BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0903c
Length=236
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608043|ref|NP_215418.1| two component response transcriptio... 458 2e-127
gi|167967698|ref|ZP_02549975.1| two component system response tr... 452 3e-125
gi|289568870|ref|ZP_06449097.1| two component system transcripti... 434 4e-120
gi|296169659|ref|ZP_06851277.1| DNA-binding response regulator [... 426 2e-117
gi|183984600|ref|YP_001852891.1| two-component response transcri... 425 2e-117
gi|254773908|ref|ZP_05215424.1| two component response transcrip... 425 3e-117
gi|254822956|ref|ZP_05227957.1| two component response transcrip... 424 5e-117
gi|240172200|ref|ZP_04750859.1| two component response transcrip... 421 4e-116
gi|118616126|ref|YP_904458.1| two component response transcripti... 421 5e-116
gi|41406932|ref|NP_959768.1| hypothetical protein MAP0834c [Myco... 417 5e-115
gi|15828139|ref|NP_302402.1| two-component response regulator [M... 414 8e-114
gi|108801411|ref|YP_641608.1| two component transcriptional regu... 409 2e-112
gi|126437395|ref|YP_001073086.1| two component transcriptional r... 408 4e-112
gi|118468513|ref|YP_889895.1| DNA-binding response regulator Prr... 405 2e-111
gi|120405958|ref|YP_955787.1| two component transcriptional regu... 405 4e-111
gi|145222334|ref|YP_001133012.1| two component transcriptional r... 401 4e-110
gi|169628053|ref|YP_001701702.1| transcriptional regulatory prot... 394 8e-108
gi|333989463|ref|YP_004522077.1| two-component response transcri... 384 8e-105
gi|226308071|ref|YP_002768031.1| two-component response regulato... 325 3e-87
gi|229492138|ref|ZP_04385947.1| DNA-binding response regulator P... 313 1e-83
gi|226303939|ref|YP_002763897.1| OmpR family two-component respo... 313 1e-83
gi|325676260|ref|ZP_08155939.1| DNA-binding response regulator [... 311 7e-83
gi|54022631|ref|YP_116873.1| putative two-component system respo... 300 1e-79
gi|226364471|ref|YP_002782253.1| OmpR family two-component respo... 296 2e-78
gi|333918531|ref|YP_004492112.1| two component response transcri... 294 7e-78
gi|111021968|ref|YP_704940.1| response regulator, two-component ... 294 8e-78
gi|312138449|ref|YP_004005785.1| two component system response r... 285 4e-75
gi|325676168|ref|ZP_08155849.1| DNA-binding response regulator [... 284 8e-75
gi|296395434|ref|YP_003660318.1| transcriptional regulator [Segn... 281 5e-74
gi|317509412|ref|ZP_07967031.1| response regulator receiver doma... 279 2e-73
gi|108797145|ref|YP_637342.1| two component transcriptional regu... 276 1e-72
gi|126432768|ref|YP_001068459.1| two component transcriptional r... 276 2e-72
gi|118470690|ref|YP_884659.1| two component response transcripti... 276 2e-72
gi|120401218|ref|YP_951047.1| two component transcriptional regu... 268 4e-70
gi|145221065|ref|YP_001131743.1| two component transcriptional r... 268 5e-70
gi|169629014|ref|YP_001702663.1| putative transcriptional regula... 257 1e-66
gi|240172708|ref|ZP_04751367.1| transcriptional regulatory prote... 243 2e-62
gi|118473019|ref|YP_889726.1| DNA-binding response regulator [My... 226 2e-57
gi|336115936|ref|YP_004570702.1| two-component system response r... 223 1e-56
gi|296140967|ref|YP_003648210.1| winged helix family two compone... 223 2e-56
gi|297625282|ref|YP_003687045.1| two-component response regulato... 221 7e-56
gi|269926213|ref|YP_003322836.1| two component transcriptional r... 221 9e-56
gi|295837513|ref|ZP_06824446.1| DNA-binding response regulator [... 219 3e-55
gi|333025498|ref|ZP_08453562.1| putative two-component system re... 218 8e-55
gi|108801265|ref|YP_641462.1| two component transcriptional regu... 217 9e-55
gi|29830590|ref|NP_825224.1| two-component system response regul... 217 1e-54
gi|158317067|ref|YP_001509575.1| two component transcriptional r... 217 1e-54
gi|289770266|ref|ZP_06529644.1| two-component system response re... 217 1e-54
gi|302520777|ref|ZP_07273119.1| phosphate regulon transcriptiona... 217 1e-54
gi|21222554|ref|NP_628333.1| two-component systen response regul... 217 1e-54
>gi|15608043|ref|NP_215418.1| two component response transcriptional regulatory protein PRRA
[Mycobacterium tuberculosis H37Rv]
gi|15840322|ref|NP_335359.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
gi|31792091|ref|NP_854584.1| two component response transcriptional regulatory protein PRRA
[Mycobacterium bovis AF2122/97]
77 more sequence titles
Length=236
Score = 458 bits (1179), Expect = 2e-127, Method: Compositional matrix adjust.
