BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0901
Length=175
Score E
Sequences producing significant alignments: (Bits) Value
gi|15840320|ref|NP_335357.1| hypothetical protein MT0924 [Mycoba... 350 6e-95
gi|15608041|ref|NP_215416.1| hypothetical protein Rv0901 [Mycoba... 349 8e-95
gi|289446468|ref|ZP_06436212.1| hypothetical exported protein [M... 347 4e-94
gi|294996382|ref|ZP_06802073.1| hypothetical protein Mtub2_18244... 346 7e-94
gi|340625912|ref|YP_004744364.1| putative exported or membrane p... 339 7e-92
gi|240172202|ref|ZP_04750861.1| hypothetical protein MkanA1_2300... 186 1e-45
gi|342860507|ref|ZP_08717158.1| putative exported or membrane pr... 133 8e-30
gi|183984602|ref|YP_001852893.1| exported or membrane protein [M... 127 5e-28
gi|256824211|ref|YP_003148171.1| hypothetical protein Ksed_03290... 85.1 4e-15
gi|84494926|ref|ZP_00994045.1| ATP synthase subunit E [Janibacte... 69.3 2e-10
gi|2440112|emb|CAB16699.1| hypothetical protein MLCB57.59 [Mycob... 67.0 1e-09
gi|331694492|ref|YP_004330731.1| hypothetical protein Psed_0615 ... 64.3 7e-09
gi|311744808|ref|ZP_07718604.1| 50S ribosomal protein L4 [Aeromi... 63.2 1e-08
gi|309811763|ref|ZP_07705539.1| conserved hypothetical protein [... 62.0 4e-08
gi|116671088|ref|YP_832021.1| hypothetical protein Arth_2542 [Ar... 59.3 2e-07
gi|257069507|ref|YP_003155762.1| 50S ribosomal protein L4 [Brach... 58.9 3e-07
gi|317125839|ref|YP_004099951.1| 50S ribosomal protein L17P [Int... 55.1 3e-06
gi|284033970|ref|YP_003383901.1| 50S ribosomal protein L17 [Krib... 55.1 4e-06
gi|159901133|ref|YP_001547380.1| 30S ribosomal protein S16 [Herp... 54.7 5e-06
gi|333989461|ref|YP_004522075.1| hypothetical protein JDM601_082... 52.8 2e-05
gi|331699175|ref|YP_004335414.1| 50S ribosomal protein L4/L1e [P... 52.0 3e-05
gi|134103315|ref|YP_001108976.1| hypothetical protein SACE_6887 ... 49.7 2e-04
gi|291004466|ref|ZP_06562439.1| hypothetical protein SeryN2_0809... 49.7 2e-04
gi|324999253|ref|ZP_08120365.1| 50S ribosomal protein L17 [Pseud... 49.3 2e-04
gi|84494785|ref|ZP_00993904.1| 50S ribosomal protein L4 [Janibac... 47.0 0.001
gi|284032834|ref|YP_003382765.1| hypothetical protein Kfla_4950 ... 47.0 0.001
gi|331699144|ref|YP_004335383.1| 50S ribosomal protein L17 [Pseu... 46.6 0.001
gi|333991104|ref|YP_004523718.1| hypothetical protein JDM601_246... 45.4 0.003
gi|340775951|gb|EGR98004.1| hypothetical protein HMPREF1162_0639... 44.3 0.007
gi|314968040|gb|EFT12139.1| conserved hypothetical protein [Prop... 44.3 0.008
gi|289426823|ref|ZP_06428549.1| conserved hypothetical protein [... 43.9 0.008
gi|313807204|gb|EFS45691.1| conserved hypothetical protein [Prop... 43.9 0.008
gi|163840857|ref|YP_001625262.1| 50S ribosomal protein L17 [Reni... 43.9 0.008
gi|328760392|gb|EGF73961.1| hypothetical protein HMPREF9343_0190... 43.9 0.009
gi|313837501|gb|EFS75215.1| conserved hypothetical protein [Prop... 43.1 0.016
gi|84494743|ref|ZP_00993862.1| 50S ribosomal protein L17 [Janiba... 42.7 0.021
gi|296141061|ref|YP_003648304.1| 50S ribosomal protein L17 [Tsuk... 42.0 0.038
gi|289706560|ref|ZP_06502910.1| ribosomal protein L17 [Micrococc... 41.6 0.042
gi|239918172|ref|YP_002957730.1| 50S ribosomal protein L17P [Mic... 41.6 0.043
gi|282854300|ref|ZP_06263637.1| conserved hypothetical protein [... 41.6 0.048
gi|50842205|ref|YP_055432.1| putative regulatory protein [Propio... 41.6 0.049
gi|315103204|gb|EFT75180.1| conserved hypothetical protein [Prop... 41.2 0.061
gi|314966433|gb|EFT10532.1| conserved hypothetical protein [Prop... 41.2 0.062
gi|314923291|gb|EFS87122.1| conserved hypothetical protein [Prop... 41.2 0.064
gi|315091673|gb|EFT63649.1| conserved hypothetical protein [Prop... 40.4 0.097
gi|119964246|ref|YP_947380.1| ribosomal protein L20 [Arthrobacte... 40.0 0.13
gi|300742029|ref|ZP_07072050.1| ribosomal protein L17 [Rothia de... 39.7 0.15
gi|308176902|ref|YP_003916308.1| 50S ribosomal protein L20 [Arth... 39.7 0.16
gi|297567683|ref|YP_003686654.1| hypothetical protein Mesil_3332... 39.3 0.22
gi|313824893|gb|EFS62607.1| ribosomal protein L4/L1 family prote... 39.3 0.22
>gi|15840320|ref|NP_335357.1| hypothetical protein MT0924 [Mycobacterium tuberculosis CDC1551]
gi|308375286|ref|ZP_07443411.2| hypothetical protein TMGG_02966 [Mycobacterium tuberculosis SUMu007]
gi|308377543|ref|ZP_07479601.2| hypothetical protein TMIG_03456 [Mycobacterium tuberculosis SUMu009]
