BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0902c Length=446 Score E Sequences producing significant alignments: (Bits) Value gi|15840321|ref|NP_335358.1| sensor histidine kinase [Mycobacter... 890 0.0 gi|15608042|ref|NP_215417.1| two component sensor histidine kina... 890 0.0 gi|183984601|ref|YP_001852892.1| two-component sensor histidine ... 857 0.0 gi|118616127|ref|YP_904459.1| two component sensor histidine kin... 856 0.0 gi|240172201|ref|ZP_04750860.1| two-component sensor histidine k... 851 0.0 gi|15828140|ref|NP_302403.1| sensor histidine kinase [Mycobacter... 813 0.0 gi|296169658|ref|ZP_06851276.1| sensor histidine kinase [Mycobac... 790 0.0 gi|342860508|ref|ZP_08717159.1| sensor histidine kinase [Mycobac... 734 0.0 gi|118464817|ref|YP_880279.1| sensor histidine kinase [Mycobacte... 730 0.0 gi|254773907|ref|ZP_05215423.1| sensor-type histidine kinase Prr... 729 0.0 gi|254822955|ref|ZP_05227956.1| sensor-type histidine kinase Prr... 727 0.0 gi|336461287|gb|EGO40161.1| signal transduction histidine kinase... 726 0.0 gi|333989462|ref|YP_004522076.1| two-component sensor histidine ... 723 0.0 gi|118472850|ref|YP_889896.1| sensor-type histidine kinase PrrB ... 689 0.0 gi|108801412|ref|YP_641609.1| periplasmic sensor signal transduc... 683 0.0 gi|145222333|ref|YP_001133011.1| integral membrane sensor signal... 660 0.0 gi|120405959|ref|YP_955788.1| integral membrane sensor signal tr... 651 0.0 gi|41406931|ref|NP_959767.1| hypothetical protein MAP0833c [Myco... 649 0.0 gi|339293911|gb|AEJ46022.1| sensor histidine kinase [Mycobacteri... 627 1e-177 gi|289749424|ref|ZP_06508802.1| sensor histidine kinase [Mycobac... 504 9e-141 gi|169628052|ref|YP_001701701.1| sensor histidine kinase PrrB [M... 488 6e-136 gi|296167010|ref|ZP_06849423.1| sensor histidine kinase [Mycobac... 482 6e-134 gi|118462291|ref|YP_879442.1| sensor histidine kinase [Mycobacte... 478 8e-133 gi|41406251|ref|NP_959087.1| hypothetical protein MAP0153 [Mycob... 476 4e-132 gi|240172707|ref|ZP_04751366.1| integral membrane sensor signal ... 474 1e-131 gi|336457759|gb|EGO36755.1| signal transduction histidine kinase... 474 2e-131 gi|120403110|ref|YP_952939.1| integral membrane sensor signal tr... 469 4e-130 gi|342860130|ref|ZP_08716782.1| hypothetical protein MCOL_14665 ... 468 9e-130 gi|254822564|ref|ZP_05227565.1| hypothetical protein MintA_21724... 467 2e-129 gi|145224822|ref|YP_001135500.1| integral membrane sensor signal... 466 5e-129 gi|126435589|ref|YP_001071280.1| integral membrane sensor signal... 460 3e-127 gi|108799961|ref|YP_640158.1| periplasmic sensor signal transduc... 459 3e-127 gi|118469082|ref|YP_887124.1| sensor-type histidine kinase PrrB ... 448 8e-124 gi|254773191|ref|ZP_05214707.1| hypothetical protein MaviaA2_007... 421 2e-115 gi|312138448|ref|YP_004005784.1| two component system sensor kin... 338 1e-90 gi|333918530|ref|YP_004492111.1| sensor-type histidine kinase pr... 326 5e-87 gi|111021967|ref|YP_704939.1| sensor kinase, two-component syste... 315 7e-84 gi|226364470|ref|YP_002782252.1| two-component histidine kinase ... 315 1e-83 gi|54022630|ref|YP_116872.1| putative two-component system senso... 313 4e-83 gi|73535712|pdb|1YS3|A Chain A, Crystal Structure Of The Atp Bin... 298 2e-78 gi|296395435|ref|YP_003660319.1| integral membrane sensor signal... 297 2e-78 gi|317509521|ref|ZP_07967127.1| hsp90-like protein [Segniliparus... 287 3e-75 gi|289749423|ref|ZP_06508801.1| two component system sensor hist... 285 8e-75 gi|325676261|ref|ZP_08155940.1| sensor histidine kinase [Rhodoco... 285 2e-74 gi|229488612|ref|ZP_04382478.1| sensor-type histidine kinase Prr... 283 3e-74 gi|312138670|ref|YP_004006006.1| two component system sensor kin... 283 5e-74 gi|325674556|ref|ZP_08154243.1| sensor-type histidine kinase Prr... 279 7e-73 gi|226308072|ref|YP_002768032.1| two-component histidine kinase ... 276 5e-72 gi|126432769|ref|YP_001068460.1| integral membrane sensor signal... 268 1e-69 gi|108797146|ref|YP_637343.1| periplasmic sensor signal transduc... 267 2e-69 >gi|15840321|ref|NP_335358.1| sensor histidine kinase [Mycobacterium tuberculosis CDC1551] gi|13880484|gb|AAK45172.1| sensor histidine kinase [Mycobacterium tuberculosis CDC1551] Length=469 Score = 890 bits (2301), Expect = 0.0, Method: Compositional matrix adjust. Identities = 446/446 (100%), Positives = 446/446 (100%), Gaps = 0/446 (0%) Query 1 MNILSRIFARTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAAGFA 60 MNILSRIFARTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAAGFA Sbjct 24 MNILSRIFARTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAAGFA 83 Query 61 IPFVPRGLDEIPRSPNDQDALITVRRGNVIKSNSDITLPKLQDDYADTYVRGVRYRVRTV 120 IPFVPRGLDEIPRSPNDQDALITVRRGNVIKSNSDITLPKLQDDYADTYVRGVRYRVRTV Sbjct 84 IPFVPRGLDEIPRSPNDQDALITVRRGNVIKSNSDITLPKLQDDYADTYVRGVRYRVRTV 143 Query 121 EIPGPEPTSVAVGATYDATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQLA 180 EIPGPEPTSVAVGATYDATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQLA Sbjct 144 EIPGPEPTSVAVGATYDATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQLA 203 Query 181 EQTRSIDAGDEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSH 240 EQTRSIDAGDEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSH Sbjct 204 EQTRSIDAGDEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSH 263 Query 241 ELRTPLTAMRTNLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLSALERLAQGELSTSDD 300 ELRTPLTAMRTNLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLSALERLAQGELSTSDD Sbjct 264 ELRTPLTAMRTNLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLSALERLAQGELSTSDD 323 Query 301 HVPVDITDLLDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGA 360 HVPVDITDLLDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGA Sbjct 324 HVPVDITDLLDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGA 383 Query 361 TLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQ 420 TLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQ Sbjct 384 TLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQ 443 Query 421 LHGGTASLENSPLGGARLVLRLPGPS 446 LHGGTASLENSPLGGARLVLRLPGPS Sbjct 444 LHGGTASLENSPLGGARLVLRLPGPS 469 >gi|15608042|ref|NP_215417.1| two component sensor histidine kinase PRRB [Mycobacterium tuberculosis H37Rv] gi|31792090|ref|NP_854583.1| two component sensor histidine kinase PRRB [Mycobacterium bovis AF2122/97] gi|121636825|ref|YP_977048.1| two component sensor histidine kinase prrB [Mycobacterium bovis BCG str. Pasteur 1173P2] 74 more sequence titles Length=446 Score = 890 bits (2299), Expect = 0.0, Method: Compositional matrix adjust. Identities = 446/446 (100%), Positives = 446/446 (100%), Gaps = 0/446 (0%) Query 1 MNILSRIFARTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAAGFA 60 MNILSRIFARTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAAGFA Sbjct 1 MNILSRIFARTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAAGFA 60 Query 61 IPFVPRGLDEIPRSPNDQDALITVRRGNVIKSNSDITLPKLQDDYADTYVRGVRYRVRTV 120 IPFVPRGLDEIPRSPNDQDALITVRRGNVIKSNSDITLPKLQDDYADTYVRGVRYRVRTV Sbjct 61 IPFVPRGLDEIPRSPNDQDALITVRRGNVIKSNSDITLPKLQDDYADTYVRGVRYRVRTV 120 Query 121 EIPGPEPTSVAVGATYDATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQLA 180 EIPGPEPTSVAVGATYDATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQLA Sbjct 121 EIPGPEPTSVAVGATYDATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQLA 180 Query 181 EQTRSIDAGDEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSH 240 EQTRSIDAGDEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSH Sbjct 181 EQTRSIDAGDEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSH 240 Query 241 ELRTPLTAMRTNLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLSALERLAQGELSTSDD 300 ELRTPLTAMRTNLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLSALERLAQGELSTSDD Sbjct 241 ELRTPLTAMRTNLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLSALERLAQGELSTSDD 300 Query 301 HVPVDITDLLDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGA 360 HVPVDITDLLDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGA Sbjct 301 HVPVDITDLLDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGA 360 Query 361 TLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQ 420 TLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQ Sbjct 361 TLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQ 420 Query 421 LHGGTASLENSPLGGARLVLRLPGPS 446 LHGGTASLENSPLGGARLVLRLPGPS Sbjct 421 LHGGTASLENSPLGGARLVLRLPGPS 446 >gi|183984601|ref|YP_001852892.1| two-component sensor histidine kinase PrrB [Mycobacterium marinum M] gi|183177927|gb|ACC43037.1| two-component sensor histidine kinase PrrB [Mycobacterium marinum M] Length=449 Score = 857 bits (2215), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/446 (96%), Positives = 437/446 (98%), Gaps = 0/446 (0%) Query 1 MNILSRIFARTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAAGFA 60 MNILSRIFARTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAAGFA Sbjct 4 MNILSRIFARTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAAGFA 63 Query 61 IPFVPRGLDEIPRSPNDQDALITVRRGNVIKSNSDITLPKLQDDYADTYVRGVRYRVRTV 120 IPFVPRGLDEIPRSPNDQDALITVRRG+++KSNSDITLPKLQ DYADTY+RGVRYRVRTV Sbjct 64 IPFVPRGLDEIPRSPNDQDALITVRRGDLVKSNSDITLPKLQKDYADTYIRGVRYRVRTV 123 Query 121 EIPGPEPTSVAVGATYDATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQLA 180 EIPGPEPTSVAVGATYDAT+AETNNLHRRVLLICTFAIGAA VFAWLLA FAVRPFKQLA Sbjct 124 EIPGPEPTSVAVGATYDATIAETNNLHRRVLLICTFAIGAATVFAWLLAVFAVRPFKQLA 183 Query 181 EQTRSIDAGDEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSH 240 EQTRSIDAGDEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQ RTKEALASARDFAAVSSH Sbjct 184 EQTRSIDAGDEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQIRTKEALASARDFAAVSSH 243 Query 241 ELRTPLTAMRTNLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLSALERLAQGELSTSDD 300 ELRTPLTAMRTNLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATL ALERLAQGELSTS+D Sbjct 244 ELRTPLTAMRTNLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLGALERLAQGELSTSED 303 Query 301 HVPVDITDLLDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGA 360 HVPVDIT+LLDRAAHDA RIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGG+ Sbjct 304 HVPVDITELLDRAAHDAMRIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGS 363 Query 361 TLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQ 420 T VQLSAVSSRAGVEIA+DDNGSGVPE ERQ+VFERFSRGSTASHSGSGLGLALVAQQA Sbjct 364 TRVQLSAVSSRAGVEIAVDDNGSGVPEAERQMVFERFSRGSTASHSGSGLGLALVAQQAH 423 Query 421 LHGGTASLENSPLGGARLVLRLPGPS 446 LHGGTASL+NSPLGGARL+L+LPGPS Sbjct 424 LHGGTASLQNSPLGGARLLLKLPGPS 449 >gi|118616127|ref|YP_904459.1| two component sensor histidine kinase PrrB [Mycobacterium ulcerans Agy99] gi|118568237|gb|ABL02988.1| two component sensor histidine kinase PrrB [Mycobacterium ulcerans Agy99] Length=446 Score = 856 bits (2211), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/446 (95%), Positives = 437/446 (98%), Gaps = 0/446 (0%) Query 1 MNILSRIFARTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAAGFA 60 MNILSRIFARTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAAGFA Sbjct 1 MNILSRIFARTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAAGFA 60 Query 61 IPFVPRGLDEIPRSPNDQDALITVRRGNVIKSNSDITLPKLQDDYADTYVRGVRYRVRTV 120 IPFVPRGLDEIPRSPNDQDALITVRRG+++KSNSDITLPKLQ+DYADTY+RGVRYRVRTV Sbjct 61 IPFVPRGLDEIPRSPNDQDALITVRRGDLVKSNSDITLPKLQEDYADTYIRGVRYRVRTV 120 Query 121 EIPGPEPTSVAVGATYDATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQLA 180 EIPGPEPTSVAVGATYDAT+AETNNLHRRVLLICTFAIGAA VFAWLLA FAVRPFKQLA Sbjct 121 EIPGPEPTSVAVGATYDATIAETNNLHRRVLLICTFAIGAATVFAWLLAVFAVRPFKQLA 180 Query 181 EQTRSIDAGDEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSH 240 EQTRSIDAGDEAPRVEVHGASEAIEIAE MRGMLQRIWNEQ RTKEALASARDFAAVSSH Sbjct 181 EQTRSIDAGDEAPRVEVHGASEAIEIAEGMRGMLQRIWNEQIRTKEALASARDFAAVSSH 240 Query 241 ELRTPLTAMRTNLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLSALERLAQGELSTSDD 300 ELRTPLTAMRTNLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATL ALERLAQGELSTS+D Sbjct 241 ELRTPLTAMRTNLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLGALERLAQGELSTSED 300 Query 301 HVPVDITDLLDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGA 360 HVPVDIT+LLDRAAHDA RIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGG+ Sbjct 301 HVPVDITELLDRAAHDAMRIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGS 360 Query 361 TLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQ 420 T VQLSAVSSRAGVEIA+DDNGSGVPE ERQ+VFERFSRGSTASHSGSGLGLALVAQQA Sbjct 361 TRVQLSAVSSRAGVEIAVDDNGSGVPEAERQMVFERFSRGSTASHSGSGLGLALVAQQAH 420 Query 421 LHGGTASLENSPLGGARLVLRLPGPS 446 LHGGTASL+NSPLGGARL+L+LPGPS Sbjct 421 LHGGTASLQNSPLGGARLLLKLPGPS 446 >gi|240172201|ref|ZP_04750860.1| two-component sensor histidine kinase PrrB [Mycobacterium kansasii ATCC 12478] Length=446 Score = 851 bits (2199), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/446 (96%), Positives = 438/446 (99%), Gaps = 0/446 (0%) Query 1 MNILSRIFARTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAAGFA 60 MNILSRIFARTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAAGFA Sbjct 1 MNILSRIFARTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAAGFA 60 Query 61 IPFVPRGLDEIPRSPNDQDALITVRRGNVIKSNSDITLPKLQDDYADTYVRGVRYRVRTV 120 IPFVPRGLDEIPRSPND+DALITVRRG+++KSNSDITLPKL +DYADTY+ GVRYRVRTV Sbjct 61 IPFVPRGLDEIPRSPNDRDALITVRRGDLVKSNSDITLPKLHNDYADTYIGGVRYRVRTV 120 Query 121 EIPGPEPTSVAVGATYDATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQLA 180 EIPGPEPTSVAVGATYDATVAETNNLHRRVLLIC FAIGAAAVFAWLLA FAVRPFKQLA Sbjct 121 EIPGPEPTSVAVGATYDATVAETNNLHRRVLLICAFAIGAAAVFAWLLAVFAVRPFKQLA 180 Query 181 EQTRSIDAGDEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSH 240 EQTRSIDAGDEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQ RTKEALASARDFAAVSSH Sbjct 181 EQTRSIDAGDEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQIRTKEALASARDFAAVSSH 240 Query 241 ELRTPLTAMRTNLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLSALERLAQGELSTSDD 300 ELRTPLTAMRTNLEVLSTLDLP+DQRKEVLNDVIRTQSRIEATLSALERLAQGELSTSDD Sbjct 241 ELRTPLTAMRTNLEVLSTLDLPEDQRKEVLNDVIRTQSRIEATLSALERLAQGELSTSDD 300 Query 301 HVPVDITDLLDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGA 360 HVPVDIT+LLDRAAHDA RIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGA Sbjct 301 HVPVDITELLDRAAHDAIRIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGA 360 Query 361 TLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQ 420 T VQLSAVSSRAGVEIAIDDNGSGVPE ERQVVF+RFSRGSTASHSGSGLGLALVAQQAQ Sbjct 361 TRVQLSAVSSRAGVEIAIDDNGSGVPEEERQVVFDRFSRGSTASHSGSGLGLALVAQQAQ 420 Query 421 LHGGTASLENSPLGGARLVLRLPGPS 446 LHGGTASL++SPLGGARL+L+LPGPS Sbjct 421 LHGGTASLQDSPLGGARLLLKLPGPS 446 >gi|15828140|ref|NP_302403.1| sensor histidine kinase [Mycobacterium leprae TN] gi|221230617|ref|YP_002504033.1| sensor histidine kinase [Mycobacterium leprae Br4923] gi|15214361|sp|O33071.1|PRRB_MYCLE RecName: Full=Sensor-type histidine kinase prrB gi|2440113|emb|CAB16700.1| two-component sensor [Mycobacterium leprae] gi|13093694|emb|CAC31079.1| sensor histidine kinase [Mycobacterium leprae] gi|219933724|emb|CAR72221.1| sensor histidine kinase [Mycobacterium leprae Br4923] Length=446 Score = 813 bits (2099), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/446 (93%), Positives = 430/446 (97%), Gaps = 0/446 (0%) Query 1 MNILSRIFARTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAAGFA 60 MNILSRIFARTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDR+LDEAAGFA Sbjct 1 MNILSRIFARTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRKLDEAAGFA 60 Query 61 IPFVPRGLDEIPRSPNDQDALITVRRGNVIKSNSDITLPKLQDDYADTYVRGVRYRVRTV 120 IPFVPRGLDEIPRSPNDQDA+ITVRRGN++KSN DITLPKL +DYADTY+RGVRYRVRTV Sbjct 61 IPFVPRGLDEIPRSPNDQDAIITVRRGNLVKSNFDITLPKLTNDYADTYLRGVRYRVRTV 120 Query 121 EIPGPEPTSVAVGATYDATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQLA 180 EIP PEPTS+AVGATYDATVAETNNLHRRVLLIC FAI AAAVFAWLLAAFAVRPFKQLA Sbjct 121 EIPAPEPTSIAVGATYDATVAETNNLHRRVLLICGFAIAAAAVFAWLLAAFAVRPFKQLA 180 Query 181 EQTRSIDAGDEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSH 240 +QTRS+DAG EAPRVEVHGA+EA+EIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSH Sbjct 181 QQTRSVDAGGEAPRVEVHGATEAVEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSH 240 Query 241 ELRTPLTAMRTNLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLSALERLAQGELSTSDD 300 ELRTPLTAMRTNLEVL+TLDL DDQRKEVL DVIRTQSRIEATLSALERLAQGELSTSDD Sbjct 241 ELRTPLTAMRTNLEVLATLDLADDQRKEVLGDVIRTQSRIEATLSALERLAQGELSTSDD 300 Query 301 HVPVDITDLLDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGA 360 HVPVDIT+LLDRAAHDA R YP+L VSLVPSPTCIIVGLPAGLRLAVDNA+ANAVKHGGA Sbjct 301 HVPVDITELLDRAAHDATRSYPELKVSLVPSPTCIIVGLPAGLRLAVDNAVANAVKHGGA 360 Query 361 TLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQ 420 T VQLSAVSSRAGVEIA+DDNGSGVPE ERQVVFERFSRGSTASHSGSGLGLALVAQQAQ Sbjct 361 TRVQLSAVSSRAGVEIAVDDNGSGVPEDERQVVFERFSRGSTASHSGSGLGLALVAQQAQ 420 Query 421 LHGGTASLENSPLGGARLVLRLPGPS 446 LHGGTASLE SPLGGARL+LR+ PS Sbjct 421 LHGGTASLETSPLGGARLLLRISAPS 446 >gi|296169658|ref|ZP_06851276.1| sensor histidine kinase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895655|gb|EFG75351.1| sensor histidine kinase [Mycobacterium parascrofulaceum ATCC BAA-614] Length=446 Score = 790 bits (2041), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/446 (92%), Positives = 425/446 (96%), Gaps = 0/446 (0%) Query 1 MNILSRIFARTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAAGFA 60 MN LSRI RTPSLR RVVVAT IGAAIPVLIVG VVWVGITNDRKERLDRRLDEAAGFA Sbjct 1 MNFLSRILTRTPSLRARVVVATVIGAAIPVLIVGVVVWVGITNDRKERLDRRLDEAAGFA 60 Query 61 IPFVPRGLDEIPRSPNDQDALITVRRGNVIKSNSDITLPKLQDDYADTYVRGVRYRVRTV 120 IPF+PRGLDEIPRSPND DA++TVRRG+++KSNSD+TLPKL DYAD YV+GVRYRVRTV Sbjct 61 IPFLPRGLDEIPRSPNDNDAIMTVRRGDLVKSNSDVTLPKLDVDYADAYVKGVRYRVRTV 120 Query 121 EIPGPEPTSVAVGATYDATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQLA 180 EIP PEPTS+AVGATYDAT+AETNNLHRRVLLIC FAIGAAAVFAWLLAAFAVRPFKQLA Sbjct 121 EIPTPEPTSLAVGATYDATLAETNNLHRRVLLICGFAIGAAAVFAWLLAAFAVRPFKQLA 180 Query 181 EQTRSIDAGDEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSH 240 +QTRSIDAGDEAPRVEVHGA+EA+EIAEAMRGMLQRIW+EQ RTKEALASARDFAAVSSH Sbjct 181 QQTRSIDAGDEAPRVEVHGATEAVEIAEAMRGMLQRIWDEQIRTKEALASARDFAAVSSH 240 Query 241 ELRTPLTAMRTNLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLSALERLAQGELSTSDD 300 ELRTPLTAMRTNLEVLSTLD+ DDQRKEVL+DVIRTQSRIEATLSALERLAQGELSTSDD Sbjct 241 ELRTPLTAMRTNLEVLSTLDMSDDQRKEVLSDVIRTQSRIEATLSALERLAQGELSTSDD 300 Query 301 HVPVDITDLLDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGA 360 HVPVDIT+LLDRAAHDA RIYPDLDVSL PSPTCIIVGLPAGLRLAVDNAIANAVKHGGA Sbjct 301 HVPVDITELLDRAAHDAMRIYPDLDVSLAPSPTCIIVGLPAGLRLAVDNAIANAVKHGGA 360 Query 361 TLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQ 420 T VQLSAVSSRAGVEIAIDDNGSGVPE ER VVFERFSRGSTASHSGSGLGLALVAQQA Sbjct 361 TRVQLSAVSSRAGVEIAIDDNGSGVPEDERDVVFERFSRGSTASHSGSGLGLALVAQQAH 420 Query 421 LHGGTASLENSPLGGARLVLRLPGPS 446 LH GTA+LE+SPLGGARLVLRLPGPS Sbjct 421 LHRGTAALESSPLGGARLVLRLPGPS 446 >gi|342860508|ref|ZP_08717159.1| sensor histidine kinase [Mycobacterium colombiense CECT 3035] gi|342132163|gb|EGT85404.1| sensor histidine kinase [Mycobacterium colombiense CECT 3035] Length=445 Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/446 (84%), Positives = 407/446 (92%), Gaps = 1/446 (0%) Query 1 MNILSRIFARTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAAGFA 60 MN LSRI RTPSLR RV VATAIG AI V+I G VVW GIT+ KERLDRRLDEAAGFA Sbjct 1 MNFLSRILTRTPSLRARVAVATAIGTAIVVVIAGAVVWFGITSAWKERLDRRLDEAAGFA 60 Query 61 IPFVPRGLDEIPRSPNDQDALITVRRGNVIKSNSDITLPKLQDDYADTYVRGVRYRVRTV 120 IPF+PRGLD+IPR+PNDQD +ITVRR +KSNSD+TLP L YADTY+ GVRYRVRT+ Sbjct 61 IPFLPRGLDDIPRAPNDQDTVITVRRDGQVKSNSDVTLPPLDVGYADTYINGVRYRVRTL 120 Query 121 EIPGPEPTSVAVGATYDATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQLA 180 E+ P+P +VAVGATY T+A+TNNLHRRV+LIC +IGAAAVFAWLLAAFAVRPFK+LA Sbjct 121 EVATPQPATVAVGATYYDTIAQTNNLHRRVILICALSIGAAAVFAWLLAAFAVRPFKRLA 180 Query 181 EQTRSIDAGDEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSH 240 +Q RSIDA DE P+V V GASEA+EIAEAMRGMLQRIW EQ+RTK+ALASARDFAAVSSH Sbjct 181 QQARSIDA-DERPQVAVRGASEAVEIAEAMRGMLQRIWTEQDRTKDALASARDFAAVSSH 239 Query 241 ELRTPLTAMRTNLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLSALERLAQGELSTSDD 300 ELRTPLTAMRTNLEVLSTLD+PD+QRKEVL DV+RTQSRIEATL+ALERLAQGELST+DD Sbjct 240 ELRTPLTAMRTNLEVLSTLDMPDEQRKEVLGDVVRTQSRIEATLTALERLAQGELSTADD 299 Query 301 HVPVDITDLLDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGA 360 HVPVDIT+LLDRAAHDAARIYP +DVSLVPSPTCIIVGLPAGLRL VDNAIANAVKHGGA Sbjct 300 HVPVDITELLDRAAHDAARIYPGVDVSLVPSPTCIIVGLPAGLRLTVDNAIANAVKHGGA 359 Query 361 TLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQ 420 T VQLSAVSSRAGVEIAIDDNGSGVPE ER+VVF+RFSRGSTASHSGSGLGLALVAQQAQ Sbjct 360 TKVQLSAVSSRAGVEIAIDDNGSGVPEDERRVVFDRFSRGSTASHSGSGLGLALVAQQAQ 419 Query 421 LHGGTASLENSPLGGARLVLRLPGPS 446 LHGGTA+LENSPLGGARLVLRLPGPS Sbjct 420 LHGGTAALENSPLGGARLVLRLPGPS 445 >gi|118464817|ref|YP_880279.1| sensor histidine kinase [Mycobacterium avium 104] gi|118166104|gb|ABK67001.1| sensor-type histidine kinase PrrB [Mycobacterium avium 104] Length=445 Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/446 (83%), Positives = 406/446 (92%), Gaps = 1/446 (0%) Query 1 MNILSRIFARTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAAGFA 60 M +LSRI RTPSLR RV VATAIG AI V+I G VVW GIT+ +ERLDRRLDE AGFA Sbjct 1 MKLLSRIVTRTPSLRARVAVATAIGTAIVVVIAGAVVWFGITSAWRERLDRRLDETAGFA 60 Query 61 IPFVPRGLDEIPRSPNDQDALITVRRGNVIKSNSDITLPKLQDDYADTYVRGVRYRVRTV 120 IPF+PRGL+EIPRSP DQD +ITVRR +KSNSD+TLP +++ YADTY+ GVRYRVRTV Sbjct 61 IPFLPRGLNEIPRSPKDQDTVITVRRDGQVKSNSDVTLPPMEEGYADTYINGVRYRVRTV 120 Query 121 EIPGPEPTSVAVGATYDATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQLA 180 E+ P+P +V VGATYD T+A+TNNLHRRV+LIC +IGAAAVFAWLLAAFAVRPFK+LA Sbjct 121 EVRTPQPATVEVGATYDDTIAQTNNLHRRVILICALSIGAAAVFAWLLAAFAVRPFKRLA 180 Query 181 EQTRSIDAGDEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSH 240 +Q RSIDA DE P+V V GASEA+EIAEAMRGMLQRIW EQ+RTKEALASARDF+AV++H Sbjct 181 QQARSIDA-DERPQVAVRGASEAVEIAEAMRGMLQRIWKEQDRTKEALASARDFSAVTAH 239 Query 241 ELRTPLTAMRTNLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLSALERLAQGELSTSDD 300 ELR+PLTAMRTNLEVLSTLD+PD+QRKEVL DVIRTQSRIEATL+ALERLAQGELSTS+D Sbjct 240 ELRSPLTAMRTNLEVLSTLDMPDEQRKEVLGDVIRTQSRIEATLTALERLAQGELSTSED 299 Query 301 HVPVDITDLLDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGA 360 HVPVDIT+LLDRAAHDA RIYP LDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGA Sbjct 300 HVPVDITELLDRAAHDAMRIYPGLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGA 359 Query 361 TLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQ 420 T VQLSAVSSRAGVEIA+DDNGSGVPE ERQVVF+RFSRGSTAS SGSGLGLALVAQQAQ Sbjct 360 TRVQLSAVSSRAGVEIAVDDNGSGVPEDERQVVFDRFSRGSTASQSGSGLGLALVAQQAQ 419 Query 421 LHGGTASLENSPLGGARLVLRLPGPS 446 LHGGTA+LENSPLGGARLVLRLPGPS Sbjct 420 LHGGTAALENSPLGGARLVLRLPGPS 445 >gi|254773907|ref|ZP_05215423.1| sensor-type histidine kinase PrrB [Mycobacterium avium subsp. avium ATCC 25291] Length=445 Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/446 (83%), Positives = 406/446 (92%), Gaps = 1/446 (0%) Query 1 MNILSRIFARTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAAGFA 60 M +LSRI RTPSLR RV VATAIG AI V+I G VVW GIT+ +ERLDRRLDE AGFA Sbjct 1 MKLLSRIVTRTPSLRARVAVATAIGTAIVVVIAGAVVWFGITSAWRERLDRRLDETAGFA 60 Query 61 IPFVPRGLDEIPRSPNDQDALITVRRGNVIKSNSDITLPKLQDDYADTYVRGVRYRVRTV 120 IPF+PRGL+EIPRSP DQD +ITVRR +KSNSD+TLP +++ YADTY+ GVRYRVRTV Sbjct 61 IPFLPRGLNEIPRSPKDQDTVITVRRDGQVKSNSDVTLPPMEEGYADTYIDGVRYRVRTV 120 Query 121 EIPGPEPTSVAVGATYDATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQLA 180 E+ P+P +V VGATYD T+A+TNNLHRRV+LIC +IGAAAVFAWLLAAFAVRPFK+LA Sbjct 121 EVRTPQPATVEVGATYDDTIAQTNNLHRRVILICALSIGAAAVFAWLLAAFAVRPFKRLA 180 Query 181 EQTRSIDAGDEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSH 240 +Q RSIDA DE P+V V GASEA+EIAEAMRGMLQRIW EQ+RTKEALASARDF+AV++H Sbjct 181 QQARSIDA-DERPQVAVRGASEAVEIAEAMRGMLQRIWKEQDRTKEALASARDFSAVTAH 239 Query 241 ELRTPLTAMRTNLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLSALERLAQGELSTSDD 300 ELR+PLTAMRTNLEVLSTLD+PD+QRKEVL DVIRTQSRIEATL+ALERLAQGELSTS+D Sbjct 240 ELRSPLTAMRTNLEVLSTLDMPDEQRKEVLGDVIRTQSRIEATLTALERLAQGELSTSED 299 Query 301 HVPVDITDLLDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGA 360 HVPVDIT+LLDRAAHDA RIYP LDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGA Sbjct 300 HVPVDITELLDRAAHDAMRIYPGLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGA 359 Query 361 TLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQ 420 T VQLSAVSSRAGVEIA+DDNGSGVPE ERQVVF+RFSRGSTAS SGSGLGLALVAQQAQ Sbjct 360 TRVQLSAVSSRAGVEIAVDDNGSGVPEDERQVVFDRFSRGSTASQSGSGLGLALVAQQAQ 