Identities = 236/236 (100%), Positives = 236/236 (100%), Gaps = 0/236 (0%)
Query 1 MGGMDTGVTSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVL 60
MGGMDTGVTSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVL
Sbjct 1 MGGMDTGVTSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVL 60
Query 61 DINMPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVA 120
DINMPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVA
Sbjct 61 DINMPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVA 120
Query 121 RVKALLRRRGSTATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTA 180
RVKALLRRRGSTATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTA
Sbjct 121 RVKALLRRRGSTATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTA 180
Query 181 VLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLRMQ 236
VLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLRMQ
Sbjct 181 VLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLRMQ 236
>gi|167967698|ref|ZP_02549975.1| two component system response transcriptional regulatory protein
prrA [Mycobacterium tuberculosis H37Ra]
gi|61229967|sp|P0A5Z6.1|PRRA_MYCTU RecName: Full=Transcriptional regulatory protein prrA
gi|61229968|sp|P0A5Z7.1|PRRA_MYCBO RecName: Full=Transcriptional regulatory protein prrA
gi|90108539|pdb|1YS6|A Chain A, Crystal Structure Of The Response Regulatory Protein
Prra From Mycobacterium Tuberculosis
gi|90108540|pdb|1YS6|B Chain B, Crystal Structure Of The Response Regulatory Protein
Prra From Mycobacterium Tuberculosis
gi|90108541|pdb|1YS7|A Chain A, Crystal Structure Of The Response Regulator Protein
Prra Comlexed With Mg2+
gi|90108542|pdb|1YS7|B Chain B, Crystal Structure Of The Response Regulator Protein
Prra Comlexed With Mg2+
Length=233
Score = 452 bits (1162), Expect = 3e-125, Method: Compositional matrix adjust.
Identities = 233/233 (100%), Positives = 233/233 (100%), Gaps = 0/233 (0%)
Query 4 MDTGVTSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDIN 63
MDTGVTSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDIN
Sbjct 1 MDTGVTSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDIN 60
Query 64 MPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVK 123
MPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVK
Sbjct 61 MPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVK 120
Query 124 ALLRRRGSTATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLS 183
ALLRRRGSTATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLS
Sbjct 121 ALLRRRGSTATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLS 180
Query 184 RAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLRMQ 236
RAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLRMQ
Sbjct 181 RAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLRMQ 233
>gi|289568870|ref|ZP_06449097.1| two component system transcriptional regulator prrA [Mycobacterium
tuberculosis T17]
gi|289542624|gb|EFD46272.1| two component system transcriptional regulator prrA [Mycobacterium
tuberculosis T17]
Length=236
Score = 434 bits (1117), Expect = 4e-120, Method: Compositional matrix adjust.
Identities = 226/236 (96%), Positives = 227/236 (97%), Gaps = 0/236 (0%)
Query 1 MGGMDTGVTSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVL 60
MGGMDTGVT + SDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVL
Sbjct 1 MGGMDTGVTVELENCLIAHSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVL 60
Query 61 DINMPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVA 120
DINMPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVA
Sbjct 61 DINMPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVA 120
Query 121 RVKALLRRRGSTATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTA 180
RVKALLRRRGSTATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTA
Sbjct 121 RVKALLRRRGSTATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTA 180
Query 181 VLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLRMQ 236
VLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLRMQ
Sbjct 181 VLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLRMQ 236
>gi|296169659|ref|ZP_06851277.1| DNA-binding response regulator [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295895656|gb|EFG75352.1| DNA-binding response regulator [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=236
Score = 426 bits (1094), Expect = 2e-117, Method: Compositional matrix adjust.
Identities = 231/236 (98%), Positives = 233/236 (99%), Gaps = 0/236 (0%)
Query 1 MGGMDTGVTSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVL 60
MGGMDTG TSPRVLVVDDDSDVLASLERGLRLSGFEV+TAVDGAEALRSATE RPDAIVL
Sbjct 1 MGGMDTGGTSPRVLVVDDDSDVLASLERGLRLSGFEVSTAVDGAEALRSATETRPDAIVL 60
Query 61 DINMPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVA 120
DINMPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVA
Sbjct 61 DINMPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVA 120
Query 121 RVKALLRRRGSTATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTA 180
RVKALLRRRG+TATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTA
Sbjct 121 RVKALLRRRGATATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTA 180
Query 181 VLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLRMQ 236
VLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEA GGPRLLHTVRGVGFVLRMQ
Sbjct 181 VLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEANGGPRLLHTVRGVGFVLRMQ 236
>gi|183984600|ref|YP_001852891.1| two-component response transcriptional regulatory protein PrrA
[Mycobacterium marinum M]
gi|183177926|gb|ACC43036.1| two-component response transcriptional regulatory protein PrrA
[Mycobacterium marinum M]
Length=236
Score = 425 bits (1093), Expect = 2e-117, Method: Compositional matrix adjust.
Identities = 230/236 (98%), Positives = 232/236 (99%), Gaps = 0/236 (0%)
Query 1 MGGMDTGVTSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVL 60
MGGMDTG SPRVLVVDDDSDVLASLERGLRLSGFEV+TAVDGAEALRSATE RPDAIVL
Sbjct 1 MGGMDTGANSPRVLVVDDDSDVLASLERGLRLSGFEVSTAVDGAEALRSATETRPDAIVL 60
Query 61 DINMPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVA 120
DINMPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVA
Sbjct 61 DINMPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVA 120
Query 121 RVKALLRRRGSTATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTA 180
RVKALLRRRG+TATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTA
Sbjct 121 RVKALLRRRGATATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTA 180
Query 181 VLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLRMQ 236
VLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEA GGPRLLHTVRGVGFVLRMQ
Sbjct 181 VLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEANGGPRLLHTVRGVGFVLRMQ 236
>gi|254773908|ref|ZP_05215424.1| two component response transcriptional regulatory protein prra
[Mycobacterium avium subsp. avium ATCC 25291]
gi|342860509|ref|ZP_08717160.1| PrrA family transcriptional regulator [Mycobacterium colombiense
CECT 3035]
gi|342132164|gb|EGT85405.1| PrrA family transcriptional regulator [Mycobacterium colombiense
CECT 3035]
Length=223
Score = 425 bits (1092), Expect = 3e-117, Method: Compositional matrix adjust.
