EGDSFV 
Sbjct  6    PTGTVTLLLADVQGSTQLWGSQPREMTAAIAKLDQTLARLVGAHHGIRPVEQGEGDSFVI  65

Query  147  AFTRASDAAACALDLQRTSLAPIRLRIGLHTGEVQLRDE-LYVGPTINRTARLRDLAHGG  205
            AF+RASDA ACAL LQR  LAP+RLRIG+HTGEVQLRDE  YVGP INRTARLR+LAHGG
Sbjct  66   AFSRASDAVACALALQRAPLAPLRLRIGVHTGEVQLRDENNYVGPAINRTARLRELAHGG  125

Query  206  QVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPRPEWVMQLCHPDIREKFPPLRTAKSS  265
            Q VLS  TGDLV   L   AWL DLG H LR LPRPE V+QLCHPD+R +FPPLR  +S 
Sbjct  126  QTVLSGTTGDLVADTLADGAWLNDLGIHALRDLPRPERVVQLCHPDLRNEFPPLRHRESV  185

Query  266  PTSILPAQFTTFVGRRAQI  284
             +  LPAQ T+FVGR A++
Sbjct  186  VSQRLPAQLTSFVGRDAEM  204


>gi|183980157|ref|YP_001848448.1| LuxR family transcriptional regulator [Mycobacterium marinum 
M]
 gi|183173483|gb|ACC38593.1| transcriptional regulatory protein (LuxR- family) [Mycobacterium 
marinum M]
Length=1117

 Score =  254 bits (649),  Expect = 1e-65, Method: Compositional matrix adjust.
 Identities = 130/216 (61%), Positives = 156/216 (73%), Gaps = 4/216 (1%)

Query  74   LIANQGLDVSRLPPTGTVTLLLADVEESTHLWQMCPEDMATAIAHLDHTVSEAITNHGGV  133
            L+    +D+  L PTGTVTLLLADVE ST LWQ  PE M  A+AHLD  ++  +  H GV
Sbjct  16   LVDWSDVDMGELLPTGTVTLLLADVEGSTRLWQNQPEPMTAAVAHLDSVLATTVATHHGV  75

Query  134  QPVKRYEGDSFVAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEVQLRD----ELYVG  189
            +PV++ EGDSFV AF  A +A ACALDLQR+ L PIRLRIG+HTG++QLRD      Y+G
Sbjct  76   RPVEQGEGDSFVVAFASAREAIACALDLQRSPLGPIRLRIGVHTGDIQLRDPNDPTNYIG  135

Query  190  PTINRTARLRDLAHGGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPRPEWVMQLCH  249
            PTINRTAR+R+LAHGGQ V+S AT  LV  +LP  AWL DLG HPLR LPRPE VMQLCH
Sbjct  136  PTINRTARIRELAHGGQTVISGATQLLVVDQLPDGAWLADLGLHPLRDLPRPERVMQLCH  195

Query  250  PDIREKFPPLRTAKSSPTSILPAQFTTFVGRRAQIS  285
              ++  FPPLRT KS     +PA+ T FVGR AQ++
Sbjct  196  SGLQNDFPPLRTTKSIAVHRMPARLTRFVGRIAQMA  231


>gi|240169124|ref|ZP_04747783.1| transcriptional regulatory protein [Mycobacterium kansasii ATCC 
12478]
Length=1092

 Score =  248 bits (634),  Expect = 6e-64, Method: Compositional matrix adjust.
 Identities = 122/191 (64%), Positives = 144/191 (76%), Gaps = 1/191 (0%)

Query  96   ADVEESTHLWQMCPEDMATAIAHLDHTVSEAITNHGGVQPVKRYEGDSFVAAFTRASDAA  155
            AD+E ST LW   P  MA AI HLD  V+EA++ HGGV+PV++ EGDSFVAAF RA+DA 
Sbjct  21   ADIEGSTRLWHTQPAQMADAIKHLDQAVAEAVSAHGGVRPVEQGEGDSFVAAFGRAADAV  80

Query  156  ACALDLQRTSLAPIRLRIGLHTGEVQLRDEL-YVGPTINRTARLRDLAHGGQVVLSAATG  214
            ACAL LQR  L PIRLR+G+HTG+VQLRD+  YVGPTINR ARLRDLAHGGQ +LSA T 
Sbjct  81   ACALQLQRAQLPPIRLRVGIHTGDVQLRDDSNYVGPTINRAARLRDLAHGGQTLLSATTS  140

Query  215  DLVTGRLPADAWLVDLGRHPLRGLPRPEWVMQLCHPDIREKFPPLRTAKSSPTSILPAQF  274
            D+V   LPADAWL+DLG  PLR LPRPE V QLCHP +R +FP LR  K+     LP Q 
Sbjct  141  DIVIDELPADAWLIDLGIQPLRDLPRPERVAQLCHPQLRNEFPGLRAPKNIVNQRLPVQL  200

Query  275  TTFVGRRAQIS  285
            T+FVGR  +++
Sbjct  201  TSFVGREREMA  211


>gi|15839770|ref|NP_334807.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis 
CDC1551]
 gi|13879898|gb|AAK44621.1| transcriptional regulator, LuxR family [Mycobacterium tuberculosis 
CDC1551]
Length=1092

 Score =  246 bits (629),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 137/208 (66%), Positives = 149/208 (72%), Gaps = 1/208 (0%)

Query  79   GLDVSRLPPTGTVTLLLADVEESTHLWQMCPEDMATAIAHLDHTVSEAITNHGGVQPVKR  138
            G  +S+L P GTVTLLLADVE ST LW+  P+DM  A+A LD  VS  I  H GV+PV++
Sbjct  5    GAGMSKLLPRGTVTLLLADVEGSTWLWETHPDDMGAAVARLDKAVSGVIAAHDGVRPVEQ  64

Query  139  YEGDSFVAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEVQLRDE-LYVGPTINRTAR  197
             EGDSFV AF  ASDA A ALDLQR  LAPIRLRIG+HTGEV LRDE  Y GPTINRTAR
Sbjct  65   GEGDSFVLAFACASDAVAAALDLQRARLAPIRLRIGVHTGEVALRDEGNYAGPTINRTAR  124

Query  198  LRDLAHGGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPRPEWVMQLCHPDIREKFP  257
            LRDLAHGGQ VLS  T  LV  RLP  AWLVDLG H LR L RPE VMQLCHP++R  FP
Sbjct  125  LRDLAHGGQTVLSGVTESLVIDRLPDKAWLVDLGTHALRDLSRPERVMQLCHPELRIDFP  184

Query  258  PLRTAKSSPTSILPAQFTTFVGRRAQIS  285
            PLR A       LP   T FVGR AQI+
Sbjct  185  PLRVANDDVAHGLPVHLTRFVGRGAQIT  212


>gi|289756454|ref|ZP_06515832.1| transcriptional regulator [Mycobacterium tuberculosis T85]
 gi|289712018|gb|EFD76030.1| transcriptional regulator [Mycobacterium tuberculosis T85]
Length=943

 Score =  246 bits (628),  Expect = 3e-63, Method: Compositional matrix adjust.
 Identities = 137/208 (66%), Positives = 149/208 (72%), Gaps = 1/208 (0%)

Query  79   GLDVSRLPPTGTVTLLLADVEESTHLWQMCPEDMATAIAHLDHTVSEAITNHGGVQPVKR  138
            G  +S+L P GTVTLLLADVE ST LW+  P+DM  A+A LD  VS  I  H GV+PV++
Sbjct  5    GAGMSKLLPRGTVTLLLADVEGSTWLWETHPDDMGAAVARLDKAVSGVIAAHDGVRPVEQ  64

Query  139  YEGDSFVAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEVQLRDE-LYVGPTINRTAR  197
             EGDSFV AF  ASDA A ALDLQR  LAPIRLRIG+HTGEV LRDE  Y GPTINRTAR
Sbjct  65   GEGDSFVLAFACASDAVAAALDLQRARLAPIRLRIGVHTGEVALRDEGNYAGPTINRTAR  124

Query  198  LRDLAHGGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPRPEWVMQLCHPDIREKFP  257
            LRDLAHGGQ VLS  T  LV  RLP  AWLVDLG H LR L RPE VMQLCHP++R  FP
Sbjct  125  LRDLAHGGQTVLSGVTESLVIDRLPDKAWLVDLGTHALRDLSRPERVMQLCHPELRIDFP  184

Query  258  PLRTAKSSPTSILPAQFTTFVGRRAQIS  285
            PLR A       LP   T FVGR AQI+
Sbjct  185  PLRVANDDVAHGLPVHLTRFVGRGAQIT  212


>gi|289748870|ref|ZP_06508248.1| luxR family transcriptional regulator [Mycobacterium tuberculosis 
T92]
 gi|289689457|gb|EFD56886.1| luxR family transcriptional regulator [Mycobacterium tuberculosis 
T92]
Length=846

 Score =  246 bits (628),  Expect = 3e-63, Method: Compositional matrix adjust.
 Identities = 137/208 (66%), Positives = 149/208 (72%), Gaps = 1/208 (0%)