gi|13880483|gb|AAK45171.1| hypothetical protein MT0924 [Mycobacterium tuberculosis CDC1551]
gi|308346759|gb|EFP35610.1| hypothetical protein TMGG_02966 [Mycobacterium tuberculosis SUMu007]
gi|308355335|gb|EFP44186.1| hypothetical protein TMIG_03456 [Mycobacterium tuberculosis SUMu009]
gi|328459814|gb|AEB05237.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
4207]
Length=176
Score = 350 bits (897), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 175/175 (100%), Positives = 175/175 (100%), Gaps = 0/175 (0%)
Query 1 MEHVHWWLAGLAFTLGMVLTSTLMVRPVEHQVLVKKSVRGSSAKSKPPTARKPAVKSGTK 60
MEHVHWWLAGLAFTLGMVLTSTLMVRPVEHQVLVKKSVRGSSAKSKPPTARKPAVKSGTK
Sbjct 2 MEHVHWWLAGLAFTLGMVLTSTLMVRPVEHQVLVKKSVRGSSAKSKPPTARKPAVKSGTK 61
Query 61 REESPTAKTKVATESAAEQIPVAGEPAAEPIPVAGEPAARIPVVPYAPYGPGSARAGADG 120
REESPTAKTKVATESAAEQIPVAGEPAAEPIPVAGEPAARIPVVPYAPYGPGSARAGADG
Sbjct 62 REESPTAKTKVATESAAEQIPVAGEPAAEPIPVAGEPAARIPVVPYAPYGPGSARAGADG 121
Query 121 SGPQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESAARAFFTPWRKSTRRT 175
SGPQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESAARAFFTPWRKSTRRT
Sbjct 122 SGPQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESAARAFFTPWRKSTRRT 176
>gi|15608041|ref|NP_215416.1| hypothetical protein Rv0901 [Mycobacterium tuberculosis H37Rv]
gi|31792089|ref|NP_854582.1| hypothetical protein Mb0925 [Mycobacterium bovis AF2122/97]
gi|121636824|ref|YP_977047.1| putative exported or membrane protein [Mycobacterium bovis BCG
str. Pasteur 1173P2]
68 more sequence titles
Length=175
Score = 349 bits (896), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 175/175 (100%), Positives = 175/175 (100%), Gaps = 0/175 (0%)
Query 1 MEHVHWWLAGLAFTLGMVLTSTLMVRPVEHQVLVKKSVRGSSAKSKPPTARKPAVKSGTK 60
MEHVHWWLAGLAFTLGMVLTSTLMVRPVEHQVLVKKSVRGSSAKSKPPTARKPAVKSGTK
Sbjct 1 MEHVHWWLAGLAFTLGMVLTSTLMVRPVEHQVLVKKSVRGSSAKSKPPTARKPAVKSGTK 60
Query 61 REESPTAKTKVATESAAEQIPVAGEPAAEPIPVAGEPAARIPVVPYAPYGPGSARAGADG 120
REESPTAKTKVATESAAEQIPVAGEPAAEPIPVAGEPAARIPVVPYAPYGPGSARAGADG
Sbjct 61 REESPTAKTKVATESAAEQIPVAGEPAAEPIPVAGEPAARIPVVPYAPYGPGSARAGADG 120
Query 121 SGPQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESAARAFFTPWRKSTRRT 175
SGPQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESAARAFFTPWRKSTRRT
Sbjct 121 SGPQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESAARAFFTPWRKSTRRT 175
>gi|289446468|ref|ZP_06436212.1| hypothetical exported protein [Mycobacterium tuberculosis CPHL_A]
gi|289419426|gb|EFD16627.1| hypothetical exported protein [Mycobacterium tuberculosis CPHL_A]
Length=175
Score = 347 bits (890), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 174/175 (99%), Positives = 174/175 (99%), Gaps = 0/175 (0%)
Query 1 MEHVHWWLAGLAFTLGMVLTSTLMVRPVEHQVLVKKSVRGSSAKSKPPTARKPAVKSGTK 60
MEHVHWWLAGLAFTLGMVLTSTLMVRPVEHQVLVKKSVRGSSAKSKPPTARKPAVKSGTK
Sbjct 1 MEHVHWWLAGLAFTLGMVLTSTLMVRPVEHQVLVKKSVRGSSAKSKPPTARKPAVKSGTK 60
Query 61 REESPTAKTKVATESAAEQIPVAGEPAAEPIPVAGEPAARIPVVPYAPYGPGSARAGADG 120
REESPTAKTKVAT SAAEQIPVAGEPAAEPIPVAGEPAARIPVVPYAPYGPGSARAGADG
Sbjct 61 REESPTAKTKVATASAAEQIPVAGEPAAEPIPVAGEPAARIPVVPYAPYGPGSARAGADG 120
Query 121 SGPQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESAARAFFTPWRKSTRRT 175
SGPQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESAARAFFTPWRKSTRRT
Sbjct 121 SGPQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESAARAFFTPWRKSTRRT 175
>gi|294996382|ref|ZP_06802073.1| hypothetical protein Mtub2_18244 [Mycobacterium tuberculosis
210]
Length=175
Score = 346 bits (888), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 174/175 (99%), Positives = 174/175 (99%), Gaps = 0/175 (0%)
Query 1 MEHVHWWLAGLAFTLGMVLTSTLMVRPVEHQVLVKKSVRGSSAKSKPPTARKPAVKSGTK 60
MEHVHWWLAGLAFTLGMVLTSTLMVRPVEHQVLVKKSVRGSSAKSKPPTARKPAVKSGTK
Sbjct 1 MEHVHWWLAGLAFTLGMVLTSTLMVRPVEHQVLVKKSVRGSSAKSKPPTARKPAVKSGTK 60
Query 61 REESPTAKTKVATESAAEQIPVAGEPAAEPIPVAGEPAARIPVVPYAPYGPGSARAGADG 120
REESPTAKTKVATESAAEQIPVAGEPAAEPIPVAGEPAARIPVVPYAPYGPGSARAGADG
Sbjct 61 REESPTAKTKVATESAAEQIPVAGEPAAEPIPVAGEPAARIPVVPYAPYGPGSARAGADG 120
Query 121 SGPQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESAARAFFTPWRKSTRRT 175
SGPQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESAARAFFT WRKSTRRT
Sbjct 121 SGPQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESAARAFFTLWRKSTRRT 175
>gi|340625912|ref|YP_004744364.1| putative exported or membrane protein [Mycobacterium canettii