419 Query 421 LHGGTASLENSPLGGARLVLRLPGPS 446 LHGGTA+LENSPLGGARLVLRLPGPS Sbjct 420 LHGGTAALENSPLGGARLVLRLPGPS 445 >gi|254822955|ref|ZP_05227956.1| sensor-type histidine kinase PrrB [Mycobacterium intracellulare ATCC 13950] Length=445 Score = 727 bits (1876), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/446 (83%), Positives = 405/446 (91%), Gaps = 1/446 (0%) Query 1 MNILSRIFARTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAAGFA 60 MN LSRI RTPSLR RV VATAIG AI V+I G VVW GIT+ KERLDRRLDEAAGFA Sbjct 1 MNFLSRILTRTPSLRARVAVATAIGTAIVVVIAGAVVWFGITSAWKERLDRRLDEAAGFA 60 Query 61 IPFVPRGLDEIPRSPNDQDALITVRRGNVIKSNSDITLPKLQDDYADTYVRGVRYRVRTV 120 IPF+PRGLD+IPR+P+DQD +ITVRR +KSNSD+TLP L+ YADTY+ GVRYRVRT+ Sbjct 61 IPFLPRGLDDIPRAPHDQDTVITVRRDGQVKSNSDVTLPPLEVGYADTYINGVRYRVRTL 120 Query 121 EIPGPEPTSVAVGATYDATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQLA 180 E+ P+P +VAVGATY T+A+TNNLHRRV+LIC +IGAAAVFAWLLAAFAVRPFK+LA Sbjct 121 EVATPQPATVAVGATYYDTIAQTNNLHRRVILICALSIGAAAVFAWLLAAFAVRPFKRLA 180 Query 181 EQTRSIDAGDEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSH 240 +Q RSIDA DE P+V V GA+EA+EIAEAMRGMLQRIW EQ+RTK+ALASARDFAAVSSH Sbjct 181 QQARSIDA-DERPQVAVRGATEAVEIAEAMRGMLQRIWTEQDRTKDALASARDFAAVSSH 239 Query 241 ELRTPLTAMRTNLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLSALERLAQGELSTSDD 300 ELRTPLTAMRTNLEVLSTLD+PD+QRKEVL DVIRTQSRIEATL+ALERLAQGELSTSDD Sbjct 240 ELRTPLTAMRTNLEVLSTLDMPDEQRKEVLGDVIRTQSRIEATLTALERLAQGELSTSDD 299 Query 301 HVPVDITDLLDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGA 360 HVPVDIT+LLDRAAHDA R+YP +DVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGA Sbjct 300 HVPVDITELLDRAAHDATRVYPGVDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGA 359 Query 361 TLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQ 420 T V+LSAVSSRAGVEIAIDDNG GVPE ERQVVF RFSRGSTASHSGSGLGLALVAQQA+ Sbjct 360 TRVELSAVSSRAGVEIAIDDNGRGVPEDERQVVFARFSRGSTASHSGSGLGLALVAQQAE 419 Query 421 LHGGTASLENSPLGGARLVLRLPGPS 446 LHGGTA LE+SPLGGARLVLRLPGPS Sbjct 420 LHGGTAELESSPLGGARLVLRLPGPS 445 >gi|336461287|gb|EGO40161.1| signal transduction histidine kinase [Mycobacterium avium subsp. paratuberculosis S397] Length=443 Score = 726 bits (1874), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/444 (83%), Positives = 404/444 (91%), Gaps = 1/444 (0%) Query 1 MNILSRIFARTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAAGFA 60 M +LSRI RTPSLR RV VATAIG AI V+I G VVW GIT+ +ERLDRRLDE AGFA Sbjct 1 MKLLSRIVTRTPSLRARVAVATAIGTAIVVVIAGAVVWFGITSAWRERLDRRLDETAGFA 60 Query 61 IPFVPRGLDEIPRSPNDQDALITVRRGNVIKSNSDITLPKLQDDYADTYVRGVRYRVRTV 120 IPF+PRGL+EIPRSP DQD +ITVRR +KSNSD+TLP +++ YADTY+ GVRYRVRTV Sbjct 61 IPFLPRGLNEIPRSPKDQDTVITVRRDGQVKSNSDVTLPPMEEGYADTYINGVRYRVRTV 120 Query 121 EIPGPEPTSVAVGATYDATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQLA 180 E+ P+P +V VGATYD T+A+TNNLHRRV+LIC +IGAAAVFAWLLAAFAVRPFK+LA Sbjct 121 EVRTPQPATVEVGATYDDTIAQTNNLHRRVILICALSIGAAAVFAWLLAAFAVRPFKRLA 180 Query 181 EQTRSIDAGDEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSH 240 +Q RSIDA DE P+V V GASEA+EIAEAMRGMLQRIW EQ+RTKEALASARDF+AV++H Sbjct 181 QQARSIDA-DERPQVAVRGASEAVEIAEAMRGMLQRIWKEQDRTKEALASARDFSAVTAH 239 Query 241 ELRTPLTAMRTNLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLSALERLAQGELSTSDD 300 ELR+PLTAMRTNLEVLSTLD+PD+QRKEVL DVIRTQSRIEATL+ALERLAQGELSTS+D Sbjct 240 ELRSPLTAMRTNLEVLSTLDMPDEQRKEVLGDVIRTQSRIEATLTALERLAQGELSTSED 299 Query 301 HVPVDITDLLDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGA 360 HVPVDIT+LLDRAAHDA RIYP LDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGA Sbjct 300 HVPVDITELLDRAAHDAMRIYPGLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGA 359 Query 361 TLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQ 420 T VQLSAVSSRAGVEIA+DDNGSGVPE ERQVVF+RFSRGSTAS SGSGLGLALVAQQAQ Sbjct 360 TRVQLSAVSSRAGVEIAVDDNGSGVPEDERQVVFDRFSRGSTASQSGSGLGLALVAQQAQ 419 Query 421 LHGGTASLENSPLGGARLVLRLPG 444 LHGGTA+LENSPLGGARLVLRLPG Sbjct 420 LHGGTAALENSPLGGARLVLRLPG 443 >gi|333989462|ref|YP_004522076.1| two-component sensor histidine kinase [Mycobacterium sp. JDM601] gi|333485430|gb|AEF34822.1| two-component sensor histidine kinase PrrB [Mycobacterium sp. JDM601] Length=444 Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/445 (81%), Positives = 401/445 (91%), Gaps = 2/445 (0%) Query 1 MNILSRIFARTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAAGFA 60 MN+L R+FARTPSLRTRVV+ATAIG AI +I+G +VWVGITNDRK LDRRLDEAAG Sbjct 1 MNMLRRVFARTPSLRTRVVLATAIGTAIVTVIIGAIVWVGITNDRKYWLDRRLDEAAGLT 60 Query 61 IPFVPRGLDEIPRSPNDQDALITVRRGNVIKSNSDITLPKLQDDYADTYVRGVRYRVRTV 120 +P + GL E+PR+ DA+IT+RR + SNS + LP+L+ YADT + GVRYRVRTV Sbjct 61 VPLI--GLGELPRAAGGTDAVITLRRAGEVTSNSAVVLPELEAGYADTEIDGVRYRVRTV 118 Query 121 EIPGPEPTSVAVGATYDATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQLA 180 +IPGP P S+AVGATY+AT+A+TNNLHRRVLL+CTFAIGAAAV WLLAAFAVRP ++LA Sbjct 119 DIPGPGPRSLAVGATYEATIADTNNLHRRVLLLCTFAIGAAAVLGWLLAAFAVRPLRRLA 178 Query 181 EQTRSIDAGDEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSH 240 +Q RSIDAGDE P +EV GASEA+EIAEAMRGMLQRIW EQ+RTKEALASARDFAAVSSH Sbjct 179 QQARSIDAGDERPEIEVRGASEAVEIAEAMRGMLQRIWTEQDRTKEALASARDFAAVSSH 238 Query 241 ELRTPLTAMRTNLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLSALERLAQGELSTSDD 300 ELRTPLTAMRTNLEVL+TLDLP+DQRKEVL+DV+RTQSRIEATLSALERLAQGELST+DD Sbjct 239 ELRTPLTAMRTNLEVLTTLDLPEDQRKEVLSDVVRTQSRIEATLSALERLAQGELSTADD 298 Query 301 HVPVDITDLLDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGA 360 VPVDIT+LLDRAAHDA R++PDL+VSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGA Sbjct 299 QVPVDITELLDRAAHDAMRVFPDLNVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGA 358 Query 361 TLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQ 420 T VQLSAV+SRAGVEIAIDDNGSGVPE ERQVVFERFSRGSTASHSGSGLGLALVAQQA Sbjct 359 TQVQLSAVTSRAGVEIAIDDNGSGVPEDERQVVFERFSRGSTASHSGSGLGLALVAQQAG 418 Query 421 LHGGTASLENSPLGGARLVLRLPGP 445 LHGGTA+LE+SP+GG RL+LRLP P Sbjct 419 LHGGTATLEDSPMGGVRLMLRLPPP 443 >gi|118472850|ref|YP_889896.1| sensor-type histidine kinase PrrB [Mycobacterium smegmatis str. MC2 155] gi|118174137|gb|ABK75033.1| sensor-type histidine kinase PrrB [Mycobacterium smegmatis str. MC2 155] Length=446 Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/445 (82%), Positives = 403/445 (91%), Gaps = 0/445 (0%) Query 1 MNILSRIFARTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAAGFA 60 M++L+RIF RTPSLRTRV ATAIGAAI V+IVGT+VW+GITNDRKERLDRRLDEAAGFA Sbjct 1 MSMLTRIFRRTPSLRTRVAFATAIGAAIVVVIVGTIVWIGITNDRKERLDRRLDEAAGFA 60 Query 61 IPFVPRGLDEIPRSPNDQDALITVRRGNVIKSNSDITLPKLQDDYADTYVRGVRYRVRTV 120 IPF+PRGLD+IPRSPNDQDA+ITVR+ + SNS + LP+L YADTY+ GVR+RVRTV Sbjct 61 IPFLPRGLDQIPRSPNDQDAVITVRQTGAVTSNSTVVLPELPAGYADTYIDGVRWRVRTV 120 Query 121 EIPGPEPTSVAVGATYDATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQLA 180 EIP P P VAVGATYDAT+A+TNNLHRRVL+IC FA+GAA V W+LAAFAVRP K+LA Sbjct 121 EIPAPGPMWVAVGATYDATIADTNNLHRRVLVICVFAVGAATVLGWVLAAFAVRPLKRLA 180 Query 181 EQTRSIDAGDEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSH 240 EQTR I+AGDEAP VEV GA+EA+EIAEA+ GML+RIW EQ+RTK ALASARDFA+VS+H Sbjct 181 EQTREIEAGDEAPDVEVRGATEAVEIAEAVNGMLKRIWKEQDRTKSALASARDFASVSAH 240 Query 241 ELRTPLTAMRTNLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLSALERLAQGELSTSDD 300 ELRTPLTAMRTNLEVLSTLDLPD+QRKEV+NDVIRTQSRIEATL ALERLAQGELST+DD Sbjct 241 ELRTPLTAMRTNLEVLSTLDLPDEQRKEVVNDVIRTQSRIEATLGALERLAQGELSTTDD 300 Query 301 HVPVDITDLLDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGA 360 HV VDIT+LLDRAAHDA RIYPDL+VSL PSPT IIVGLP GLRL+VDNAIANAVKHGGA Sbjct 301 HVTVDITELLDRAAHDAMRIYPDLEVSLAPSPTVIIVGLPTGLRLSVDNAIANAVKHGGA 360 Query 361 TLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQ 420 T VQLSAVSSR GVEIAIDDNG GVPEGER +VF+RF+RGSTAS SGSGLGLALVAQQA+ Sbjct 361 TRVQLSAVSSREGVEIAIDDNGVGVPEGERALVFDRFARGSTASRSGSGLGLALVAQQAE 420 Query 421 LHGGTASLENSPLGGARLVLRLPGP 445 LHGGTA+L SPLGGARL+LRLPGP Sbjct 421 LHGGTATLAESPLGGARLLLRLPGP 445 >gi|108801412|ref|YP_641609.1| periplasmic sensor signal transduction histidine kinase [Mycobacterium sp. MCS] gi|119870565|ref|YP_940517.1| integral membrane sensor signal transduction histidine kinase [Mycobacterium sp. KMS] gi|126437396|ref|YP_001073087.1| integral membrane sensor signal transduction histidine kinase [Mycobacterium sp. JLS] gi|108771831|gb|ABG10553.1| periplasmic sensor signal transduction histidine kinase [Mycobacterium sp. MCS] gi|119696654|gb|ABL93727.1| integral membrane sensor signal transduction histidine kinase [Mycobacterium sp. KMS] gi|126237196|gb|ABO00597.1| integral membrane sensor signal transduction histidine kinase [Mycobacterium sp. JLS] Length=448 Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/446 (83%), Positives = 405/446 (91%), Gaps = 1/446 (0%) Query 1 MNILSRIFARTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAAGFA 60 M+ LSRIF RTPSLRTRV ATAIGAAI V+IVGTVVWVGITNDRKERLDRRLDEAAGFA Sbjct 1 MSALSRIFRRTPSLRTRVAFATAIGAAIVVVIVGTVVWVGITNDRKERLDRRLDEAAGFA 60 Query 61 IPFVPRGLDEIPRSPNDQDALITVRR-GNVIKSNSDITLPKLQDDYADTYVRGVRYRVRT 119 IPF+PRGLD IP+SPN+QD +ITVR + SNSD+ LP+ Q YADTYV GVRYRVRT Sbjct 61 IPFLPRGLDTIPKSPNNQDVVITVRLPSGEVTSNSDVVLPESQPGYADTYVDGVRYRVRT 120 Query 120 VEIPGPEPTSVAVGATYDATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQL 179 V+I PEP SV VGATYDATVA+TNNLHRRV++IC A+GAA + WLLAAFAVRP K+L Sbjct 121 VDIRYPEPMSVEVGATYDATVADTNNLHRRVIIICALAVGAATLLGWLLAAFAVRPLKRL 180 Query 180 AEQTRSIDAGDEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSS 239 AEQTR IDAGDEAP VEV GASEA+EIAEA++GML+RIW+EQ+RTK ALASARDFA+VS+ Sbjct 181 AEQTRQIDAGDEAPDVEVRGASEAVEIAEAVKGMLERIWSEQDRTKAALASARDFASVSA 240 Query 240 HELRTPLTAMRTNLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLSALERLAQGELSTSD 299 HELRTPLTAMRTNLEVL+TLDL D+QRKEV+NDVIRTQSRIEATLSALERLAQGELST+ Sbjct 241 HELRTPLTAMRTNLEVLATLDLADEQRKEVINDVIRTQSRIEATLSALERLAQGELSTAA 300 Query 300 DHVPVDITDLLDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGG 359 DHVPVDIT+LLDRAAHDA R+YPDL+V+LVP+PT IIVGLPAGLRLAVDNAIANAVKHGG Sbjct 301 DHVPVDITELLDRAAHDAMRVYPDLEVTLVPAPTVIIVGLPAGLRLAVDNAIANAVKHGG 360 Query 360 ATLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQA 419 AT VQLSAVSSRAGVEIAIDD+G GVPE ER VFERFSRGSTASHSGSGLGLALVAQQA Sbjct 361 ATRVQLSAVSSRAGVEIAIDDDGVGVPEEERTRVFERFSRGSTASHSGSGLGLALVAQQA 420 Query 420 QLHGGTASLENSPLGGARLVLRLPGP 445 +LHGGTA+LE+SPLGGARL+LRLPGP Sbjct 421 ELHGGTATLESSPLGGARLLLRLPGP 446 >gi|145222333|ref|YP_001133011.1| integral membrane sensor signal transduction histidine kinase [Mycobacterium gilvum PYR-GCK] gi|315442766|ref|YP_004075645.1| signal transduction histidine kinase [Mycobacterium sp. Spyr1] gi|145214819|gb|ABP44223.1| integral membrane sensor signal transduction histidine kinase [Mycobacterium gilvum PYR-GCK] gi|315261069|gb|ADT97810.1| signal transduction histidine kinase [Mycobacterium sp. Spyr1] Length=447 Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/446 (77%), Positives = 384/446 (87%), Gaps = 1/446 (0%) Query 1 MNILSRIFARTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAAGFA 60 M+ LSR RTPSLR RV +AI AI VLI GTVVW GIT+ ERLDRRLDEAAGF Sbjct 1 MSALSRFVRRTPSLRQRVAFTSAIAGAIVVLIAGTVVWFGITDAWNERLDRRLDEAAGFV 60 Query 61 IPFVPRGLDEIPRSPNDQDALITVRR-GNVIKSNSDITLPKLQDDYADTYVRGVRYRVRT 119 IPF+PRGLDEIP SPNDQD +ITVRR G SNS + LP+++ YADTY+ GVRYRVRT Sbjct 61 IPFLPRGLDEIPPSPNDQDVVITVRRDGGDAASNSTVVLPEMEPGYADTYLDGVRYRVRT 120 Query 120 VEIPGPEPTSVAVGATYDATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQL 179 VE+ P+P SVAVGATYDAT+A+ NNLHRRVL+ICT AIGAA + W+LAAFAVRPFKQL Sbjct 121 VELATPQPMSVAVGATYDATIADINNLHRRVLIICTLAIGAATLGGWVLAAFAVRPFKQL 180 Query 180 AEQTRSIDAGDEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSS 239 A QT +ID GDE P ++V GA+EA+EIAEA+ G++QR+W EQ RTK AL SARDFA+VS+ Sbjct 181 ARQTSAIDTGDEEPDIDVRGATEAVEIAEAINGLVQRVWEEQERTKAALTSARDFASVSA 240 Query 240 HELRTPLTAMRTNLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLSALERLAQGELSTSD 299 HELRTPLTAMRTNLEVL+TL+L +D R EVL DV+RTQ+RIEATL ALERLAQGELST D Sbjct 241 HELRTPLTAMRTNLEVLATLELSEDGRNEVLGDVMRTQTRIEATLGALERLAQGELSTED 300 Query 300 DHVPVDITDLLDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGG 359 DHVPVDIT+LLDRAAHDA R+YPDLDVSLVP+PT IIVGLPAGLRLAVDNAIANAVKHGG Sbjct 301 DHVPVDITELLDRAAHDAMRVYPDLDVSLVPAPTVIIVGLPAGLRLAVDNAIANAVKHGG 360 Query 360 ATLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQA 419 AT