Query  79   GLDVSRLPPTGTVTLLLADVEESTHLWQMCPEDMATAIAHLDHTVSEAITNHGGVQPVKR  138
            G  +S+L P GTVTLLLADVE ST LW+  P+DM  A+A LD  VS  I  H GV+PV++
Sbjct  5    GAGMSKLLPRGTVTLLLADVEGSTWLWETHPDDMGAAVARLDKAVSGVIAAHDGVRPVEQ  64

Query  139  YEGDSFVAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEVQLRDE-LYVGPTINRTAR  197
             EGDSFV AF  ASDA A ALDLQR  LAPIRLRIG+HTGEV LRDE  Y GPTINRTAR
Sbjct  65   GEGDSFVLAFACASDAVAAALDLQRARLAPIRLRIGVHTGEVALRDEGNYAGPTINRTAR  124

Query  198  LRDLAHGGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPRPEWVMQLCHPDIREKFP  257
            LRDLAHGGQ VLS  T  LV  RLP  AWLVDLG H LR L RPE VMQLCHP++R  FP
Sbjct  125  LRDLAHGGQTVLSGVTESLVIDRLPDKAWLVDLGTHALRDLSRPERVMQLCHPELRIDFP  184

Query  258  PLRTAKSSPTSILPAQFTTFVGRRAQIS  285
            PLR A       LP   T FVGR AQI+
Sbjct  185  PLRVANDDVAHGLPVHLTRFVGRGAQIT  212


>gi|31791563|ref|NP_854056.1| LuxR/UHPA family transcriptional regulator [Mycobacterium bovis 
AF2122/97]
 gi|31617149|emb|CAD93256.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY LUXR/UHPA-FAMILY) 
[Mycobacterium bovis AF2122/97]
Length=1085

 Score =  245 bits (626),  Expect = 4e-63, Method: Compositional matrix adjust.
 Identities = 136/205 (67%), Positives = 148/205 (73%), Gaps = 1/205 (0%)

Query  82   VSRLPPTGTVTLLLADVEESTHLWQMCPEDMATAIAHLDHTVSEAITNHGGVQPVKRYEG  141
            +S+L P GTVTLLLADVE ST LW+  P+DM  A+A LD  VS  I  H GV+PV++ EG
Sbjct  1    MSKLLPRGTVTLLLADVEGSTWLWETHPDDMGAAVARLDKAVSGVIAAHDGVRPVEQGEG  60

Query  142  DSFVAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEVQLRDE-LYVGPTINRTARLRD  200
            DSFV AF  ASDA A ALDLQR  LAPIRLRIG+HTGEV LRDE  Y GPTINRTARLRD
Sbjct  61   DSFVLAFACASDAVAAALDLQRARLAPIRLRIGVHTGEVALRDEGNYAGPTINRTARLRD  120

Query  201  LAHGGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPRPEWVMQLCHPDIREKFPPLR  260
            LAHGGQ VLS  T  LV  RLP  AWLVDLG H LR L RPE VMQLCHP++R  FPPLR
Sbjct  121  LAHGGQTVLSGVTESLVIDRLPDKAWLVDLGTHALRDLSRPERVMQLCHPELRIDFPPLR  180

Query  261  TAKSSPTSILPAQFTTFVGRRAQIS  285
             A       LP   T FVGR AQI+
Sbjct  181  VANDDVAHGLPVHLTRFVGRGAQIT  205


>gi|254230743|ref|ZP_04924070.1| hypothetical protein TBCG_00379 [Mycobacterium tuberculosis C]
 gi|124599802|gb|EAY58812.1| hypothetical protein TBCG_00379 [Mycobacterium tuberculosis C]
Length=1090

 Score =  245 bits (626),  Expect = 5e-63, Method: Compositional matrix adjust.
 Identities = 136/205 (67%), Positives = 148/205 (73%), Gaps = 1/205 (0%)

Query  82   VSRLPPTGTVTLLLADVEESTHLWQMCPEDMATAIAHLDHTVSEAITNHGGVQPVKRYEG  141
            +S+L P GTVTLLLADVE ST LW+  P+DM  A+A LD  VS  I  H GV+PV++ EG
Sbjct  1    MSKLLPRGTVTLLLADVEGSTWLWETHPDDMGAAVARLDKAVSGVIAAHDGVRPVEQGEG  60

Query  142  DSFVAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEVQLRDE-LYVGPTINRTARLRD  200
            DSFV AF  ASDA A ALDLQR  LAPIRLRIG+HTGEV LRDE  Y GPTINRTARLRD
Sbjct  61   DSFVLAFACASDAVAAALDLQRARLAPIRLRIGVHTGEVALRDEGNYAGPTINRTARLRD  120

Query  201  LAHGGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPRPEWVMQLCHPDIREKFPPLR  260
            LAHGGQ VLS  T  LV  RLP  AWLVDLG H LR L RPE VMQLCHP++R  FPPLR
Sbjct  121  LAHGGQTVLSGVTESLVIDRLPDKAWLVDLGTHALRDLSRPERVMQLCHPELRIDFPPLR  180

Query  261  TAKSSPTSILPAQFTTFVGRRAQIS  285
             A       LP   T FVGR AQI+
Sbjct  181  VANDDVAHGLPVHLTRFVGRGAQIT  205


>gi|289445924|ref|ZP_06435668.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium tuberculosis 
CPHL_A]
 gi|289418882|gb|EFD16083.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium tuberculosis 
CPHL_A]
Length=1085

 Score =  245 bits (626),  Expect = 5e-63, Method: Compositional matrix adjust.
 Identities = 136/205 (67%), Positives = 148/205 (73%), Gaps = 1/205 (0%)

Query  82   VSRLPPTGTVTLLLADVEESTHLWQMCPEDMATAIAHLDHTVSEAITNHGGVQPVKRYEG  141
            +S+L P GTVTLLLADVE ST LW+  P+DM  A+A LD  VS  I  H GV+PV++ EG
Sbjct  1    MSKLLPRGTVTLLLADVEGSTWLWETHPDDMGAAVARLDKAVSGVIAAHDGVRPVEQGEG  60

Query  142  DSFVAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEVQLRDE-LYVGPTINRTARLRD  200
            DSFV AF  ASDA A ALDLQR  LAPIRLRIG+HTGEV LRDE  Y GPTINRTARLRD
Sbjct  61   DSFVLAFACASDAVAAALDLQRARLAPIRLRIGVHTGEVALRDEGNYAGPTINRTARLRD  120

Query  201  LAHGGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPRPEWVMQLCHPDIREKFPPLR  260
            LAHGGQ VLS  T  LV  RLP  AWLVDLG H LR L RPE VMQLCHP++R  FPPLR
Sbjct  121  LAHGGQTVLSGVTESLVIDRLPDKAWLVDLGTHALRDLSRPERVMQLCHPELRIDFPPLR  180

Query  261  TAKSSPTSILPAQFTTFVGRRAQIS  285
             A       LP   T FVGR AQI+
Sbjct  181  VANDDVAHGLPVHLTRFVGRGAQIT  205


>gi|167966904|ref|ZP_02549181.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis 
H37Ra]
Length=1085

 Score =  245 bits (626),  Expect = 5e-63, Method: Compositional matrix adjust.
 Identities = 136/205 (67%), Positives = 148/205 (73%), Gaps = 1/205 (0%)

Query  82   VSRLPPTGTVTLLLADVEESTHLWQMCPEDMATAIAHLDHTVSEAITNHGGVQPVKRYEG  141
            +S+L P GTVTLLLADVE ST LW+  P+DM  A+A LD  VS  I  H GV+PV++ EG
Sbjct  1    MSKLLPRGTVTLLLADVEGSTWLWETHPDDMGAAVARLDKAVSGVIAAHDGVRPVEQGEG  60

Query  142  DSFVAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEVQLRDE-LYVGPTINRTARLRD  200
            DSFV AF  ASDA A ALDLQR  LAPIRLRIG+HTGEV LRDE  Y GPTINRTARLRD
Sbjct  61   DSFVLAFACASDAVAAALDLQRARLAPIRLRIGVHTGEVALRDEGNYAGPTINRTARLRD  120

Query  201  LAHGGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPRPEWVMQLCHPDIREKFPPLR  260
            LAHGGQ VLS  T  LV  RLP  AWLVDLG H LR L RPE VMQLCHP++R  FPPLR
Sbjct  121  LAHGGQTVLSGVTESLVIDRLPDKAWLVDLGTHALRDLSRPERVMQLCHPELRIDFPPLR  180

Query  261  TAKSSPTSILPAQFTTFVGRRAQIS  285
             A       LP   T FVGR AQI+
Sbjct  181  VANDDVAHGLPVHLTRFVGRGAQIT  205


>gi|289752415|ref|ZP_06511793.1| LuxR/UHPA family transcriptional regulator [Mycobacterium tuberculosis 
EAS054]
 gi|289693002|gb|EFD60431.1| LuxR/UHPA family transcriptional regulator [Mycobacterium tuberculosis 
EAS054]
Length=1085

