BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0899
Length=326
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608039|ref|NP_215414.1| outer membrane protein A OMPA [Myco... 647 0.0
gi|340625910|ref|YP_004744362.1| outer membrane protein [Mycobac... 645 0.0
gi|308376544|ref|ZP_07439229.2| outer membrane protein A ompA [M... 638 0.0
gi|323720608|gb|EGB29686.1| outer membrane protein A ompA [Mycob... 575 2e-162
gi|343781007|pdb|2L26|A Chain A, Rv0899 From Mycobacterium Tuber... 546 1e-153
gi|289761034|ref|ZP_06520412.1| outer membrane protein A ompA [M... 454 1e-125
gi|118616129|ref|YP_904461.1| outer membrane protein a OmpA [Myc... 403 2e-110
gi|183984604|ref|YP_001852895.1| outer membrane protein a OmpA [... 400 2e-109
gi|240172204|ref|ZP_04750863.1| outer membrane protein a OmpA [M... 396 3e-108
gi|298524392|ref|ZP_07011801.1| outer membrane protein [Mycobact... 364 1e-98
gi|342860505|ref|ZP_08717156.1| outer membrane protein [Mycobact... 281 1e-73
gi|290789833|pdb|2KGS|A Chain A, Solution Structure Of The Amino... 263 4e-68
gi|285803118|pdb|2KSM|A Chain A, Central B Domain Of Rv0899 From... 261 1e-67
gi|290559940|pdb|2KGW|A Chain A, Solution Structure Of The Carbo... 258 7e-67
gi|333989459|ref|YP_004522073.1| outer membrane protein a OmpA [... 205 1e-50
gi|19704600|ref|NP_604162.1| Outer membrane protein [Fusobacteri... 109 5e-22
gi|296329053|ref|ZP_06871559.1| proteobacterial sortase system O... 109 5e-22
gi|343966728|gb|EGV34981.1| inner membrane lipoprotein YiaD [Nei... 107 3e-21
gi|34763092|ref|ZP_00144063.1| Outer membrane protein [Fusobacte... 107 4e-21
gi|237742260|ref|ZP_04572741.1| outer membrane protein [Fusobact... 106 4e-21
gi|237744199|ref|ZP_04574680.1| outer membrane protein [Fusobact... 105 7e-21
gi|254302883|ref|ZP_04970241.1| possible outer membrane protein ... 105 1e-20
gi|298369467|ref|ZP_06980784.1| OmpA family protein [Neisseria s... 105 1e-20
gi|262068012|ref|ZP_06027624.1| OmpA family protein [Fusobacteri... 105 1e-20
gi|225024888|ref|ZP_03714080.1| hypothetical protein EIKCOROL_01... 104 2e-20
gi|339890970|gb|EGQ80018.1| outer membrane protein [Fusobacteriu... 104 2e-20
gi|294782159|ref|ZP_06747485.1| OmpA family protein [Fusobacteri... 104 2e-20
gi|336418643|ref|ZP_08598916.1| OmpA family protein [Fusobacteri... 104 2e-20
gi|296313347|ref|ZP_06863288.1| OmpA family protein [Neisseria p... 104 3e-20
gi|261378300|ref|ZP_05982873.1| OmpA family protein [Neisseria c... 103 3e-20
gi|237748606|ref|ZP_04579086.1| OmpA/MotB domain-containing prot... 103 3e-20
gi|340752913|ref|ZP_08689707.1| outer membrane protein [Fusobact... 102 7e-20
gi|340361296|ref|ZP_08683725.1| OmpA family protein [Neisseria m... 102 8e-20
gi|255067217|ref|ZP_05319072.1| OmpA family protein [Neisseria s... 102 8e-20
gi|330815362|ref|YP_004359067.1| OmpA/MotB [Burkholderia gladiol... 102 9e-20
gi|182678181|ref|YP_001832327.1| OmpA/MotB domain-containing pro... 102 1e-19
gi|194099378|ref|YP_002002478.1| hypothetical protein NGK_1853 [... 102 1e-19
gi|59801892|ref|YP_208604.1| hypothetical protein NGO1559 [Neiss... 101 1e-19
gi|288575422|ref|ZP_06393704.1| OmpA family protein [Neisseria m... 101 2e-19
gi|268595437|ref|ZP_06129604.1| ompA family protein [Neisseria g... 101 2e-19
gi|254494341|ref|ZP_05107512.1| conserved hypothetical protein [... 101 2e-19
gi|329117988|ref|ZP_08246701.1| OmpA family protein [Neisseria b... 101 2e-19
gi|50084108|ref|YP_045618.1| outer membrane protein [Acinetobact... 100 3e-19
gi|296137072|ref|YP_003644314.1| OmpA/MotB domain protein [Thiom... 99.8 6e-19
gi|311108875|ref|YP_003981728.1| OmpA family protein 4 [Achromob... 99.4 7e-19
gi|315497454|ref|YP_004086258.1| ompa/motb domain-containing pro... 99.0 1e-18
gi|221069812|ref|ZP_03545917.1| OmpA/MotB domain protein [Comamo... 99.0 1e-18
gi|110633615|ref|YP_673823.1| OmpA/MotB [Mesorhizobium sp. BNC1]... 98.6 1e-18
gi|264680876|ref|YP_003280786.1| OmpA/MotB [Comamonas testostero... 98.6 1e-18
gi|299134013|ref|ZP_07027206.1| OmpA/MotB domain protein [Afipia... 98.6 1e-18
>gi|15608039|ref|NP_215414.1| outer membrane protein A OMPA [Mycobacterium tuberculosis H37Rv]
gi|15840318|ref|NP_335355.1| OmpA family protein [Mycobacterium tuberculosis CDC1551]
gi|31792087|ref|NP_854580.1| outer membrane protein A OMPA [Mycobacterium bovis AF2122/97]
72 more sequence titles
Length=326
Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/326 (99%), Positives = 326/326 (100%), Gaps = 0/326 (0%)
Query 1 VASKAGLGQTPATTDARRTQKFYRGSPGRPWLIGAVVIPLLIAAIGYGAFERPQSVTGPT 60
+ASKAGLGQTPATTDARRTQKFYRGSPGRPWLIGAVVIPLLIAAIGYGAFERPQSVTGPT
Sbjct 1 MASKAGLGQTPATTDARRTQKFYRGSPGRPWLIGAVVIPLLIAAIGYGAFERPQSVTGPT 60
Query 61 GVLPTLTPTSTRGASALSLSLLSISRSGNTVTLIGDFPDEAAKAALMTALNGLLAPGVNV 120
GVLPTLTPTSTRGASALSLSLLSISRSGNTVTLIGDFPDEAAKAALMTALNGLLAPGVNV
Sbjct 61 GVLPTLTPTSTRGASALSLSLLSISRSGNTVTLIGDFPDEAAKAALMTALNGLLAPGVNV 120
Query 121 IDQIHVDPVVRSLDFSSAEPVFTASVPIPDFGLKVERDTVTLTGTAPSSEHKDAVKRAAT 180
IDQIHVDPVVRSLDFSSAEPVFTASVPIPDFGLKVERDTVTLTGTAPSSEHKDAVKRAAT
Sbjct 121 IDQIHVDPVVRSLDFSSAEPVFTASVPIPDFGLKVERDTVTLTGTAPSSEHKDAVKRAAT 180
Query 181 STWPDMKIVNNIEVTGQAPPGPPASGPCADLQSAINAVTGGPIAFGNDGASLIPADYEIL 240
STWPDMKIVNNIEVTGQAPPGPPASGPCADLQSAINAVTGGPIAFGNDGASLIPADYEIL
Sbjct 181 STWPDMKIVNNIEVTGQAPPGPPASGPCADLQSAINAVTGGPIAFGNDGASLIPADYEIL 240
Query 241 NRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKIVADYLVARGVAGDHIATVGL 300
NRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKIVADYLVARGVAGDHIATVGL
Sbjct 241 NRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKIVADYLVARGVAGDHIATVGL 300
Query 301 GSVNPIASNATPEGRAKNRRVEIVVN 326
GSVNPIASNATPEGRAKNRRVEIVVN
Sbjct 301 GSVNPIASNATPEGRAKNRRVEIVVN 326
>gi|340625910|ref|YP_004744362.1| outer membrane protein [Mycobacterium canettii CIPT 140010059]
gi|340004100|emb|CCC43237.1| OUTER membrane protein A OMPA [Mycobacterium canettii CIPT 140010059]
Length=326
Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/326 (99%), Positives = 326/326 (100%), Gaps = 0/326 (0%)
Query 1 VASKAGLGQTPATTDARRTQKFYRGSPGRPWLIGAVVIPLLIAAIGYGAFERPQSVTGPT 60
+ASKAGLGQTPATTDARRTQKFYRGSPGRPWLIGAVVIPLLIAAIGYGAFERPQSVTGPT
Sbjct 1 MASKAGLGQTPATTDARRTQKFYRGSPGRPWLIGAVVIPLLIAAIGYGAFERPQSVTGPT 60
Query 61 GVLPTLTPTSTRGASALSLSLLSISRSGNTVTLIGDFPDEAAKAALMTALNGLLAPGVNV 120
GVLPTLTPTSTRGASALSLSLLSISRSGNTVTLIGDFPDEAAKAALMTALNGLLAPGVNV
Sbjct 61 GVLPTLTPTSTRGASALSLSLLSISRSGNTVTLIGDFPDEAAKAALMTALNGLLAPGVNV 120
Query 121 IDQIHVDPVVRSLDFSSAEPVFTASVPIPDFGLKVERDTVTLTGTAPSSEHKDAVKRAAT 180
IDQIHVDPVVRSLDFSSAEPVFTASVPIPDFGLKVERDTVTLTGTAPSSEHKDAVKRAAT
Sbjct 121 IDQIHVDPVVRSLDFSSAEPVFTASVPIPDFGLKVERDTVTLTGTAPSSEHKDAVKRAAT 180
Query 181 STWPDMKIVNNIEVTGQAPPGPPASGPCADLQSAINAVTGGPIAFGNDGASLIPADYEIL 240
STWPDMKIV+NIEVTGQAPPGPPASGPCADLQSAINAVTGGPIAFGNDGASLIPADYEIL
Sbjct 181 STWPDMKIVDNIEVTGQAPPGPPASGPCADLQSAINAVTGGPIAFGNDGASLIPADYEIL 240
Query 241 NRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKIVADYLVARGVAGDHIATVGL 300
NRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKIVADYLVARGVAGDHIATVGL
Sbjct 241 NRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKIVADYLVARGVAGDHIATVGL 300
Query 301 GSVNPIASNATPEGRAKNRRVEIVVN 326
GSVNPIASNATPEGRAKNRRVEIVVN
Sbjct 301 GSVNPIASNATPEGRAKNRRVEIVVN 326
>gi|308376544|ref|ZP_07439229.2| outer membrane protein A ompA [Mycobacterium tuberculosis SUMu008]
gi|308350673|gb|EFP39524.1| outer membrane protein A ompA [Mycobacterium tuberculosis SUMu008]
Length=320
Score = 638 bits (1645), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/320 (99%), Positives = 320/320 (100%), Gaps = 0/320 (0%)
Query 7 LGQTPATTDARRTQKFYRGSPGRPWLIGAVVIPLLIAAIGYGAFERPQSVTGPTGVLPTL 66
+GQTPATTDARRTQKFYRGSPGRPWLIGAVVIPLLIAAIGYGAFERPQSVTGPTGVLPTL
Sbjct 1 MGQTPATTDARRTQKFYRGSPGRPWLIGAVVIPLLIAAIGYGAFERPQSVTGPTGVLPTL 60
Query 67 TPTSTRGASALSLSLLSISRSGNTVTLIGDFPDEAAKAALMTALNGLLAPGVNVIDQIHV 126
TPTSTRGASALSLSLLSISRSGNTVTLIGDFPDEAAKAALMTALNGLLAPGVNVIDQIHV
Sbjct 61 TPTSTRGASALSLSLLSISRSGNTVTLIGDFPDEAAKAALMTALNGLLAPGVNVIDQIHV 120
Query 127 DPVVRSLDFSSAEPVFTASVPIPDFGLKVERDTVTLTGTAPSSEHKDAVKRAATSTWPDM 186
DPVVRSLDFSSAEPVFTASVPIPDFGLKVERDTVTLTGTAPSSEHKDAVKRAATSTWPDM
Sbjct 121 DPVVRSLDFSSAEPVFTASVPIPDFGLKVERDTVTLTGTAPSSEHKDAVKRAATSTWPDM 180
Query 187 KIVNNIEVTGQAPPGPPASGPCADLQSAINAVTGGPIAFGNDGASLIPADYEILNRVADK 246
KIVNNIEVTGQAPPGPPASGPCADLQSAINAVTGGPIAFGNDGASLIPADYEILNRVADK
Sbjct 181 KIVNNIEVTGQAPPGPPASGPCADLQSAINAVTGGPIAFGNDGASLIPADYEILNRVADK 240
Query 247 LKACPDARVTINGYTDNTGSEGINIPLSAQRAKIVADYLVARGVAGDHIATVGLGSVNPI 306
LKACPDARVTINGYTDNTGSEGINIPLSAQRAKIVADYLVARGVAGDHIATVGLGSVNPI
Sbjct 241 LKACPDARVTINGYTDNTGSEGINIPLSAQRAKIVADYLVARGVAGDHIATVGLGSVNPI 300
Query 307 ASNATPEGRAKNRRVEIVVN 326
ASNATPEGRAKNRRVEIVVN
Sbjct 301 ASNATPEGRAKNRRVEIVVN 320
>gi|323720608|gb|EGB29686.1| outer membrane protein A ompA [Mycobacterium tuberculosis CDC1551A]
gi|339293909|gb|AEJ46020.1| outer membrane protein A ompA [Mycobacterium tuberculosis CCDC5079]
gi|339297550|gb|AEJ49660.1| outer membrane protein A ompA [Mycobacterium tuberculosis CCDC5180]
Length=291
Score = 575 bits (1483), Expect = 2e-162, Method: Compositional matrix adjust.
Identities = 290/291 (99%), Positives = 291/291 (100%), Gaps = 0/291 (0%)
Query 36 VVIPLLIAAIGYGAFERPQSVTGPTGVLPTLTPTSTRGASALSLSLLSISRSGNTVTLIG 95
+VIPLLIAAIGYGAFERPQSVTGPTGVLPTLTPTSTRGASALSLSLLSISRSGNTVTLIG
Sbjct 1 MVIPLLIAAIGYGAFERPQSVTGPTGVLPTLTPTSTRGASALSLSLLSISRSGNTVTLIG 60
Query 96 DFPDEAAKAALMTALNGLLAPGVNVIDQIHVDPVVRSLDFSSAEPVFTASVPIPDFGLKV 155
DFPDEAAKAALMTALNGLLAPGVNVIDQIHVDPVVRSLDFSSAEPVFTASVPIPDFGLKV
Sbjct 61 DFPDEAAKAALMTALNGLLAPGVNVIDQIHVDPVVRSLDFSSAEPVFTASVPIPDFGLKV 120
Query 156 ERDTVTLTGTAPSSEHKDAVKRAATSTWPDMKIVNNIEVTGQAPPGPPASGPCADLQSAI 215
ERDTVTLTGTAPSSEHKDAVKRAATSTWPDMKIVNNIEVTGQAPPGPPASGPCADLQSAI
Sbjct 121 ERDTVTLTGTAPSSEHKDAVKRAATSTWPDMKIVNNIEVTGQAPPGPPASGPCADLQSAI 180
Query 216 NAVTGGPIAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSA 275
NAVTGGPIAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSA
Sbjct 181 NAVTGGPIAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSA 240
Query 276 QRAKIVADYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVVN 326
QRAKIVADYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVVN
Sbjct 241 QRAKIVADYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVVN 291
>gi|343781007|pdb|2L26|A Chain A, Rv0899 From Mycobacterium Tuberculosis Contains Two
Separated Domains
Length=284
Score = 546 bits (1408), Expect = 1e-153, Method: Compositional matrix adjust.
Identities = 275/275 (100%), Positives = 275/275 (100%), Gaps = 0/275 (0%)
Query 52 RPQSVTGPTGVLPTLTPTSTRGASALSLSLLSISRSGNTVTLIGDFPDEAAKAALMTALN 111
RPQSVTGPTGVLPTLTPTSTRGASALSLSLLSISRSGNTVTLIGDFPDEAAKAALMTALN
Sbjct 2 RPQSVTGPTGVLPTLTPTSTRGASALSLSLLSISRSGNTVTLIGDFPDEAAKAALMTALN 61
Query 112 GLLAPGVNVIDQIHVDPVVRSLDFSSAEPVFTASVPIPDFGLKVERDTVTLTGTAPSSEH 171
GLLAPGVNVIDQIHVDPVVRSLDFSSAEPVFTASVPIPDFGLKVERDTVTLTGTAPSSEH
Sbjct 62 GLLAPGVNVIDQIHVDPVVRSLDFSSAEPVFTASVPIPDFGLKVERDTVTLTGTAPSSEH 121
Query 172 KDAVKRAATSTWPDMKIVNNIEVTGQAPPGPPASGPCADLQSAINAVTGGPIAFGNDGAS 231
KDAVKRAATSTWPDMKIVNNIEVTGQAPPGPPASGPCADLQSAINAVTGGPIAFGNDGAS
Sbjct 122 KDAVKRAATSTWPDMKIVNNIEVTGQAPPGPPASGPCADLQSAINAVTGGPIAFGNDGAS 181
Query 232 LIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKIVADYLVARGVA 291
LIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKIVADYLVARGVA
Sbjct 182 LIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKIVADYLVARGVA 241
Query 292 GDHIATVGLGSVNPIASNATPEGRAKNRRVEIVVN 326
GDHIATVGLGSVNPIASNATPEGRAKNRRVEIVVN
Sbjct 242 GDHIATVGLGSVNPIASNATPEGRAKNRRVEIVVN 276
>gi|289761034|ref|ZP_06520412.1| outer membrane protein A ompA [Mycobacterium tuberculosis GM
1503]
gi|289708540|gb|EFD72556.1| outer membrane protein A ompA [Mycobacterium tuberculosis GM
1503]
Length=232
Score = 454 bits (1167), Expect = 1e-125, Method: Compositional matrix adjust.