Identities = 218/223 (98%), Positives = 221/223 (99%), Gaps = 0/223 (0%)
Query 14 LVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVV 73
+VVDDDSDVLASLERGLRLSGFEV+TAVDGAEALRSATE RPDAIVLDINMPVLDGVSVV
Sbjct 1 MVVDDDSDVLASLERGLRLSGFEVSTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVV 60
Query 74 TALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTA 133
TALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRG+TA
Sbjct 61 TALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGATA 120
Query 134 TSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG 193
TSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG
Sbjct 121 TSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG 180
Query 194 YDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLRMQ 236
YDFAADTNVVDVFIGYLRRKLEA GGPRLLHTVRGVGFVLRMQ
Sbjct 181 YDFAADTNVVDVFIGYLRRKLEANGGPRLLHTVRGVGFVLRMQ 223
>gi|254822956|ref|ZP_05227957.1| two component response transcriptional regulatory protein prra
[Mycobacterium intracellulare ATCC 13950]
Length=223
Score = 424 bits (1090), Expect = 5e-117, Method: Compositional matrix adjust.
Identities = 218/223 (98%), Positives = 221/223 (99%), Gaps = 0/223 (0%)
Query 14 LVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVV 73
+VVDDDSDVLASLERGLRLSGFEV+TAVDGAEALRSATE RPDAIVLDINMPVLDGVSVV
Sbjct 1 MVVDDDSDVLASLERGLRLSGFEVSTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVV 60
Query 74 TALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTA 133
TALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRG+TA
Sbjct 61 TALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGATA 120
Query 134 TSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG 193
TSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG
Sbjct 121 TSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG 180
Query 194 YDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLRMQ 236
YDFAADTNVVDVFIGYLRRKLEA GGPRLLHTVRGVGFVLRMQ
Sbjct 181 YDFAADTNVVDVFIGYLRRKLEAHGGPRLLHTVRGVGFVLRMQ 223
>gi|240172200|ref|ZP_04750859.1| two component response transcriptional regulatory protein prra
[Mycobacterium kansasii ATCC 12478]
Length=233
Score = 421 bits (1083), Expect = 4e-116, Method: Compositional matrix adjust.
Identities = 228/233 (98%), Positives = 231/233 (99%), Gaps = 0/233 (0%)
Query 4 MDTGVTSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDIN 63
M+TGV+SPRVLVVDDDSDVLASLERGLRLSGFEV+TAVDGAEALRSATE RPDAIVLDIN
Sbjct 1 METGVSSPRVLVVDDDSDVLASLERGLRLSGFEVSTAVDGAEALRSATETRPDAIVLDIN 60
Query 64 MPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVK 123
MPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVK
Sbjct 61 MPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVK 120
Query 124 ALLRRRGSTATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLS 183
ALLRRRGSTATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLS
Sbjct 121 ALLRRRGSTATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLS 180
Query 184 RAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLRMQ 236
RAQLLELVWGYDFAADTNVVDVFIGYLRRKLEA GGPRLLHTVRGVGFVLRMQ
Sbjct 181 RAQLLELVWGYDFAADTNVVDVFIGYLRRKLEANGGPRLLHTVRGVGFVLRMQ 233
>gi|118616126|ref|YP_904458.1| two component response transcriptional regulatory protein PrrA
[Mycobacterium ulcerans Agy99]
gi|118568236|gb|ABL02987.1| two component response transcriptional regulatory protein PrrA
[Mycobacterium ulcerans Agy99]
Length=236
Score = 421 bits (1081), Expect = 5e-116, Method: Compositional matrix adjust.
Identities = 228/236 (97%), Positives = 230/236 (98%), Gaps = 0/236 (0%)
Query 1 MGGMDTGVTSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVL 60
MGGMDTG SPRVLVVDDDSDVLASLERGLRLSGFEV+TAVDGAEALRSATE RPDAIVL
Sbjct 1 MGGMDTGANSPRVLVVDDDSDVLASLERGLRLSGFEVSTAVDGAEALRSATETRPDAIVL 60
Query 61 DINMPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVA 120
DINMPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVA
Sbjct 61 DINMPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVA 120
Query 121 RVKALLRRRGSTATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTA 180
RVKALLRRRG+TATSSSE ITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTA
Sbjct 121 RVKALLRRRGATATSSSEIITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTA 180
Query 181 VLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLRMQ 236
VLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEA GGPRLLHTVRGVGFVLRM
Sbjct 181 VLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEANGGPRLLHTVRGVGFVLRMH 236
>gi|41406932|ref|NP_959768.1| hypothetical protein MAP0834c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118465275|ref|YP_880280.1| PrrA family transcriptional regulator [Mycobacterium avium 104]
gi|41395282|gb|AAS03151.1| hypothetical protein MAP_0834c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118166562|gb|ABK67459.1| two component response transcriptional regulatory protein prra
[Mycobacterium avium 104]
gi|336461286|gb|EGO40160.1| response regulator with CheY-like receiver domain-containing
protein [Mycobacterium avium subsp. paratuberculosis S397]
Length=233
Score = 417 bits (1073), Expect = 5e-115, Method: Compositional matrix adjust.