 Score =  245 bits (626),  Expect = 5e-63, Method: Compositional matrix adjust.
 Identities = 136/205 (67%), Positives = 148/205 (73%), Gaps = 1/205 (0%)

Query  82   VSRLPPTGTVTLLLADVEESTHLWQMCPEDMATAIAHLDHTVSEAITNHGGVQPVKRYEG  141
            +S+L P GTVTLLLADVE ST LW+  P+DM  A+A LD  VS  I  H GV+PV++ EG
Sbjct  1    MSKLLPRGTVTLLLADVEGSTWLWETHPDDMGAAVARLDKAVSGVIAAHDGVRPVEQGEG  60

Query  142  DSFVAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEVQLRDE-LYVGPTINRTARLRD  200
            DSFV AF  ASDA A ALDLQR  LAPIRLRIG+HTGEV LRDE  Y GPTINRTARLRD
Sbjct  61   DSFVLAFACASDAVAAALDLQRARLAPIRLRIGVHTGEVALRDEGNYAGPTINRTARLRD  120

Query  201  LAHGGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPRPEWVMQLCHPDIREKFPPLR  260
            LAHGGQ VLS  T  LV  RLP  AWLVDLG H LR L RPE VMQLCHP++R  FPPLR
Sbjct  121  LAHGGQTVLSGVTESLVIDRLPDKAWLVDLGTHALRDLSRPERVMQLCHPELRIDFPPLR  180

Query  261  TAKSSPTSILPAQFTTFVGRRAQIS  285
             A       LP   T FVGR AQI+
Sbjct  181  VANDDVAHGLPVHLTRFVGRGAQIT  205


>gi|15607527|ref|NP_214900.1| LuxR/UHPA family transcriptional regulator [Mycobacterium tuberculosis 
H37Rv]
 gi|121636299|ref|YP_976522.1| LuxR family transcriptional regulator [Mycobacterium bovis BCG 
str. Pasteur 1173P2]
 gi|148660152|ref|YP_001281675.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis 
H37Ra]
 43 more sequence titles
 Length=1085

 Score =  245 bits (626),  Expect = 5e-63, Method: Compositional matrix adjust.
 Identities = 136/205 (67%), Positives = 148/205 (73%), Gaps = 1/205 (0%)

Query  82   VSRLPPTGTVTLLLADVEESTHLWQMCPEDMATAIAHLDHTVSEAITNHGGVQPVKRYEG  141
            +S+L P GTVTLLLADVE ST LW+  P+DM  A+A LD  VS  I  H GV+PV++ EG
Sbjct  1    MSKLLPRGTVTLLLADVEGSTWLWETHPDDMGAAVARLDKAVSGVIAAHDGVRPVEQGEG  60

Query  142  DSFVAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEVQLRDE-LYVGPTINRTARLRD  200
            DSFV AF  ASDA A ALDLQR  LAPIRLRIG+HTGEV LRDE  Y GPTINRTARLRD
Sbjct  61   DSFVLAFACASDAVAAALDLQRARLAPIRLRIGVHTGEVALRDEGNYAGPTINRTARLRD  120

Query  201  LAHGGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPRPEWVMQLCHPDIREKFPPLR  260
            LAHGGQ VLS  T  LV  RLP  AWLVDLG H LR L RPE VMQLCHP++R  FPPLR
Sbjct  121  LAHGGQTVLSGVTESLVIDRLPDKAWLVDLGTHALRDLSRPERVMQLCHPELRIDFPPLR  180

Query  261  TAKSSPTSILPAQFTTFVGRRAQIS  285
             A       LP   T FVGR AQI+
Sbjct  181  VANDDVAHGLPVHLTRFVGRGAQIT  205


>gi|289744083|ref|ZP_06503461.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis 
02_1987]
 gi|289684611|gb|EFD52099.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis 
02_1987]
Length=1085

 Score =  245 bits (626),  Expect = 5e-63, Method: Compositional matrix adjust.
 Identities = 136/205 (67%), Positives = 148/205 (73%), Gaps = 1/205 (0%)

Query  82   VSRLPPTGTVTLLLADVEESTHLWQMCPEDMATAIAHLDHTVSEAITNHGGVQPVKRYEG  141
            +S+L P GTVTLLLADVE ST LW+  P+DM  A+A LD  VS  I  H GV+PV++ EG
Sbjct  1    MSKLLPRGTVTLLLADVEGSTWLWETHPDDMGAAVARLDKAVSGVIAAHDGVRPVEQGEG  60

Query  142  DSFVAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEVQLRDE-LYVGPTINRTARLRD  200
            DSFV AF  ASDA A ALDLQR  LAPIRLRIG+HTGEV LRDE  Y GPTINRTARLRD
Sbjct  61   DSFVLAFACASDAVAAALDLQRARLAPIRLRIGVHTGEVALRDEGNYAGPTINRTARLRD  120

Query  201  LAHGGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPRPEWVMQLCHPDIREKFPPLR  260
            LAHGGQ VLS  T  LV  RLP  AWLVDLG H LR L RPE VMQLCHP++R  FPPLR
Sbjct  121  LAHGGQTVLSGVTESLVIDRLPDKAWLVDLGTHALRDLSRPERVMQLCHPELRIDFPPLR  180

Query  261  TAKSSPTSILPAQFTTFVGRRAQIS  285
             A       LP   T FVGR AQI+
Sbjct  181  VANDDVAHGLPVHLTRFVGRGAQIT  205


>gi|148821582|ref|YP_001286336.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis 
F11]
 gi|148720109|gb|ABR04734.1| hypothetical transcriptional regulatory protein, luxR/uhpA-family 
[Mycobacterium tuberculosis F11]
Length=1085

 Score =  245 bits (625),  Expect = 6e-63, Method: Compositional matrix adjust.
 Identities = 136/205 (67%), Positives = 148/205 (73%), Gaps = 1/205 (0%)

Query  82   VSRLPPTGTVTLLLADVEESTHLWQMCPEDMATAIAHLDHTVSEAITNHGGVQPVKRYEG  141
            +S+L P GTVTLLLADVE ST LW+  P+DM  A+A LD  VS  I  H GV+PV++ EG
Sbjct  1    MSKLLPRGTVTLLLADVEGSTWLWETHPDDMGAAVARLDKAVSGVIAAHDGVRPVEQGEG  60

Query  142  DSFVAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEVQLRDE-LYVGPTINRTARLRD  200
            DSFV AF  ASDA A ALDLQR  LAPIRLRIG+HTGEV LRDE  Y GPTINRTARLRD
Sbjct  61   DSFVLAFACASDAVAAALDLQRARLAPIRLRIGVHTGEVALRDEGNYAGPTINRTARLRD  120

Query  201  LAHGGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPRPEWVMQLCHPDIREKFPPLR  260
            LAHGGQ VLS  T  LV  RLP  AWLVDLG H LR L RPE VMQLCHP++R  FPPLR
Sbjct  121  LAHGGQTVLSGVTESLVIDRLPDKAWLVDLGTHALRDLSRPERVMQLCHPELRIDFPPLR  180

Query  261  TAKSSPTSILPAQFTTFVGRRAQIS  285
             A       LP   T FVGR AQI+
Sbjct  181  VANDDVAHGLPVHLTRFVGRGAQIT  205


>gi|289441765|ref|ZP_06431509.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium tuberculosis 
T46]
 gi|289414684|gb|EFD11924.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium tuberculosis 
T46]
Length=791

 Score =  244 bits (623),  Expect = 1e-62, Method: Compositional matrix adjust.
 Identities = 136/205 (67%), Positives = 148/205 (73%), Gaps = 1/205 (0%)

Query  82   VSRLPPTGTVTLLLADVEESTHLWQMCPEDMATAIAHLDHTVSEAITNHGGVQPVKRYEG  141
            +S+L P GTVTLLLADVE ST LW+  P+DM  A+A LD  VS  I  H GV+PV++ EG
Sbjct  1    MSKLLPRGTVTLLLADVEGSTWLWETHPDDMGAAVARLDKAVSGVIAAHDGVRPVEQGEG  60

Query  142  DSFVAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEVQLRDE-LYVGPTINRTARLRD  200
            DSFV AF  ASDA A ALDLQR  LAPIRLRIG+HTGEV LRDE  Y GPTINRTARLRD
Sbjct  61   DSFVLAFACASDAVAAALDLQRARLAPIRLRIGVHTGEVALRDEGNYAGPTINRTARLRD  120

Query  201  LAHGGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPRPEWVMQLCHPDIREKFPPLR  260
            LAHGGQ VLS  T  LV  RLP  AWLVDLG H LR L RPE VMQLCHP++R  FPPLR
Sbjct  121  LAHGGQTVLSGVTESLVIDRLPDKAWLVDLGTHALRDLSRPERVMQLCHPELRIDFPPLR  180

Query  261  TAKSSPTSILPAQFTTFVGRRAQIS  285
             A       LP   T FVGR AQI+
Sbjct  181  VANDDVAHGLPVHLTRFVGRGAQIT  205