Identities = 227/229 (99%), Positives = 227/229 (99%), Gaps = 0/229 (0%)
Query 98 PDEAAKAALMTALNGLLAPGVNVIDQIHVDPVVRSLDFSSAEPVFTASVPIPDFGLKVER 157
P AAKAALMTALNGLLAPGVNVIDQIHVDPVVRSLDFSSAEPVFTASVPIPDFGLKVER
Sbjct 4 PMRAAKAALMTALNGLLAPGVNVIDQIHVDPVVRSLDFSSAEPVFTASVPIPDFGLKVER 63
Query 158 DTVTLTGTAPSSEHKDAVKRAATSTWPDMKIVNNIEVTGQAPPGPPASGPCADLQSAINA 217
DTVTLTGTAPSSEHKDAVKRAATSTWPDMKIVNNIEVTGQAPPGPPASGPCADLQSAINA
Sbjct 64 DTVTLTGTAPSSEHKDAVKRAATSTWPDMKIVNNIEVTGQAPPGPPASGPCADLQSAINA 123
Query 218 VTGGPIAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQR 277
VTGGPIAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQR
Sbjct 124 VTGGPIAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQR 183
Query 278 AKIVADYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVVN 326
AKIVADYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVVN
Sbjct 184 AKIVADYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVVN 232
>gi|118616129|ref|YP_904461.1| outer membrane protein a OmpA [Mycobacterium ulcerans Agy99]
gi|118568239|gb|ABL02990.1| outer membrane protein a OmpA [Mycobacterium ulcerans Agy99]
Length=332
Score = 403 bits (1036), Expect = 2e-110, Method: Compositional matrix adjust.
Identities = 218/332 (66%), Positives = 260/332 (79%), Gaps = 6/332 (1%)
Query 1 VASKAGLGQTPATTDARRTQKFYRGSPGRPWLIGAVVIPLLIAAIGYGAFERPQSVTGPT 60
+ + AGL + PA T+A + KF R G WLIG VVIPLL+AA+GYGA++RP SV GPT
Sbjct 1 MGTDAGLDEAPAPTEAPKEPKFERRPLGVSWLIGVVVIPLLLAALGYGAYQRPTSVNGPT 60
Query 61 GVLPTLTPTSTR-GASALSLSLLSISRSGNTVTLIGDFPDEAAKAALMTALNGLLAPGVN 119
G LPT+T +S + LSLSLLS+SRSGNT+TLIGDFP+ AKAALMT+L GLL+ V
Sbjct 61 GELPTVTASSAKPDRPELSLSLLSVSRSGNTLTLIGDFPNGDAKAALMTSLKGLLSQNVT 120
Query 120 VIDQIHVDPVVRSLDFSSAEPVFTASVPIPDFGLKVERDTVTLTGTAPSSEHKDAVKRAA 179
V+DQI +DP VR+LDFS+AEPVF+AS PIPDF LKVERDT+TLTGTA S + KDAV+ AA
Sbjct 121 VVDQIQIDPKVRALDFSNAEPVFSASGPIPDFTLKVERDTITLTGTAASPDQKDAVRSAA 180
Query 180 TSTWPDMKIVNNIEVTGQA-----PPGPPASGPCADLQSAINAVTGGPIAFGNDGASLIP 234
TS WPD+ + N IEV GQ P GP A+G CADLQ+A+ A+TGG IAFGNDG SL P
Sbjct 181 TSVWPDVNVENQIEVKGQPAGSTPPTGPAATGACADLQAAVTALTGGAIAFGNDGVSLTP 240
Query 235 ADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKIVADYLVARGVAGDH 294
++L +V DKL+ACPDA+VT+NGYTDN+GSEG+NIPLSAQRA+ VAD+LVA GVA DH
Sbjct 241 DSNKVLTQVVDKLRACPDAKVTVNGYTDNSGSEGLNIPLSAQRAQTVADFLVAHGVATDH 300
Query 295 IATVGLGSVNPIASNATPEGRAKNRRVEIVVN 326
I GLGS NPIASN T EGR KNRRVEIVV+
Sbjct 301 ITAKGLGSANPIASNDTAEGRIKNRRVEIVVS 332
>gi|183984604|ref|YP_001852895.1| outer membrane protein a OmpA [Mycobacterium marinum M]
gi|183177930|gb|ACC43040.1| outer membrane protein a OmpA [Mycobacterium marinum M]
Length=332
Score = 400 bits (1027), Expect = 2e-109, Method: Compositional matrix adjust.
Identities = 217/332 (66%), Positives = 258/332 (78%), Gaps = 6/332 (1%)
Query 1 VASKAGLGQTPATTDARRTQKFYRGSPGRPWLIGAVVIPLLIAAIGYGAFERPQSVTGPT 60
+ + AGL + PA T+A + KF R G WLIG VVIPLL+AA+GYGA++RP SV GPT
Sbjct 1 MGTDAGLDEAPAPTEAPKEPKFERRPLGVSWLIGVVVIPLLLAALGYGAYQRPTSVDGPT 60
Query 61 GVLPTLTPTSTR-GASALSLSLLSISRSGNTVTLIGDFPDEAAKAALMTALNGLLAPGVN 119
G LPT+T +S + LSLSLLS+SRSGNT+TLIGDFP+E AKAALMT+L GLL+ V
Sbjct 61 GELPTVTASSAKPDRPELSLSLLSVSRSGNTLTLIGDFPNEDAKAALMTSLKGLLSQNVT 120
Query 120 VIDQIHVDPVVRSLDFSSAEPVFTASVPIPDFGLKVERDTVTLTGTAPSSEHKDAVKRAA 179
V+DQI +DP VR+LDFS+AEPVF+AS PIPDF LKVERDT+TLTGTA S + KDAV AA
Sbjct 121 VVDQIQIDPKVRALDFSNAEPVFSASGPIPDFTLKVERDTITLTGTAASPDQKDAVGSAA 180
Query 180 TSTWPDMKIVNNIEVTGQA-----PPGPPASGPCADLQSAINAVTGGPIAFGNDGASLIP 234
TS W D+ + N IEV GQ P GP A+G CADLQ+A+ A+TGG IAFGNDG SL P
Sbjct 181 TSVWSDVNVENQIEVKGQPAGSTPPTGPAATGACADLQAAVTALTGGAIAFGNDGVSLTP 240
Query 235 ADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKIVADYLVARGVAGDH 294
++L +V DKL+ACPDA+VT+NGYTDN+GSEG+NIPLSAQRA+ VAD+LVA GV DH
Sbjct 241 DSNKVLTQVVDKLRACPDAKVTVNGYTDNSGSEGLNIPLSAQRAQTVADFLVAHGVPTDH 300
Query 295 IATVGLGSVNPIASNATPEGRAKNRRVEIVVN 326
I GLGS NPIASN T EGR KNRRVEIVV+
Sbjct 301 ITAKGLGSANPIASNDTAEGRIKNRRVEIVVS 332
>gi|240172204|ref|ZP_04750863.1| outer membrane protein a OmpA [Mycobacterium kansasii ATCC 12478]
Length=332
Score = 396 bits (1017), Expect = 3e-108, Method: Compositional matrix adjust.