CIPT 140010059]
gi|340004102|emb|CCC43239.1| putative conserved exported or membrane protein [Mycobacterium
canettii CIPT 140010059]
Length=175
Score = 339 bits (870), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 170/175 (98%), Positives = 171/175 (98%), Gaps = 0/175 (0%)
Query 1 MEHVHWWLAGLAFTLGMVLTSTLMVRPVEHQVLVKKSVRGSSAKSKPPTARKPAVKSGTK 60
MEHVHWWLAGLAFTLGMVLTSTLMVRPVEHQVLVKKS RGSSAKSKPPTARKPAVKSGT
Sbjct 1 MEHVHWWLAGLAFTLGMVLTSTLMVRPVEHQVLVKKSARGSSAKSKPPTARKPAVKSGTT 60
Query 61 REESPTAKTKVATESAAEQIPVAGEPAAEPIPVAGEPAARIPVVPYAPYGPGSARAGADG 120
REESPTAKTKVATESAAEQIPVAGEPAAE IPVAGEPAARIPVVPYAPYGPGSARA ADG
Sbjct 61 REESPTAKTKVATESAAEQIPVAGEPAAEQIPVAGEPAARIPVVPYAPYGPGSARADADG 120
Query 121 SGPQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESAARAFFTPWRKSTRRT 175
SGPQGWLVKGRSDTRLYYTP+DPTYDPTVAQVWFQDEESAARAFFTPWRKSTRRT
Sbjct 121 SGPQGWLVKGRSDTRLYYTPDDPTYDPTVAQVWFQDEESAARAFFTPWRKSTRRT 175
>gi|240172202|ref|ZP_04750861.1| hypothetical protein MkanA1_23004 [Mycobacterium kansasii ATCC
12478]
Length=195
Score = 186 bits (472), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 109/192 (57%), Positives = 125/192 (66%), Gaps = 21/192 (10%)
Query 3 HVHWWLAGLAFTLGMVLTSTLMVRPVEHQVLVKKSVRGSSAKSKPPTA------------ 50
HVHWWL GLAF LGM+LT TLMV PV+ Q+ KS +K TA
Sbjct 4 HVHWWLVGLAFALGMLLTFTLMVGPVKEQLPQHKSGTMPRRPAKKATAAETPRKRAVAHK 63
Query 51 RKPAVK--SGTKREESPTAKTKVATESA------AEQIPVAGEPAAEPIPVAGEPAARIP 102
R PA K + K E+P A T E A A+Q+P A E +AE V GE + + P
Sbjct 64 RAPAKKIPAAKKVPETPDADTASTQEIAPAKVTPAQQVPDATESSAEQTVVIGESSLQSP 123
Query 103 VVPYAPYGPGSARAGADGSGPQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESAAR 162
+APYGPGSARAGADGSGP+GWLVKGR+DTRLYYTP+DP YD TVAQVWFQDE +AAR
Sbjct 124 AR-FAPYGPGSARAGADGSGPEGWLVKGRTDTRLYYTPDDPDYDATVAQVWFQDEGAAAR 182
Query 163 AFFTPWRKSTRR 174
AFFTPWRKS RR
Sbjct 183 AFFTPWRKSARR 194
>gi|342860507|ref|ZP_08717158.1| putative exported or membrane protein [Mycobacterium colombiense
CECT 3035]
gi|342132162|gb|EGT85403.1| putative exported or membrane protein [Mycobacterium colombiense
CECT 3035]
Length=156
Score = 133 bits (335), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 77/169 (46%), Positives = 99/169 (59%), Gaps = 21/169 (12%)
Query 4 VHWWLAGLAFTLGMVLTSTLMVRPVEHQVLVKKSVRGSSAKSKPPTARKPAVKSGTKREE 63
+HWWL GL+F LG LT TL + PV+ Q V KS G+ +P TA P + T
Sbjct 1 MHWWLVGLSFGLGFALTLTLKMTPVKSQAPVSKSP-GTGTAPEPATAAIPVTEKRT---- 55
Query 64 SPTAKTKV-ATESAAEQIPVAGEPAAEPIPVAGEPAARIPVVPYAPYGPGSARAGADGSG 122
TK+ TE +IP+A EP P +IP P APYGPGSA DG G
Sbjct 56 -----TKIPVTERRTTKIPIAKEP----------PTTKIPPSPRAPYGPGSADPDPDGRG 100
Query 123 PQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESAARAFFTPWRKS 171
P G+L+K R + ++Y+TP+DP+YD T A+VWF DE+SA +A FTPWR S
Sbjct 101 PAGYLIKARGNGKVYFTPDDPSYDSTAAEVWFSDEKSAQQAGFTPWRDS 149
>gi|183984602|ref|YP_001852893.1| exported or membrane protein [Mycobacterium marinum M]
gi|183177928|gb|ACC43038.1| conserved exported or membrane protein [Mycobacterium marinum
M]
Length=212
Score = 127 bits (320), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 91/211 (44%), Positives = 115/211 (55%), Gaps = 37/211 (17%)
Query 1 MEHVHWWLAGLAFTLGMVLTSTLMVRPVEHQVLVKKSVRGSSA---KSKPPTAR----KP 53
M HVHWWL L+F LG+VLT LMVR ++QV S G+ A ++KPP + +P
Sbjct 1 MAHVHWWLIILSFLLGLVLTCALMVRSTKYQVAAAASGAGADAADAETKPPAMKTATAEP 60
Query 54 AVKSGTKREESPTA------------------------KTKVATESAAEQIPVAGEPAAE 89
K E++P K V A+++P A+
Sbjct 61 REKKAATGEDAPKKKVPGAKKKTAAAKKAAARKIAGARKRPVKRMVGAKRVPKKKVARAK 120
Query 90 PIPVAG------EPAARIPVVPYAPYGPGSARAGADGSGPQGWLVKGRSDTRLYYTPEDP 143
P AA++ +APYGPGSARA ADG+GPQGW+VKGR+DTR YYTPED
Sbjct 121 RAPTEKTAVTEESSAAQLAPGRFAPYGPGSARADADGTGPQGWVVKGRTDTRHYYTPEDS 180
Query 144 TYDPTVAQVWFQDEESAARAFFTPWRKSTRR 174
+Y+ T AQVWFQDE +AARAFFT W KST R
Sbjct 181 SYETTCAQVWFQDEAAAARAFFTAWSKSTHR 211
>gi|256824211|ref|YP_003148171.1| hypothetical protein Ksed_03290 [Kytococcus sedentarius DSM 20547]
gi|256687604|gb|ACV05406.1| hypothetical protein Ksed_03290 [Kytococcus sedentarius DSM 20547]
Length=385
Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/135 (40%), Positives = 68/135 (51%), Gaps = 8/135 (5%)
Query 45 SKPPTARKPAVKSGTKREESPTAK------TKVATESAAEQIPVAGEPAAEPIPVAGEPA 98
S T P V G E+ A E A E P+A P A + + +
Sbjct 253 SDAHTEAIPMVGQGMTDEDVDAASADDLQPVDADAEYADEVDPIA--PDASFLEDSEDVD 310