VQLSAVSSR GVEIAIDD+G GVPE ER+VVF+RFSRGSTAS SGSGLGLALVAQQA Sbjct 361 ATRVQLSAVSSRDGVEIAIDDDGVGVPEAEREVVFDRFSRGSTASQSGSGLGLALVAQQA 420 Query 420 QLHGGTASLENSPLGGARLVLRLPGP 445 +LHGGTASL +SPLGGARL+LRLPGP Sbjct 421 ELHGGTASLGSSPLGGARLLLRLPGP 446 >gi|120405959|ref|YP_955788.1| integral membrane sensor signal transduction histidine kinase [Mycobacterium vanbaalenii PYR-1] gi|119958777|gb|ABM15782.1| integral membrane sensor signal transduction histidine kinase [Mycobacterium vanbaalenii PYR-1] Length=446 Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/445 (80%), Positives = 398/445 (90%), Gaps = 0/445 (0%) Query 1 MNILSRIFARTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAAGFA 60 M LSRIF RTPSLRTRV ATAI AAI V IVGTVVWVGITNDR+ERLDRRLDEAAGFA Sbjct 1 MIALSRIFRRTPSLRTRVAFATAIAAAIVVGIVGTVVWVGITNDRQERLDRRLDEAAGFA 60 Query 61 IPFVPRGLDEIPRSPNDQDALITVRRGNVIKSNSDITLPKLQDDYADTYVRGVRYRVRTV 120 IP +PR LDEIP+SPN QDALITVR G + SNS++ LP+L+ YADTYV GVRYRVRTV Sbjct 61 IPLLPRSLDEIPKSPNGQDALITVRTGGQVTSNSNVVLPELEPGYADTYVDGVRYRVRTV 120 Query 121 EIPGPEPTSVAVGATYDATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQLA 180 + PEP SVAVGATYDAT+A+TNNLHRRVL+ICT A+GAA WLLAAFAVRPFK+LA Sbjct 121 ALSTPEPMSVAVGATYDATIADTNNLHRRVLIICTLAVGAATFGGWLLAAFAVRPFKRLA 180 Query 181 EQTRSIDAGDEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSH 240 +QTR I+AG EAP +++ GA+EA+EIA+A++G+++R+W EQ RTK ALASARDFA+VS+H Sbjct 181 QQTRQIEAGGEAPDIDIRGATEAVEIADAIKGLVERVWEEQGRTKAALASARDFASVSAH 240 Query 241 ELRTPLTAMRTNLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLSALERLAQGELSTSDD 300 ELRTPLTAMRTN+EVL+TLDL ++ RKEV+NDVIRTQSRIEATL ALERLAQGELST DD Sbjct 241 ELRTPLTAMRTNVEVLATLDLSEEGRKEVVNDVIRTQSRIEATLGALERLAQGELSTEDD 300 Query 301 HVPVDITDLLDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGA 360 HVPVDIT+LLDRAAHDA R+YPDL+VSLVP+PT IIVGLPAGLRLAVDNAIANAVKHGGA Sbjct 301 HVPVDITELLDRAAHDAMRVYPDLEVSLVPAPTVIIVGLPAGLRLAVDNAIANAVKHGGA 360 Query 361 TLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQ 420 + VQLSAVSSR GVEIAIDD+G GVPE ER VVF+RFSRGSTASHSGSGLGLALVAQQA+ Sbjct 361 SRVQLSAVSSREGVEIAIDDDGVGVPEEERTVVFDRFSRGSTASHSGSGLGLALVAQQAE 420 Query 421 LHGGTASLENSPLGGARLVLRLPGP 445 LHGGTASLE SPLGGARL+LRLPGP Sbjct 421 LHGGTASLEASPLGGARLLLRLPGP 445 >gi|41406931|ref|NP_959767.1| hypothetical protein MAP0833c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395281|gb|AAS03150.1| hypothetical protein MAP_0833c [Mycobacterium avium subsp. paratuberculosis K-10] Length=451 Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/405 (81%), Positives = 364/405 (90%), Gaps = 1/405 (0%) Query 1 MNILSRIFARTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAAGFA 60 M +LSRI RTPSLR RV VATAIG AI V+I G VVW GIT+ +ERLDRRLDE AGFA Sbjct 1 MKLLSRIVTRTPSLRARVAVATAIGTAIVVVIAGAVVWFGITSAWRERLDRRLDETAGFA 60 Query 61 IPFVPRGLDEIPRSPNDQDALITVRRGNVIKSNSDITLPKLQDDYADTYVRGVRYRVRTV 120 IPF+PRGL+EIPRSP DQD +ITVRR +KSNSD+TLP +++ YADTY+ GVRYRVRTV Sbjct 61 IPFLPRGLNEIPRSPKDQDTVITVRRDGQVKSNSDVTLPPMEEGYADTYINGVRYRVRTV 120 Query 121 EIPGPEPTSVAVGATYDATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQLA 180 E+ P+P +V VGATYD T+A+TNNLHRRV+LIC +IGAAAVFAWLLAAFAVRPFK+LA Sbjct 121 EVRTPQPATVEVGATYDDTIAQTNNLHRRVILICALSIGAAAVFAWLLAAFAVRPFKRLA 180 Query 181 EQTRSIDAGDEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSH 240 +Q RSIDA DE P+V V GASEA+EIAEAMRGMLQRIW EQ+RTKEALASARDF+AV++H Sbjct 181 QQARSIDA-DERPQVAVRGASEAVEIAEAMRGMLQRIWKEQDRTKEALASARDFSAVTAH 239 Query 241 ELRTPLTAMRTNLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLSALERLAQGELSTSDD 300 ELR+PLTAMRTNLEVLSTLD+PD+QRKEVL DVIRTQSRIE TL+ALERLAQGELSTS+D Sbjct 240 ELRSPLTAMRTNLEVLSTLDMPDEQRKEVLGDVIRTQSRIETTLTALERLAQGELSTSED 299 Query 301 HVPVDITDLLDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGA 360 HVPVDIT+LLDRAAHDA RIYP LDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGA Sbjct 300 HVPVDITELLDRAAHDAMRIYPGLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGA 359 Query 361 TLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASH 405 T VQLSAVSSRAGVEIA+DDNGSGVPE ERQVVF+RFSRGSTAS Sbjct 360 TRVQLSAVSSRAGVEIAVDDNGSGVPEDERQVVFDRFSRGSTASQ 404 >gi|339293911|gb|AEJ46022.1| sensor histidine kinase [Mycobacterium tuberculosis CCDC5079] Length=315 Score = 627 bits (1617), Expect = 1e-177, Method: Compositional matrix adjust. Identities = 314/315 (99%), Positives = 315/315 (100%), Gaps = 0/315 (0%) Query 132 VGATYDATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQLAEQTRSIDAGDE 191 +GATYDATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQLAEQTRSIDAGDE Sbjct 1 MGATYDATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQLAEQTRSIDAGDE 60 Query 192 APRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSHELRTPLTAMRT 251 APRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSHELRTPLTAMRT Sbjct 61 APRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSHELRTPLTAMRT 120 Query 252 NLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLSALERLAQGELSTSDDHVPVDITDLLD 311 NLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLSALERLAQGELSTSDDHVPVDITDLLD Sbjct 121 NLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLSALERLAQGELSTSDDHVPVDITDLLD 180 Query 312 RAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGATLVQLSAVSSR 371 RAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGATLVQLSAVSSR Sbjct 181 RAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGATLVQLSAVSSR 240 Query 372 AGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQLHGGTASLENS 431 AGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQLHGGTASLENS Sbjct 241 AGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQLHGGTASLENS 300 Query 432 PLGGARLVLRLPGPS 446 PLGGARLVLRLPGPS Sbjct 301 PLGGARLVLRLPGPS 315 >gi|289749424|ref|ZP_06508802.1| sensor histidine kinase [Mycobacterium tuberculosis T92] gi|289690011|gb|EFD57440.1| sensor histidine kinase [Mycobacterium tuberculosis T92] Length=272 Score = 504 bits (1299), Expect = 9e-141, Method: Compositional matrix adjust. Identities = 249/249 (100%), Positives = 249/249 (100%), Gaps = 0/249 (0%) Query 1 MNILSRIFARTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAAGFA 60 MNILSRIFARTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAAGFA Sbjct 24 MNILSRIFARTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAAGFA 83 Query 61 IPFVPRGLDEIPRSPNDQDALITVRRGNVIKSNSDITLPKLQDDYADTYVRGVRYRVRTV 120 IPFVPRGLDEIPRSPNDQDALITVRRGNVIKSNSDITLPKLQDDYADTYVRGVRYRVRTV Sbjct 84 IPFVPRGLDEIPRSPNDQDALITVRRGNVIKSNSDITLPKLQDDYADTYVRGVRYRVRTV 143 Query 121 EIPGPEPTSVAVGATYDATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQLA 180 EIPGPEPTSVAVGATYDATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQLA Sbjct 144 EIPGPEPTSVAVGATYDATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQLA 203 Query 181 EQTRSIDAGDEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSH 240 EQTRSIDAGDEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSH Sbjct 204 EQTRSIDAGDEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSH 263 Query 241 ELRTPLTAM 249 ELRTPLTAM Sbjct 264 ELRTPLTAM 272 >gi|169628052|ref|YP_001701701.1| sensor histidine kinase PrrB [Mycobacterium abscessus ATCC 19977] gi|169240019|emb|CAM61047.1| Probable sensor histidine kinase PrrB [Mycobacterium abscessus] Length=470 Score = 488 bits (1257), Expect = 6e-136, Method: Compositional matrix adjust. Identities = 262/444 (60%), Positives = 323/444 (73%), Gaps = 14/444 (3%) Query 6 RIFARTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAAGFAIPFVP 65 RIF SLRT V +A A+G + V+ +GT VW+G+ D+ +LDRRLD + V Sbjct 35 RIF----SLRTLVAIA-ALGVMVLVVTLGTWVWLGVEEDQYSQLDRRLDSVSSLG--AVS 87 Query 66 RGLDEIPRSPNDQDA----LITVRRGNVIKS-NSDITLPKLQDDYADTYVRGVRYRVRTV 120 L+ + S D ++T R + KS +D LP L+ YA+T + GV YRVR+ Sbjct 88 NLLNSVISSDKKLDTPDGLVLTARVAGLTKSIPTDTELPLLEPGYANTKINGVEYRVRSF 147 Query 121 EIPGPEPTSVAVGATYDATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQLA 180 PG P VAVGA T + + H R+L IC + + W+++ V PF+ LA Sbjct 148 IAPGNIP--VAVGAPVAETQRQIDRYHMRILAICGGVLIGTVIVGWVISLIVVSPFRLLA 205 Query 181 EQTRSIDAGDEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSH 240 +Q R I+A V V G EA+EI+EA+ GML+RI EQ +TK AL SARDFAAV+SH Sbjct 206 QQARLINAQSNPDDVNVRGVREAVEISEAVEGMLERINTEQEKTKAALESARDFAAVASH 265 Query 241 ELRTPLTAMRTNLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLSALERLAQGELSTSDD 300 ELRTPLTAMRTNLEVLSTL+L DDQR+E++ + IRTQSR+EATLSALERLAQG+L+T DD Sbjct 266 ELRTPLTAMRTNLEVLSTLNLSDDQREEIIEETIRTQSRVEATLSALERLAQGQLTTEDD 325 Query 301 HVPVDITDLLDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGA 360 HVPVDIT+LLDRAAHDA R YP+L++SLVPS T +++GLPAGLRL +DNAI NAVKHGGA Sbjct 326 HVPVDITELLDRAAHDADRSYPNLEISLVPSSTILMLGLPAGLRLVIDNAIKNAVKHGGA 385 Query 361 TLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQ 420 + +QLSA S+ GVEIA+DDNGSG+PE ER VFERFSRGSTASHSGSGLGLALVAQQA+ Sbjct 386 SKIQLSATSTVHGVEIAVDDNGSGIPEAERVQVFERFSRGSTASHSGSGLGLALVAQQAE 445 Query 421 LHGGTASLENSPLGGARLVLRLPG 444 LHGGTA+LE+SPLGGARLVLRLPG Sbjct 446 LHGGTAALESSPLGGARLVLRLPG 469 >gi|296167010|ref|ZP_06849423.1| sensor histidine kinase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897640|gb|EFG77233.1| sensor histidine kinase [Mycobacterium parascrofulaceum ATCC BAA-614] Length=450 Score = 482 bits (1240), Expect = 6e-134, Method: Compositional matrix adjust. Identities = 263/441 (60%), Positives = 318/441 (73%), Gaps = 12/441 (2%) Query 10 RTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAAGFAIPFVPRGLD 69 R SLRT VVVA A+ V+++GT VWVG+TND+ +LDRRLD + + L+ Sbjct 10 RVLSLRTIVVVA-ALSVITLVVLLGTWVWVGVTNDQYSQLDRRLDSVSSLG--DINSLLN 66 Query 70 EIPRSPNDQ-----DALITVRRGNVIKS-NSDITLPKLQDDYADTYVRGVRYRVRTVEIP 123 + + DQ + + T R G+V S S+I LPKL + YA+T + GV+YRVRT Sbjct 67 NVEHASPDQPMPDGNLVRTARIGDVTVSVPSNIKLPKLPNGYANTTIDGVQYRVRTFS-- 124 Query 124 GPEPTSVAVGATYDATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQLAEQT 183 P S+A+ A N LH RVLLIC IG V W+++ V PF LA+Q Sbjct 125 -AGPASIALAAPLAEAQHRINELHLRVLLICASVIGGTVVVGWVISLIMVNPFLLLAQQA 183 Query 184 RSIDAGDEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSHELR 243 R+I+A V+V G EA+EIAEA+ GML RI EQ RTK AL SARDFAAV+SHELR Sbjct 184 RAINAQSSPDEVQVRGVREAVEIAEAVEGMLARIGKEQQRTKAALESARDFAAVASHELR 243 Query 244 TPLTAMRTNLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLSALERLAQGELSTSDDHVP 303 TPLTAMRTNLEVLSTLDLP +QR+EV+ DVIRTQSRIE TL+ALERLAQGEL+T DD VP Sbjct 244 TPLTAMRTNLEVLSTLDLPREQRQEVIGDVIRTQSRIEGTLTALERLAQGELTTVDDFVP 303 Query 304 VDITDLLDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGATLV 363 DIT+LLDRAAHDA R+YP+++VSLVPSPT ++VGLP GLRL +DNAIANAVKHG A + Sbjct 304 FDITELLDRAAHDALRVYPEVEVSLVPSPTVLMVGLPTGLRLVIDNAIANAVKHGNAGKI 363 Query 364 QLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQLHG 423 L+ SS GV+IAIDD+G+GVPE ER VFERF+RGSTAS SGSGLGLALVAQQA+LHG Sbjct 364 LLTVGSSSEGVQIAIDDDGTGVPESERATVFERFARGSTASRSGSGLGLALVAQQAELHG 423 Query 424 GTASLENSPLGGARLVLRLPG 444 GTA+L+ SPLGG RL+L L G Sbjct 424 GTAALQTSPLGGTRLLLNLAG 444 >gi|118462291|ref|YP_879442.1| sensor histidine kinase [Mycobacterium avium 104] gi|118163578|gb|ABK64475.1| sensor-type histidine kinase PrrB [Mycobacterium avium 104] Length=442 Score = 478 bits (1230), Expect = 8e-133, Method: Compositional matrix adjust. Identities = 260/427 (61%), Positives = 309/427 (73%), Gaps = 8/427 (1%) Query 10 RTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAA--GFAIPFVPRG 67 R SLRT V+VA AI V+++GT VWVG+TND+ +LDRRLD + G + Sbjct 2 RVLSLRTIVIVA-AISVMTLVVLLGTWVWVGVTNDQYNQLDRRLDSVSSLGDISSLLTNP 60 Query 68 LDEIP-RSPNDQDALITVRRGNVIKS-NSDITLPKLQDDYADTYVRGVRYRVRTVEIPGP 125 P R+ D + + T R G V S S+I LP+L D YA+T + GV+YRVRT Sbjct 61 QHNSPDRATQDGNLVRTARIGGVTVSVPSNIVLPQLPDGYANTTINGVQYRVRTFT---A 117 Query 126 EPTSVAVGATYDATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQLAEQTRS 185 P S+A+ A N LH RVLLIC IG V W+++ V PF LA+Q R+ Sbjct 118 GPASIALAAPLAEAQHRINELHLRVLLICASVIGGTVVVGWVISLIMVNPFLLLAQQARA 177 Query 186 IDAGDEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSHELRTP 245 I+A V+V G EA+EIAEA+ GML RI EQ RTK AL SARDFAAV+SHELRTP Sbjct 178 INAQSSPDEVQVRGVREAVEIAEAVEGMLARIGKEQQRTKAALESARDFAAVASHELRTP 237 Query 246 LTAMRTNLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLSALERLAQGELSTSDDHVPVD 305 LTAMRTNLEVLSTLDLP +QR+EV+ DVIRTQSRIEATL+ALERLAQGEL+T DD VP D Sbjct 238 LTAMRTNLEVLSTLDLPHEQRQEVIGDVIRTQSRIEATLTALERLAQGELTTVDDFVPFD 297 Query 306 ITDLLDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGATLVQL 365 IT+LLDRAAHDA R+YPD++VSLVPSPT +++GLP GLRL +DNAIANAVKHG A +QL Sbjct 298 ITELLDRAAHDALRVYPDVEVSLVPSPTVLMIGLPTGLRLVIDNAIANAVKHGNAGKIQL 357 Query 366 SAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQLHGGT 425 + SS GVEIAIDD+GSG+PE ER VFERF+RGSTAS SGSGLGLALVAQQA+LHGGT Sbjct 358 TVSSSGEGVEIAIDDDGSGIPESERATVFERFARGSTASRSGSGLGLALVAQQAELHGGT 417 Query 426 ASLENSP 432 A L+NSP Sbjct 418 AELQNSP 424 >gi|41406251|ref|NP_959087.1| hypothetical protein MAP0153 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41394599|gb|AAS02470.1| hypothetical protein MAP_0153 [Mycobacterium avium subsp. paratuberculosis K-10] Length=442 Score = 476 bits (1225), Expect = 4e-132, Method: Compositional matrix adjust. Identities = 259/427 (61%), Positives = 309/427 (73%), Gaps = 8/427 (1%) Query 10 RTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAA--GFAIPFVPRG 67 R SLRT V+VA AI V+++GT VWVG+TND+ +LDRRLD + G + Sbjct 2 RVLSLRTIVIVA-AISVMTLVVLLGTWVWVGVTNDQYNQLDRRLDSVSSLGDISSLLTNP 60 Query 68 LDEIP-RSPNDQDALITVRRGNVIKS-NSDITLPKLQDDYADTYVRGVRYRVRTVEIPGP 125 P R+ D + + T R G V S S+I LP+L D YA+T + GV+YRVRT Sbjct 61 QHNSPDRATPDGNLVRTARIGGVTVSVPSNIVLPQLPDGYANTTINGVQYRVRTFT---A 117 Query 126 EPTSVAVGATYDATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQLAEQTRS 185 P S+A+ A N LH RVLLIC IG V W+++ V PF LA+Q R+ Sbjct 118 GPASIALAAPLAEAQHRINELHLRVLLICASVIGGTVVVGWVISLIMVNPFLLLAQQARA 177 Query 186 IDAGDEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSHELRTP 245 I+A V+V G EA+EIAEA+ GML RI EQ RTK AL SARDFAAV+SHELRTP Sbjct 178 INAQSSPDEVQVRGVREAVEIAEAVEGMLARIGKEQQRTKAALESARDFAAVASHELRTP 237 Query 246 LTAMRTNLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLSALERLAQGELSTSDDHVPVD 305 LTAMRTNLEVLSTLDLP +QR+EV+ DVIRTQSRIEATL+ALERLAQGEL+T DD VP D Sbjct 238 LTAMRTNLEVLSTLDLPHEQRQEVIGDVIRTQSRIEATLTALERLAQGELTTVDDFVPFD 297 Query 306 ITDLLDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGATLVQL 365 IT+LLDRAAHDA R+YPD++VSLVPSPT +++GLP GLRL +DNAIANAVKHG A +QL Sbjct 298 ITELLDRAAHDALRVYPDVEVSLVPSPTVLMIGLPTGLRLVIDNAIANAVKHGNAGKIQL 357 Query 366 SAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQLHGGT 425 + SS GVEIAIDD+GSG+PE ER VFERF+RGSTA+ SGSGLGLALVAQQA+LHGGT Sbjct 358 TVSSSGEGVEIAIDDDGSGIPESERATVFERFARGSTAARSGSGLGLALVAQQAELHGGT 417 Query 426 ASLENSP 432 A L+NSP Sbjct 418 AELQNSP 424 >gi|240172707|ref|ZP_04751366.1| integral membrane sensor signal transduction histidine kinase [Mycobacterium kansasii ATCC 12478] Length=464 Score = 474 bits (1221), Expect = 1e-131, Method: Compositional matrix adjust. Identities = 252/421 (60%), Positives = 306/421 (73%), Gaps = 15/421 (3%) Query 32 IVGTVVWVGITNDRKERLDRRLDEAAGF----AIPFVPRG-LDEIPRSPNDQDALITVRR 86 +G VWVGITN++ +LDR+LD + A+ +G +DE P + TVR Sbjct 37 FLGAWVWVGITNNQYSQLDRQLDSLSTLGDVSALGGTHQGNVDE----PMPDGMVRTVRS 92 Query 87 GNVIKSN-SDITLPKLQDDYADTYVRGVRYRVRTVEIPGPEPTSVAVGATYDATVAETNN 145 G + S S++TLP+ + Y V G+ YRV T G S+A+GA Sbjct 93 GGITVSKPSNVTLPEFGNGYTTATVNGIPYRVHTFITGG---ASIAIGAPITEARQAIKQ 149 Query 146 LHRRVLLICT-FAIGAAAVFAWLLAAFAVRPFKQLAEQTRSIDAGDEAPRVEVHGASEAI 204 LH RVLLIC F +G V +W+ + ++PF+ LA+ R+I+A V+V G EA+ Sbjct 150 LHLRVLLICGGFVVGTFLVGSWMWS-IMIKPFRLLAQHARAINAQSSPEEVQVDGVWEAV 208 Query 205 EIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSHELRTPLTAMRTNLEVLSTLDLPDD 264 EIAEA+ GML RI EQ RTK AL SARDFAAV+SHELRTPLTAMRTNLEVL TLDLP + Sbjct 209 EIAEAVEGMLARIGTEQQRTKAALESARDFAAVASHELRTPLTAMRTNLEVLHTLDLPPE 268 Query 265 QRKEVLNDVIRTQSRIEATLSALERLAQGELSTSDDHVPVDITDLLDRAAHDAARIYPDL 324 QRKE+ D +RTQSRIEATL+ALERLAQGELSTSDDHVP+DIT+LLDRAAHDA R+YPDL Sbjct 269 QRKEITEDTMRTQSRIEATLTALERLAQGELSTSDDHVPLDITELLDRAAHDAVRVYPDL 328 Query 325 DVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGATLVQLSAVSSRAGVEIAIDDNGSG 384 +V+L PSP +++GLP GLRL +DNA+ANAVKHG AT VQLSA++SR GVEI IDDNG+G Sbjct 329 NVTLRPSPAVLMLGLPTGLRLVIDNAVANAVKHGQATQVQLSAITSRHGVEIVIDDNGTG 388 Query 385 VPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQLHGGTASLENSPLGGARLVLRLPG 444 +PEGER +FERF+RGS SHSGSGLGLALVAQQA+LHGGTASLE+SP GG RLVLRLPG Sbjct 389 IPEGERTAMFERFTRGSKTSHSGSGLGLALVAQQAELHGGTASLEDSPFGGTRLVLRLPG 448 Query 445 P 445 P Sbjct 449 P 449 >gi|336457759|gb|EGO36755.1| signal transduction histidine kinase [Mycobacterium avium subsp. paratuberculosis S397] Length=442 Score = 474 bits (1219), Expect = 2e-131, Method: Compositional matrix adjust. Identities = 258/427 (61%), Positives = 309/427 (73%), Gaps = 8/427 (1%) Query 10 RTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAA--GFAIPFVPRG 67 R SLRT V+VA AI V+++GT VWVG+TND+ +LDRRLD + G + Sbjct 2 RVLSLRTIVIVA-AISVMTLVVLLGTWVWVGVTNDQYNQLDRRLDSVSSLGDISSLLTNP 60 Query 68 LDEIP-RSPNDQDALITVRRGNVIKS-NSDITLPKLQDDYADTYVRGVRYRVRTVEIPGP 125 P R+ D + + T R G V S S+I LP+L D YA+T + GV+YRVRT Sbjct 61 QHNSPDRATPDGNLVRTARIGGVTVSVPSNIVLPQLPDGYANTTINGVQYRVRTFT---A 117 Query 126 EPTSVAVGATYDATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQLAEQTRS 185 P S+A+ A N LH RVLLIC IG V W+++ V PF LA+Q R+ Sbjct 118 GPASIALAAPLAEAQHRINELHLRVLLICASVIGGTVVVGWVISLIMVNPFLLLAQQARA 177 Query 186 IDAGDEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSHELRTP 245 I+A V+V G EA+EIAEA+ GML RI EQ RTK AL SARDFAAV+S+ELRTP Sbjct 178 INAQSSPDEVQVRGVREAVEIAEAVEGMLARIGKEQQRTKAALESARDFAAVASYELRTP 237 Query 246 LTAMRTNLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLSALERLAQGELSTSDDHVPVD 305 LTAMRTNLEVLSTLDLP +QR+EV+ DVIRTQSRIEATL+ALERLAQGEL+T DD VP D Sbjct 238 LTAMRTNLEVLSTLDLPHEQRQEVIGDVIRTQSRIEATLTALERLAQGELTTVDDFVPFD 297 Query 306 ITDLLDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGATLVQL 365 IT+LLDRAAHDA R+YPD++VSLVPSPT +++GLP GLRL +DNAIANAVKHG A +QL Sbjct 298 ITELLDRAAHDALRVYPDVEVSLVPSPTVLMIGLPTGLRLVIDNAIANAVKHGNAGKIQL 357 Query 366 SAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQLHGGT 425 + SS GVEIAIDD+GSG+PE ER VFERF+RGSTA+ SGSGLGLALVAQQA+LHGGT Sbjct 358 TVSSSGEGVEIAIDDDGSGIPESERATVFERFARGSTAARSGSGLGLALVAQQAELHGGT 417 Query 426 ASLENSP 432 A L+NSP Sbjct 418 AELQNSP 424 >gi|120403110|ref|YP_952939.1| integral membrane sensor signal transduction histidine kinase [Mycobacterium vanbaalenii PYR-1] gi|119955928|gb|ABM12933.1| integral membrane sensor signal transduction histidine kinase [Mycobacterium vanbaalenii PYR-1] Length=454 Score = 469 bits (1207), Expect = 4e-130, Method: Compositional matrix adjust. Identities = 250/438 (58%), Positives = 317/438 (73%), Gaps = 7/438 (1%) Query 10 RTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAA--GFAIPFVPRG 67 R SLR+ +V+ + +G I VL +G VWVG+TND+ ++LDRRLD + G + Sbjct 17 RMLSLRS-IVILSQLGVIILVLTLGVWVWVGVTNDQYDQLDRRLDSLSSLGDVNTLLRSA 75 Query 68 LDEIPRSPNDQDALITVRRGNV-IKSNSDITLPKLQDDYADTYVRGVRYRVRTVEIPGPE 126 D + P + + T R G + + + +++ LP+L + YAD + GV YRVRT+ Sbjct 76 QDGVGPEPTEGGLVRTARIGGITVSTPAEVVLPELPNGYADATIEGVEYRVRTITTG--- 132 Query 127 PTSVAVGATYDATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQLAEQTRSI 186 S+A+GA T A + LH RV IC I + + W++ V PF+ LA Q R+I Sbjct 133 TASIALGAPLADTQARIDGLHWRVFWICAGVILSTLLIGWVIGLIMVNPFRLLARQARAI 192 Query 187 DAGDEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSHELRTPL 246 +A V+V G EA+EI+EA+ GML RI +EQ RT+ AL +ARDFA+V+SHELRTPL Sbjct 193 NAQSNPDEVQVRGVWEAVEISEAVEGMLARIGDEQQRTRAALETARDFASVASHELRTPL 252 Query 247 TAMRTNLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLSALERLAQGELSTSDDHVPVDI 306 TAMRTNLEVLSTLDL +QR+EV+ DVIRTQSRIEATL+ALERLAQG+L+T +D VPVDI Sbjct 253 TAMRTNLEVLSTLDLAPEQRQEVIGDVIRTQSRIEATLTALERLAQGQLTTVEDFVPVDI 312 Query 307 TDLLDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGATLVQLS 366 +LLDRAAHDA R YP +DVSL S T +++G+PAGLRL +DNAIANAVKHGGAT ++LS Sbjct 313 AELLDRAAHDAMRNYPGVDVSLASSTTVLMLGMPAGLRLVIDNAIANAVKHGGATQIRLS 372 Query 367 AVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQLHGGTA 426 VSS++GVEIA+DDNGSGVPE ER VFERF RG+TAS SGSGLGLALVAQQA++HGGTA Sbjct 373 VVSSQSGVEIAVDDNGSGVPEEERAAVFERFHRGTTASRSGSGLGLALVAQQAEIHGGTA 432 Query 427 SLENSPLGGARLVLRLPG 444 SLE SP GG RL+LRLPG Sbjct 433 SLEVSPQGGTRLMLRLPG 450 >gi|342860130|ref|ZP_08716782.1| hypothetical protein MCOL_14665 [Mycobacterium colombiense CECT 3035] gi|342132508|gb|EGT85737.1| hypothetical protein MCOL_14665 [Mycobacterium colombiense CECT 3035] Length=442 Score = 468 bits (1204), Expect = 9e-130, Method: Compositional matrix adjust. Identities = 257/427 (61%), Positives = 302/427 (71%), Gaps = 8/427 (1%) Query 10 RTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAA--GFAIPFVPRG 67 R SLRT V+VA AI V+++GT VWVG+TND+ +LDRRLD + G + Sbjct 2 RVLSLRTIVIVA-AISVMTLVVLLGTWVWVGVTNDQYNQLDRRLDSVSSLGDISSLLNNA 60 Query 68 LDEIPRSPNDQDALITVRR--GNVIKSNSDITLPKLQDDYADTYVRGVRYRVRTVEIPGP 125 P P L+ R G + S I LP+L D YA+T + GV+YRVRT Sbjct 61 EHTSPDRPAPDGNLVRTARIAGVTVSVPSSIVLPQLPDGYANTTINGVQYRVRTFT---A 117 Query 126 EPTSVAVGATYDATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQLAEQTRS 185 P S+A+ A N LH RVLLIC IG V W+++ V PF LA+Q R+ Sbjct 118 GPASIALAAPRAEAQHRINELHLRVLLICASVIGGTVVVGWVISLIMVNPFLLLAQQARA 177 Query 186 IDAGDEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSHELRTP 245 I+A V+V G EA+EIAEA+ GML RI EQ RTK AL SARDFAAV+SHELRTP Sbjct 178 INAQSSPDEVQVRGVREAVEIAEAVEGMLARIGKEQQRTKAALDSARDFAAVASHELRTP 237 Query 246 LTAMRTNLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLSALERLAQGELSTSDDHVPVD 305 LTAMRTNLEVLSTLDLP +QR EV+ DVIRTQSRIEATL+ALERLAQGEL+T DD VP D Sbjct 238 LTAMRTNLEVLSTLDLPPEQRHEVIGDVIRTQSRIEATLTALERLAQGELTTVDDFVPFD 297 Query 306 ITDLLDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGATLVQL 365 IT+LLDRAAHDA RIYPD++VSLVPSPT ++VGLP GLRL +DNAIANAVKHG A + L Sbjct 298 ITELLDRAAHDALRIYPDVEVSLVPSPTVLMVGLPTGLRLVIDNAIANAVKHGNAGKILL 357 Query 366 SAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQLHGGT 425 + SS GVEIAIDD+G+GVPE ER VFERF+RGSTAS SGSGLGLALVAQQA+LHGGT Sbjct 358 TVGSSGEGVEIAIDDDGAGVPESERATVFERFTRGSTASRSGSGLGLALVAQQAELHGGT 417 Query 426 ASLENSP 432 A+L+ SP Sbjct 418 AALQTSP 424 >gi|254822564|ref|ZP_05227565.1| hypothetical protein MintA_21724 [Mycobacterium intracellulare ATCC 13950] Length=442 Score = 467 bits (1202), Expect = 2e-129, Method: Compositional matrix adjust. Identities = 256/429 (60%), Positives = 305/429 (72%), Gaps = 12/429 (2%) Query 10 RTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAAGFAIPFVPRGLD 69 R SLRT ++VA AI V+++GT VWVG+TND+ +LDRRLD + + L+ Sbjct 2 RVLSLRTILIVA-AISVMTLVVLLGTWVWVGVTNDQYSQLDRRLDSVSSLG--DISSLLN 58 Query 70 EIP-----RSPNDQDALITVRRGNV-IKSNSDITLPKLQDDYADTYVRGVRYRVRTVEIP 123 P R D + + T R G V + + S I LP+L D YA+T + GV+YRVRT Sbjct 59 TAPPATPDRHMPDGNLVRTARIGGVTVSAPSSIVLPQLPDGYANTTINGVQYRVRTFT-- 116 Query 124 GPEPTSVAVGATYDATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQLAEQT 183 P S+A+ A N LH RVLLIC IG V W+++ V PF LA+Q Sbjct 117 -AGPASIALAAPLAEAQHRINELHLRVLLICASVIGGTVVVGWVISLIMVNPFLLLAQQA 175 Query 184 RSIDAGDEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSHELR 243 R+I+A V+V G EA+EIAEA+ GML RI EQ RTK AL SARDFAAV+SHELR Sbjct 176 RAINAQSSPDEVQVRGVREAVEIAEAVEGMLARIGKEQQRTKAALESARDFAAVASHELR 235 Query 244 TPLTAMRTNLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLSALERLAQGELSTSDDHVP 303 TPLTAMRTNLEVLSTLDLP +QR EV+ DVIRTQSRIE TL+ALERLAQGEL+T DD VP Sbjct 236 TPLTAMRTNLEVLSTLDLPPEQRHEVIGDVIRTQSRIEGTLTALERLAQGELTTVDDFVP 295 Query 304 VDITDLLDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGATLV 363 DIT+LLDRAAHDA R YP ++VSLVPSPT ++VGLP GLRL +DNAIANAVKHG A + Sbjct 296 FDITELLDRAAHDALRSYPAVEVSLVPSPTVLMVGLPTGLRLVIDNAIANAVKHGNAGKI 355 Query 364 QLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQLHG 423 QL+ SS GVEIAIDD+G+GVPE ER VFERF+RGSTAS SGSGLGLALVAQQA+LHG Sbjct 356 QLTVSSSGEGVEIAIDDDGTGVPESERATVFERFARGSTASRSGSGLGLALVAQQAELHG 415 Query 424 GTASLENSP 432 GTA+L+ SP Sbjct 416 GTAALQTSP 424 >gi|145224822|ref|YP_001135500.1| integral membrane sensor signal transduction histidine kinase [Mycobacterium gilvum PYR-GCK] gi|315445152|ref|YP_004078031.1| signal transduction histidine kinase [Mycobacterium sp. Spyr1] gi|145217308|gb|ABP46712.1| integral membrane sensor signal transduction histidine kinase [Mycobacterium gilvum PYR-GCK] gi|315263455|gb|ADU00197.1| signal transduction histidine kinase [Mycobacterium sp. Spyr1] Length=454 Score = 466 bits (1198), Expect = 5e-129, Method: Compositional matrix adjust. Identities = 251/438 (58%), Positives = 314/438 (72%), Gaps = 7/438 (1%) Query 10 RTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAAGFA-IPFVPRGL 68 R SLR+ +V+ + +G I VL +G VWVG+TND+ ++LDRRLD + + + R Sbjct 17 RWLSLRS-IVILSQLGVTILVLTLGVWVWVGVTNDQYDQLDRRLDSLSSLGDVNTLLRSA 75 Query 69 DE-IPRSPNDQDALITVRR-GNVIKSNSDITLPKLQDDYADTYVRGVRYRVRTVEIPGPE 126 E + P + + T R G+ + +DI LP L YAD + GV YRVRT++ Sbjct 76 QEGVGPEPTEGGLVRTARWAGSTVSIPADIVLPDLDSGYADATIDGVEYRVRTIKTGN-- 133 Query 127 PTSVAVGATYDATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQLAEQTRSI 186 S+A+GA T A ++LH RV IC+ I + W++ V PF+ LA+Q R+I Sbjct 134 -ASIALGAPMAETQARIDSLHWRVFWICSGVILTTMLVGWVIGLIMVNPFRLLAQQARAI 192 Query 187 DAGDEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSHELRTPL 246 +A V+V G EA+EI+EA+ GML RI +EQ RT+ AL SARDFAAV+SHELRTPL Sbjct 193 NAQSNPDEVQVRGVWEAVEISEAVEGMLARIGDEQQRTRAALESARDFAAVASHELRTPL 252 Query 247 TAMRTNLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLSALERLAQGELSTSDDHVPVDI 306 TAMRTNLEVL+TLDL +QR+EVL DVIRTQSRIEATL+ALERLAQGEL+T DD VPVD+ Sbjct 253 TAMRTNLEVLATLDLGAEQRQEVLGDVIRTQSRIEATLTALERLAQGELTTVDDFVPVDV 312 Query 307 TDLLDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGATLVQLS 366 +LLDRAAHDA YP ++V+L S T +++G+PAGLRL +DNAIANAVKHGGAT ++LS Sbjct 313 AELLDRAAHDAMHNYPGVEVTLASSTTVLMLGMPAGLRLVIDNAIANAVKHGGATQIRLS 372 Query 367 AVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQLHGGTA 426 VSS GVEIA+DDNGSGVPE ER VF RF RG+TAS SGSGLGLALVAQQA++HGGTA Sbjct 373 VVSSHTGVEIAVDDNGSGVPEEERAEVFARFHRGTTASRSGSGLGLALVAQQAEIHGGTA 432 Query 427 SLENSPLGGARLVLRLPG 444 SLE SP GG RL+LRLPG Sbjct 433 SLEVSPQGGTRLMLRLPG 450 >gi|126435589|ref|YP_001071280.1| integral membrane sensor signal transduction histidine kinase [Mycobacterium sp. JLS] gi|126235389|gb|ABN98789.1| integral membrane sensor signal transduction histidine kinase [Mycobacterium sp. JLS] Length=451 Score = 460 bits (1183), Expect = 3e-127, Method: Compositional matrix adjust. Identities = 263/437 (61%), Positives = 319/437 (73%), Gaps = 11/437 (2%) Query 13 SLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAA-----GFAIPFVPRG 67 SLRT +V+ A+ + VL +GT VW+G+TN++ +LDR+LD G + G Sbjct 17 SLRT-IVIVAALSVVVLVLTLGTWVWIGVTNEQYSQLDRQLDSVTSLGDFGTLLNAASTG 75 Query 68 LDEIPRSPNDQDALITVRRGNVIKS-NSDITLPKLQDDYADTYVRGVRYRVRTVEIPGPE 126 D+ P D+ + T R G V S DI LP+L YA+T + GV YRVRT Sbjct 76 -DDPADPPADRTLVRTARIGGVTVSVPKDIVLPQLDIGYANTTIDGVEYRVRTF---AAG 131 Query 127 PTSVAVGATYDATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQLAEQTRSI 186 P ++A+G+ T + LH RV+LIC I V W++ + PF+ LA+Q R+I Sbjct 132 PATIALGSPLSETQRRIDQLHLRVVLICGGVIAGTVVVGWVMWLIMINPFRLLAQQARAI 191 Query 187 DAGDEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSHELRTPL 246 +A + V+V G EA EIAEA+ GML RI EQ RTK AL SARDFAAV+SHELRTPL Sbjct 192 NAQSKPEEVQVGGVWEAAEIAEAVEGMLARIGEEQQRTKAALESARDFAAVASHELRTPL 251 Query 247 TAMRTNLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLSALERLAQGELSTSDDHVPVDI 306 TAMRTNLEVLSTLD+ D+QRKEV+NDV+RTQ+RIEATL+ALERLAQGEL+T++DHVPVDI Sbjct 252 TAMRTNLEVLSTLDMTDEQRKEVINDVVRTQTRIEATLTALERLAQGELTTAEDHVPVDI 311 Query 307 TDLLDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGATLVQLS 366 T+LLDRAAHDA R YP LDVSLVPS I+GLPAGLRL +DNAIANAVKHG AT ++LS Sbjct 312 TELLDRAAHDALRSYPGLDVSLVPSAPVRILGLPAGLRLVIDNAIANAVKHGDATQIRLS 371 Query 367 AVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQLHGGTA 426 A+ S VEIA+DDNGSGVPE ER++VFERFSRGSTAS SGSGLGLALVAQQA+LHGGTA Sbjct 372 AIRSGEDVEIAVDDNGSGVPEQERKLVFERFSRGSTASRSGSGLGLALVAQQAELHGGTA 431 Query 427 SLENSPLGGARLVLRLP 443 SLE SP+GGARL+LRLP Sbjct 432 SLETSPMGGARLLLRLP 448 >gi|108799961|ref|YP_640158.1| periplasmic sensor signal transduction histidine kinase [Mycobacterium sp. MCS] gi|119869071|ref|YP_939023.1| integral membrane sensor signal transduction histidine kinase [Mycobacterium sp. KMS] gi|108770380|gb|ABG09102.1| periplasmic sensor signal transduction histidine kinase [Mycobacterium sp. MCS] gi|119695160|gb|ABL92233.1| integral membrane sensor signal transduction histidine kinase [Mycobacterium sp. KMS] Length=451 Score = 459 bits (1182), Expect = 3e-127, Method: Compositional matrix adjust. Identities = 263/437 (61%), Positives = 319/437 (73%), Gaps = 11/437 (2%) Query 13 SLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAA-----GFAIPFVPRG 67 SLRT +V+ A+ + VL +GT VW+G+TN++ +LDR+LD G + G Sbjct 17 SLRT-IVIVAALSVVVLVLTLGTWVWIGVTNEQYSQLDRQLDSVTSLGDFGTLLNAASTG 75 Query 68 LDEIPRSPNDQDALITVRRGNVIKS-NSDITLPKLQDDYADTYVRGVRYRVRTVEIPGPE 126 D+ P D+ + T R G V S DI LP+L YA+T + GV YRVRT Sbjct 76 -DDPADPPVDRTLVRTARIGGVTVSVPKDIVLPQLDIGYANTTIDGVEYRVRTF---AAG 131 Query 127 PTSVAVGATYDATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQLAEQTRSI 186 P ++A+G+ T + LH RV+LIC I V W++ + PF+ LA+Q R+I Sbjct 132 PATIALGSPLSETQRRIDQLHLRVVLICGGVIAGTVVVGWVMWLIMINPFRLLAQQARAI 191 Query 187 DAGDEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSHELRTPL 246 +A + V+V G EA EIAEA+ GML RI EQ RTK AL SARDFAAV+SHELRTPL Sbjct 192 NAQSKPEEVQVGGVWEAAEIAEAVEGMLARIGEEQQRTKAALESARDFAAVASHELRTPL 251 Query 247 TAMRTNLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLSALERLAQGELSTSDDHVPVDI 306 TAMRTNLEVLSTLD+ D+QRKEV+NDV+RTQ+RIEATL+ALERLAQGEL+T++DHVPVDI Sbjct 252 TAMRTNLEVLSTLDMTDEQRKEVINDVVRTQTRIEATLTALERLAQGELTTAEDHVPVDI 311 Query 307 TDLLDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGATLVQLS 366 T+LLDRAAHDA R YP LDVSLVPS I+GLPAGLRL +DNAIANAVKHG AT ++LS Sbjct 312 TELLDRAAHDALRSYPGLDVSLVPSAPVRILGLPAGLRLVIDNAIANAVKHGDATQIRLS 371 Query 367 AVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQLHGGTA 426 A+ S VEIA+DDNGSGVPE ER++VFERFSRGSTAS SGSGLGLALVAQQA+LHGGTA Sbjct 372 AIRSGEDVEIAVDDNGSGVPEQERKLVFERFSRGSTASRSGSGLGLALVAQQAELHGGTA 431 Query 427 SLENSPLGGARLVLRLP 443 SLE SP+GGARL+LRLP Sbjct 432 SLETSPMGGARLLLRLP 448 >gi|118469082|ref|YP_887124.1| sensor-type histidine kinase PrrB [Mycobacterium smegmatis str. MC2 155] gi|118170369|gb|ABK71265.1| sensor-type histidine kinase PrrB [Mycobacterium smegmatis str. MC2 155] Length=465 Score = 448 bits (1153), Expect = 8e-124, Method: Compositional matrix adjust. Identities = 248/432 (58%), Positives = 307/432 (72%), Gaps = 9/432 (2%) Query 6 RIFARTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAAGFA----I 61 R R SLRT +V+ A+ + VL +GT VW+G+TND+ +LDRRLD + + Sbjct 16 RPVMRVLSLRT-IVIVAALSVVVLVLTLGTWVWIGVTNDQYAQLDRRLDSLSSLGDVSTL 74 Query 62 PFVPRGLDEIPRSPNDQDALITVRRGNVIKS-NSDITLPKLQDDYADTYVRGVRYRVRTV 120 R D +D + T G V S SDI LP L++ YA+T + GV YRVRT Sbjct 75 LNSTRETDADNAGHDDGGLVRTAYIGGVTVSVPSDIVLPHLENGYANTTIDGVEYRVRTF 134 Query 121 EIPGPEPTSVAVGATYDATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQLA 180 P ++A+GA T + LH RV+LIC I V W+++ + PF+ LA Sbjct 135 T---AGPATIALGAPLAETQRRIDELHLRVVLICAGVIAGTVVVGWVISLVMINPFRLLA 191 Query 181 EQTRSIDAGDEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSH 240 +Q R+I+A V+V G EA+EIAEA+ GML RI +EQ RTK AL SARDFAAV+SH Sbjct 192 QQARAINAQSNPEEVKVRGVREAVEIAEAVEGMLARIGSEQERTKAALESARDFAAVASH 251 Query 241 ELRTPLTAMRTNLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLSALERLAQGELSTSDD 300 ELRTPLTAMRTNLEVLSTLD+ +QR+EV+ DV+RTQSRIEATL+ALERLAQGEL+T +D Sbjct 252 ELRTPLTAMRTNLEVLSTLDMTPEQRQEVIGDVMRTQSRIEATLTALERLAQGELTTVED 311 Query 301 HVPVDITDLLDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGA 360 VP+D+T+LLDRAAHDA YP L V+L+PSPT +++G+PAGLRL +DNAIANAVKHGGA Sbjct 312 FVPMDVTELLDRAAHDAQHTYPGLKVTLMPSPTVLMLGMPAGLRLVIDNAIANAVKHGGA 371 Query 361 TLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQ 420 T ++LSAVSS VEIA+DDNGSGVPE ER VFERF+RGSTAS SGSGLGLALVAQQA+ Sbjct 372 TEIRLSAVSSADDVEIAVDDNGSGVPEAERAEVFERFARGSTASRSGSGLGLALVAQQAE 431 Query 421 LHGGTASLENSP 432 LHGG A+LE SP Sbjct 432 LHGGKAALEESP 443 >gi|254773191|ref|ZP_05214707.1| hypothetical protein MaviaA2_00706 [Mycobacterium avium subsp. avium ATCC 25291] Length=609 Score = 421 bits (1081), Expect = 2e-115, Method: Compositional matrix adjust. Identities = 231/397 (59%), Positives = 281/397 (71%), Gaps = 10/397 (2%) Query 10 RTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAAGF----AIPFVP 65 R SLRT V+VA AI V+++GT VWVG+TND+ +LDRRLD + ++ P Sbjct 2 RVLSLRTIVIVA-AISVMTLVVLLGTWVWVGVTNDQYNQLDRRLDSVSSLGDISSLLTNP 60 Query 66 RGLDEIPRSPNDQDALITVRRGNVIKS-NSDITLPKLQDDYADTYVRGVRYRVRTVEIPG 124 + + R+ D + + T R G V S S+I LP+L D YA+T + GV+YRVRT Sbjct 61 QH-NSPDRATPDGNLVRTARIGGVTVSVPSNIVLPQLPDGYANTTINGVQYRVRTFT--- 116 Query 125 PEPTSVAVGATYDATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQLAEQTR 184 P S+A+ A N LH RVLLIC IG V W+++ V PF LA+Q R Sbjct 117 AGPASIALAAPLAEAQHRINELHLRVLLICASVIGGTVVVGWVISLIMVNPFLLLAQQAR 176 Query 185 SIDAGDEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSHELRT 244 +I+A V+V G EA+EIAEA+ GML RI EQ RTK AL SARDFAAV+SHELRT Sbjct 177 AINAQSSPDEVQVRGVREAVEIAEAVEGMLARIGKEQQRTKAALESARDFAAVASHELRT 236 Query 245 PLTAMRTNLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLSALERLAQGELSTSDDHVPV 304 PLTAMRTNLEVLSTLDLP +QR+EV+ DVIRTQSRIEATL+ALERLAQGEL+T DD VP Sbjct 237 PLTAMRTNLEVLSTLDLPHEQRQEVIGDVIRTQSRIEATLTALERLAQGELTTVDDFVPF 296 Query 305 DITDLLDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGATLVQ 364 DIT+LLDRAAHDA R+YPD++VSLVPSPT +++GLP GLRL +DNAIANAVKHG A +Q Sbjct 297 DITELLDRAAHDALRVYPDVEVSLVPSPTVLMIGLPTGLRLVIDNAIANAVKHGNAGKIQ 356 Query 365 LSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGS 401 L+ SS GVEIAIDD+GSG+PE ER VFERF+RG Sbjct 357 LTVSSSGEGVEIAIDDDGSGIPESERATVFERFARGC 393 >gi|312138448|ref|YP_004005784.1| two component system sensor kinase [Rhodococcus equi 103S] gi|311887787|emb|CBH47099.1| two component system sensor kinase [Rhodococcus equi 103S] Length=434 Score = 338 bits (867), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 212/443 (48%), Positives = 274/443 (62%), Gaps = 22/443 (4%) Query 10 RTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEA-------AGFAIP 62 R SLR RV ATA+GA I V VG + + I + ++LDRRL+ A AG A P Sbjct 2 RPQSLRARVAAATALGATIVVAAVGVYLALAIARNNLQQLDRRLETASRVLVVNAGAAAP 61 Query 63 FVPRGLDEIPRSPNDQDAL-ITVRRGNVIKSNSDITLPKLQDDYADTYVRGVRYRVRTVE 121 F+ D A +T+R G + S++ LP+L V G +R T Sbjct 62 FL--------NVLGDGGAFAVTIRAGEKVVSSTSSRLPELDPGSHTVDVAGTPFRTFTAP 113 Query 122 IPGPEPTSVAVGATYDATVAE-TNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQLA 180 + GP+ T++ A A + T + ++V L+ AI AA WL AVRP L Sbjct 114 L-GPDSTTLLTVAVPLAEAKDPTTDQQQQVALVGVGAIVAATGLGWLFGGRAVRP---LV 169 Query 181 EQTRSIDAGDEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSH 240 E T+ + D G EA E+A A MLQ + + Q RT AL +ARDFAA S+H Sbjct 170 ELTQRVGRRDRDLATAASGVREADELAAAAGAMLQDVSDAQERTAAALDTARDFAAASAH 229 Query 241 ELRTPLTAMRTNLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLSALERLAQGELSTSDD 300 ELRTPLTAMRT+LEVL+TLDL D+QR E+L D+ RTQ R+EATL+ALERLA GELS+ D Sbjct 230 ELRTPLTAMRTDLEVLTTLDLSDEQRAEILADLARTQGRLEATLTALERLASGELSSEKD 289 Query 301 HVPVDITDLLDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGA 360 HV +D+T+L D AA DA R+ PDL V++ P ++ GLP GLRL++DNAI+NAV+HGGA Sbjct 290 HVDLDLTELCDLAAEDAQRLRPDLTVTVDAPPGLVVRGLPVGLRLSIDNAISNAVRHGGA 349 Query 361 TLVQLSAVSSRAG-VEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQA 419 V + A + G V + +DD+G+G+P ER VFERF RGS+A+ GSGLGLALVAQQA Sbjct 350 RHVSIGAHRNDDGTVTVTVDDDGTGIPHEERVEVFERFRRGSSAAKGGSGLGLALVAQQA 409 Query 420 QLHGGTASLENSPLGGARLVLRL 442 LHGGTA L +SPLGGARLV+ L Sbjct 410 GLHGGTAHLADSPLGGARLVVTL 432 >gi|333918530|ref|YP_004492111.1| sensor-type histidine kinase prrB [Amycolicicoccus subflavus DQS3-9A1] gi|333480751|gb|AEF39311.1| Sensor-type histidine kinase prrB [Amycolicicoccus subflavus DQS3-9A1] Length=441 Score = 326 bits (836), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 211/437 (49%), Positives = 281/437 (65%), Gaps = 7/437 (1%) Query 11 TPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAAGFAIPFVPRGL-D 69 +PSL TR +A A GA I V+ V VW G+ + +LD+RLD + A + L D Sbjct 5 SPSLLTRAALAAAAGATIVVVTVAVFVWAGVQRESYAQLDQRLDVLSTIAATVANQSLYD 64 Query 70 EIPRSPNDQDALITVRRGNVIKSNSDITLPKLQDDYADTYVRGVRYRVRTVEIPGPEPTS 129 + P + +A T R G +I ++ LP+L + + + G YR+RT+ +P T+ Sbjct 65 ARQQIPPEYEA--TYRAGPIIIPAHNLALPELPEGFTTLEIEGAEYRIRTIAVPDRPRTT 122 Query 130 VAVGATYDATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQLAEQTRSIDAG 189 ++V A T + R +L+ AI AAA WLL FA+RP +QLA QTR ID Sbjct 123 ISVAAPTAPTEEQIGEERRNTILVSMLAIAAAAALGWLLGGFAIRPLRQLAVQTRQIDPE 182 Query 190 DEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSHELRTPLTAM 249 PR V GA EA E+A A+ GML+RI E+ RT EAL +ARDFAAVS+HELRTPLTAM Sbjct 183 