Identities = 226/233 (97%), Positives = 229/233 (99%), Gaps = 0/233 (0%)
Query 4 MDTGVTSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDIN 63
MDT +SPRVLVVDDDSDVLASLERGLRLSGFEV+TAVDGAEALRSATE RPDAIVLDIN
Sbjct 1 MDTAASSPRVLVVDDDSDVLASLERGLRLSGFEVSTAVDGAEALRSATETRPDAIVLDIN 60
Query 64 MPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVK 123
MPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVK
Sbjct 61 MPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVK 120
Query 124 ALLRRRGSTATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLS 183
ALLRRRG+TATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLS
Sbjct 121 ALLRRRGATATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLS 180
Query 184 RAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLRMQ 236
RAQLLELVWGYDFAADTNVVDVFIGYLRRKLEA GGPRLLHTVRGVGFVLRMQ
Sbjct 181 RAQLLELVWGYDFAADTNVVDVFIGYLRRKLEANGGPRLLHTVRGVGFVLRMQ 233
>gi|15828139|ref|NP_302402.1| two-component response regulator [Mycobacterium leprae TN]
gi|221230616|ref|YP_002504032.1| two-component response regulator [Mycobacterium leprae Br4923]
gi|34098418|sp|Q50136.2|PRRA_MYCLE RecName: Full=Transcriptional regulatory protein prrA
gi|2440114|emb|CAB16701.1| two-component regulator [Mycobacterium leprae]
gi|13093693|emb|CAC31078.1| two-component response regulator [Mycobacterium leprae]
gi|219933723|emb|CAR72220.1| two-component response regulator [Mycobacterium leprae Br4923]
Length=233
Score = 414 bits (1063), Expect = 8e-114, Method: Compositional matrix adjust.
Identities = 223/233 (96%), Positives = 228/233 (98%), Gaps = 0/233 (0%)
Query 4 MDTGVTSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDIN 63
MDTGV+SPRVLVVDDDSDVLASLERGLRLSGFEV+TA+DGAEALR+ATE RPDAIVLDIN
Sbjct 1 MDTGVSSPRVLVVDDDSDVLASLERGLRLSGFEVSTAIDGAEALRNATETRPDAIVLDIN 60
Query 64 MPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVK 123
MPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVK
Sbjct 61 MPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVK 120
Query 124 ALLRRRGSTATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLS 183
ALLRRRG+TATSSSETI VGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKT VLS
Sbjct 121 ALLRRRGATATSSSETIAVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTTVLS 180
Query 184 RAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLRMQ 236
RAQLLELVWGYDFAADTNVVDVFIGYLRRKLEA GPRLLHTVRGVGFVLRMQ
Sbjct 181 RAQLLELVWGYDFAADTNVVDVFIGYLRRKLEANSGPRLLHTVRGVGFVLRMQ 233
>gi|108801411|ref|YP_641608.1| two component transcriptional regulator [Mycobacterium sp. MCS]
gi|119870564|ref|YP_940516.1| two component transcriptional regulator [Mycobacterium sp. KMS]
gi|108771830|gb|ABG10552.1| two component transcriptional regulator, winged helix family
[Mycobacterium sp. MCS]
gi|119696653|gb|ABL93726.1| two component transcriptional regulator, winged helix family
[Mycobacterium sp. KMS]
Length=233
Score = 409 bits (1051), Expect = 2e-112, Method: Compositional matrix adjust.
Identities = 222/233 (96%), Positives = 226/233 (97%), Gaps = 0/233 (0%)
Query 4 MDTGVTSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDIN 63
MD+GV SPRVLVVDDD DVLASLERGLRLSGF+V+TAVDGAEALRSATE RPDAIVLDIN
Sbjct 1 MDSGVGSPRVLVVDDDPDVLASLERGLRLSGFDVSTAVDGAEALRSATETRPDAIVLDIN 60
Query 64 MPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVK 123
MPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVK
Sbjct 61 MPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVK 120
Query 124 ALLRRRGSTATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLS 183
ALLRRRGS+AT SSETI VGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLS
Sbjct 121 ALLRRRGSSATFSSETIQVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLS 180
Query 184 RAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLRMQ 236
RAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGG PRLLHTVRGVGFVLR Q
Sbjct 181 RAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGAPRLLHTVRGVGFVLRTQ 233
>gi|126437395|ref|YP_001073086.1| two component transcriptional regulator [Mycobacterium sp. JLS]
gi|126237195|gb|ABO00596.1| two component transcriptional regulator, winged helix family
[Mycobacterium sp. JLS]
Length=233
Score = 408 bits (1048), Expect = 4e-112, Method: Compositional matrix adjust.
Identities = 221/233 (95%), Positives = 225/233 (97%), Gaps = 0/233 (0%)
Query 4 MDTGVTSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDIN 63
MD+GV SPRVLVVDDD DVLASLERGLRLSGF+V+TAVDGAEALRSATE RPDAIVLDIN
Sbjct 1 MDSGVGSPRVLVVDDDPDVLASLERGLRLSGFDVSTAVDGAEALRSATETRPDAIVLDIN 60
Query 64 MPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVK 123
MPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVK
Sbjct 61 MPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVK 120
Query 124 ALLRRRGSTATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLS 183
ALLRRRGS+AT SSETI VGPLEVDIPGRRARVNG DVDLTKREFDLLAVLAEHKTAVLS
Sbjct 121 ALLRRRGSSATFSSETIQVGPLEVDIPGRRARVNGADVDLTKREFDLLAVLAEHKTAVLS 180
Query 184 RAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLRMQ 236
RAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGG PRLLHTVRGVGFVLR Q
Sbjct 181 RAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGAPRLLHTVRGVGFVLRTQ 233
>gi|118468513|ref|YP_889895.1| DNA-binding response regulator PrrA [Mycobacterium smegmatis
str. MC2 155]
gi|118169800|gb|ABK70696.1| DNA-binding response regulator PrrA [Mycobacterium smegmatis
str. MC2 155]
Length=236
Score = 405 bits (1042), Expect = 2e-111, Method: Compositional matrix adjust.