Query 99 ARIPVVPYAPYGPGSARAGADGSGPQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEE 158
V APYGPGSAR+ ADGSGP+GW +KG +D+ L++T E P Y+ T A+VWF DE
Sbjct 311 GDEAVEDDAPYGPGSARSAADGSGPEGWAIKGNADSGLFHTEESPGYENTRAEVWFADEA 370
Query 159 SAARAFFTPWRKSTR 173
SA A F W + R
Sbjct 371 SAIAAGFRHWDRKQR 385
>gi|84494926|ref|ZP_00994045.1| ATP synthase subunit E [Janibacter sp. HTCC2649]
gi|84384419|gb|EAQ00299.1| ATP synthase subunit E [Janibacter sp. HTCC2649]
Length=417
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/58 (54%), Positives = 43/58 (75%), Gaps = 0/58 (0%)
Query 109 YGPGSARAGADGSGPQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESAARAFFT 166
+G G+A A ADGSGP GW +KG +++ L++TP+ P Y T A+VWF+DEE+A A FT
Sbjct 348 FGDGTADAAADGSGPAGWDIKGNANSMLFHTPKSPWYGRTRAEVWFRDEEAATAAGFT 405
>gi|2440112|emb|CAB16699.1| hypothetical protein MLCB57.59 [Mycobacterium leprae]
Length=113
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/55 (55%), Positives = 38/55 (70%), Gaps = 0/55 (0%)
Query 120 GSGPQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESAARAFFTPWRKSTRR 174
+G + LVK RS R YY +D TYD VAQ+ F+D E A RA+FTPWRKS+R+
Sbjct 59 AAGRRDELVKSRSYIRFYYMLDDRTYDSAVAQIGFEDTEYAKRAYFTPWRKSSRK 113
>gi|331694492|ref|YP_004330731.1| hypothetical protein Psed_0615 [Pseudonocardia dioxanivorans
CB1190]
gi|326949181|gb|AEA22878.1| hypothetical protein Psed_0615 [Pseudonocardia dioxanivorans
CB1190]
Length=457
Score = 64.3 bits (155), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/120 (39%), Positives = 64/120 (54%), Gaps = 3/120 (2%)
Query 57 SGTKREESPTAKTKVATESAAEQIPVAGEPAAEPIPVAGEPAARIPVVPYAPYGPGSARA 116
S + R S A + AT ++ + AG AA+P+ A P APYGPGSA
Sbjct 338 SASGRAPSGRAGSGKATSASTRRGKGAGTAAAQPLASAPVAVHEAESAPGAPYGPGSAAP 397
Query 117 GADGS--GPQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESAARAFFTPWRKSTRR 174
DGS GP+ + +KG + + L++TPE P Y T A+ WF E+A RA FT W+ R+
Sbjct 398 LPDGSAPGPE-YTIKGNAGSMLFHTPESPYYGRTKAEAWFSSPEAATRAGFTEWKPKRRK 456
>gi|311744808|ref|ZP_07718604.1| 50S ribosomal protein L4 [Aeromicrobium marinum DSM 15272]
gi|311311925|gb|EFQ81846.1| 50S ribosomal protein L4 [Aeromicrobium marinum DSM 15272]
Length=323
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/58 (52%), Positives = 39/58 (68%), Gaps = 0/58 (0%)
Query 108 PYGPGSARAGADGSGPQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESAARAFF 165
PYGPGS G+ P+G +KG +D+ ++TP+ P YD TVA+VWF EESAA A F
Sbjct 261 PYGPGSKAPLKSGNAPKGHEIKGNADSMKFHTPDSPWYDQTVAEVWFDSEESAAAAGF 318
>gi|309811763|ref|ZP_07705539.1| conserved hypothetical protein [Dermacoccus sp. Ellin185]
gi|308434286|gb|EFP58142.1| conserved hypothetical protein [Dermacoccus sp. Ellin185]
Length=258
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/67 (45%), Positives = 41/67 (62%), Gaps = 1/67 (1%)
Query 108 PYGPGSARAGADGSGPQ-GWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESAARAFFT 166
P+GPGSA DGS P + +KG +DT L++T E P+Y+ T A+VWF ++A A F
Sbjct 192 PFGPGSAEPNEDGSAPSPAYTIKGNADTMLFHTHESPSYEQTEAEVWFTSVDAAKAAMFR 251
Query 167 PWRKSTR 173
W S R
Sbjct 252 HWNPSQR 258
>gi|116671088|ref|YP_832021.1| hypothetical protein Arth_2542 [Arthrobacter sp. FB24]
gi|116611197|gb|ABK03921.1| hypothetical protein Arth_2542 [Arthrobacter sp. FB24]
Length=365
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/64 (46%), Positives = 38/64 (60%), Gaps = 0/64 (0%)
Query 108 PYGPGSARAGADGSGPQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESAARAFFTP 167
PYG GSA G DGSGP G+ VKG + + +Y+ P Y+ T A+VWF+ A A F
Sbjct 300 PYGEGSAAPGPDGSGPDGYTVKGNAQSMIYHDETSPGYEETTAEVWFESAAHAEAAGFRA 359
Query 168 WRKS 171
R+S
Sbjct 360 PRRS 363
>gi|257069507|ref|YP_003155762.1| 50S ribosomal protein L4 [Brachybacterium faecium DSM 4810]
gi|256560325|gb|ACU86172.1| LSU ribosomal protein L4P [Brachybacterium faecium DSM 4810]
Length=312
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/57 (50%), Positives = 38/57 (67%), Gaps = 0/57 (0%)
Query 109 YGPGSARAGADGSGPQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESAARAFF 165
YG GSA A ADGS P+G+ +KG ++ ++TP+ P Y T A+VWF EE+A A F
Sbjct 240 YGEGSAAATADGSAPEGYAIKGNQGSKKFHTPDSPWYGRTKAEVWFATEEAAKAAGF 296
>gi|317125839|ref|YP_004099951.1| 50S ribosomal protein L17P [Intrasporangium calvum DSM 43043]
gi|315589927|gb|ADU49224.1| LSU ribosomal protein L17P [Intrasporangium calvum DSM 43043]
Length=263
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/54 (47%), Positives = 35/54 (65%), Gaps = 0/54 (0%)