>gi|308231538|ref|ZP_07663879.1| hypothetical protein TMAG_01645 [Mycobacterium tuberculosis SUMu001]
 gi|308216985|gb|EFO76384.1| hypothetical protein TMAG_01645 [Mycobacterium tuberculosis SUMu001]
Length=317

 Score =  242 bits (618),  Expect = 4e-62, Method: Compositional matrix adjust.
 Identities = 136/205 (67%), Positives = 148/205 (73%), Gaps = 1/205 (0%)

Query  82   VSRLPPTGTVTLLLADVEESTHLWQMCPEDMATAIAHLDHTVSEAITNHGGVQPVKRYEG  141
            +S+L P GTVTLLLADVE ST LW+  P+DM  A+A LD  VS  I  H GV+PV++ EG
Sbjct  1    MSKLLPRGTVTLLLADVEGSTWLWETHPDDMGAAVARLDKAVSGVIAAHDGVRPVEQGEG  60

Query  142  DSFVAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEVQLRDE-LYVGPTINRTARLRD  200
            DSFV AF  ASDA A ALDLQR  LAPIRLRIG+HTGEV LRDE  Y GPTINRTARLRD
Sbjct  61   DSFVLAFACASDAVAAALDLQRARLAPIRLRIGVHTGEVALRDEGNYAGPTINRTARLRD  120

Query  201  LAHGGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPRPEWVMQLCHPDIREKFPPLR  260
            LAHGGQ VLS  T  LV  RLP  AWLVDLG H LR L RPE VMQLCHP++R  FPPLR
Sbjct  121  LAHGGQTVLSGVTESLVIDRLPDKAWLVDLGTHALRDLSRPERVMQLCHPELRIDFPPLR  180

Query  261  TAKSSPTSILPAQFTTFVGRRAQIS  285
             A       LP   T FVGR AQI+
Sbjct  181  VANDDVAHGLPVHLTRFVGRGAQIT  205


>gi|289572971|ref|ZP_06453198.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium tuberculosis 
K85]
 gi|289537402|gb|EFD41980.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium tuberculosis 
K85]
Length=486

 Score =  242 bits (618),  Expect = 5e-62, Method: Compositional matrix adjust.
 Identities = 136/205 (67%), Positives = 148/205 (73%), Gaps = 1/205 (0%)

Query  82   VSRLPPTGTVTLLLADVEESTHLWQMCPEDMATAIAHLDHTVSEAITNHGGVQPVKRYEG  141
            +S+L P GTVTLLLADVE ST LW+  P+DM  A+A LD  VS  I  H GV+PV++ EG
Sbjct  1    MSKLLPRGTVTLLLADVEGSTWLWETHPDDMGAAVARLDKAVSGVIAAHDGVRPVEQGEG  60

Query  142  DSFVAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEVQLRDE-LYVGPTINRTARLRD  200
            DSFV AF  ASDA A ALDLQR  LAPIRLRIG+HTGEV LRDE  Y GPTINRTARLRD
Sbjct  61   DSFVLAFACASDAVAAALDLQRARLAPIRLRIGVHTGEVALRDEGNYAGPTINRTARLRD  120

Query  201  LAHGGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPRPEWVMQLCHPDIREKFPPLR  260
            LAHGGQ VLS  T  LV  RLP  AWLVDLG H LR L RPE VMQLCHP++R  FPPLR
Sbjct  121  LAHGGQTVLSGVTESLVIDRLPDKAWLVDLGTHALRDLSRPERVMQLCHPELRIDFPPLR  180

Query  261  TAKSSPTSILPAQFTTFVGRRAQIS  285
             A       LP   T FVGR AQI+
Sbjct  181  VANDDVAHGLPVHLTRFVGRGAQIT  205


>gi|121638369|ref|YP_978593.1| LuxR family transcriptional regulator [Mycobacterium bovis BCG 
str. Pasteur 1173P2]
 gi|224990863|ref|YP_002645550.1| putative transcriptional regulatory protein [Mycobacterium bovis 
BCG str. Tokyo 172]
 gi|121494017|emb|CAL72495.1| Probable transcriptional regulatory protein (luxR-family) [Mycobacterium 
bovis BCG str. Pasteur 1173P2]
 gi|224773976|dbj|BAH26782.1| putative transcriptional regulatory protein [Mycobacterium bovis 
BCG str. Tokyo 172]
 gi|341602407|emb|CCC65083.1| probable transcriptional regulatory protein (luxR-family) [Mycobacterium 
bovis BCG str. Moreau RDJ]
Length=1137

 Score =  228 bits (582),  Expect = 7e-58, Method: Compositional matrix adjust.
 Identities = 128/207 (62%), Positives = 145/207 (71%), Gaps = 7/207 (3%)

Query  82   VSRLPPTGTVTLLLADVEESTHLWQMCPEDM--ATAIAHLDHTVSEAITNHGGVQPVKRY  139
            VS L PTGTVTLLLAD+E +THL    P      TAIA LD T++E +  H GV PV++ 
Sbjct  48   VSELVPTGTVTLLLADIEGATHL----PGSQLDTTAIAKLDRTLTELVREHRGVCPVEQG  103

Query  140  EGDSFVAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEVQLRDELY-VGPTINRTARL  198
            EGDSF+ AF RASDA ACAL LQR  LAPIRLRIG+HTGEV   DE   VGPTI+RTARL
Sbjct  104  EGDSFLVAFARASDAVACALGLQRAPLAPIRLRIGMHTGEVSSPDEGNCVGPTIDRTARL  163

Query  199  RDLAHGGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPRPEWVMQLCHPDIREKFPP  258
            R+LAHGGQ VLS  T DLV   LP DAWL DLG + L  LPRPE V+QLCHPD+   FPP
Sbjct  164  RELAHGGQTVLSGTTSDLVADLLPKDAWLNDLGTYRLDDLPRPERVVQLCHPDLHNAFPP  223

Query  259  LRTAKSSPTSILPAQFTTFVGRRAQIS  285
            LRT K      LPAQ T  VGR  +++
Sbjct  224  LRTRKVVGAHCLPAQLTRLVGRVDEVA  250


>gi|15609625|ref|NP_217004.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis 
H37Rv]
 gi|31793667|ref|NP_856160.1| LuxR family transcriptional regulator [Mycobacterium bovis AF2122/97]
 gi|148662323|ref|YP_001283846.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis 
H37Ra]
 14 more sequence titles
 Length=1137

 Score =  228 bits (582),  Expect = 7e-58, Method: Compositional matrix adjust.
 Identities = 128/207 (62%), Positives = 145/207 (71%), Gaps = 7/207 (3%)

Query  82   VSRLPPTGTVTLLLADVEESTHLWQMCPEDM--ATAIAHLDHTVSEAITNHGGVQPVKRY  139
            VS L PTGTVTLLLAD+E +THL    P      TAIA LD T++E +  H GV PV++ 
Sbjct  48   VSELVPTGTVTLLLADIEGATHL----PGSQLDTTAIAKLDRTLTELVREHRGVCPVEQG  103

Query  140  EGDSFVAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEVQLRDELY-VGPTINRTARL  198
            EGDSF+ AF RASDA ACAL LQR  LAPIRLRIG+HTGEV   DE   VGPTI+RTARL
Sbjct  104  EGDSFLVAFARASDAVACALGLQRAPLAPIRLRIGMHTGEVSSPDEGNCVGPTIDRTARL  163

Query  199  RDLAHGGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPRPEWVMQLCHPDIREKFPP  258
            R+LAHGGQ VLS  T DLV   LP DAWL DLG + L  LPRPE V+QLCHPD+   FPP
Sbjct  164  RELAHGGQTVLSGTTSDLVADLLPKDAWLNDLGTYRLDDLPRPERVVQLCHPDLHNAFPP  223

Query  259  LRTAKSSPTSILPAQFTTFVGRRAQIS  285
            LRT K      LPAQ T  VGR  +++
Sbjct  224  LRTRKVVGAHCLPAQLTRLVGRVDEVA  250


>gi|339295373|gb|AEJ47484.1| putative transcriptional regulator, LuxR family [Mycobacterium 
tuberculosis CCDC5079]
 gi|339298993|gb|AEJ51103.1| putative transcriptional regulator, LuxR family [Mycobacterium 
tuberculosis CCDC5180]
Length=1109

 Score =  228 bits (581),  Expect = 8e-58, Method: Compositional matrix adjust.
 Identities = 128/207 (62%), Positives = 145/207 (71%), Gaps = 7/207 (3%)

Query  82   VSRLPPTGTVTLLLADVEESTHLWQMCPEDM--ATAIAHLDHTVSEAITNHGGVQPVKRY  139
            VS L PTGTVTLLLAD+E +THL    P      TAIA LD T++E +  H GV PV++ 
Sbjct  20   VSELVPTGTVTLLLADIEGATHL----PGSQLDTTAIAKLDRTLTELVREHRGVCPVEQG  75