Identities = 220/236 (94%), Positives = 225/236 (96%), Gaps = 0/236 (0%)
Query 1 MGGMDTGVTSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVL 60
M +G+ SPRVLVVDDD DVLASLERGLRLSGF+V+TAVDGAEALRSATE RPDAIVL
Sbjct 1 MDSTTSGMASPRVLVVDDDPDVLASLERGLRLSGFDVSTAVDGAEALRSATETRPDAIVL 60
Query 61 DINMPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVA 120
DINMPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVA
Sbjct 61 DINMPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVA 120
Query 121 RVKALLRRRGSTATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTA 180
RVKALLRRRGS+AT SSETI VGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTA
Sbjct 121 RVKALLRRRGSSATFSSETIQVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTA 180
Query 181 VLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLRMQ 236
VLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGG PRLLHTVRGVGFVLR Q
Sbjct 181 VLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGAPRLLHTVRGVGFVLRTQ 236
>gi|120405958|ref|YP_955787.1| two component transcriptional regulator [Mycobacterium vanbaalenii
PYR-1]
gi|119958776|gb|ABM15781.1| two component transcriptional regulator, winged helix family
[Mycobacterium vanbaalenii PYR-1]
Length=233
Score = 405 bits (1040), Expect = 4e-111, Method: Compositional matrix adjust.
Identities = 220/233 (95%), Positives = 224/233 (97%), Gaps = 0/233 (0%)
Query 4 MDTGVTSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDIN 63
MD+G SP+VLVVDDD DVLASLERGLRLSGF+V TAVDGAEALRSATE RPDAIVLDIN
Sbjct 1 MDSGAGSPKVLVVDDDPDVLASLERGLRLSGFDVYTAVDGAEALRSATETRPDAIVLDIN 60
Query 64 MPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVK 123
MPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVK
Sbjct 61 MPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVK 120
Query 124 ALLRRRGSTATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLS 183
ALLRRRGSTAT SSETITVGPLEVDIPGRRARV+GVDVDLTKREFDLLAVLAEHKTAVLS
Sbjct 121 ALLRRRGSTATFSSETITVGPLEVDIPGRRARVDGVDVDLTKREFDLLAVLAEHKTAVLS 180
Query 184 RAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLRMQ 236
RAQLLELVWGYDFAADTNVVDVFIGYLRRKLEA G PRLLHTVRGVGFVLR Q
Sbjct 181 RAQLLELVWGYDFAADTNVVDVFIGYLRRKLEANGAPRLLHTVRGVGFVLRQQ 233
>gi|145222334|ref|YP_001133012.1| two component transcriptional regulator [Mycobacterium gilvum
PYR-GCK]
gi|315442767|ref|YP_004075646.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Mycobacterium sp. Spyr1]
gi|145214820|gb|ABP44224.1| two component transcriptional regulator, winged helix family
[Mycobacterium gilvum PYR-GCK]
gi|315261070|gb|ADT97811.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Mycobacterium sp. Spyr1]
Length=231
Score = 401 bits (1031), Expect = 4e-110, Method: Compositional matrix adjust.
Identities = 221/233 (95%), Positives = 224/233 (97%), Gaps = 2/233 (0%)
Query 4 MDTGVTSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDIN 63
MD+G SPRVLVVDDD DVLASLERGLRLSGF+V TAVDGAEALRSATE RPDAIVLDIN
Sbjct 1 MDSG--SPRVLVVDDDPDVLASLERGLRLSGFDVFTAVDGAEALRSATETRPDAIVLDIN 58
Query 64 MPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVK 123
MPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVK
Sbjct 59 MPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVK 118
Query 124 ALLRRRGSTATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLS 183
ALLRRRGSTAT SSETITVGPLEVDIPGRRARV+GVDVDLTKREFDLLAVLAEHKTAVLS
Sbjct 119 ALLRRRGSTATFSSETITVGPLEVDIPGRRARVDGVDVDLTKREFDLLAVLAEHKTAVLS 178
Query 184 RAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLRMQ 236
RAQLLELVWGYDFAADTNVVDVFIGYLRRKLEA G PRLLHTVRGVGFVLR Q
Sbjct 179 RAQLLELVWGYDFAADTNVVDVFIGYLRRKLEANGAPRLLHTVRGVGFVLRQQ 231
>gi|169628053|ref|YP_001701702.1| transcriptional regulatory protein PrrA [Mycobacterium abscessus
ATCC 19977]
gi|169240020|emb|CAM61048.1| Probable transcriptional regulatory protein PrrA [Mycobacterium
abscessus]
Length=233
Score = 394 bits (1011), Expect = 8e-108, Method: Compositional matrix adjust.