Query 112 GSARAGADGSGPQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESAARAFF 165
G+A A DGS P+G+ VKG +D+ LY+ P+ YD T+A+ WF+ E A A F
Sbjct 202 GAAPANEDGSAPEGYTVKGNADSGLYHEPDGQWYDATIAEFWFKSAEDAEAAGF 255
>gi|284033970|ref|YP_003383901.1| 50S ribosomal protein L17 [Kribbella flavida DSM 17836]
gi|283813263|gb|ADB35102.1| ribosomal protein L17 [Kribbella flavida DSM 17836]
Length=230
Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/55 (48%), Positives = 37/55 (68%), Gaps = 0/55 (0%)
Query 112 GSARAGADGSGPQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESAARAFFT 166
GSA ADGS P+G+ +KG ++ Y+TP+ P Y+ T A+VWF E++A A FT
Sbjct 168 GSAAPTADGSAPEGFDIKGNENSMKYHTPDSPWYEQTEAEVWFSTEDAATAAGFT 222
>gi|159901133|ref|YP_001547380.1| 30S ribosomal protein S16 [Herpetosiphon aurantiacus DSM 785]
gi|226697843|sp|A9B0N4.1|RS16_HERA2 RecName: Full=30S ribosomal protein S16
gi|159894172|gb|ABX07252.1| ribosomal protein S16 [Herpetosiphon aurantiacus DSM 785]
Length=191
Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/61 (46%), Positives = 38/61 (63%), Gaps = 1/61 (1%)
Query 112 GSARAGADGSGPQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESA-ARAFFTPWRK 170
GS R ADGS P+G+ +KG ++ LY+ P Y+ TVA++WF ESA A F P +K
Sbjct 129 GSVRPLADGSAPEGYAIKGNQNSMLYHVPGSRYYNSTVAELWFDTVESAEAAGFRAPGQK 188
Query 171 S 171
S
Sbjct 189 S 189
>gi|333989461|ref|YP_004522075.1| hypothetical protein JDM601_0821 [Mycobacterium sp. JDM601]
gi|333485429|gb|AEF34821.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=114
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/72 (52%), Positives = 49/72 (69%), Gaps = 0/72 (0%)
Query 104 VPYAPYGPGSARAGADGSGPQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESAARA 163
V APYG GSARAG GSGP GW +KG D+ LY+ + P+Y+ T+A+VWF+DE++AA A
Sbjct 43 VAAAPYGDGSARAGGGGSGPAGWTIKGNEDSMLYHGLDSPSYEATIAEVWFKDEQTAAAA 102
Query 164 FFTPWRKSTRRT 175
F W +T
Sbjct 103 GFQRWDSRREQT 114
>gi|331699175|ref|YP_004335414.1| 50S ribosomal protein L4/L1e [Pseudonocardia dioxanivorans CB1190]
gi|326953864|gb|AEA27561.1| ribosomal protein L4/L1e [Pseudonocardia dioxanivorans CB1190]
Length=308
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/60 (47%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query 107 APYGPGSARAGADGS-GPQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESAARAFF 165
AP+GPGS D S P+G+ +KG D++LY+ P YD TVA+VWF E A A F
Sbjct 234 APHGPGSHAPLDDVSVAPEGFPIKGNEDSKLYHVPGSAFYDRTVAEVWFATEADAEAAGF 293
>gi|134103315|ref|YP_001108976.1| hypothetical protein SACE_6887 [Saccharopolyspora erythraea NRRL
2338]
gi|133915938|emb|CAM06051.1| hypothetical protein SACE_6887 [Saccharopolyspora erythraea NRRL
2338]
Length=468
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/52 (45%), Positives = 32/52 (62%), Gaps = 0/52 (0%)
Query 124 QGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESAARAFFTPWRKSTRRT 175
+G++VKG +R Y+TPE P Y+ VA+VWF+ A +A F PW R T
Sbjct 417 EGYMVKGHFASRQYHTPESPQYERIVAEVWFRTAADAEQAGFEPWDGRPRNT 468
>gi|291004466|ref|ZP_06562439.1| hypothetical protein SeryN2_08092 [Saccharopolyspora erythraea
NRRL 2338]
Length=467
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/52 (45%), Positives = 32/52 (62%), Gaps = 0/52 (0%)
Query 124 QGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESAARAFFTPWRKSTRRT 175
+G++VKG +R Y+TPE P Y+ VA+VWF+ A +A F PW R T
Sbjct 416 EGYMVKGHFASRQYHTPESPQYERIVAEVWFRTAADAEQAGFEPWDGRPRNT 467
>gi|324999253|ref|ZP_08120365.1| 50S ribosomal protein L17 [Pseudonocardia sp. P1]
Length=237
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/49 (47%), Positives = 30/49 (62%), Gaps = 1/49 (2%)
Query 107 APYGPGSARAGAD-GSGPQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWF 154
APYG GS D P+G+ +KG D++LY+ P YD TVA+VWF
Sbjct 167 APYGEGSHAPLEDPAQAPEGFEIKGNDDSKLYHVPGSSHYDRTVAEVWF 215
>gi|84494785|ref|ZP_00993904.1| 50S ribosomal protein L4 [Janibacter sp. HTCC2649]
gi|84384278|gb|EAQ00158.1| 50S ribosomal protein L4 [Janibacter sp. HTCC2649]
Length=331
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/59 (39%), Positives = 33/59 (56%), Gaps = 0/59 (0%)
Query 109 YGPGSARAGADGSGPQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESAARAFFTP 167
+G S A DG+ P G+ +KG D+ Y+ P YD T A+VWF+ ++A A F P
Sbjct 259 FGSDSHAALEDGTAPAGFGIKGNKDSMKYHVPGSRWYDATEAEVWFRTADAAKAAGFVP 317