Query  140  EGDSFVAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEVQLRDELY-VGPTINRTARL  198
            EGDSF+ AF RASDA ACAL LQR  LAPIRLRIG+HTGEV   DE   VGPTI+RTARL
Sbjct  76   EGDSFLVAFARASDAVACALGLQRAPLAPIRLRIGMHTGEVSSPDEGNCVGPTIDRTARL  135

Query  199  RDLAHGGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPRPEWVMQLCHPDIREKFPP  258
            R+LAHGGQ VLS  T DLV   LP DAWL DLG + L  LPRPE V+QLCHPD+   FPP
Sbjct  136  RELAHGGQTVLSGTTSDLVADLLPKDAWLNDLGTYRLDDLPRPERVVQLCHPDLHNAFPP  195

Query  259  LRTAKSSPTSILPAQFTTFVGRRAQIS  285
            LRT K      LPAQ T  VGR  +++
Sbjct  196  LRTRKVVGAHCLPAQLTRLVGRVDEVA  222


>gi|289575185|ref|ZP_06455412.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis 
K85]
 gi|289539616|gb|EFD44194.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis 
K85]
Length=1137

 Score =  228 bits (581),  Expect = 8e-58, Method: Compositional matrix adjust.
 Identities = 128/207 (62%), Positives = 145/207 (71%), Gaps = 7/207 (3%)

Query  82   VSRLPPTGTVTLLLADVEESTHLWQMCPEDM--ATAIAHLDHTVSEAITNHGGVQPVKRY  139
            VS L PTGTVTLLLAD+E +THL    P      TAIA LD T++E +  H GV PV++ 
Sbjct  48   VSELVPTGTVTLLLADIEGATHL----PGSQLDTTAIAKLDRTLTELVREHRGVCPVEQG  103

Query  140  EGDSFVAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEVQLRDELY-VGPTINRTARL  198
            EGDSF+ AF RASDA ACAL LQR  LAPIRLRIG+HTGEV   DE   VGPTI+RTARL
Sbjct  104  EGDSFLVAFARASDAVACALGLQRAPLAPIRLRIGMHTGEVSSPDEGNCVGPTIDRTARL  163

Query  199  RDLAHGGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPRPEWVMQLCHPDIREKFPP  258
            R+LAHGGQ VLS  T DLV   LP DAWL DLG + L  LPRPE V+QLCHPD+   FPP
Sbjct  164  RELAHGGQTVLSGTTSDLVADLLPKDAWLNDLGTYRLDDLPRPERVVQLCHPDLHNAFPP  223

Query  259  LRTAKSSPTSILPAQFTTFVGRRAQIS  285
            LRT K      LPAQ T  VGR  +++
Sbjct  224  LRTRKVVGAHCLPAQLTRLVGRVDEVA  250


>gi|339632514|ref|YP_004724156.1| LuxR family transcriptional regulator [Mycobacterium africanum 
GM041182]
 gi|339331870|emb|CCC27573.1| putative transcriptional regulatory protein (LUXR-family) [Mycobacterium 
africanum GM041182]
Length=1137

 Score =  228 bits (581),  Expect = 8e-58, Method: Compositional matrix adjust.
 Identities = 128/207 (62%), Positives = 145/207 (71%), Gaps = 7/207 (3%)

Query  82   VSRLPPTGTVTLLLADVEESTHLWQMCPEDM--ATAIAHLDHTVSEAITNHGGVQPVKRY  139
            VS L PTGTVTLLLAD+E +THL    P      TAIA LD T++E +  H GV PV++ 
Sbjct  48   VSELVPTGTVTLLLADIEGATHL----PGSQLDTTAIAKLDRTLTELVREHRGVCPVEQG  103

Query  140  EGDSFVAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEVQLRDELY-VGPTINRTARL  198
            EGDSF+ AF RASDA ACAL LQR  LAPIRLRIG+HTGEV   DE   VGPTI+RTARL
Sbjct  104  EGDSFLVAFARASDAVACALGLQRAPLAPIRLRIGMHTGEVSSPDEGNCVGPTIDRTARL  163

Query  199  RDLAHGGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPRPEWVMQLCHPDIREKFPP  258
            R+LAHGGQ VLS  T DLV   LP DAWL DLG + L  LPRPE V+QLCHPD+   FPP
Sbjct  164  RELAHGGQTVLSGTTSDLVADLLPKDAWLNDLGTYRLDDLPRPERVVQLCHPDLHNAFPP  223

Query  259  LRTAKSSPTSILPAQFTTFVGRRAQIS  285
            LRT K      LPAQ T  VGR  +++
Sbjct  224  LRTRKVVGAHCLPAQLTRLVGRVDEVA  250


>gi|294994407|ref|ZP_06800098.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis 
210]
 gi|326904100|gb|EGE51033.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis 
W-148]
Length=1137

 Score =  228 bits (581),  Expect = 8e-58, Method: Compositional matrix adjust.
 Identities = 128/207 (62%), Positives = 145/207 (71%), Gaps = 7/207 (3%)

Query  82   VSRLPPTGTVTLLLADVEESTHLWQMCPEDM--ATAIAHLDHTVSEAITNHGGVQPVKRY  139
            VS L PTGTVTLLLAD+E +THL    P      TAIA LD T++E +  H GV PV++ 
Sbjct  48   VSELVPTGTVTLLLADIEGATHL----PGSQLDTTAIAKLDRTLTELVREHRGVCPVEQG  103

Query  140  EGDSFVAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEVQLRDELY-VGPTINRTARL  198
            EGDSF+ AF RASDA ACAL LQR  LAPIRLRIG+HTGEV   DE   VGPTI+RTARL
Sbjct  104  EGDSFLVAFARASDAVACALGLQRAPLAPIRLRIGMHTGEVSSPDEGNCVGPTIDRTARL  163

Query  199  RDLAHGGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPRPEWVMQLCHPDIREKFPP  258
            R+LAHGGQ VLS  T DLV   LP DAWL DLG + L  LPRPE V+QLCHPD+   FPP
Sbjct  164  RELAHGGQTVLSGTTSDLVADLLPKDAWLNDLGTYRLDDLPRPERVVQLCHPDLHNAFPP  223

Query  259  LRTAKSSPTSILPAQFTTFVGRRAQIS  285
            LRT K      LPAQ T  VGR  +++
Sbjct  224  LRTRKVVGAHCLPAQLTRLVGRVDEVA  250


>gi|308232152|ref|ZP_07415096.2| putative transcriptional regulator, LuxR family [Mycobacterium 
tuberculosis SUMu001]
 gi|308371029|ref|ZP_07423604.2| putative transcriptional regulator, LuxR family [Mycobacterium 
tuberculosis SUMu003]
 gi|308373427|ref|ZP_07432269.2| putative transcriptional regulator, LuxR family [Mycobacterium 
tuberculosis SUMu005]
 gi|308374593|ref|ZP_07436663.2| putative transcriptional regulator, LuxR family [Mycobacterium 
tuberculosis SUMu006]
 gi|308214848|gb|EFO74247.1| putative transcriptional regulator, LuxR family [Mycobacterium 
tuberculosis SUMu001]
 gi|308330043|gb|EFP18894.1| putative transcriptional regulator, LuxR family [Mycobacterium 
tuberculosis SUMu003]
 gi|308337687|gb|EFP26538.1| putative transcriptional regulator, LuxR family [Mycobacterium 
tuberculosis SUMu005]
 gi|308341368|gb|EFP30219.1| putative transcriptional regulator, LuxR family [Mycobacterium 
tuberculosis SUMu006]
Length=1109

 Score =  228 bits (581),  Expect = 9e-58, Method: Compositional matrix adjust.
 Identities = 128/207 (62%), Positives = 145/207 (71%), Gaps = 7/207 (3%)

Query  82   VSRLPPTGTVTLLLADVEESTHLWQMCPEDM--ATAIAHLDHTVSEAITNHGGVQPVKRY  139
            VS L PTGTVTLLLAD+E +THL    P      TAIA LD T++E +  H GV PV++ 
Sbjct  20   VSELVPTGTVTLLLADIEGATHL----PGSQLDTTAIAKLDRTLTELVREHRGVCPVEQG  75

Query  140  EGDSFVAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEVQLRDELY-VGPTINRTARL  198
            EGDSF+ AF RASDA ACAL LQR  LAPIRLRIG+HTGEV   DE   VGPTI+RTARL
Sbjct  76   EGDSFLVAFARASDAVACALGLQRAPLAPIRLRIGMHTGEVSSPDEGNCVGPTIDRTARL  135

Query  199  RDLAHGGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPRPEWVMQLCHPDIREKFPP  258
            R+LAHGGQ VLS  T DLV   LP DAWL DLG + L  LPRPE V+QLCHPD+   FPP
Sbjct  136  RELAHGGQTVLSGTTSDLVADLLPKDAWLNDLGTYRLDDLPRPERVVQLCHPDLHNAFPP  195

Query  259  LRTAKSSPTSILPAQFTTFVGRRAQIS  285
            LRT K      LPAQ T  VGR  +++
Sbjct  196  LRTRKVVGAHCLPAQLTRLVGRVDEVA  222