Identities = 214/233 (92%), Positives = 222/233 (96%), Gaps = 0/233 (0%)
Query 4 MDTGVTSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDIN 63
M G SPRVLVVDDD+DVLASLERGLRLSGFEV TA DGAEALR ATE+RPDAIVLDIN
Sbjct 1 MVDGQGSPRVLVVDDDADVLASLERGLRLSGFEVNTASDGAEALRCATEHRPDAIVLDIN 60
Query 64 MPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVK 123
MPVLDGVSVVTALRAMDNDVPVCVLSAR+SVDDRVAGLEAGADDYL KPFVLAELVARVK
Sbjct 61 MPVLDGVSVVTALRAMDNDVPVCVLSARTSVDDRVAGLEAGADDYLTKPFVLAELVARVK 120
Query 124 ALLRRRGSTATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLS 183
ALLRRRG+ ATSS+ETITVGPLEV+IPGRRAR+NGV+VDLTKREFDLLAVLAEHKTAVLS
Sbjct 121 ALLRRRGAVATSSTETITVGPLEVEIPGRRARINGVEVDLTKREFDLLAVLAEHKTAVLS 180
Query 184 RAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLRMQ 236
RAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGG PRLLHTVRGVGFVLR Q
Sbjct 181 RAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGAPRLLHTVRGVGFVLRSQ 233
>gi|333989463|ref|YP_004522077.1| two-component response transcriptional regulatory protein PrrA
[Mycobacterium sp. JDM601]
gi|333485431|gb|AEF34823.1| two-component response transcriptional regulatory protein PrrA
[Mycobacterium sp. JDM601]
Length=236
Score = 384 bits (985), Expect = 8e-105, Method: Compositional matrix adjust.
Identities = 216/236 (92%), Positives = 220/236 (94%), Gaps = 0/236 (0%)
Query 1 MGGMDTGVTSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVL 60
M SPRVLVVDDDSDVLASLERGLRLSGFEVATA DGAEALRSA E RPDAIVL
Sbjct 1 MNNPANAAASPRVLVVDDDSDVLASLERGLRLSGFEVATAADGAEALRSAKETRPDAIVL 60
Query 61 DINMPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVA 120
DINMPVLDGVSVVTALRAM +DVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVA
Sbjct 61 DINMPVLDGVSVVTALRAMGDDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVA 120
Query 121 RVKALLRRRGSTATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTA 180
RV+A+LRRRGS A+SSSETITVGPLEVDIPGRRARV GVDVDLTKREFDLLAVLAEHKTA
Sbjct 121 RVRAMLRRRGSAASSSSETITVGPLEVDIPGRRARVKGVDVDLTKREFDLLAVLAEHKTA 180
Query 181 VLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLRMQ 236
VLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGG PRLLHTVRGVGFVLR Q
Sbjct 181 VLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGAPRLLHTVRGVGFVLRTQ 236
>gi|226308071|ref|YP_002768031.1| two-component response regulator PrrA [Rhodococcus erythropolis
PR4]
gi|229488493|ref|ZP_04382359.1| DNA-binding response regulator PrrA [Rhodococcus erythropolis
SK121]
gi|226187188|dbj|BAH35292.1| two-component response regulator PrrA [Rhodococcus erythropolis
PR4]
gi|229323997|gb|EEN89752.1| DNA-binding response regulator PrrA [Rhodococcus erythropolis
SK121]
Length=234
Score = 325 bits (833), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 164/227 (73%), Positives = 193/227 (86%), Gaps = 3/227 (1%)
Query 11 PRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGV 70
P++LVVDDD+DVL SLERGLRLSGF V TAVDGA+ALR ++ RPDA+VLDINMPVLDG
Sbjct 5 PKILVVDDDADVLTSLERGLRLSGFTVLTAVDGADALRVISDKRPDAVVLDINMPVLDGT 64
Query 71 SVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRG 130
VVTALRA N++P+CVLSAR+SVDDR+AGLE+GADDY+VKPFVLAELVAR++A+LRR
Sbjct 65 GVVTALRAAGNEIPICVLSARNSVDDRIAGLESGADDYMVKPFVLAELVARIRAMLRRSN 124
Query 131 STATSSSE---TITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQL 187
+ A SE T+ VG L++D+ GRR RV+G +V LTKREF+LL VLA + VL+R +L
Sbjct 125 TPAGDHSEGTNTLRVGNLDIDLSGRRVRVDGKEVPLTKREFELLEVLAHNSGIVLTRERL 184
Query 188 LELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLR 234
LELVWGYDF ADTNVVDVFIGYLRRK E+GG PRLLHTVRGVGFVLR
Sbjct 185 LELVWGYDFVADTNVVDVFIGYLRRKFESGGSPRLLHTVRGVGFVLR 231
>gi|229492138|ref|ZP_04385947.1| DNA-binding response regulator PrrA [Rhodococcus erythropolis
SK121]
gi|229320926|gb|EEN86738.1| DNA-binding response regulator PrrA [Rhodococcus erythropolis
SK121]
Length=234
Score = 313 bits (803), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 160/228 (71%), Positives = 184/228 (81%), Gaps = 0/228 (0%)
Query 9 TSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLD 68
T R+L+VDDD+ VL SLERGLRLSGF+ ATAVDG AL S + P A+VLD+NMP LD