Identities = 220/324 (68%), Positives = 250/324 (78%), Gaps = 11/324 (3%)
Query 11 PATTDARRTQKFYRGSPGRPWLIGAVVIPLLIAAIGYGAFERPQSVTGPTGVLPTLTP-T 69
PA ARR F R G WLI VIPLL+AAIGYGAF RP SVT PTG LPTLT +
Sbjct 12 PAPAHARR---FRRHPLGVAWLIALAVIPLLMAAIGYGAFGRPTSVTAPTGDLPTLTTIS 68
Query 70 STRGASALSLSLLSISRSGNTVTLIGDFPDEAAKAALMTALNGLLAPGVNVIDQIHVDPV 129
ST AS +S SLLSISRSGNT+TLIGDFPD+ AKAAL+ AL +L PGV VIDQI +DP+
Sbjct 69 STPNASDVSWSLLSISRSGNTITLIGDFPDDNAKAALLAALRNVLTPGVTVIDQIRIDPL 128
Query 130 VRSLDFSSAEPVFTASVPIPDFGLKVERDTVTLTGTAPSSEHKDAVKRAATSTWPDMKIV 189
VR+LDF++AEPVFTA IPDF LKVER+TVTL+GTA S + KDAV+RAA ++WP +KIV
Sbjct 129 VRALDFANAEPVFTAGAAIPDFSLKVERNTVTLSGTAASPDQKDAVERAAKTSWPGVKIV 188
Query 190 NNIEVTGQAP-------PGPPASGPCADLQSAINAVTGGPIAFGNDGASLIPADYEILNR 242
NNIEV G AP PG A+GPCADL + INA+TGG IAF NDG SL PAD +IL++
Sbjct 189 NNIEVKGPAPTPGASPPPGSGAAGPCADLPAVINALTGGAIAFKNDGVSLTPADNQILSQ 248
Query 243 VADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKIVADYLVARGVAGDHIATVGLGS 302
VA KLKACPDARVT+NGY+DN G EGIN PLS QRA VAD+L A+GVA DHI G GS
Sbjct 249 VAAKLKACPDARVTVNGYSDNGGGEGINFPLSVQRATTVADFLAAQGVARDHITARGYGS 308
Query 303 VNPIASNATPEGRAKNRRVEIVVN 326
NPIASN TPEGRAKNRRVEIVV+
Sbjct 309 ANPIASNDTPEGRAKNRRVEIVVS 332
>gi|298524392|ref|ZP_07011801.1| outer membrane protein [Mycobacterium tuberculosis 94_M4241A]
gi|298494186|gb|EFI29480.1| outer membrane protein [Mycobacterium tuberculosis 94_M4241A]
Length=181
Score = 364 bits (934), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 180/181 (99%), Positives = 181/181 (100%), Gaps = 0/181 (0%)
Query 146 VPIPDFGLKVERDTVTLTGTAPSSEHKDAVKRAATSTWPDMKIVNNIEVTGQAPPGPPAS 205
+PIPDFGLKVERDTVTLTGTAPSSEHKDAVKRAATSTWPDMKIVNNIEVTGQAPPGPPAS
Sbjct 1 MPIPDFGLKVERDTVTLTGTAPSSEHKDAVKRAATSTWPDMKIVNNIEVTGQAPPGPPAS 60
Query 206 GPCADLQSAINAVTGGPIAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTG 265
GPCADLQSAINAVTGGPIAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTG
Sbjct 61 GPCADLQSAINAVTGGPIAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTG 120
Query 266 SEGINIPLSAQRAKIVADYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVV 325
SEGINIPLSAQRAKIVADYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVV
Sbjct 121 SEGINIPLSAQRAKIVADYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVV 180
Query 326 N 326
N
Sbjct 181 N 181
>gi|342860505|ref|ZP_08717156.1| outer membrane protein [Mycobacterium colombiense CECT 3035]
gi|342132160|gb|EGT85401.1| outer membrane protein [Mycobacterium colombiense CECT 3035]
Length=300
Score = 281 bits (718), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 153/301 (51%), Positives = 199/301 (67%), Gaps = 8/301 (2%)
Query 27 PGRPWLIGAVVIPLLIAAIGYGAFER-PQSVTGPTGVLPTLTPTSTRGASALSLSLLSIS 85
P WLI +VIPLLIAAIGY R P P P+S GA +SL+ S+
Sbjct 7 PTLVWLIALLVIPLLIAAIGYQTSARSPSGRASPA-------PSSGAGAPKVSLAAFSMV 59
Query 86 RSGNTVTLIGDFPDEAAKAALMTALNGLLAPGVNVIDQIHVDPVVRSLDFSSAEPVFTAS 145
R GN+VTL GDFPDE+AKAAL+ L G L PG+N++DQI +DP V +LDF+ A+PVF+ S
Sbjct 60 RDGNSVTLTGDFPDESAKAALLRVLTGALPPGLNIVDQIRIDPAVDALDFAKAKPVFSDS 119
Query 146 VPIPDFGLKVERDTVTLTGTAPSSEHKDAVKRAATSTWPDMKIVNNIEVTGQAPPGPPAS 205
I DF L V DT+TL GTA S E K+A+ A W + +V+N+ V A P PA+
Sbjct 120 ASIADFALTVGGDTITLAGTAASPEQKNAIDADAKRIWSTLNVVDNLAVNAPAAPPSPAA 179
Query 206 GPCADLQSAINAVTGGPIAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTG 265
C +LQSAIN + G + F ++ SL +D ++L RVADKLKACP+AR INGY D+TG
Sbjct 180 ASCTNLQSAINTLIDGALTFDSNIDSLTASDEQVLTRVADKLKACPNARAAINGYADSTG 239
Query 266 SEGINIPLSAQRAKIVADYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVV 325
+ +N+PLS +RA+ VA +L A GV GD ++T G GS NP+A N T +GRA+NRRVEIVV
Sbjct 240 NTSLNVPLSEERAQAVAGFLEAHGVPGDRLSTNGFGSANPVAPNGTDDGRAQNRRVEIVV 299
Query 326 N 326
+
Sbjct 300 S 300
>gi|290789833|pdb|2KGS|A Chain A, Solution Structure Of The Amino-Terminal Domain Of Ompatb,
A Pore Forming Protein From Mycobacterium Tuberculosis
Length=132
Score = 263 bits (671), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 132/132 (100%), Positives = 132/132 (100%), Gaps = 0/132 (0%)
Query 73 GASALSLSLLSISRSGNTVTLIGDFPDEAAKAALMTALNGLLAPGVNVIDQIHVDPVVRS 132
GASALSLSLLSISRSGNTVTLIGDFPDEAAKAALMTALNGLLAPGVNVIDQIHVDPVVRS
Sbjct 1 GASALSLSLLSISRSGNTVTLIGDFPDEAAKAALMTALNGLLAPGVNVIDQIHVDPVVRS 60
Query 133 LDFSSAEPVFTASVPIPDFGLKVERDTVTLTGTAPSSEHKDAVKRAATSTWPDMKIVNNI 192
LDFSSAEPVFTASVPIPDFGLKVERDTVTLTGTAPSSEHKDAVKRAATSTWPDMKIVNNI
Sbjct 61 LDFSSAEPVFTASVPIPDFGLKVERDTVTLTGTAPSSEHKDAVKRAATSTWPDMKIVNNI 120
Query 193 EVTGQAPPGPPA 204
EVTGQAPPGPPA
Sbjct 121 EVTGQAPPGPPA 132
>gi|285803118|pdb|2KSM|A Chain A, Central B Domain Of Rv0899 From Mycobacterium Tuberculosis
Length=131
Score = 261 bits (667), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 131/131 (100%), Positives = 131/131 (100%), Gaps = 0/131 (0%)
Query 73 GASALSLSLLSISRSGNTVTLIGDFPDEAAKAALMTALNGLLAPGVNVIDQIHVDPVVRS 132
GASALSLSLLSISRSGNTVTLIGDFPDEAAKAALMTALNGLLAPGVNVIDQIHVDPVVRS
Sbjct 1 GASALSLSLLSISRSGNTVTLIGDFPDEAAKAALMTALNGLLAPGVNVIDQIHVDPVVRS 60
Query 133 LDFSSAEPVFTASVPIPDFGLKVERDTVTLTGTAPSSEHKDAVKRAATSTWPDMKIVNNI 192
LDFSSAEPVFTASVPIPDFGLKVERDTVTLTGTAPSSEHKDAVKRAATSTWPDMKIVNNI
Sbjct 61 LDFSSAEPVFTASVPIPDFGLKVERDTVTLTGTAPSSEHKDAVKRAATSTWPDMKIVNNI 120
Query 193 EVTGQAPPGPP 203
EVTGQAPPGPP
Sbjct 121 EVTGQAPPGPP 131
>gi|290559940|pdb|2KGW|A Chain A, Solution Structure Of The Carboxy-Terminal Domain Of
Ompatb, A Pore Forming Protein From Mycobacterium Tuberculosis
Length=129
Score = 258 bits (660), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 129/129 (100%), Positives = 129/129 (100%), Gaps = 0/129 (0%)
Query 198 APPGPPASGPCADLQSAINAVTGGPIAFGNDGASLIPADYEILNRVADKLKACPDARVTI 257
APPGPPASGPCADLQSAINAVTGGPIAFGNDGASLIPADYEILNRVADKLKACPDARVTI
Sbjct 1 APPGPPASGPCADLQSAINAVTGGPIAFGNDGASLIPADYEILNRVADKLKACPDARVTI 60
Query 258 NGYTDNTGSEGINIPLSAQRAKIVADYLVARGVAGDHIATVGLGSVNPIASNATPEGRAK 317
NGYTDNTGSEGINIPLSAQRAKIVADYLVARGVAGDHIATVGLGSVNPIASNATPEGRAK
Sbjct 61 NGYTDNTGSEGINIPLSAQRAKIVADYLVARGVAGDHIATVGLGSVNPIASNATPEGRAK 120
Query 318 NRRVEIVVN 326
NRRVEIVVN
Sbjct 121 NRRVEIVVN 129
>gi|333989459|ref|YP_004522073.1| outer membrane protein a OmpA [Mycobacterium sp. JDM601]
gi|333485427|gb|AEF34819.1| outer membrane protein a OmpA [Mycobacterium sp. JDM601]
Length=334
Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 121/282 (43%), Positives = 164/282 (59%), Gaps = 32/282 (11%)
Query 77 LSLSLLSISRSGNTVTLIGDFPDEAAKAALMTALNGLLAPGVNVIDQIHVDPVVRSLDFS 136
+S + LSI R+GN +TL GD PD A + L+ L GL GV ++D I++ P V+ D +
Sbjct 53 ISFAPLSILRNGNVITLNGDLPDVATRTGLIEMLKGLFGSGVQLVDNINIKPGVKVPDAA 112
Query 137 SAEPVFTASVPIPDFGLKVERDTVTLTGTAPSSEHKDAVKRAATSTWPDMKIVNNIEVTG 196
+ VF A+V +PDF K+ TVTL GTA S K AV+ AA + WP++ I NNI V
Sbjct 113 ALGSVFKAAVSMPDFKFKISGGTVTLIGTAASGAVKSAVEAAAKAAWPNLVISNNILVLP 172
Query 197 QAP------------------PGPPA--------------SGPCADLQSAINAVTGGPIA 224
P PG PA +G C LQ+ + A+ P+
Sbjct 173 DVPEAPGPEVPRPEAPNTPAAPGSPAPKPVPPSASPAPDPAGDCGKLQADVTALMATPVT 232
Query 225 FGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKIVADY 284
F +G +L P L+RVA+ LK C A+VT++GYTDNTG++GIN+PLS RAK VAD+
Sbjct 233 FVTNGHTLSPGTRRQLSRVAETLKGCRSAQVTVSGYTDNTGNDGINVPLSTDRAKAVADF 292
Query 285 LVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVVN 326
LVA+GV + G GS +P+ASNATP+GRA+NRRV I V+
Sbjct 293 LVAQGVPASSVTAKGFGSADPVASNATPDGRAQNRRVAITVS 334
>gi|19704600|ref|NP_604162.1| Outer membrane protein [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