>gi|15842015|ref|NP_337052.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis 
CDC1551]
 gi|289746269|ref|ZP_06505647.1| transcriptional regulator, luxR family [Mycobacterium tuberculosis 
02_1987]
 gi|308372247|ref|ZP_07427963.2| putative transcriptional regulator, LuxR family [Mycobacterium 
tuberculosis SUMu004]
 6 more sequence titles
 Length=1113

 Score =  228 bits (581),  Expect = 9e-58, Method: Compositional matrix adjust.
 Identities = 128/207 (62%), Positives = 145/207 (71%), Gaps = 7/207 (3%)

Query  82   VSRLPPTGTVTLLLADVEESTHLWQMCPEDM--ATAIAHLDHTVSEAITNHGGVQPVKRY  139
            VS L PTGTVTLLLAD+E +THL    P      TAIA LD T++E +  H GV PV++ 
Sbjct  24   VSELVPTGTVTLLLADIEGATHL----PGSQLDTTAIAKLDRTLTELVREHRGVCPVEQG  79

Query  140  EGDSFVAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEVQLRDELY-VGPTINRTARL  198
            EGDSF+ AF RASDA ACAL LQR  LAPIRLRIG+HTGEV   DE   VGPTI+RTARL
Sbjct  80   EGDSFLVAFARASDAVACALGLQRAPLAPIRLRIGMHTGEVSSPDEGNCVGPTIDRTARL  139

Query  199  RDLAHGGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPRPEWVMQLCHPDIREKFPP  258
            R+LAHGGQ VLS  T DLV   LP DAWL DLG + L  LPRPE V+QLCHPD+   FPP
Sbjct  140  RELAHGGQTVLSGTTSDLVADLLPKDAWLNDLGTYRLDDLPRPERVVQLCHPDLHNAFPP  199

Query  259  LRTAKSSPTSILPAQFTTFVGRRAQIS  285
            LRT K      LPAQ T  VGR  +++
Sbjct  200  LRTRKVVGAHCLPAQLTRLVGRVDEVA  226


>gi|308380381|ref|ZP_07669177.1| putative transcriptional regulator, LuxR family [Mycobacterium 
tuberculosis SUMu011]
 gi|308361672|gb|EFP50523.1| putative transcriptional regulator, LuxR family [Mycobacterium 
tuberculosis SUMu011]
Length=1199

 Score =  228 bits (580),  Expect = 1e-57, Method: Compositional matrix adjust.
 Identities = 128/207 (62%), Positives = 145/207 (71%), Gaps = 7/207 (3%)

Query  82   VSRLPPTGTVTLLLADVEESTHLWQMCPEDM--ATAIAHLDHTVSEAITNHGGVQPVKRY  139
            VS L PTGTVTLLLAD+E +THL    P      TAIA LD T++E +  H GV PV++ 
Sbjct  110  VSELVPTGTVTLLLADIEGATHL----PGSQLDTTAIAKLDRTLTELVREHRGVCPVEQG  165

Query  140  EGDSFVAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEVQLRDELY-VGPTINRTARL  198
            EGDSF+ AF RASDA ACAL LQR  LAPIRLRIG+HTGEV   DE   VGPTI+RTARL
Sbjct  166  EGDSFLVAFARASDAVACALGLQRAPLAPIRLRIGMHTGEVSSPDEGNCVGPTIDRTARL  225

Query  199  RDLAHGGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPRPEWVMQLCHPDIREKFPP  258
            R+LAHGGQ VLS  T DLV   LP DAWL DLG + L  LPRPE V+QLCHPD+   FPP
Sbjct  226  RELAHGGQTVLSGTTSDLVADLLPKDAWLNDLGTYRLDDLPRPERVVQLCHPDLHNAFPP  285

Query  259  LRTAKSSPTSILPAQFTTFVGRRAQIS  285
            LRT K      LPAQ T  VGR  +++
Sbjct  286  LRTRKVVGAHCLPAQLTRLVGRVDEVA  312


>gi|289444015|ref|ZP_06433759.1| probable transcriptional regulatory protein [Mycobacterium tuberculosis 
T46]
 gi|289416934|gb|EFD14174.1| probable transcriptional regulatory protein [Mycobacterium tuberculosis 
T46]
Length=474

 Score =  227 bits (578),  Expect = 2e-57, Method: Compositional matrix adjust.
 Identities = 127/205 (62%), Positives = 145/205 (71%), Gaps = 3/205 (1%)

Query  82   VSRLPPTGTVTLLLADVEESTHLWQMCPEDMATAIAHLDHTVSEAITNHGGVQPVKRYEG  141
            VS L PTGTVTLLLAD+E +THL     +   TAIA LD T++E +  H GV PV++ EG
Sbjct  24   VSELVPTGTVTLLLADIEGATHLPGSQLD--TTAIAKLDRTLTELVREHRGVCPVEQGEG  81

Query  142  DSFVAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEVQLRDELY-VGPTINRTARLRD  200
            DSF+ AF RASDA ACAL LQR  LAPIRLRIG+HTGEV   DE   VGPTI+RTARLR+
Sbjct  82   DSFLVAFARASDAVACALGLQRAPLAPIRLRIGMHTGEVSSPDEGNCVGPTIDRTARLRE  141

Query  201  LAHGGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPRPEWVMQLCHPDIREKFPPLR  260
            LAHGGQ VLS  T DLV   LP DAWL DLG + L  LPRPE V+QLCHPD+   FPPLR
Sbjct  142  LAHGGQTVLSGTTSDLVADLLPKDAWLNDLGTYRLDDLPRPERVVQLCHPDLHNAFPPLR  201

Query  261  TAKSSPTSILPAQFTTFVGRRAQIS  285
            T K      LPAQ T  VGR  +++
Sbjct  202  TRKVVGAHCLPAQLTRLVGRVDEVA  226


>gi|308369732|ref|ZP_07666794.1| hypothetical protein TMBG_01027 [Mycobacterium tuberculosis SUMu002]
 gi|308326619|gb|EFP15470.1| hypothetical protein TMBG_01027 [Mycobacterium tuberculosis SUMu002]
Length=935

 Score =  227 bits (578),  Expect = 2e-57, Method: Compositional matrix adjust.
 Identities = 127/205 (62%), Positives = 145/205 (71%), Gaps = 3/205 (1%)

Query  82   VSRLPPTGTVTLLLADVEESTHLWQMCPEDMATAIAHLDHTVSEAITNHGGVQPVKRYEG  141
            VS L PTGTVTLLLAD+E +THL     +   TAIA LD T++E +  H GV PV++ EG
Sbjct  110  VSELVPTGTVTLLLADIEGATHL--PGSQLDTTAIAKLDRTLTELVREHRGVCPVEQGEG  167

Query  142  DSFVAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEVQLRDELY-VGPTINRTARLRD  200
            DSF+ AF RASDA ACAL LQR  LAPIRLRIG+HTGEV   DE   VGPTI+RTARLR+
Sbjct  168  DSFLVAFARASDAVACALGLQRAPLAPIRLRIGMHTGEVSSPDEGNCVGPTIDRTARLRE  227

Query  201  LAHGGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPRPEWVMQLCHPDIREKFPPLR  260
            LAHGGQ VLS  T DLV   LP DAWL DLG + L  LPRPE V+QLCHPD+   FPPLR
Sbjct  228  LAHGGQTVLSGTTSDLVADLLPKDAWLNDLGTYRLDDLPRPERVVQLCHPDLHNAFPPLR  287

Query  261  TAKSSPTSILPAQFTTFVGRRAQIS  285
            T K      LPAQ T  VGR  +++
Sbjct  288  TRKVVGAHCLPAQLTRLVGRVDEVA  312


>gi|289448131|ref|ZP_06437875.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis 
CPHL_A]
 gi|289421089|gb|EFD18290.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis 
CPHL_A]
Length=659

 Score =  226 bits (577),  Expect = 2e-57, Method: Compositional matrix adjust.
 Identities = 127/205 (62%), Positives = 145/205 (71%), Gaps = 3/205 (1%)

Query  82   VSRLPPTGTVTLLLADVEESTHLWQMCPEDMATAIAHLDHTVSEAITNHGGVQPVKRYEG  141
            VS L PTGTVTLLLAD+E +THL     +   TAIA LD T++E +  H GV PV++ EG
Sbjct  24   VSELVPTGTVTLLLADIEGATHL--PGSQLDTTAIAKLDRTLTELVREHRGVCPVEQGEG  81

Query  142  DSFVAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEVQLRDELY-VGPTINRTARLRD  200
            DSF+ AF RASDA ACAL LQR  LAPIRLRIG+HTGEV   DE   VGPTI+RTARLR+
Sbjct  82   DSFLVAFARASDAVACALGLQRAPLAPIRLRIGMHTGEVSSPDEGNCVGPTIDRTARLRE  141