>gi|284032834|ref|YP_003382765.1| hypothetical protein Kfla_4950 [Kribbella flavida DSM 17836]
gi|283812127|gb|ADB33966.1| hypothetical protein Kfla_4950 [Kribbella flavida DSM 17836]
Length=203
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/57 (44%), Positives = 32/57 (57%), Gaps = 0/57 (0%)
Query 109 YGPGSARAGADGSGPQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESAARAFF 165
YGPGSA A P G+ +KG + L++TP+ P Y T VWF+ E A RA F
Sbjct 128 YGPGSADAVPHQGPPDGFRIKGVVGSMLFHTPQSPDYGRTRPDVWFRTEADAVRAGF 184
>gi|331699144|ref|YP_004335383.1| 50S ribosomal protein L17 [Pseudonocardia dioxanivorans CB1190]
gi|326953833|gb|AEA27530.1| 50S ribosomal protein L17 [Pseudonocardia dioxanivorans CB1190]
Length=245
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/49 (47%), Positives = 30/49 (62%), Gaps = 1/49 (2%)
Query 107 APYGPGSARAGAD-GSGPQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWF 154
APYG GS D P+G+ +KG +D+ LY+ P YD TVA+VWF
Sbjct 161 APYGEGSHAPLDDPQQAPEGFEIKGNADSMLYHVPGSAFYDRTVAEVWF 209
>gi|333991104|ref|YP_004523718.1| hypothetical protein JDM601_2464 [Mycobacterium sp. JDM601]
gi|333487072|gb|AEF36464.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=636
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/44 (44%), Positives = 28/44 (64%), Gaps = 0/44 (0%)
Query 123 PQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESAARAFFT 166
P G+ +K + LYYTP++ YD T+A++WF EE+A FT
Sbjct 590 PDGYPIKANIGSGLYYTPQNALYDDTLAEIWFATEEAARLNGFT 633
>gi|340775951|gb|EGR98004.1| hypothetical protein HMPREF1162_0639 [Propionibacterium acnes
SK182B-JCVI]
Length=447
Score = 44.3 bits (103), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/44 (44%), Positives = 27/44 (62%), Gaps = 0/44 (0%)
Query 123 PQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESAARAFFT 166
P+G+++KG + Y+ P YD T+A VWF EE+A A FT
Sbjct 400 PEGYVIKGNDRSMKYHVPGSGGYDRTIADVWFATEEAAQAAGFT 443
>gi|314968040|gb|EFT12139.1| conserved hypothetical protein [Propionibacterium acnes HL037PA1]
Length=371
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/44 (44%), Positives = 27/44 (62%), Gaps = 0/44 (0%)
Query 123 PQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESAARAFFT 166
P+G+++KG + Y+ P YD T+A VWF EE+A A FT
Sbjct 324 PEGYVIKGNDRSMKYHVPGSGGYDRTIADVWFATEEAAQAAGFT 367
>gi|289426823|ref|ZP_06428549.1| conserved hypothetical protein [Propionibacterium acnes J165]
gi|295130294|ref|YP_003580957.1| hypothetical protein HMPREF0675_3787 [Propionibacterium acnes
SK137]
gi|335051812|ref|ZP_08544720.1| hypothetical protein HMPREF9947_1140 [Propionibacterium sp. 409-HC1]
58 more sequence titles
Length=371
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/44 (44%), Positives = 27/44 (62%), Gaps = 0/44 (0%)
Query 123 PQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESAARAFFT 166
P+G+++KG + Y+ P YD T+A VWF EE+A A FT
Sbjct 324 PEGYVIKGNDRSMKYHVPGSGGYDRTIADVWFATEEAAQAAGFT 367
>gi|313807204|gb|EFS45691.1| conserved hypothetical protein [Propionibacterium acnes HL087PA2]
Length=371
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/44 (44%), Positives = 27/44 (62%), Gaps = 0/44 (0%)
Query 123 PQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESAARAFFT 166
P+G+++KG + Y+ P YD T+A VWF EE+A A FT
Sbjct 324 PEGYVIKGNDRSMKYHVPGSGGYDRTIADVWFATEEAAQAAGFT 367
>gi|163840857|ref|YP_001625262.1| 50S ribosomal protein L17 [Renibacterium salmoninarum ATCC 33209]
gi|162954333|gb|ABY23848.1| LSU ribosomal protein L17 [Renibacterium salmoninarum ATCC 33209]
Length=239
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/45 (45%), Positives = 26/45 (58%), Gaps = 0/45 (0%)
Query 123 PQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESAARAFFTP 167
P+G+ +KG D+ Y+ P YD TVA+VWF E A A F P
Sbjct 182 PEGFDIKGNEDSMKYHVPGSRWYDNTVAEVWFATAEDAKAAGFVP 226
>gi|328760392|gb|EGF73961.1| hypothetical protein HMPREF9343_01909 [Propionibacterium acnes
HL099PA1]
Length=316
Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/44 (44%), Positives = 27/44 (62%), Gaps = 0/44 (0%)
Query 123 PQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESAARAFFT 166
P+G+++KG + Y+ P YD T+A VWF EE+A A FT
Sbjct 269 PEGYVIKGNDRSMKYHVPGSGGYDRTIADVWFATEEAAQAAGFT 312
>gi|313837501|gb|EFS75215.1| conserved hypothetical protein [Propionibacterium acnes HL037PA2]
gi|314929287|gb|EFS93118.1| conserved hypothetical protein [Propionibacterium acnes HL044PA1]