gi|19714896|gb|AAL95461.1| Outer membrane protein [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
Length=202
Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 52/105 (50%), Positives = 69/105 (66%), Gaps = 0/105 (0%)
Query 221 GPIAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKI 280
G + F +D A++ Y LN +A L P+ R+ +NGYTDNTG + N LS +RA
Sbjct 94 GGVTFASDSANITSGFYSALNGIAQSLNNYPETRIQVNGYTDNTGKDAHNQELSQRRANA 153
Query 281 VADYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVV 325
VA YL+A+GV+ + I G GS NPIASN+TPEGR +NRRVEI +
Sbjct 154 VAQYLIAQGVSSNRIVANGFGSSNPIASNSTPEGRLQNRRVEIKI 198
>gi|296329053|ref|ZP_06871559.1| proteobacterial sortase system OmpA family protein [Fusobacterium
nucleatum subsp. nucleatum ATCC 23726]
gi|296153857|gb|EFG94669.1| proteobacterial sortase system OmpA family protein [Fusobacterium
nucleatum subsp. nucleatum ATCC 23726]
Length=208
Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 52/105 (50%), Positives = 69/105 (66%), Gaps = 0/105 (0%)
Query 221 GPIAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKI 280
G + F +D A++ Y LN +A L P+ R+ +NGYTDNTG + N LS +RA
Sbjct 100 GGVTFASDSANITSGFYSALNGIAQSLNNYPETRIQVNGYTDNTGKDAHNQELSQRRANA 159
Query 281 VADYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVV 325
VA YL+A+GV+ + I G GS NPIASN+TPEGR +NRRVEI +
Sbjct 160 VAQYLIAQGVSSNRIVANGFGSSNPIASNSTPEGRLQNRRVEIKI 204
>gi|343966728|gb|EGV34981.1| inner membrane lipoprotein YiaD [Neisseria weaveri ATCC 51223]
gi|343969231|gb|EGV37448.1| inner membrane lipoprotein YiaD [Neisseria weaveri LMG 5135]
Length=225
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/104 (53%), Positives = 71/104 (69%), Gaps = 0/104 (0%)
Query 223 IAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKIVA 282
+ F A+L A + LNR + L PD +TI G+TDNTGS+ IN PLS +RA+ VA
Sbjct 109 VTFATGSATLSTAAMDALNRASQTLVQYPDTTLTIAGHTDNTGSDAINEPLSQRRAQSVA 168
Query 283 DYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVVN 326
YL RGVA ++T+G GS P+ASNAT EGRA+NRRVEI++N
Sbjct 169 GYLNQRGVAVARLSTIGYGSRQPVASNATVEGRAQNRRVEILIN 212
>gi|34763092|ref|ZP_00144063.1| Outer membrane protein [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
gi|27887226|gb|EAA24326.1| Outer membrane protein [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
Length=202
Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 51/105 (49%), Positives = 68/105 (65%), Gaps = 0/105 (0%)
Query 221 GPIAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKI 280
G + F +D A++ Y LN +A L P+ R+ +NGYTDNTG + N LS +RA
Sbjct 94 GGVTFASDSANISSGFYSALNGIAQSLNNYPETRIQVNGYTDNTGKDAHNQELSQRRANA 153
Query 281 VADYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVV 325
VA YL+A+GVA + I G GS NP+ASN+T EGR +NRRVEI +
Sbjct 154 VAQYLIAQGVASNRIVANGFGSSNPVASNSTQEGRLQNRRVEIKI 198
>gi|237742260|ref|ZP_04572741.1| outer membrane protein [Fusobacterium sp. 4_1_13]
gi|256845531|ref|ZP_05550989.1| type VI secretion system OmpA/MotB [Fusobacterium sp. 3_1_36A2]
gi|294785172|ref|ZP_06750460.1| OmpA family protein [Fusobacterium sp. 3_1_27]
gi|229429908|gb|EEO40120.1| outer membrane protein [Fusobacterium sp. 4_1_13]
gi|256719090|gb|EEU32645.1| type VI secretion system OmpA/MotB [Fusobacterium sp. 3_1_36A2]
gi|294486886|gb|EFG34248.1| OmpA family protein [Fusobacterium sp. 3_1_27]
Length=212
Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 51/105 (49%), Positives = 68/105 (65%), Gaps = 0/105 (0%)
Query 221 GPIAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKI 280
G + F +D A++ Y LN +A L P+ R+ +NGYTDNTG + N LS +RA
Sbjct 104 GGVTFASDSANISSGFYSALNGIAQSLNNYPETRIQVNGYTDNTGKDAHNQELSQRRANA 163
Query 281 VADYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVV 325
VA YL+A+GVA + I G GS NP+ASN+T EGR +NRRVEI +
Sbjct 164 VAQYLIAQGVASNRIVANGFGSSNPVASNSTQEGRLQNRRVEIKI 208
>gi|237744199|ref|ZP_04574680.1| outer membrane protein [Fusobacterium sp. 7_1]
gi|260494220|ref|ZP_05814351.1| type VI secretion system OmpA/MotB [Fusobacterium sp. 3_1_33]
gi|289765644|ref|ZP_06525022.1| outer membrane protein [Fusobacterium sp. D11]
gi|336401234|ref|ZP_08582006.1| hypothetical protein HMPREF0404_01297 [Fusobacterium sp. 21_1A]
gi|229431428|gb|EEO41640.1| outer membrane protein [Fusobacterium sp. 7_1]
gi|260198366|gb|EEW95882.1| type VI secretion system OmpA/MotB [Fusobacterium sp. 3_1_33]
gi|289717199|gb|EFD81211.1| outer membrane protein [Fusobacterium sp. D11]
gi|336161591|gb|EGN64592.1| hypothetical protein HMPREF0404_01297 [Fusobacterium sp. 21_1A]
Length=212
Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 51/105 (49%), Positives = 68/105 (65%), Gaps = 0/105 (0%)
Query 221 GPIAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKI 280
G + F +D A++ Y LN +A L P+ R+ +NGYTDNTG + N LS +RA
Sbjct 104 GGVTFASDSANISSGFYSALNGIAQSLNNYPETRIQVNGYTDNTGKDAHNQELSQRRANA 163
Query 281 VADYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVV 325
VA YL+A+GV+ I G GS NPIASN+TP+GR +NRRVEI +
Sbjct 164 VAQYLIAQGVSSSRIIANGFGSSNPIASNSTPDGRLQNRRVEIKI 208
>gi|254302883|ref|ZP_04970241.1| possible outer membrane protein [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148323075|gb|EDK88325.1| possible outer membrane protein [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length=212
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/105 (49%), Positives = 69/105 (66%), Gaps = 0/105 (0%)
Query 221 GPIAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKI 280
G + F +D A++ + Y LN +A L P+ R+ +NGYTD+TG++ N LS +RA
Sbjct 104 GGVTFASDSANITSSFYSALNGIAQSLNNYPETRIQVNGYTDSTGNDAHNQELSQRRANA 163
Query 281 VADYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVV 325
VA YLVA+GV+ I G GS NPIASN+T EGR +NRRVEI +
Sbjct 164 VAQYLVAQGVSSSRIVANGFGSSNPIASNSTQEGRLQNRRVEIKI 208
>gi|298369467|ref|ZP_06980784.1| OmpA family protein [Neisseria sp. oral taxon 014 str. F0314]
gi|298282024|gb|EFI23512.1| OmpA family protein [Neisseria sp. oral taxon 014 str. F0314]
Length=224
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/104 (51%), Positives = 70/104 (68%), Gaps = 0/104 (0%)
Query 223 IAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKIVA 282
+ F + A+L + L + L PD +TING+TDNTGS+ IN PLS RA+ VA
Sbjct 110 VTFATNSATLSANARDALTAASKTLVQYPDTTLTINGHTDNTGSDAINDPLSRNRAQSVA 169
Query 283 DYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVVN 326
+L ++GVAG + T G GS P+ASNATPEGRA+NRRVEI++N
Sbjct 170 SFLQSQGVAGSRLTTAGHGSRQPVASNATPEGRAQNRRVEILIN 213
>gi|262068012|ref|ZP_06027624.1| OmpA family protein [Fusobacterium periodonticum ATCC 33693]
gi|291378280|gb|EFE85798.1| OmpA family protein [Fusobacterium periodonticum ATCC 33693]
Length=212
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/105 (49%), Positives = 68/105 (65%), Gaps = 0/105 (0%)
Query 221 GPIAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKI 280
G + F +D A++ Y LN VA L P+ R+ +NGYTD+TG + N+ LS +RA
Sbjct 104 GGVTFASDSANISSGFYSALNGVAQTLVKYPETRIQVNGYTDSTGGDAHNLDLSQRRANA 163
Query 281 VADYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVV 325
VA Y +A+GV+ + I G GS NPIASNATPEGR NRRVE+ +
Sbjct 164 VAQYFIAQGVSSNRIVANGFGSSNPIASNATPEGRQANRRVEVRI 208
>gi|225024888|ref|ZP_03714080.1| hypothetical protein EIKCOROL_01776 [Eikenella corrodens ATCC
23834]
gi|224942346|gb|EEG23555.1| hypothetical protein EIKCOROL_01776 [Eikenella corrodens ATCC
23834]
Length=219
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/104 (50%), Positives = 70/104 (68%), Gaps = 0/104 (0%)