Query  201  LAHGGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPRPEWVMQLCHPDIREKFPPLR  260
            LAHGGQ VLS  T DLV   LP DAWL DLG + L  LPRPE V+QLCHPD+   FPPLR
Sbjct  142  LAHGGQTVLSGTTSDLVADLLPKDAWLNDLGTYRLDDLPRPERVVQLCHPDLHNAFPPLR  201

Query  261  TAKSSPTSILPAQFTTFVGRRAQIS  285
            T K      LPAQ T  VGR  +++
Sbjct  202  TRKVVGAHCLPAQLTRLVGRVDEVA  226


>gi|289758620|ref|ZP_06517998.1| transcriptional regulatory protein [Mycobacterium tuberculosis 
T85]
 gi|289714184|gb|EFD78196.1| transcriptional regulatory protein [Mycobacterium tuberculosis 
T85]
Length=317

 Score =  226 bits (577),  Expect = 2e-57, Method: Compositional matrix adjust.
 Identities = 128/207 (62%), Positives = 145/207 (71%), Gaps = 7/207 (3%)

Query  82   VSRLPPTGTVTLLLADVEESTHLWQMCPEDM--ATAIAHLDHTVSEAITNHGGVQPVKRY  139
            VS L PTGTVTLLLAD+E +THL    P      TAIA LD T++E +  H GV PV++ 
Sbjct  48   VSELVPTGTVTLLLADIEGATHL----PGSQLDTTAIAKLDRTLTELVREHRGVCPVEQG  103

Query  140  EGDSFVAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEVQLRDELY-VGPTINRTARL  198
            EGDSF+ AF RASDA ACAL LQR  LAPIRLRIG+HTGEV   DE   VGPTI+RTARL
Sbjct  104  EGDSFLVAFARASDAVACALGLQRAPLAPIRLRIGMHTGEVSSPDEGNCVGPTIDRTARL  163

Query  199  RDLAHGGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPRPEWVMQLCHPDIREKFPP  258
            R+LAHGGQ VLS  T DLV   LP DAWL DLG + L  LPRPE V+QLCHPD+   FPP
Sbjct  164  RELAHGGQTVLSGTTSDLVADLLPKDAWLNDLGTYRLDDLPRPERVVQLCHPDLHNAFPP  223

Query  259  LRTAKSSPTSILPAQFTTFVGRRAQIS  285
            LRT K      LPAQ T  VGR  +++
Sbjct  224  LRTRKVVGAHCLPAQLTRLVGRVDEVA  250


>gi|253798434|ref|YP_003031435.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis 
KZN 1435]
 gi|289553722|ref|ZP_06442932.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis 
KZN 605]
 gi|297635092|ref|ZP_06952872.1| transcriptional regulator, luxR-family protein [Mycobacterium 
tuberculosis KZN 4207]
 gi|297732083|ref|ZP_06961201.1| transcriptional regulator, luxR-family protein [Mycobacterium 
tuberculosis KZN R506]
 gi|313659419|ref|ZP_07816299.1| transcriptional regulator, luxR-family protein [Mycobacterium 
tuberculosis KZN V2475]
 gi|253319937|gb|ACT24540.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis 
KZN 1435]
 gi|289438354|gb|EFD20847.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis 
KZN 605]
 gi|328458202|gb|AEB03625.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis 
KZN 4207]
Length=1137

 Score =  226 bits (575),  Expect = 4e-57, Method: Compositional matrix adjust.
 Identities = 127/207 (62%), Positives = 144/207 (70%), Gaps = 7/207 (3%)

Query  82   VSRLPPTGTVTLLLADVEESTHLWQMCPEDM--ATAIAHLDHTVSEAITNHGGVQPVKRY  139
            VS L PTGTVTLLLAD+E +THL    P      TAIA LD T++E +  H GV PV++ 
Sbjct  48   VSELVPTGTVTLLLADIEGATHL----PGSQLDTTAIAKLDRTLTELVREHRGVCPVEQG  103

Query  140  EGDSFVAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEVQLRDELY-VGPTINRTARL  198
            EGDSF+ AF RASDA ACAL LQR  LAPIRLRIG+HTGEV   DE   VGPTI+RTARL
Sbjct  104  EGDSFLVAFARASDAVACALGLQRAPLAPIRLRIGMHTGEVSSPDEGNCVGPTIDRTARL  163

Query  199  RDLAHGGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPRPEWVMQLCHPDIREKFPP  258
            R+LAHGGQ VLS  T DLV   LP DAWL DLG + L  LPRPE V+QLCHP +   FPP
Sbjct  164  RELAHGGQTVLSGTTSDLVADLLPKDAWLNDLGTYRLDDLPRPERVVQLCHPGLHNAFPP  223

Query  259  LRTAKSSPTSILPAQFTTFVGRRAQIS  285
            LRT K      LPAQ T  VGR  +++
Sbjct  224  LRTRKVVGAHCLPAQLTRLVGRVDEVA  250


>gi|340627502|ref|YP_004745954.1| putative transcriptional regulatory protein [Mycobacterium canettii 
CIPT 140010059]
 gi|340005692|emb|CCC44858.1| putative transcriptional regulatory protein (LUXR-family) [Mycobacterium 
canettii CIPT 140010059]
Length=1114

 Score =  223 bits (569),  Expect = 2e-56, Method: Compositional matrix adjust.
 Identities = 127/207 (62%), Positives = 143/207 (70%), Gaps = 7/207 (3%)

Query  82   VSRLPPTGTVTLLLADVEESTHLWQMCPEDM--ATAIAHLDHTVSEAITNHGGVQPVKRY  139
            VS L PTGTVTLLLAD+E   HL    P     ATAIA+LD T+ E +  H GV PV + 
Sbjct  24   VSELVPTGTVTLLLADIEGEPHL----PGSQLDATAIANLDRTLIELVREHHGVCPVDQG  79

Query  140  EGDSFVAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEVQLRDELY-VGPTINRTARL  198
            EGDSF+ AF RASDA ACAL LQR  LAPIRLRIG+HTGEV   D    VG TINRTARL
Sbjct  80   EGDSFLVAFARASDAVACALGLQRAPLAPIRLRIGMHTGEVSSPDGGNCVGSTINRTARL  139

Query  199  RDLAHGGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRGLPRPEWVMQLCHPDIREKFPP  258
            R+LAHGGQ VLS  T DLV   LP DAWL DLG + L  LPRPE V+QLCHPD+  +FPP
Sbjct  140  RELAHGGQTVLSGTTSDLVADLLPTDAWLNDLGTYRLEDLPRPERVVQLCHPDLHNEFPP  199

Query  259  LRTAKSSPTSILPAQFTTFVGRRAQIS  285
            LRT K+     LPAQ T  VGR  +++
Sbjct  200  LRTRKAVGVHGLPAQLTRLVGRVDEVA  226


>gi|339631427|ref|YP_004723069.1| transcriptional regulator [Mycobacterium africanum GM041182]
 gi|339330783|emb|CCC26454.1| putative transcriptional regulatory protein [Mycobacterium africanum 
GM041182]
Length=1159

 Score =  216 bits (550),  Expect = 4e-54, Method: Compositional matrix adjust.
 Identities = 125/247 (51%), Positives = 158/247 (64%), Gaps = 10/247 (4%)

Query  48   RYHSLRCYAAPPDVGRCEFVPPRRRVLI-------ANQGLDVSRLPPTGTVTLLLADVEE  100
            R+  LR       + R   +P RR  LI       A + LD+        VTLL ADVE 
Sbjct  33   RWQMLRSLQIADQIARTGHMPVRRLDLIWISARNAARRELDLGVAALVEAVTLLTADVEG  92

Query  101  STHLWQMCPEDMATAIAHLDHTVSEAITNHGGV-QPVKRYEGDSFVAAFTRASDAAACAL  159
            ST L Q    ++A     LD  +SEA+  HGGV +PV +  G   V AF RA DA ACAL
Sbjct  93   STRLSQTRLNELAADYPTLDQNISEAVAAHGGVTRPVDQEVGSGLVVAFLRAGDAIACAL  152

Query  160  DLQRTSLAPIRLRIGLHTGEVQLR-DELYVGPTINRTARLRDLAHGGQVVLSAATGDLVT  218
            +LQ ++LAP+R R+G+HTG+V+LR D    G  IN +A LRDLAH GQ +LSAATGDLV 
Sbjct  153  ELQLSTLAPMRPRVGVHTGDVRLRGDGTITGSAINESACLRDLAHEGQTLLSAATGDLVI  212

Query  219  GRLPADAWLVDLGRHPLRGLPRPEWVMQLCHPDIREKFPPLRTAKSSPTSILPAQFTTFV  278
             +LPA+ WL D+G++PLRGL R E V+QLCH D+R +FPPLR +  + +S LPAQFTTFV
Sbjct  213  DQLPANTWLTDVGKYPLRGLHRQERVIQLCHRDLRNEFPPLRMSVGNRSS-LPAQFTTFV  271

Query  279  GRRAQIS  285
            GR AQI+
Sbjct  272  GRDAQIN  278


>gi|31792554|ref|NP_855047.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97]
 gi|31618143|emb|CAD94254.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium bovis 
AF2122/97]
Length=1159