gi|314971708|gb|EFT15806.1| conserved hypothetical protein [Propionibacterium acnes HL037PA3]
gi|328906953|gb|EGG26719.1| putative regulatory protein [Propionibacterium humerusii P08]
Length=379
Score = 43.1 bits (100), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/44 (41%), Positives = 26/44 (60%), Gaps = 0/44 (0%)
Query 123 PQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESAARAFFT 166
P+G+++KG + Y+ P YD T+A VWF EE+A FT
Sbjct 332 PEGYVIKGNDRSMKYHVPGSGGYDRTIADVWFATEEAAQAVGFT 375
>gi|84494743|ref|ZP_00993862.1| 50S ribosomal protein L17 [Janibacter sp. HTCC2649]
gi|84384236|gb|EAQ00116.1| 50S ribosomal protein L17 [Janibacter sp. HTCC2649]
Length=237
Score = 42.7 bits (99), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/49 (41%), Positives = 27/49 (56%), Gaps = 0/49 (0%)
Query 119 DGSGPQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESAARAFFTP 167
DGS P+G+ VKG +D+ Y+ YD T A+ WF + A A F P
Sbjct 176 DGSAPEGYSVKGNADSGKYHVEGSQWYDQTEAEFWFASADDAKAAGFEP 224
>gi|296141061|ref|YP_003648304.1| 50S ribosomal protein L17 [Tsukamurella paurometabola DSM 20162]
gi|296029195|gb|ADG79965.1| ribosomal protein L17 [Tsukamurella paurometabola DSM 20162]
Length=233
Score = 42.0 bits (97), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 14/32 (44%), Positives = 24/32 (75%), Gaps = 0/32 (0%)
Query 123 PQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWF 154
P+G+ +KG +D++LY+ P +D TVA++WF
Sbjct 180 PEGFPIKGNADSKLYHKPGTRFFDSTVAEIWF 211
>gi|289706560|ref|ZP_06502910.1| ribosomal protein L17 [Micrococcus luteus SK58]
gi|289556695|gb|EFD50036.1| ribosomal protein L17 [Micrococcus luteus SK58]
Length=242
Score = 41.6 bits (96), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/49 (41%), Positives = 26/49 (54%), Gaps = 0/49 (0%)
Query 119 DGSGPQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESAARAFFTP 167
DGS P +KG + ++ Y+ P YD T A+VWF E A A F P
Sbjct 184 DGSAPAEATIKGNASSKKYHVPGSRWYDQTTAEVWFSTVEEAKAAGFEP 232
>gi|239918172|ref|YP_002957730.1| 50S ribosomal protein L17P [Micrococcus luteus NCTC 2665]
gi|281415638|ref|ZP_06247380.1| 50S ribosomal protein L17 [Micrococcus luteus NCTC 2665]
gi|239839379|gb|ACS31176.1| LSU ribosomal protein L17P [Micrococcus luteus NCTC 2665]
Length=242
Score = 41.6 bits (96), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/49 (41%), Positives = 26/49 (54%), Gaps = 0/49 (0%)
Query 119 DGSGPQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESAARAFFTP 167
DGS P +KG + ++ Y+ P YD T A+VWF E A A F P
Sbjct 184 DGSAPAEATIKGNASSKKYHVPGSRWYDQTTAEVWFSTVEEAKAAGFEP 232
>gi|282854300|ref|ZP_06263637.1| conserved hypothetical protein [Propionibacterium acnes J139]
gi|282583753|gb|EFB89133.1| conserved hypothetical protein [Propionibacterium acnes J139]
Length=371
Score = 41.6 bits (96), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 18/44 (41%), Positives = 26/44 (60%), Gaps = 0/44 (0%)
Query 123 PQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESAARAFFT 166
P+ +++KG + Y+ P YD T+A VWF EE+A A FT
Sbjct 324 PENYVIKGNDRSMKYHVPGSGGYDRTIADVWFATEEAARAAGFT 367
>gi|50842205|ref|YP_055432.1| putative regulatory protein [Propionibacterium acnes KPA171202]
gi|335055182|ref|ZP_08547970.1| hypothetical protein HMPREF9948_1349 [Propionibacterium sp. 434-HC2]
gi|50839807|gb|AAT82474.1| conserved protein, putative regulatory protein [Propionibacterium
acnes KPA171202]
gi|315107034|gb|EFT79010.1| conserved hypothetical protein [Propionibacterium acnes HL030PA1]
gi|333762510|gb|EGL40005.1| hypothetical protein HMPREF9948_1349 [Propionibacterium sp. 434-HC2]
gi|335277144|gb|AEH29049.1| putative regulatory protein [Propionibacterium acnes 6609]
Length=371
Score = 41.6 bits (96), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 18/44 (41%), Positives = 26/44 (60%), Gaps = 0/44 (0%)
Query 123 PQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESAARAFFT 166
P+ +++KG + Y+ P YD T+A VWF EE+A A FT
Sbjct 324 PESYVIKGNDRSMKYHVPGSGGYDRTIADVWFATEEAAQAAGFT 367
>gi|315103204|gb|EFT75180.1| conserved hypothetical protein [Propionibacterium acnes HL050PA2]
Length=371
Score = 41.2 bits (95), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 18/44 (41%), Positives = 26/44 (60%), Gaps = 0/44 (0%)
Query 123 PQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESAARAFFT 166
P+ +++KG + Y+ P YD T+A VWF EE+A A FT
Sbjct 324 PESYVIKGNDRSMKYHVPGSGGYDRTIADVWFATEEAARAAGFT 367