Query 223 IAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKIVA 282
+ F + +SL P LN VA+ L P+ +T+ G+TDNTG++ IN PLS RA+ VA
Sbjct 108 VTFATNSSSLSPDAVNSLNTVANVLTQYPETTITVAGHTDNTGNDRINNPLSKNRARSVA 167
Query 283 DYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVVN 326
YL RGVA I+TVG GS +P+A N+T GRA+NRRVEI++N
Sbjct 168 GYLTGRGVAASRISTVGYGSRSPVADNSTESGRAQNRRVEILIN 211
>gi|339890970|gb|EGQ80018.1| outer membrane protein [Fusobacterium nucleatum subsp. animalis
ATCC 51191]
Length=202
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/105 (48%), Positives = 67/105 (64%), Gaps = 0/105 (0%)
Query 221 GPIAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKI 280
G + F +D A++ Y LN +A L P+ R+ +NGYTDNTG + N LS +RA
Sbjct 94 GGVTFASDSANISSGFYSALNGIAQSLNNYPETRIQVNGYTDNTGKDAHNQELSQRRANA 153
Query 281 VADYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVV 325
VA YL+ +GV+ I G GS NPIASN+TP+GR +NRRVEI +
Sbjct 154 VAQYLIGQGVSSSRIIANGFGSSNPIASNSTPDGRLQNRRVEIKI 198
>gi|294782159|ref|ZP_06747485.1| OmpA family protein [Fusobacterium sp. 1_1_41FAA]
gi|294480800|gb|EFG28575.1| OmpA family protein [Fusobacterium sp. 1_1_41FAA]
Length=212
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/105 (49%), Positives = 69/105 (66%), Gaps = 0/105 (0%)
Query 221 GPIAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKI 280
G + F +D A++ Y LN VA L P+ R+ +NGYTD+TG + N LS +RA
Sbjct 104 GGVTFASDSANISSGFYSALNGVAQTLVRYPETRIQVNGYTDSTGGDAHNQELSQRRANS 163
Query 281 VADYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVV 325
VA YL+++GV+ + I G GS+NPIASNATPEGR NRRVE+ +
Sbjct 164 VAQYLISQGVSSNRIVANGFGSLNPIASNATPEGRQANRRVEVRI 208
>gi|336418643|ref|ZP_08598916.1| OmpA family protein [Fusobacterium sp. 11_3_2]
gi|336164489|gb|EGN67395.1| OmpA family protein [Fusobacterium sp. 11_3_2]
Length=212
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/105 (48%), Positives = 67/105 (64%), Gaps = 0/105 (0%)
Query 221 GPIAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKI 280
G + F +D A++ Y LN +A L P+ R+ +NGYTDNTG + N LS +RA
Sbjct 104 GGVTFASDSANISSGFYSALNGIAQSLNNYPETRIQVNGYTDNTGKDAHNQELSQRRANA 163
Query 281 VADYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVV 325
VA YL+ +GV+ I G GS NPIASN+TP+GR +NRRVEI +
Sbjct 164 VAQYLIGQGVSSSRIIANGFGSSNPIASNSTPDGRLQNRRVEIKI 208
>gi|296313347|ref|ZP_06863288.1| OmpA family protein [Neisseria polysaccharea ATCC 43768]
gi|296840164|gb|EFH24102.1| OmpA family protein [Neisseria polysaccharea ATCC 43768]
Length=225
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/87 (59%), Positives = 62/87 (72%), Gaps = 0/87 (0%)
Query 240 LNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKIVADYLVARGVAGDHIATVG 299
LN A L PD +TING+TDNTGS+ +N PLS RA+ VA YL +RGVA +A G
Sbjct 127 LNTAAQTLVQYPDTTLTINGHTDNTGSDAVNNPLSQHRAQAVAYYLQSRGVAASRLAVYG 186
Query 300 LGSVNPIASNATPEGRAKNRRVEIVVN 326
GS P+ASNAT EGRA+NRRVEI++N
Sbjct 187 YGSHMPVASNATAEGRAQNRRVEILIN 213
>gi|261378300|ref|ZP_05982873.1| OmpA family protein [Neisseria cinerea ATCC 14685]
gi|269145394|gb|EEZ71812.1| OmpA family protein [Neisseria cinerea ATCC 14685]
Length=225
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/87 (59%), Positives = 62/87 (72%), Gaps = 0/87 (0%)
Query 240 LNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKIVADYLVARGVAGDHIATVG 299
LN A L PD +TING+TDNTGS+ +N PLS RA+ VA YL +RGVA +A G
Sbjct 127 LNTAAQTLVQYPDTTLTINGHTDNTGSDAVNNPLSQHRAQTVAYYLQSRGVAASRLAVYG 186
Query 300 LGSVNPIASNATPEGRAKNRRVEIVVN 326
GS P+ASNAT EGRA+NRRVEI++N
Sbjct 187 YGSHMPVASNATAEGRAQNRRVEILIN 213
>gi|237748606|ref|ZP_04579086.1| OmpA/MotB domain-containing protein [Oxalobacter formigenes OXCC13]
gi|229379968|gb|EEO30059.1| OmpA/MotB domain-containing protein [Oxalobacter formigenes OXCC13]
Length=217
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/103 (50%), Positives = 70/103 (68%), Gaps = 0/103 (0%)
Query 223 IAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKIVA 282
++F ++L P IL +A LK P + + + GYTDNTGS+ +N+PLS +RA V
Sbjct 111 VSFATGSSTLSPQFKTILRDLATTLKNNPSSSIFVVGYTDNTGSDSVNLPLSRKRAMSVM 170
Query 283 DYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVV 325
+YLV++GVA + G+GS +PIASNAT EGRA+NRRVEI V
Sbjct 171 EYLVSQGVAANRFTVEGMGSKDPIASNATAEGRAQNRRVEIYV 213
>gi|340752913|ref|ZP_08689707.1| outer membrane protein [Fusobacterium sp. 2_1_31]
gi|229422704|gb|EEO37751.1| outer membrane protein [Fusobacterium sp. 2_1_31]
Length=212
Score = 102 bits (255), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 51/105 (49%), Positives = 67/105 (64%), Gaps = 0/105 (0%)
Query 221 GPIAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKI 280
G + F +D A++ Y LN VA L P+ R+ +NGYTD+TG + N LS +RA
Sbjct 104 GGVTFASDSANISSGFYSALNGVAQTLVRYPETRIQVNGYTDSTGGDAHNQELSQRRANS 163
Query 281 VADYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVV 325
VA YL+++GV+ I G GS NPIASNATPEGR NRRVE+ +
Sbjct 164 VAQYLISQGVSSSRIVANGFGSSNPIASNATPEGRQANRRVEVRI 208
>gi|340361296|ref|ZP_08683725.1| OmpA family protein [Neisseria macacae ATCC 33926]
gi|339888673|gb|EGQ78107.1| OmpA family protein [Neisseria macacae ATCC 33926]
Length=226
Score = 102 bits (254), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 54/104 (52%), Positives = 68/104 (66%), Gaps = 0/104 (0%)
Query 223 IAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKIVA 282
+ F A+L L ++ L PD +TING+TDNTG++ IN PLS RA VA
Sbjct 110 VTFATGSAALSDQARNALATASETLVQYPDTTLTINGHTDNTGNDAINEPLSRNRALAVA 169
Query 283 DYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVVN 326
DYL +RGV G + T G GS +PIASNAT EGRA+NRRVEI++N
Sbjct 170 DYLQSRGVNGSRLTTAGYGSRHPIASNATVEGRAQNRRVEILIN 213
>gi|255067217|ref|ZP_05319072.1| OmpA family protein [Neisseria sicca ATCC 29256]
gi|255048585|gb|EET44049.1| OmpA family protein [Neisseria sicca ATCC 29256]
Length=261
Score = 102 bits (254), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 54/104 (52%), Positives = 68/104 (66%), Gaps = 0/104 (0%)
Query 223 IAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKIVA 282
+ F A+L L ++ L PD +TING+TDNTG++ IN PLS RA VA
Sbjct 145 VTFATGSAALSDQARNALATASETLVQYPDTTLTINGHTDNTGNDAINEPLSRNRALAVA 204
Query 283 DYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVVN 326
DYL +RGV G + T G GS +PIASNAT EGRA+NRRVEI++N
Sbjct 205 DYLQSRGVNGSRLTTAGYGSRHPIASNATAEGRAQNRRVEILIN 248
>gi|330815362|ref|YP_004359067.1| OmpA/MotB [Burkholderia gladioli BSR3]
gi|327367755|gb|AEA59111.1| OmpA/MotB [Burkholderia gladioli BSR3]
Length=345
Score = 102 bits (254), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 79/235 (34%), Positives = 115/235 (49%), Gaps = 16/235 (6%)
Query 95 GDFPDEAAKAALMTALNGLLAPGVNVIDQIHVDPVVRSLDFSS--AEPVFTASVPIPDFG 152
G PDEA KAA++ L G NV+DQI V V ++S+ + + I
Sbjct 123 GKVPDEATKAAVLQKLRDTYGAG-NVVDQIEVGDVTTPPNWSANVQKLIGPQLKQISKGQ 181
Query 153 LKVERDTVTLTGTAPSSEHKDAV-KRAATSTWPDMKIVNNIEVTGQAPPGPPASGPCADL 211
LK++ ++ + G + + V A P I N + V+ AS
Sbjct 182 LKIDGTSIDVRGEVRNEALRQQVASDMANQLNPTYTIRNALRVS--------ASEQGILD 233
Query 212 QSAINAVTGGPIAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINI 271
Q+ N I F A+L P IL+++AD + + +VTI G+TDN+G+ NI
Sbjct 234 QTLANRT----IEFETGSATLTPQGRAILDQMADAMSKLANRQVTIIGHTDNSGNRATNI 289
Query 272 PLSAQRAKIVADYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVVN 326
LS RA V YLVA+G+A + T G+G PIASN T +GRA+NRR+E V+
Sbjct 290 SLSQARADAVKGYLVAKGIASQQLTTTGVGPDQPIASNDTADGRARNRRIEFRVS 344
>gi|182678181|ref|YP_001832327.1| OmpA/MotB domain-containing protein [Beijerinckia indica subsp.