 Score =  216 bits (549),  Expect = 4e-54, Method: Compositional matrix adjust.
 Identities = 125/247 (51%), Positives = 158/247 (64%), Gaps = 10/247 (4%)

Query  48   RYHSLRCYAAPPDVGRCEFVPPRRRVLI-------ANQGLDVSRLPPTGTVTLLLADVEE  100
            R+  LR       + R   +P RR  LI       A + LD+        VTLL ADVE 
Sbjct  33   RWQMLRSLQIADQIARTGHMPVRRLDLIWISARNAARRELDLGVAALVEAVTLLTADVEG  92

Query  101  STHLWQMCPEDMATAIAHLDHTVSEAITNHGGV-QPVKRYEGDSFVAAFTRASDAAACAL  159
            ST L Q    ++A     LD  +SEA+  HGGV +PV +  G   V AF RA DA ACAL
Sbjct  93   STRLSQTRLNELAADYPTLDQNISEAVAAHGGVTRPVDQEVGSGLVVAFLRAGDAIACAL  152

Query  160  DLQRTSLAPIRLRIGLHTGEVQLR-DELYVGPTINRTARLRDLAHGGQVVLSAATGDLVT  218
            +LQ ++LAP+R R+G+HTG+V+LR D    G  IN +A LRDLAH GQ +LSAATGDLV 
Sbjct  153  ELQLSTLAPMRPRVGVHTGDVRLRGDGTITGSAINESACLRDLAHEGQTLLSAATGDLVI  212

Query  219  GRLPADAWLVDLGRHPLRGLPRPEWVMQLCHPDIREKFPPLRTAKSSPTSILPAQFTTFV  278
             +LPA+ WL D+G++PLRGL R E V+QLCH D+R +FPPLR +  + +S LPAQFTTFV
Sbjct  213  DQLPANTWLTDVGKYPLRGLHRQERVIQLCHRDLRNEFPPLRMSVGNRSS-LPAQFTTFV  271

Query  279  GRRAQIS  285
            GR AQI+
Sbjct  272  GRDAQIN  278


>gi|340626374|ref|YP_004744826.1| putative transcriptional regulatory protein [Mycobacterium canettii 
CIPT 140010059]
 gi|340004564|emb|CCC43708.1| putative transcriptional regulatory protein [Mycobacterium canettii 
CIPT 140010059]
Length=1159

 Score =  216 bits (549),  Expect = 4e-54, Method: Compositional matrix adjust.
 Identities = 125/247 (51%), Positives = 158/247 (64%), Gaps = 10/247 (4%)

Query  48   RYHSLRCYAAPPDVGRCEFVPPRRRVLI-------ANQGLDVSRLPPTGTVTLLLADVEE  100
            R+  LR       + R   +P RR  LI       A + LD+        VTLL ADVE 
Sbjct  33   RWQMLRSLQIADQIARTGHMPVRRLDLIWISARNAARRELDLGVAALVEAVTLLTADVEG  92

Query  101  STHLWQMCPEDMATAIAHLDHTVSEAITNHGGV-QPVKRYEGDSFVAAFTRASDAAACAL  159
            ST L Q    ++A     LD  +SEA+  HGGV +PV +  G   V AF RA DA ACAL
Sbjct  93   STRLSQTRLNELAADYPTLDQNISEAVAAHGGVTRPVDQEVGSGLVVAFLRAGDAIACAL  152

Query  160  DLQRTSLAPIRLRIGLHTGEVQLR-DELYVGPTINRTARLRDLAHGGQVVLSAATGDLVT  218
            +LQ ++LAP+R R+G+HTG+V+LR D    G  IN +A LRDLAH GQ +LSAATGDLV 
Sbjct  153  ELQLSTLAPMRPRVGVHTGDVRLRGDGTITGSAINESACLRDLAHEGQTLLSAATGDLVI  212

Query  219  GRLPADAWLVDLGRHPLRGLPRPEWVMQLCHPDIREKFPPLRTAKSSPTSILPAQFTTFV  278
             +LPA+ WL D+G++PLRGL R E V+QLCH D+R +FPPLR +  + +S LPAQFTTFV
Sbjct  213  DQLPANTWLTDVGKYPLRGLHRQERVIQLCHRDLRNEFPPLRMSVGNRSS-LPAQFTTFV  271

Query  279  GRRAQIS  285
            GR AQI+
Sbjct  272  GRDAQIN  278


>gi|254364250|ref|ZP_04980296.1| hypothetical transcriptional regulatory protein [Mycobacterium 
tuberculosis str. Haarlem]
 gi|134149764|gb|EBA41809.1| hypothetical transcriptional regulatory protein [Mycobacterium 
tuberculosis str. Haarlem]
Length=1159

 Score =  216 bits (549),  Expect = 4e-54, Method: Compositional matrix adjust.
 Identities = 125/247 (51%), Positives = 158/247 (64%), Gaps = 10/247 (4%)

Query  48   RYHSLRCYAAPPDVGRCEFVPPRRRVLI-------ANQGLDVSRLPPTGTVTLLLADVEE  100
            R+  LR       + R   +P RR  LI       A + LD+        VTLL ADVE 
Sbjct  33   RWQMLRSLQIADQIARTGHMPVRRLDLIWISARNAARRELDLGVAALVEAVTLLTADVEG  92

Query  101  STHLWQMCPEDMATAIAHLDHTVSEAITNHGGV-QPVKRYEGDSFVAAFTRASDAAACAL  159
            ST L Q    ++A     LD  +SEA+  HGGV +PV +  G   V AF RA DA ACAL
Sbjct  93   STRLSQTRLNELAADYPTLDQNISEAVAAHGGVTRPVDQEVGSGLVVAFLRAGDAIACAL  152

Query  160  DLQRTSLAPIRLRIGLHTGEVQLR-DELYVGPTINRTARLRDLAHGGQVVLSAATGDLVT  218
            +LQ ++LAP+R R+G+HTG+V+LR D    G  IN +A LRDLAH GQ +LSAATGDLV 
Sbjct  153  ELQLSTLAPMRPRVGVHTGDVRLRGDGTITGSAINESACLRDLAHEGQTLLSAATGDLVI  212

Query  219  GRLPADAWLVDLGRHPLRGLPRPEWVMQLCHPDIREKFPPLRTAKSSPTSILPAQFTTFV  278
             +LPA+ WL D+G++PLRGL R E V+QLCH D+R +FPPLR +  + +S LPAQFTTFV
Sbjct  213  DQLPANTWLTDVGKYPLRGLHRQERVIQLCHRDLRNEFPPLRMSVGNRSS-LPAQFTTFV  271

Query  279  GRRAQIS  285
            GR AQI+
Sbjct  272  GRDAQIN  278


>gi|326902980|gb|EGE49913.1| transcriptional regulator [Mycobacterium tuberculosis W-148]
Length=1158

 Score =  216 bits (549),  Expect = 4e-54, Method: Compositional matrix adjust.
 Identities = 125/247 (51%), Positives = 158/247 (64%), Gaps = 10/247 (4%)

Query  48   RYHSLRCYAAPPDVGRCEFVPPRRRVLI-------ANQGLDVSRLPPTGTVTLLLADVEE  100
            R+  LR       + R   +P RR  LI       A + LD+        VTLL ADVE 
Sbjct  33   RWQMLRSLQIADQIARTGHMPVRRLDLIWISARNAARRELDLGVAALVEAVTLLTADVEG  92

Query  101  STHLWQMCPEDMATAIAHLDHTVSEAITNHGGV-QPVKRYEGDSFVAAFTRASDAAACAL  159
            ST L Q    ++A     LD  +SEA+  HGGV +PV +  G   V AF RA DA ACAL
Sbjct  93   STRLSQTRLNELAADYPTLDQNISEAVAAHGGVTRPVDQEVGSGLVVAFLRAGDAIACAL  152

Query  160  DLQRTSLAPIRLRIGLHTGEVQLR-DELYVGPTINRTARLRDLAHGGQVVLSAATGDLVT  218
            +LQ ++LAP+R R+G+HTG+V+LR D    G  IN +A LRDLAH GQ +LSAATGDLV 
Sbjct  153  ELQLSTLAPMRPRVGVHTGDVRLRGDGTITGSAINESACLRDLAHEGQTLLSAATGDLVI  212

Query  219  GRLPADAWLVDLGRHPLRGLPRPEWVMQLCHPDIREKFPPLRTAKSSPTSILPAQFTTFV  278
             +LPA+ WL D+G++PLRGL R E V+QLCH D+R +FPPLR +  + +S LPAQFTTFV
Sbjct  213  DQLPANTWLTDVGKYPLRGLHRQERVIQLCHRDLRNEFPPLRMSVGNRSS-LPAQFTTFV  271

Query  279  GRRAQIS  285
            GR AQI+
Sbjct  272  GRDAQIN  278



Lambda     K      H
   0.323    0.137    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 458372975088




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40