>gi|314966433|gb|EFT10532.1| conserved hypothetical protein [Propionibacterium acnes HL082PA2]
Length=371
Score = 41.2 bits (95), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 18/44 (41%), Positives = 26/44 (60%), Gaps = 0/44 (0%)
Query 123 PQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESAARAFFT 166
P+ +++KG + Y+ P YD T+A VWF EE+A A FT
Sbjct 324 PESYVIKGNDRSMKYHVPGSGGYDRTIADVWFATEEAARAAGFT 367
>gi|314923291|gb|EFS87122.1| conserved hypothetical protein [Propionibacterium acnes HL001PA1]
gi|315093020|gb|EFT64996.1| conserved hypothetical protein [Propionibacterium acnes HL060PA1]
gi|327327877|gb|EGE69653.1| hypothetical protein HMPREF9341_01988 [Propionibacterium acnes
HL103PA1]
Length=371
Score = 41.2 bits (95), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 18/44 (41%), Positives = 26/44 (60%), Gaps = 0/44 (0%)
Query 123 PQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESAARAFFT 166
P+ +++KG + Y+ P YD T+A VWF EE+A A FT
Sbjct 324 PESYVIKGNDRSMKYHVPGSGGYDRTIADVWFATEEAARAAGFT 367
>gi|315091673|gb|EFT63649.1| conserved hypothetical protein [Propionibacterium acnes HL110PA4]
Length=371
Score = 40.4 bits (93), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 18/44 (41%), Positives = 26/44 (60%), Gaps = 0/44 (0%)
Query 123 PQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESAARAFFT 166
P+ +++KG + Y+ P YD T+A VWF EE+A A FT
Sbjct 324 PETYVIKGNDRSMKYHVPGSGGYDRTIADVWFATEEAARAAGFT 367
>gi|119964246|ref|YP_947380.1| ribosomal protein L20 [Arthrobacter aurescens TC1]
gi|215274794|sp|A1R568.1|RL20_ARTAT RecName: Full=50S ribosomal protein L20
gi|119951105|gb|ABM10016.1| ribosomal protein L20 [Arthrobacter aurescens TC1]
Length=222
Score = 40.0 bits (92), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/51 (38%), Positives = 30/51 (59%), Gaps = 1/51 (1%)
Query 118 ADGS-GPQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESAARAFFTP 167
ADG P+G+ +KG ++++ Y+ P Y+ T A+ WF E+A A F P
Sbjct 161 ADGDEAPEGYAIKGNAESKKYHVPGSTWYNTTAAEYWFSTVEAAKAAGFEP 211
>gi|300742029|ref|ZP_07072050.1| ribosomal protein L17 [Rothia dentocariosa M567]
gi|311111943|ref|YP_003983165.1| 50S ribosomal protein L17 [Rothia dentocariosa ATCC 17931]
gi|300381214|gb|EFJ77776.1| ribosomal protein L17 [Rothia dentocariosa M567]
gi|310943437|gb|ADP39731.1| 50S ribosomal protein L17 [Rothia dentocariosa ATCC 17931]
Length=239
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 0/40 (0%)
Query 120 GSGPQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEES 159
G P+G+ VKG +D+ Y+ P Y T+A++WF ES
Sbjct 180 GEAPEGFEVKGNADSMKYHVPGSRWYANTIAEIWFDSAES 219
>gi|308176902|ref|YP_003916308.1| 50S ribosomal protein L20 [Arthrobacter arilaitensis Re117]
gi|307744365|emb|CBT75337.1| 50S ribosomal protein L20 [Arthrobacter arilaitensis Re117]
Length=215
Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/58 (33%), Positives = 31/58 (54%), Gaps = 0/58 (0%)
Query 110 GPGSARAGADGSGPQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESAARAFFTP 167
G G +A + P+G+++KG + + Y+ P YD T A+ WF ++A A F P
Sbjct 148 GEGVVKAVEGEAAPEGFVIKGNAGSNKYHVPGSTWYDQTEAEFWFNSIDAAKAAGFEP 205
>gi|297567683|ref|YP_003686654.1| hypothetical protein Mesil_3332 [Meiothermus silvanus DSM 9946]
gi|296852132|gb|ADH65146.1| hypothetical protein Mesil_3332 [Meiothermus silvanus DSM 9946]
Length=289
Score = 39.3 bits (90), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/55 (46%), Positives = 30/55 (55%), Gaps = 1/55 (1%)
Query 111 PGSARAGADGSGPQGWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESAARAFF 165
P SAR DGS P +KG S TR+Y+ P DP Y T A F EE+A A +
Sbjct 232 PQSARPNPDGSCPAEAPIKG-SKTRVYHLPSDPYYAATHAVACFPSEEAARSAGY 285
>gi|313824893|gb|EFS62607.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL063PA1]
Length=301
Score = 39.3 bits (90), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/107 (30%), Positives = 49/107 (46%), Gaps = 6/107 (5%)
Query 66 TAKTKVATESAAEQIPVAGEPAAEPIPVAGEPAA-RIPVVPYAPYGPGSARAGADGSGPQ 124
A+T V +E+ + G +A ++ EP V PYG S R + P
Sbjct 192 NARTIVFSEAGLDAF--VGARSANTQALSAEPEVPETNVADQHPYGEDSFRGD---NPPA 246
Query 125 GWLVKGRSDTRLYYTPEDPTYDPTVAQVWFQDEESAARAFFTPWRKS 171
G+ +KG D+ ++ P P Y T+A+VWF+ +A A F KS
Sbjct 247 GFDIKGNEDSMKFHEPSSPWYGRTIAEVWFRSAAAAEAAGFVNAVKS 293
Lambda K H
0.313 0.128 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 145800812160
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40