Sbjct 6 TRERILIVDDDAKVLNSLERGLRLSGFDTATAVDGRSALSSVNKQCPAALVLDVNMPGLD 65
Query 69 GVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRR 128
GV VVTALRA+ N+VP+CVLSARSSV DR+AGLEAGADDYL KPF LAELVAR++ALLRR
Sbjct 66 GVGVVTALRAIGNEVPICVLSARSSVGDRIAGLEAGADDYLTKPFELAELVARLRALLRR 125
Query 129 RGSTATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLL 188
S ITVGPL VD+ G RA ++G ++LTKREFDLL+VLAEH VLSRAQLL
Sbjct 126 TTRATPSVDHPITVGPLTVDLRGHRAHIDGRRIELTKREFDLLSVLAEHAGVVLSRAQLL 185
Query 189 ELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLRMQ 236
LVWGYDFAADTNVVDVF+ YLR+KLE G PR++HTVRGVGFVLR +
Sbjct 186 RLVWGYDFAADTNVVDVFVTYLRKKLEVDGAPRVIHTVRGVGFVLRAE 233
>gi|226303939|ref|YP_002763897.1| OmpR family two-component response regulator [Rhodococcus erythropolis
PR4]
gi|226183054|dbj|BAH31158.1| probable OmpR family two-component response regulator [Rhodococcus
erythropolis PR4]
Length=231
Score = 313 bits (802), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 160/228 (71%), Positives = 184/228 (81%), Gaps = 0/228 (0%)
Query 9 TSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLD 68
T R+L+VDDD+ VL SLERGLRLSGF+ ATAVDG AL S + P A+VLD+NMP LD
Sbjct 3 TRERILIVDDDAKVLNSLERGLRLSGFDTATAVDGRSALSSVNKQCPAALVLDVNMPGLD 62
Query 69 GVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRR 128
GV VVTALRA+ N+VP+CVLSARSSV DR+AGLEAGADDYL KPF LAELVAR++ALLRR
Sbjct 63 GVGVVTALRAIGNEVPICVLSARSSVGDRIAGLEAGADDYLTKPFELAELVARLRALLRR 122
Query 129 RGSTATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLL 188
S ITVGPL VD+ G RA ++G ++LTKREFDLL+VLAEH VLSRAQLL
Sbjct 123 TTRATPSVDHPITVGPLTVDLRGHRAHIDGGRIELTKREFDLLSVLAEHAGVVLSRAQLL 182
Query 189 ELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLRMQ 236
LVWGYDFAADTNVVDVF+ YLR+KLE G PR++HTVRGVGFVLR +
Sbjct 183 RLVWGYDFAADTNVVDVFVTYLRKKLEVDGAPRVIHTVRGVGFVLRAE 230
>gi|325676260|ref|ZP_08155939.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
gi|325552821|gb|EGD22504.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
Length=233
Score = 311 bits (796), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 172/233 (74%), Positives = 193/233 (83%), Gaps = 1/233 (0%)
Query 4 MDTGVTSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDIN 63
MD S R+L+VDDD VL+SL RGLRLSGFE+ TA DGA ALR+ +E+RPDAIVLD+N
Sbjct 1 MDAVTDSARILLVDDDPKVLSSLTRGLRLSGFELDTADDGASALRAVSESRPDAIVLDVN 60
Query 64 MPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVK 123
MPVLDGVSVVTALRAM NDVP+CVLSARS+V DR+AGLEAGADDYL KPF L ELVAR++
Sbjct 61 MPVLDGVSVVTALRAMGNDVPICVLSARSTVGDRIAGLEAGADDYLTKPFELGELVARLR 120
Query 124 ALLRRRGSTATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLS 183
ALLRR T + T+TVGPLEVD+PGRR + G +DLTKREFDLL VLAE+ VLS
Sbjct 121 ALLRRAPRTPAPAG-TVTVGPLEVDLPGRRVHMGGERIDLTKREFDLLEVLAENAGIVLS 179
Query 184 RAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLRMQ 236
R +LLELVWGYDF ADTNVVDVF YLRRKLEAGG PR+LHTVRGVGFVLR Q
Sbjct 180 RVRLLELVWGYDFDADTNVVDVFATYLRRKLEAGGRPRVLHTVRGVGFVLREQ 232
>gi|54022631|ref|YP_116873.1| putative two-component system response regulator [Nocardia farcinica
IFM 10152]
gi|54014139|dbj|BAD55509.1| putative two-component system response regulator [Nocardia farcinica
IFM 10152]
Length=238
Score = 300 bits (767), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 171/236 (73%), Positives = 196/236 (84%), Gaps = 3/236 (1%)
Query 1 MGGMDTGVTSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVL 60
MGG+ T T P VLVVDDD DVLAS+ERGLRLSGF V A DGA ALRS + PDA+VL
Sbjct 1 MGGVSTSPT-PTVLVVDDDEDVLASVERGLRLSGFHVLVARDGAAALRSVNADCPDAVVL 59
Query 61 DINMPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVA 120
D+NMPVLDG VVTALRA+ NDVP+CVLSAR+SVDDR++GLE+GADDYLVKPFVLAELVA
Sbjct 60 DMNMPVLDGAGVVTALRALGNDVPICVLSARASVDDRISGLESGADDYLVKPFVLAELVA 119
Query 121 RVKALLRRR--GSTATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHK 178
R+KALLRRR A ++ ITVGPLEVD G RA ++G +++LTKREF+LL+ LA +
Sbjct 120 RIKALLRRRTDAPAAAATPGAITVGPLEVDEAGYRALLHGREIELTKREFELLSTLARNA 179
Query 179 TAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLR 234
VLSR +LLELVWGYDFAADTNVVDVF+GYLRRKLEA G PRLLHT+RGVGFVLR