indica ATCC 9039]
gi|182634064|gb|ACB94838.1| OmpA/MotB domain protein [Beijerinckia indica subsp. indica ATCC
9039]
Length=459
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/116 (44%), Positives = 75/116 (65%), Gaps = 1/116 (0%)
Query 212 QSAINAVTG-GPIAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGIN 270
Q+ ++ + G I F +GA++ + +L+R+ + CP+A + I+G+TD+TG+E N
Sbjct 344 QAELDGLLGKATILFETNGATISKSSEGLLDRIVTTIGHCPEATIEISGHTDSTGNEPFN 403
Query 271 IPLSAQRAKIVADYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVVN 326
+ LS +RAK V DYLVA G+ D ++ G GS P+ASN T EGRAKNRR+E V
Sbjct 404 LALSERRAKAVFDYLVAAGIPADKLSATGYGSSRPVASNDTEEGRAKNRRIEFTVK 459
>gi|194099378|ref|YP_002002478.1| hypothetical protein NGK_1853 [Neisseria gonorrhoeae NCCP11945]
gi|240014801|ref|ZP_04721714.1| hypothetical protein NgonD_09194 [Neisseria gonorrhoeae DGI18]
gi|240017250|ref|ZP_04723790.1| hypothetical protein NgonFA_08817 [Neisseria gonorrhoeae FA6140]
gi|240121324|ref|ZP_04734286.1| hypothetical protein NgonPI_06069 [Neisseria gonorrhoeae PID24-1]
gi|293398468|ref|ZP_06642646.1| hypothetical protein NGNG_01123 [Neisseria gonorrhoeae F62]
gi|193934668|gb|ACF30492.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945]
gi|291610939|gb|EFF40036.1| hypothetical protein NGNG_01123 [Neisseria gonorrhoeae F62]
gi|317164880|gb|ADV08421.1| hypothetical protein NGTW08_1460 [Neisseria gonorrhoeae TCDC-NG08107]
Length=225
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/104 (51%), Positives = 66/104 (64%), Gaps = 0/104 (0%)
Query 223 IAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKIVA 282
+ F A+L + LN A L PD +TING+TDNTGS+ +N PLS RA+ VA
Sbjct 110 VTFATGSAALGGSAQYALNTAAQTLVQYPDTTLTINGHTDNTGSDAVNNPLSQHRAQAVA 169
Query 283 DYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVVN 326
YL RGVA + G GS P+ASNAT EGRA+NRRVEI++N
Sbjct 170 YYLQTRGVAASRLTVYGYGSHMPVASNATVEGRAQNRRVEILIN 213
>gi|59801892|ref|YP_208604.1| hypothetical protein NGO1559 [Neisseria gonorrhoeae FA 1090]
gi|291043130|ref|ZP_06568853.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
gi|59718787|gb|AAW90192.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
gi|291012736|gb|EFE04719.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
gi|307075938|emb|CBE70801.1| outer membrane protein A [Neisseria gonorrhoeae]
Length=225
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/104 (51%), Positives = 66/104 (64%), Gaps = 0/104 (0%)
Query 223 IAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKIVA 282
+ F A+L + LN A L PD +TING+TDNTGS+ +N PLS RA+ VA
Sbjct 110 VTFATGSAALGGSAQYALNTAAQTLVQYPDTTLTINGHTDNTGSDAVNNPLSQHRAQAVA 169
Query 283 DYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVVN 326
YL RGVA + G GS P+ASNAT EGRA+NRRVEI++N
Sbjct 170 YYLQTRGVAASRLTVYGYGSHMPVASNATVEGRAQNRRVEILIN 213
>gi|288575422|ref|ZP_06393704.1| OmpA family protein [Neisseria mucosa ATCC 25996]
gi|288568103|gb|EFC89663.1| OmpA family protein [Neisseria mucosa ATCC 25996]
Length=190
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/104 (52%), Positives = 68/104 (66%), Gaps = 0/104 (0%)
Query 223 IAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKIVA 282
+ F A+L L ++ L PD +TING+TDNTG++ IN PLS RA VA
Sbjct 74 VTFATGSAALSDHARNALATASETLVQYPDTTLTINGHTDNTGNDAINEPLSRNRALAVA 133
Query 283 DYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVVN 326
DYL +RGV G + T G GS +PIASNAT EGRA+NRRVEI++N
Sbjct 134 DYLQSRGVNGSRLTTAGYGSRHPIASNATVEGRAQNRRVEILIN 177
>gi|268595437|ref|ZP_06129604.1| ompA family protein [Neisseria gonorrhoeae 35/02]
gi|268597225|ref|ZP_06131392.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
gi|268599401|ref|ZP_06133568.1| OmpA/MotB domain-containing protein [Neisseria gonorrhoeae MS11]
13 more sequence titles
Length=216
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/104 (51%), Positives = 66/104 (64%), Gaps = 0/104 (0%)
Query 223 IAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKIVA 282
+ F A+L + LN A L PD +TING+TDNTGS+ +N PLS RA+ VA
Sbjct 101 VTFATGSAALGGSAQYALNTAAQTLVQYPDTTLTINGHTDNTGSDAVNNPLSQHRAQAVA 160
Query 283 DYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVVN 326
YL RGVA + G GS P+ASNAT EGRA+NRRVEI++N
Sbjct 161 YYLQTRGVAASRLTVYGYGSHMPVASNATVEGRAQNRRVEILIN 204
>gi|254494341|ref|ZP_05107512.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|226513381|gb|EEH62726.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
Length=216
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/104 (51%), Positives = 66/104 (64%), Gaps = 0/104 (0%)
Query 223 IAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKIVA 282
+ F A+L + LN A L PD +TING+TDNTGS+ +N PLS RA+ VA
Sbjct 101 VTFATGSAALGGSAQYALNTAAQTLVQYPDTTLTINGHTDNTGSDAVNNPLSQHRAQAVA 160
Query 283 DYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVVN 326
YL RGVA + G GS P+ASNAT EGRA+NRRVEI++N
Sbjct 161 YYLQTRGVAASRLTVYGYGSHMPVASNATVEGRAQNRRVEILIN 204
>gi|329117988|ref|ZP_08246701.1| OmpA family protein [Neisseria bacilliformis ATCC BAA-1200]
gi|327465876|gb|EGF12148.1| OmpA family protein [Neisseria bacilliformis ATCC BAA-1200]
Length=226
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/76 (62%), Positives = 60/76 (79%), Gaps = 0/76 (0%)
Query 251 PDARVTINGYTDNTGSEGINIPLSAQRAKIVADYLVARGVAGDHIATVGLGSVNPIASNA 310
PD ++ING+TDNTGS+ IN PLS +RA+ VA +L +RGV G +AT G GS P+ASNA
Sbjct 137 PDTTLSINGHTDNTGSDAINAPLSQRRAQAVASFLQSRGVNGSRLATYGHGSRQPVASNA 196
Query 311 TPEGRAKNRRVEIVVN 326
T EGRA+NRRVEI++N
Sbjct 197 TAEGRAQNRRVEILIN 212
>gi|50084108|ref|YP_045618.1| outer membrane protein [Acinetobacter sp. ADP1]
gi|49530084|emb|CAG67796.1| putative outer membrane protein [Acinetobacter sp. ADP1]
Length=217
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/105 (49%), Positives = 68/105 (65%), Gaps = 0/105 (0%)
Query 221 GPIAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKI 280
G I F + +++ P Y LN+VA L + + + GYTDNTG++ INIPLS RA+