TATPRPSVTGALEAEELAAAISGMLERITREKQRTFEALETARDFAAVSAHELRTPLTAM 242 Query 250 RTNLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLSALERLAQGELSTSDDHVPVDITDL 309 RTNLEVL +LD P+ +R+EV+ + +++ RIE TL ALERLA G L+ D+ +D+ ++ Sbjct 243 RTNLEVLESLDPPEPERREVIIETLQSVRRIEQTLQALERLAAGNLTAEADYEDIDLAEV 302 Query 310 LDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGATLVQLSAVS 369 LDR A +A R++ L V++ S +I GL AGLRLA+DNAI NAV+HG A V+LS S Sbjct 303 LDRCAQEARRLHTGLVVTVHDSGPTVIRGLAAGLRLAIDNAITNAVRHGDAEHVELSLHS 362 Query 370 SR----AGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQLHGGT 425 S G+EI IDD+G G+P +R+ VFERF+RGS AS GSGLGLALVAQQA+LHGG Sbjct 363 STETKDGGIEITIDDDGCGIPAEDRERVFERFTRGSRASAPGSGLGLALVAQQAELHGGE 422 Query 426 ASLENSPLGGARLVLRL 442 A++ SP GGARL LR+ Sbjct 423 ATMSKSPFGGARLTLRV 439 >gi|111021967|ref|YP_704939.1| sensor kinase, two-component system [Rhodococcus jostii RHA1] gi|110821497|gb|ABG96781.1| sensor kinase, two-component system [Rhodococcus jostii RHA1] Length=454 Score = 315 bits (808), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 203/439 (47%), Positives = 267/439 (61%), Gaps = 11/439 (2%) Query 8 FARTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAAGFAIPFVPR- 66 R+ SLRTRV ATA+GA I V+ +G +V + I + +LDRRL+ A+ +P Sbjct 1 MKRSFSLRTRVAAATALGATIIVVALGILVSLAINRNNLSQLDRRLETASDVLVPNAATA 60 Query 67 GLDEIPRSPNDQDAL-ITVRR--GNVIKSNSDITLPKLQDDYADTYVRGVRYRVRTVEIP 123 GL + D+ A IT+R G+ + ++ LP+L V +YR T +P Sbjct 61 GL--FLGALGDKGAFAITIRSADGDTVLVSTPTQLPELDPGQQTVEVGDTKYRAYTATVP 118 Query 124 GPEPTSVAVGATYDATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQLAEQT 183 T +++ Y T+ R+V L+ AI AA+ WL AVRP L T Sbjct 119 -LLGTRISLAVPYAEAQDVTSEQQRQVALVGVLAIAAASGLGWLFGGRAVRPLVDL---T 174 Query 184 RSIDAGDEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSHELR 243 I + G EA E+A A ML+ + Q+ T ALA+ARDFAAVS+HELR Sbjct 175 GRIVRREPKLTPTTSGVREADELASAAESMLRDVAEAQDATTAALATARDFAAVSAHELR 234 Query 244 TPLTAMRTNLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLSALERLAQGELSTSDDHVP 303 TPLTAMRT+LEVL+TLDL +Q+ E+L D+ R+Q R+E+TLS LERLA+GELST D V Sbjct 235 TPLTAMRTDLEVLTTLDLTPEQQHEILRDLARSQGRVESTLSDLERLARGELSTDKDFVD 294 Query 304 VDITDLLDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGATLV 363 D+ D+ D AA +A R P L V++ +P + G+P GLRL +DNAI NAV+HGGAT V Sbjct 295 CDLVDISDLAAEEAMRHNPGLQVTVDATP-VTVRGMPGGLRLTLDNAIKNAVRHGGATAV 353 Query 364 QLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQLHG 423 ++ ++ + +DDNGSGVPE ER VVFERF RGS A+ SGSGLGLALVAQQA LH Sbjct 354 TITLRAADGITTVVVDDNGSGVPETERAVVFERFHRGSNATKSGSGLGLALVAQQAALHN 413 Query 424 GTASLENSPLGGARLVLRL 442 G+A E SPLGGARLV+ L Sbjct 414 GSARFEVSPLGGARLVVEL 432 >gi|226364470|ref|YP_002782252.1| two-component histidine kinase [Rhodococcus opacus B4] gi|226242959|dbj|BAH53307.1| two-component histidine kinase [Rhodococcus opacus B4] Length=446 Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 202/439 (47%), Positives = 266/439 (61%), Gaps = 11/439 (2%) Query 8 FARTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAAGFAIPFVPR- 66 R+ SLRTRV ATA+GA I V+ +G +V + I + +LDRRL+ A+ +P Sbjct 1 MKRSFSLRTRVAAATALGATIIVVALGILVSLAINRNNLSQLDRRLETASDVLVPNAATA 60 Query 67 GLDEIPRSPNDQDAL-ITVRR--GNVIKSNSDITLPKLQDDYADTYVRGVRYRVRTVEIP 123 GL + D+ A IT+R G+ + ++ LP+L V RYR T +P Sbjct 61 GL--FLGALGDKGAFAITIRSADGDTVLVSTPTQLPELDPGTQTVEVGDTRYRAYTATVP 118 Query 124 GPEPTSVAVGATYDATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQLAEQT 183 T +++ Y T+ R+V L+ A+ AA+ WL AVRP L T Sbjct 119 -LLGTRISLAVPYAEAQDVTSEQQRQVALVGVLAVAAASGLGWLFGGRAVRPLVDL---T 174 Query 184 RSIDAGDEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSHELR 243 I + G EA E+A A ML+ + Q+ T ALA+ARDFAAVS+HELR Sbjct 175 GRIVRREPKLTPTTSGVREADELASAAESMLRDVAEAQDATTAALATARDFAAVSAHELR 234 Query 244 TPLTAMRTNLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLSALERLAQGELSTSDDHVP 303 TPLTAMRT+LEVL+TLDL +Q+ E+ D+ R+Q R+E+TLS LERLA+GELST D V Sbjct 235 TPLTAMRTDLEVLATLDLTPEQQHEIFRDLARSQDRVESTLSDLERLARGELSTDKDFVD 294 Query 304 VDITDLLDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGATLV 363 D+ D+ D AA +A R P L V++ +P + G+P GLRL +DNAI NAV+HGGAT V Sbjct 295 CDLVDISDLAAEEAMRHNPGLQVTVDAAP-VTVRGMPGGLRLTLDNAIKNAVRHGGATAV 353 Query 364 QLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQLHG 423 ++ ++ + +DDNGSGVPE ER VVFERF RGS A+ SGSGLGLALVAQQA LH Sbjct 354 TITLRAADGITTVVVDDNGSGVPEAERSVVFERFHRGSNATKSGSGLGLALVAQQAALHN 413 Query 424 GTASLENSPLGGARLVLRL 442 G+A E SPLGGARLV+ L Sbjct 414 GSARFEVSPLGGARLVVEL 432 >gi|54022630|ref|YP_116872.1| putative two-component system sensor kinase [Nocardia farcinica IFM 10152] gi|54014138|dbj|BAD55508.1| putative two-component system sensor kinase [Nocardia farcinica IFM 10152] Length=467 Score = 313 bits (802), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 194/373 (53%), Positives = 243/373 (66%), Gaps = 4/373 (1%) Query 77 DQDALITVRRGNVIKSNSDITLPKLQDDYADTYVRGVRYRVRTVEIPGPEPTSVAVGATY 136 + D +TVR G + ++S + LP L V G +YRV T P +V++G Sbjct 79 NDDMAVTVRDGGAVVASSPVRLPDLPTGSRTVTVSGTQYRVLTTTENQPAGRTVSLGIPA 138 Query 137 DATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQLAEQT--RSIDAGDEA-P 193 D T R VL A+ AA WLLA AVRP L EQ RS D+A P Sbjct 139 DEAARVTAEQQRWVLGGALLAVAAAGALGWLLAGRAVRPIVDLTEQVGARSAFGADDARP 198 Query 194 RVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSHELRTPLTAMRTNL 253 V+ G E+ ++AEA+ ML R+ Q T ALA+ARDFAAVS+HELRTPLTAMRT+L Sbjct 199 PVDGSGVRESEQLAEAVNTMLARVDQAQAETAAALATARDFAAVSAHELRTPLTAMRTDL 258 Query 254 EVLSTLDLPDDQRKEVLNDVIRTQSRIEATLSALERLAQGELSTSDDHVPVDITDLLDRA 313 EVL TLDL ++QR E+L D+ R+Q R+E+TL+ALERLA G+L+ + DHV D+ +L D+A Sbjct 259 EVLRTLDLNEEQRAEILADLQRSQGRVESTLAALERLATGDLTHARDHVDTDVGELCDQA 318 Query 314 AHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGATLVQLSAV-SSRA 372 AHDA R +P L V + + GLPAGLRLAVDNA+AN+VKHGGAT +SA + Sbjct 319 AHDAMRHFPGLTVRIDTDADLVTRGLPAGLRLAVDNALANSVKHGGATEAVVSAHRGADG 378 Query 373 GVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQLHGGTASLENSP 432 G+ IA+DDNG G+P ER++VF RF RGS AS GSGLGLALVAQQAQLHGG A ++SP Sbjct 379 GIVIAVDDNGRGIPTDERELVFRRFFRGSQASKGGSGLGLALVAQQAQLHGGRAYFDDSP 438 Query 433 LGGARLVLRLPGP 445 LGGARLVL LP P Sbjct 439 LGGARLVLELPQP 451 >gi|73535712|pdb|1YS3|A Chain A, Crystal Structure Of The Atp Binding Domain Of Prrb From Mycobacterium Tuberculosis gi|73535713|pdb|1YS3|B Chain B, Crystal Structure Of The Atp Binding Domain Of Prrb From Mycobacterium Tuberculosis gi|73535714|pdb|1YS3|C Chain C, Crystal Structure Of The Atp Binding Domain Of Prrb From Mycobacterium Tuberculosis gi|73535716|pdb|1YSR|A Chain A, Crystal Structure Of Atp Binding Domain Of Prrb From Mycobacterium Tuberculosis gi|73535717|pdb|1YSR|B Chain B, Crystal Structure Of Atp Binding Domain Of Prrb From Mycobacterium Tuberculosis gi|73535718|pdb|1YSR|C Chain C, Crystal Structure Of Atp Binding Domain Of Prrb From Mycobacterium Tuberculosis Length=150 Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 150/150 (100%), Positives = 150/150 (100%), Gaps = 0/150 (0%) Query 297 TSDDHVPVDITDLLDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVK 356 TSDDHVPVDITDLLDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVK Sbjct 1 TSDDHVPVDITDLLDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVK 60 Query 357 HGGATLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVA 416 HGGATLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVA Sbjct 61 HGGATLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVA 120 Query 417 QQAQLHGGTASLENSPLGGARLVLRLPGPS 446 QQAQLHGGTASLENSPLGGARLVLRLPGPS Sbjct 121 QQAQLHGGTASLENSPLGGARLVLRLPGPS 150 >gi|296395435|ref|YP_003660319.1| integral membrane sensor signal transduction histidine kinase [Segniliparus rotundus DSM 44985] gi|296182582|gb|ADG99488.1| integral membrane sensor signal transduction histidine kinase [Segniliparus rotundus DSM 44985] Length=511 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 201/452 (45%), Positives = 266/452 (59%), Gaps = 23/452 (5%) Query 3 ILSRIFARTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAAGFAIP 62 +LSR R+PSLR +V +++ IG V +V +W+ IT+ + D RL Sbjct 57 LLSR--RRSPSLRAQVALSSGIGTFFIVTVVAIPLWMLITDFNFNQADARLQRLTTVVQG 114 Query 63 FVPRGLDEIPRSPNDQDALITVRRGNVIKSNSDITLPKL-QDDYADTYVRGVRYRVRTVE 121 V R R D T+R + S T P L + G YRV TV Sbjct 115 PVSR------RETPDAGLDFTIRTSGLSFSRG-ATAPDLPAGSLVTAQIDGRLYRVYTV- 166 Query 122 IPGP-EPTSVAVGATYDATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQLA 180 I GP + +AV + T+ + HR ++++ A+ A V WLL FAVRP ++LA Sbjct 167 IFGPTDQNKLAVAELLEPTLKHIDEQHRVIVVVGFAAVVAGGVLGWLLGGFAVRPLRELA 226 Query 181 EQTRSIDAGD---EAPRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAV 237 TR + + E P V GA E IAEAMR ML RI E+ + ALA+ARDFA + Sbjct 227 TATRQVTSSGGVGEPPHVT--GAREVEAIAEAMRAMLARIGEERTTSDAALATARDFALL 284 Query 238 SSHELRTPLTAMRTNLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLSALERLAQGELST 297 S+HELRTPLTAMRTNLEVL+ +LP D R+E++ DV+RTQ R+E TLSALE LA EL+T Sbjct 285 SAHELRTPLTAMRTNLEVLNIHNLPQDDRQEIVGDVLRTQRRVEETLSALEHLAAHELNT 344 Query 298 SDDHVPVDITDLLDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKH 357 DD+ V++ DLLD+A DAAR PD+ + LV + + AGLRLAVDNAI NA++H Sbjct 345 DDDYADVNLNDLLDQAVVDAARANPDVAIRLVANEPLHARAVRAGLRLAVDNAITNAIRH 404 Query 358 GGATLVQLSAVSSRA------GVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLG 411 G AT V ++ ++ + I IDDNG GVPE +R +VF RF RG+TA GSGLG Sbjct 405 GNATRVHVTLATAEHHPDDAPAITITIDDNGCGVPEKQRDIVFRRFVRGTTAKGPGSGLG 464 Query 412 LALVAQQAQLHGGTASLENSPLGGARLVLRLP 443 +AL+AQQAQ+H G A+L SP GGARL + +P Sbjct 465 MALIAQQAQIHHGNATLTTSPQGGARLTITIP 496 >gi|317509521|ref|ZP_07967127.1| hsp90-like protein [Segniliparus rugosus ATCC BAA-974] gi|316252183|gb|EFV11647.1| hsp90-like protein [Segniliparus rugosus ATCC BAA-974] Length=559 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 184/406 (46%), Positives = 249/406 (62%), Gaps = 29/406 (7%) Query 67 GLDEIPRS---PNDQDALITVRRGNV-IKSNSDITLPKLQD-DYADTYVRGVRYRVRTVE 121 G D I R ++ + L T R+ N S++DITLP ++ DY + G ++ + TV+ Sbjct 1 GADTIKRGGFPDSNPNYLYTYRKVNYPAASSNDITLPDSKEGDYTTLSIAGHQFLMYTVQ 60 Query 122 IP----GPEPTSVAVGATYDATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFK 177 G +AV D T T + ++ ++++ A+ A V WLL FAVRP + Sbjct 61 FATQSWGTPDQKLAVATPLDTTQKHTEDEYKLIVVVGFAAVVAGGVLGWLLGGFAVRPLR 120 Query 178 QLAEQTRSIDA---------GD----EAPRVEVH--GASEAIEIAEAMRGMLQRIWNEQN 222 +LA TR I + GD E R +H GA E IAEAMR ML RI E+ Sbjct 121 ELASATRQIASSGRGEGGTPGDPSQPEKWRQYLHVTGAREVEAIAEAMRAMLDRIGEERA 180 Query 223 RTKEALASARDFAAVSSHELRTPLTAMRTNLEVLSTLDLPDDQRKEVLNDVIRTQSRIEA 282 + ALA+ARDFA +S+HELRTPLTAMRTNLE+L+ +LP + R+E++ DV+RTQ R+E Sbjct 181 TSDAALATARDFALLSAHELRTPLTAMRTNLEILTAHELPQNDRQEIVGDVLRTQRRVEE 240 Query 283 TLSALERLAQGELSTSDDHVPVDITDLLDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAG 342 TL+ALE LA EL+T DD+ V++ DLLD+A DAAR PD+ V L S + AG Sbjct 241 TLTALEHLAAHELNTDDDYADVNLNDLLDQAVVDAARANPDVTVRLTASEPLTARAVRAG 300 Query 343 LRLAVDNAIANAVKHGGATLVQLSAVSSR-----AGVEIAIDDNGSGVPEGERQVVFERF 397 LRLAVDNAI NA++HG ATLVQ++ ++ + I IDDNG GVPE +R+++F RF Sbjct 301 LRLAVDNAITNAIRHGHATLVQVTLTATDHLNQPPTIAITIDDNGCGVPEKQREIIFRRF 360 Query 398 SRGSTASHSGSGLGLALVAQQAQLHGGTASLENSPLGGARLVLRLP 443 RG+TA GSGLG+AL+AQQA +H GTA L SP GARL + +P Sbjct 361 VRGTTAKGPGSGLGMALIAQQAAIHHGTAQLTTSPQNGARLTITIP 406 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/115 (32%), Positives = 60/115 (53%), Gaps = 6/115 (5%) Query 10 RTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAAGFAIPFVPRGLD 69 RTPSLR RV + A+G A+ + T +W + +E+L++ L + A + RG Sbjct 439 RTPSLRGRVAGSAAVGVALIATAIATSLWEPLERFNQEQLNQELAKTASIGADTIKRG-- 496 Query 70 EIPRSPNDQDALITVRRGNV-IKSNSDITLPKLQD-DYADTYVRGVRYRVRTVEI 122 P S + + L T R+ N S++DITLP ++ DY + G ++ + TV+ Sbjct 497 GFPDS--NPNYLYTYRKVNYPAASSNDITLPDSKEGDYTTLSIAGHQFLMYTVQF 549 >gi|289749423|ref|ZP_06508801.1| two component system sensor histidine kinase prrB [Mycobacterium tuberculosis T92] gi|289690010|gb|EFD57439.1| two component system sensor histidine kinase prrB [Mycobacterium tuberculosis T92] Length=145 Score = 285 bits (730), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 144/145 (99%), Positives = 145/145 (100%), Gaps = 0/145 (0%) Query 302 VPVDITDLLDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGAT 361 +PVDITDLLDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGAT Sbjct 1 MPVDITDLLDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGAT 60 Query 362 LVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQL 421 LVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQL Sbjct 61 LVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQL 120 Query 422 HGGTASLENSPLGGARLVLRLPGPS 446 HGGTASLENSPLGGARLVLRLPGPS Sbjct 121 HGGTASLENSPLGGARLVLRLPGPS 145 >gi|325676261|ref|ZP_08155940.1| sensor histidine kinase [Rhodococcus equi ATCC 33707] gi|325552822|gb|EGD22505.1| sensor histidine kinase [Rhodococcus equi ATCC 33707] Length=430 Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 168/348 (49%), Positives = 225/348 (65%), Gaps = 5/348 (1%) Query 99 PKLQDDYADTYVRGVRYRVRTVEIPGPEPTSVAVGATYDATVAETNNLHRRVLLICTFAI 158 P + + T + G R + V I G +AV DA +V + AI Sbjct 82 PAVSEPVRTTTIDGAAVRAKDVTIAGTLGEVIAVSVPEDALSRAIREQQWQVAGVAVAAI 141 Query 159 GAAAVFAWLLAAFAVRPFKQLAEQTRSIDAGDEAPRV--EVHGASEAIEIAEAMRGMLQR 216 AA WLLA AVRP ++LA T ++ GDE P ++ GA EA E+ EA+R ML R Sbjct 142 AVAAGLGWLLAGRAVRPLQRLAAATHTV--GDELPASLPDIRGAREAEELGEAIRHMLDR 199 Query 217 IWNEQNRTKEALASARDFAAVSSHELRTPLTAMRTNLEVLSTLDLPDDQRKEVLNDVIRT 276 I Q+RT++AL +ARDFAAVS+HELRTPLT+MRT+LEVL+T+ L + QR E+L ++ T Sbjct 200 IGKAQSRTQDALGAARDFAAVSAHELRTPLTSMRTDLEVLATMPLTETQRAEILRELRST 259 Query 277 QSRIEATLSALERLAQGELSTSDDHVPVDITDLLDRAAHDAARIYPDLDVSLV-PSPTCI 335 + +IE+TL+ LE LA GELS DH VD+ +L DR +++R PD+DV L P+ + Sbjct 260 ERQIESTLTDLESLAVGELSDPADHEDVDLVELADRCVQESSRRLPDVDVRLTAPASSSP 319 Query 336 IVGLPAGLRLAVDNAIANAVKHGGATLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFE 395 + GLP+GLR +DNA+ NAV+HG A ++++ ++ + I +DDNG GV E ER VFE Sbjct 320 MRGLPSGLRSVLDNAVTNAVRHGRADRIEITVAATAHAITITVDDNGVGVREDERTAVFE 379 Query 396 RFSRGSTASHSGSGLGLALVAQQAQLHGGTASLENSPLGGARLVLRLP 443 RF+RG++A GSGLGLALVAQQA LHGGTA L +SPLGGARL L LP Sbjct 380 RFARGASAHPVGSGLGLALVAQQAALHGGTAELTDSPLGGARLRLDLP 427 >gi|229488612|ref|ZP_04382478.1| sensor-type histidine kinase PrrB [Rhodococcus erythropolis SK121] gi|229324116|gb|EEN89871.1| sensor-type histidine kinase PrrB [Rhodococcus erythropolis SK121] Length=447 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 210/456 (47%), Positives = 266/456 (59%), Gaps = 33/456 (7%) Query 10 RTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEA-------AGFAIP 62 R SLRTRV A A+GA V+ +G VV + I + +LDRRL+ A A A P Sbjct 4 RRFSLRTRVAAAAALGATFIVIALGVVVALAIARNNLAQLDRRLETASTVIVANAATAGP 63 Query 63 FVPRGLDEIPRSPNDQDAL-ITVRRGN--VIKSNSDITLPKLQDDYADTYVRGVRYRVRT 119 F+ + D A +T+R +KS++ LP+L A V G +YR T Sbjct 64 FLG--------AFGDGGAFSVTIRSDTDGTVKSSTPTRLPELPVGSATVDVDGTKYRAYT 115 Query 120 VEIPGPEPTSVAVGATYDATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQL 179 E G V++ Y T + R+V A+ AAA WL AVRP L Sbjct 116 AEADGINAL-VSLAVPYAEARDITVDQQRQVAFFGVGAVAAAAALGWLFGGPAVRP---L 171 Query 180 AEQTRSIDAGDEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSS 239 E TR I D EV G EA E+A A ML + Q T ALA+ARDFA+ S+ Sbjct 172 VELTRRIARRDPDLATEVSGIREADELAAAAESMLSDVARAQAATNSALAAARDFASASA 231 Query 240 HELRTPLTAMRTNLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLSALERLAQGELSTSD 299 HELRTPLTAMRT++EVLS DL +QR+E+L D+ R Q R+E+TL LERLA+GELST++ Sbjct 232 HELRTPLTAMRTDIEVLSIHDLDHEQRREILTDLARAQGRVESTLRDLERLAKGELSTAE 291 Query 300 DHVPVDITDLLDRAAHDAARIYPDLDVSLV----PSPTCIIVGLPAGLRLAVDNAIANAV 355 D D+T++ D AA DA R +P LDV +V P P C I LP G+RL +DNAI NAV Sbjct 292 DFKDTDLTEVCDIAADDARRHHPGLDVGVVTVDSPLPYC-IRALPGGIRLILDNAITNAV 350 Query 356 KHGGATLVQLS---AVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGL 412 +HGGA+ V+++ S V I IDDNG G+P ER VFERF+RGSTA +GSGLGL Sbjct 351 RHGGASAVRITLARPADSPDTVTITIDDNGCGIPAEERSSVFERFTRGSTAGKTGSGLGL 410 Query 413 ALVAQQAQLHGGTASLENSPLGGARLVLRL---PGP 445 ALVAQQA LHGG + +SPLGGARL++ L PGP Sbjct 411 ALVAQQAALHGGRTTFHDSPLGGARLLVELRDQPGP 446 >gi|312138670|ref|YP_004006006.1| two component system sensor kinase [Rhodococcus equi 103S] gi|311888009|emb|CBH47321.1| putative two component system sensor kinase [Rhodococcus equi 103S] Length=347 Score = 283 bits (723), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 166/339 (49%), Positives = 222/339 (66%), Gaps = 5/339 (1%) Query 108 TYVRGVRYRVRTVEIPGPEPTSVAVGATYDATVAETNNLHRRVLLICTFAIGAAAVFAWL 167 T + G R + V I G +AV DA +V + AI AA WL Sbjct 8 TTIDGAAVRAKDVTIAGTLGEVIAVSVPEDALSRAIWEQQWQVAGVAVAAIAVAAGLGWL 67 Query 168 LAAFAVRPFKQLAEQTRSIDAGDEAPRV--EVHGASEAIEIAEAMRGMLQRIWNEQNRTK 225 LA AVRP ++LA T ++ GDE P ++ GA EA E+ EA+R ML RI Q+RT+ Sbjct 68 LAGRAVRPLQRLAAATHTV--GDELPASLPDIRGAREAEELGEAIRHMLDRIGKAQSRTQ 125 Query 226 EALASARDFAAVSSHELRTPLTAMRTNLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLS 285 +AL +ARDFAAVS+HELRTPLT+MRT+LEVL+T+ L + QR E+L ++ T+ +IE+TL+ Sbjct 126 DALGAARDFAAVSAHELRTPLTSMRTDLEVLATMPLTETQRAEILRELRSTERQIESTLT 185 Query 286 ALERLAQGELSTSDDHVPVDITDLLDRAAHDAARIYPDLDVSLV-PSPTCIIVGLPAGLR 344 LE LA GELS DH VD+ +L DR +++R PD+DV L P+ + + GLP+GLR Sbjct 186 DLESLAVGELSDPADHEDVDLVELADRCVQESSRRLPDVDVRLTAPASSSPMRGLPSGLR 245 Query 345 LAVDNAIANAVKHGGATLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTAS 404 +DNA+ NA++HG A ++++ ++ + I +DDNG GV E ER VFERF+RG++A Sbjct 246 SVLDNAVTNAIRHGRADRIEITVAATAHAITITVDDNGVGVREDERTAVFERFARGASAH 305 Query 405 HSGSGLGLALVAQQAQLHGGTASLENSPLGGARLVLRLP 443 GSGLGLALVAQQA LHGGTA L +SPLGGARL L LP Sbjct 306 PVGSGLGLALVAQQAALHGGTAELTDSPLGGARLRLDLP 344 >gi|325674556|ref|ZP_08154243.1| sensor-type histidine kinase PrrB [Rhodococcus equi ATCC 33707] gi|325554142|gb|EGD23817.1| sensor-type histidine kinase PrrB [Rhodococcus equi ATCC 33707] Length=239 Score = 279 bits (713), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 146/237 (62%), Positives = 181/237 (77%), Gaps = 1/237 (0%) Query 207 AEAMRGMLQRIWNEQNRTKEALASARDFAAVSSHELRTPLTAMRTNLEVLSTLDLPDDQR 266 A A MLQ + + Q RT AL +ARDFAA S+HELRTPLTAMRT+LEVL+TLDL D+QR Sbjct 1 AAAAGAMLQDVSDAQERTAAALDTARDFAAASAHELRTPLTAMRTDLEVLTTLDLSDEQR 60 Query 267 KEVLNDVIRTQSRIEATLSALERLAQGELSTSDDHVPVDITDLLDRAAHDAARIYPDLDV 326 E+L D+ RTQ R+EATL+ALERLA GELS+ DHV +D+T+L D AA DA R+ PDL V Sbjct 61 AEILADLARTQGRLEATLTALERLASGELSSEKDHVDLDLTELCDLAAEDAQRLRPDLTV 120 Query 327 SLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGATLVQLSAVSSRAG-VEIAIDDNGSGV 385 ++ P ++ GLP GLRL++DNAI+NAV+HGGA V + A + G V + +DD+G+G+ Sbjct 121 TVDAPPGLVVRGLPVGLRLSIDNAISNAVRHGGARHVSIGAHRNDDGTVTVTVDDDGTGI 180 Query 386 PEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQLHGGTASLENSPLGGARLVLRL 442 P ER VFERF RGS+A+ GSGLGLALVAQQA LHGGTA L +SPLGGARLV+ L Sbjct 181 PHEERVEVFERFRRGSSAAKGGSGLGLALVAQQAGLHGGTAHLADSPLGGARLVVTL 237 >gi|226308072|ref|YP_002768032.1| two-component histidine kinase PrrB [Rhodococcus erythropolis PR4] gi|226187189|dbj|BAH35293.1| two-component histidine kinase PrrB [Rhodococcus erythropolis PR4] Length=447 Score = 276 bits (706), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 206/453 (46%), Positives = 262/453 (58%), Gaps = 33/453 (7%) Query 13 SLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEA-------AGFAIPFVP 65 SLRTRV A A+GA V+ +G VV + I + +LDRRL+ A A A PF+ Sbjct 7 SLRTRVAAAAALGATFIVIALGVVVALAIARNNLAQLDRRLETASTVIVANAATAGPFLG 66 Query 66 RGLDEIPRSPNDQDAL-ITVRRGN--VIKSNSDITLPKLQDDYADTYVRGVRYRVRTVEI 122 + D A +T+R +KS++ LP+L A V G +YR T E Sbjct 67 --------AFGDGGAFSVTIRSDTDGTVKSSTPTRLPELPVGSATVDVDGTKYRAYTAEA 118 Query 123 PGPEPTSVAVGATYDATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQLAEQ 182 G V++ Y T + R+V A+ AAA WL AVRP L E Sbjct 119 DGINAL-VSLAVPYAEARDITVDQQRQVAFFGVGAVAAAAALGWLFGGPAVRP---LVEL 174 Query 183 TRSIDAGDEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSHEL 242 TR I D EV G EA E+A A ML + Q T ALA+ARDFA+ S+HEL Sbjct 175 TRRIARRDPDLATEVSGIREADELAAAAESMLSDVARAQAATNSALAAARDFASASAHEL 234 Query 243 RTPLTAMRTNLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLSALERLAQGELSTSDDHV 302 RTPLTAMRT++EVLS DL +QR+E+L D+ R Q R+E+TL LERLA+GELST++D Sbjct 235 RTPLTAMRTDIEVLSIHDLDHEQRREILTDLARAQGRVESTLRDLERLAKGELSTAEDFK 294 Query 303 PVDITDLLDRAAHDAARIYP----DLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHG 358 D+T++ D AA DA R +P + P P C I LP G+RL +DNAI NAV+HG Sbjct 295 DTDLTEVCDIAADDARRHHPSVDVSVVTVDSPLPYC-IRALPGGIRLILDNAITNAVRHG 353 Query 359 GATLVQLS---AVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALV 415 GA+ V+++ V S V I IDDNG G+P ER VFERF+RGSTA +GSGLGLALV Sbjct 354 GASTVRITLARPVDSPDTVTITIDDNGCGIPAEERSSVFERFTRGSTAGKTGSGLGLALV 413 Query 416 AQQAQLHGGTASLENSPLGGARLVLRL---PGP 445 AQQA LHGG + +SPLGGARL++ L PGP Sbjct 414 AQQAALHGGRTTFHDSPLGGARLLVELRDQPGP 446 >gi|126432769|ref|YP_001068460.1| integral membrane sensor signal transduction histidine kinase [Mycobacterium sp. JLS] gi|126232569|gb|ABN95969.1| integral membrane sensor signal transduction histidine kinase [Mycobacterium sp. JLS] Length=445 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 192/442 (44%), Positives = 259/442 (59%), Gaps = 18/442 (4%) Query 4 LSRIFARTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAAGFAIPF 63 L R+F R+ SLRTRV VA+A A+ V + V + ++ +LDRRLD ++ Sbjct 3 LPRLF-RSTSLRTRVAVASAAAASAVVAAFTILTSVVLASNDDAQLDRRLDSIVDASM-- 59 Query 64 VPRGLDEIPRSPNDQDALITVR---RGNVIKSNSDITLPKLQDDYADTYVRGVRYRVRTV 120 P L + PR + L T R G V+ LPKL V GV YRVRT+ Sbjct 60 YPEQLQD-PR----RGVLTTGRDRSTGQVVFQRG-FQLPKLPPGTETVEVNGVDYRVRTL 113 Query 121 EIPGPEPTSVAVGATYDATVAETNNLHRRVLL-ICTFAIGAAAVFAWLLAAFAVRPFKQL 179 + V++G D+ + + VL+ + T I A WLLA A+RP ++L Sbjct 114 VVDQEGGVLVSIGIRADSILLSRGRIPEYVLVGLVTVLI--AGGLGWLLAGPAIRPLRKL 171 Query 180 AEQTRSIDAG-DEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVS 238 EQT + G DE P EV GA EA E++ AM ML+R+ Q T +L +A+DFAA + Sbjct 172 TEQTSKLSTGTDEMP--EVRGAREAEELSAAMSAMLRRLAAAQQATTNSLQAAQDFAANA 229 Query 239 SHELRTPLTAMRTNLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLSALERLAQGELSTS 298 +HELRTPLTAMR +L+ L DLP+D+R EV+ D+ R Q R+EA ++AL +LA G+L+ + Sbjct 230 AHELRTPLTAMRADLDTLRIHDLPEDERAEVVADLSRAQRRVEAIITALGQLASGQLAQA 289 Query 299 DDHVPVDITDLLDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHG 358 D P+DITD LDR A + R P +D+ + + GLP GLRLAVDN + NA+ HG Sbjct 290 ADREPIDITDTLDRVARENMRSAPQIDIQVDAEDLGTVWGLPDGLRLAVDNLVRNAITHG 349 Query 359 GATLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQ 418 GA V L+A + + I +DD+G G+P E + V RF RGSTA+ GSGLGLALVAQQ Sbjct 350 GAGRVVLTARRTDGWLTIVVDDDGRGLPAEEHETVLGRFRRGSTAAPGGSGLGLALVAQQ 409 Query 419 AQLHGGTASLENSPLGGARLVL 440 A+LHGGT L +SPLGG R L Sbjct 410 AELHGGTIELADSPLGGLRATL 431 >gi|108797146|ref|YP_637343.1| periplasmic sensor signal transduction histidine kinase [Mycobacterium sp. MCS] gi|108767565|gb|ABG06287.1| periplasmic sensor signal transduction histidine kinase [Mycobacterium sp. MCS] Length=445 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 191/442 (44%), Positives = 260/442 (59%), Gaps = 18/442 (4%) Query 4 LSRIFARTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAAGFAIPF 63 L R+F R+ SLRTRV VA+A A+ V + V + ++ +LDRRLD ++ Sbjct 3 LPRLF-RSTSLRTRVAVASAAAASAVVAAFTILTSVVLASNDDAQLDRRLDSIVDASM-- 59 Query 64 VPRGLDEIPRSPNDQDALITVR---RGNVIKSNSDITLPKLQDDYADTYVRGVRYRVRTV 120 P L + PR + L T R G V+ LPKL V GV YRVRT+ Sbjct 60 YPEQLQD-PR----RGVLTTGRDRSTGQVVFQRG-FQLPKLPPGTETVEVNGVDYRVRTL 113 Query 121 EIPGPEPTSVAVGATYDATVAETNNLHRRVLL-ICTFAIGAAAVFAWLLAAFAVRPFKQL 179 + V++G D+ + + VL+ + T I A W+LA A+RP ++L Sbjct 114 VVDQEGGVLVSIGIRADSILLSRGRIPEYVLVGLVTVLI--AGGLGWVLAGPAIRPLRKL 171 Query 180 AEQTRSIDAG-DEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVS 238 EQT + G DE P EV GA EA E++ AM ML+R+ Q T +L +A+DFAA + Sbjct 172 TEQTSKLSTGTDEMP--EVRGAREAEELSAAMSAMLRRLAAAQQATTNSLQAAQDFAANA 229 Query 239 SHELRTPLTAMRTNLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLSALERLAQGELSTS 298 +HELRTPLTAMR +L+ L DLP+D+R EV+ D+ R Q R+EA ++AL +LA G+L+ + Sbjct 230 AHELRTPLTAMRADLDTLRIHDLPEDERAEVVADLSRAQRRVEAIITALGQLASGQLAQA 289 Query 299 DDHVPVDITDLLDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHG 358 D P+DITD LDR A + R P +D+ + + GLP GLRLAVDN + NA+ HG Sbjct 290 ADREPIDITDTLDRVARENMRSAPQVDIQVDAEDLGTVWGLPDGLRLAVDNLVRNAITHG 349 Query 359 GATLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQ 418 GA V L+A + + I +DD+G G+P E ++V RF RGSTA+ GSGLGLALVAQQ Sbjct 350 GAGRVVLTARRTDGWLTIVVDDDGRGLPAEEHEMVLGRFRRGSTAAPGGSGLGLALVAQQ 409 Query 419 AQLHGGTASLENSPLGGARLVL 440 A+LHGGT L +SPLGG R L Sbjct 410 AELHGGTIELADSPLGGLRATL 431 Lambda K H 0.318 0.133 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 921737184942 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40