Sbjct 109 GNITFDTNKSNIKPNFYSTLNKVAQTLAEDNKSAILVTGYTDNTGNDSINIPLSQARAQS 168
Query 281 VADYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVV 325
VA+YL +GV+ I G GS NPIASNAT +GR +NRRVEI +
Sbjct 169 VANYLSGQGVSSSRINAQGYGSSNPIASNATAQGREQNRRVEISI 213
>gi|296137072|ref|YP_003644314.1| OmpA/MotB domain protein [Thiomonas intermedia K12]
gi|294341249|emb|CAZ89650.1| putative OmpA family protein [Thiomonas sp. 3As]
gi|295797194|gb|ADG31984.1| OmpA/MotB domain protein [Thiomonas intermedia K12]
Length=226
Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/101 (52%), Positives = 63/101 (63%), Gaps = 0/101 (0%)
Query 225 FGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKIVADY 284
F A L P Y IL +A L P V + G+TDNTG++ IN PLS RA V ++
Sbjct 120 FATGSAQLNPRMYPILESLATGLNQNPSETVQVFGFTDNTGTDAINYPLSENRALTVKNF 179
Query 285 LVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVV 325
LV+RGVA + T GLG NP+ASNAT +GRA NRRVEI V
Sbjct 180 LVSRGVAPQRVTTQGLGPQNPVASNATAQGRAANRRVEIYV 220
>gi|311108875|ref|YP_003981728.1| OmpA family protein 4 [Achromobacter xylosoxidans A8]
gi|310763564|gb|ADP19013.1| OmpA family protein 4 [Achromobacter xylosoxidans A8]
Length=264
Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 79/234 (34%), Positives = 113/234 (49%), Gaps = 18/234 (7%)
Query 95 GDFPDEAAKAALMTALNGLLAPGVNVIDQIHVDPVVRSLDFSSAEPVFTASVPIPDFG-- 152
G PDEA KA ++ L + G NVIDQI V VV ++S P+
Sbjct 40 GAVPDEATKADVLARLQQVYGVG-NVIDQIDVGGVVAPPNWSEHIGKLIGQ-PLKQINRG 97
Query 153 -LKVERDTVTLTGTAPSSEHKDAVKRA-ATSTWPDMKIVNNIEVTGQAPPGPPASGPCAD 210
L+++ + L G + + + A ATS P KIVN + V+ D
Sbjct 98 QLEIDGTQIRLRGEVQNEASRQQIASAFATSLNPTYKIVNGLRVSA-----------SKD 146
Query 211 LQSAINAV-TGGPIAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGI 269
Q ++ V T + F A+L E+L++VAD + +V I G+TD++GS
Sbjct 147 EQGLLDQVLTNRVVEFETGSATLTTRGRELLDKVADVVPKLHSDKVQIIGHTDSSGSRST 206
Query 270 NIPLSAQRAKIVADYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEI 323
N+ LS RA V YLV +G+ T+G G P+A+NAT EGRAKNRR+E
Sbjct 207 NLALSQARADAVKTYLVDKGLPPARFETLGAGPDQPLATNATAEGRAKNRRIEF 260
>gi|315497454|ref|YP_004086258.1| ompa/motb domain-containing protein [Asticcacaulis excentricus
CB 48]
gi|315415466|gb|ADU12107.1| OmpA/MotB domain protein [Asticcacaulis excentricus CB 48]
Length=222
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/103 (52%), Positives = 65/103 (64%), Gaps = 0/103 (0%)
Query 223 IAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKIVA 282
+ FG+ AS+ + Y +LN VA L P V I G+ D+TGS+ IN PLS RA A
Sbjct 115 VTFGSGSASIDASFYPVLNDVASILNKYPSTYVDIVGHADSTGSDAINEPLSEDRANSTA 174
Query 283 DYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVV 325
YL +RGV + G+GS PIASNATPEGRAKNRRVEI +
Sbjct 175 AYLTSRGVVNQRLFVAGMGSRQPIASNATPEGRAKNRRVEITL 217
>gi|221069812|ref|ZP_03545917.1| OmpA/MotB domain protein [Comamonas testosteroni KF-1]
gi|220714835|gb|EED70203.1| OmpA/MotB domain protein [Comamonas testosteroni KF-1]
Length=219
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/87 (58%), Positives = 63/87 (73%), Gaps = 0/87 (0%)
Query 239 ILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKIVADYLVARGVAGDHIATV 298
IL+R A+ L+ P+A V I G+TD+TGS+ IN PLS QRA+ +YL +RGV G I
Sbjct 127 ILDRFAEGLRNNPNAEVRIIGHTDSTGSDAINNPLSLQRAESTRNYLTSRGVNGARIQVQ 186
Query 299 GLGSVNPIASNATPEGRAKNRRVEIVV 325
G+GS P+ASNAT EGRA+NRRVEI V
Sbjct 187 GMGSHQPVASNATNEGRARNRRVEIFV 213
>gi|110633615|ref|YP_673823.1| OmpA/MotB [Mesorhizobium sp. BNC1]
gi|110284599|gb|ABG62658.1| OmpA/MotB [Chelativorans sp. BNC1]
Length=217
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/101 (53%), Positives = 64/101 (64%), Gaps = 0/101 (0%)
Query 223 IAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKIVA 282
I F D A + PA Y+ LN VA LK V + G+TD+TGS N+ LS +RA VA
Sbjct 109 ITFATDSADIQPAFYQTLNSVALVLKRYNQTLVDVYGHTDSTGSLQHNMQLSQRRAASVA 168
Query 283 DYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEI 323
DYL+A+G A +G G PIASNATPEGRA+NRRVEI
Sbjct 169 DYLIAQGTDSRRFAVIGQGPSQPIASNATPEGRAQNRRVEI 209
>gi|264680876|ref|YP_003280786.1| OmpA/MotB [Comamonas testosteroni CNB-2]
gi|299531878|ref|ZP_07045278.1| OmpA/MotB [Comamonas testosteroni S44]
gi|262211392|gb|ACY35490.1| OmpA/MotB [Comamonas testosteroni CNB-2]
gi|298720053|gb|EFI61010.1| OmpA/MotB [Comamonas testosteroni S44]
Length=219
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/87 (58%), Positives = 63/87 (73%), Gaps = 0/87 (0%)
Query 239 ILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKIVADYLVARGVAGDHIATV 298
IL+R A+ L+ P+A V I G+TD+TGS+ IN PLS QRA+ +YL +RGV G I
Sbjct 127 ILDRFAEGLRNNPNAEVRIIGHTDSTGSDAINNPLSLQRAESTRNYLTSRGVNGARIQVQ 186
Query 299 GLGSVNPIASNATPEGRAKNRRVEIVV 325
G+GS P+ASNAT EGRA+NRRVEI V
Sbjct 187 GMGSHQPVASNATNEGRARNRRVEIFV 213
>gi|299134013|ref|ZP_07027206.1| OmpA/MotB domain protein [Afipia sp. 1NLS2]
gi|298590760|gb|EFI50962.1| OmpA/MotB domain protein [Afipia sp. 1NLS2]
Length=464
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 119/240 (50%), Gaps = 12/240 (5%)
Query 90 TVTLIGDFPDEAAKAALMTALNGLLAPGVNVIDQIHVDPVVRSLDFSSAEPVFTASVPIP 149
T+ L G PD A AA+++A+ GV + D++ ++ +A +
Sbjct 232 TLALSGYVPDNNAHAAIVSAIERKFV-GVKIEDKLKASAGAPQGFLAATMTALSALSRLS 290
Query 150 DFGLKVERDTVTLTGTA--PSSEHKDAVKRAAT--STWPDMKIVNNIEVTGQAPPGPPAS 205
L ++ VTL+G A P + + + + AA W E+T + P +
Sbjct 291 TGTLTIQDRNVTLSGDALYPGANARISEELAAKLPQGWK-----QKAELTVKPVAAPVNA 345
Query 206 GPCADLQSAINAVTGGPIAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTG 265
C L + + + G I F A + P +L+R+ + + CP +++ I G+TD+ G
Sbjct 346 TICQQLLTGL--LAKGTIQFETGKAVIDPDSAGLLDRLIEAVLRCPTSQIEIEGHTDSNG 403
Query 266 SEGINIPLSAQRAKIVADYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVV 325
+ N+ LS +RA+ VADY + GV + I+ VG GS P+ASN T EG+A+NRR+E VV
Sbjct 404 EKEANLALSMRRAQAVADYFIKAGVPKERISAVGFGSERPVASNDTEEGKAQNRRIEFVV 463
Lambda K H
0.314 0.132 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 580252432782
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40