Sbjct 180 GVVLSRERLLELVWGYDFAADTNVVDVFVGYLRRKLEADGTPRLLHTIRGVGFVLR 235
>gi|226364471|ref|YP_002782253.1| OmpR family two-component response regulator [Rhodococcus opacus
B4]
gi|226242960|dbj|BAH53308.1| OmpR family two-component response regulator [Rhodococcus opacus
B4]
Length=238
Score = 296 bits (758), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 148/215 (69%), Positives = 176/215 (82%), Gaps = 5/215 (2%)
Query 25 SLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVP 84
SLERGLRLSGF V TAVDGA+ALR +E RPDA+VLD+NMPV+DG VVTALRAM ND+P
Sbjct 21 SLERGLRLSGFTVLTAVDGADALRVVSEQRPDAMVLDMNMPVIDGTGVVTALRAMSNDIP 80
Query 85 VCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATSSSET----- 139
+CVLSAR +VDDR++GLE+GADDYLVKPFVLAEL+AR++A+LRR G+T + +++
Sbjct 81 ICVLSARDTVDDRISGLESGADDYLVKPFVLAELIARIRAMLRRHGTTTAAPADSQATPP 140
Query 140 ITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAAD 199
I VG LE+ RR + G +V LTKREF+LL VLA + VLSR +LLELVWGYDF AD
Sbjct 141 IRVGALEIRTSARRVFMAGEEVTLTKREFELLEVLARNVGIVLSRERLLELVWGYDFVAD 200
Query 200 TNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLR 234
TNVVDVF+GYLRRK E GG PR+LHTVRGVGFVLR
Sbjct 201 TNVVDVFVGYLRRKFEVGGQPRILHTVRGVGFVLR 235
>gi|333918531|ref|YP_004492112.1| two component response transcriptional regulator prra [Amycolicicoccus
subflavus DQS3-9A1]
gi|333480752|gb|AEF39312.1| two component response transcriptional regulatory protein prra
[Amycolicicoccus subflavus DQS3-9A1]
Length=231
Score = 294 bits (753), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 145/214 (68%), Positives = 174/214 (82%), Gaps = 1/214 (0%)
Query 24 ASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDV 83
+SL+RGLRLSGF+V TA DG ALR+ PDAIVLD+ MP LDGVSVVTALRAM +D+
Sbjct 18 SSLKRGLRLSGFDVMTAEDGESALRTIRTQEPDAIVLDVTMPRLDGVSVVTALRAMGSDI 77
Query 84 PVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATSSS-ETITV 142
P+CVLSARSSVDDR+AGLEAGADDYL KPF L EL+ARV+A+LRRR + S E +T
Sbjct 78 PICVLSARSSVDDRIAGLEAGADDYLTKPFALGELIARVRAMLRRRPDQSPSPKRELLTA 137
Query 143 GPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNV 202
G LE+D+ RRA + G ++DLTKREF+LL L +H+ AVLSR QLLE+VWGYDF ADTNV
Sbjct 138 GQLEIDVAARRAVIAGTELDLTKREFELLTTLVQHRDAVLSRRQLLEIVWGYDFDADTNV 197
Query 203 VDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLRMQ 236
VDVF+GYLR+K+EA G R+LHTVRGVGF+LR +
Sbjct 198 VDVFVGYLRKKMEADGARRMLHTVRGVGFILRTR 231
>gi|111021968|ref|YP_704940.1| response regulator, two-component system [Rhodococcus jostii
RHA1]
gi|110821498|gb|ABG96782.1| response regulator, two-component system [Rhodococcus jostii
RHA1]
Length=238
Score = 294 bits (752), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 148/215 (69%), Positives = 177/215 (83%), Gaps = 5/215 (2%)
Query 25 SLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVP 84
SLERGLRLSGF V TAVDGA+ALR +E RPDA+VLD+NMPV+DG VVTALRAM+ND+P
Sbjct 21 SLERGLRLSGFTVLTAVDGADALRVVSERRPDAMVLDMNMPVIDGTGVVTALRAMNNDIP 80
Query 85 VCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTA-----TSSSET 139
+CVLSAR +VDDR++GLE+GADDYLVKPFVLAEL+AR++A+LRR G+TA + ++
Sbjct 81 ICVLSARDTVDDRISGLESGADDYLVKPFVLAELIARIRAMLRRHGTTAAAPAGSPATPP 140
Query 140 ITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAAD 199
I VG LE+ RR + G +V LTKREF+LL VLA + VLSR +LLELVWGYDF AD
Sbjct 141 IRVGALEIRTSARRVFMAGEEVTLTKREFELLEVLARNVGIVLSRERLLELVWGYDFVAD 200
Query 200 TNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLR 234
TNVVDVF+GYLRRK E GG PR+L+TVRGVGFVLR
Sbjct 201 TNVVDVFVGYLRRKFEVGGQPRILYTVRGVGFVLR 235
>gi|312138449|ref|YP_004005785.1| two component system response regulator [Rhodococcus equi 103S]
gi|311887788|emb|CBH47100.1| two component system response regulator [Rhodococcus equi 103S]
Length=231
Score = 285 bits (729), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 148/213 (70%), Positives = 169/213 (80%), Gaps = 2/213 (0%)
Query 24 ASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDV 83
ASLERGLRLSGF V TA DGA AL+ E PDA+VLD+NMPVLDG VVTALR N+V
Sbjct 16 ASLERGLRLSGFTVLTASDGAVALKVVAEAAPDAVVLDMNMPVLDGTGVVTALRRAGNEV 75
Query 84 PVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRR--GSTATSSSETIT 141
P+CVLSARSSVDDR+AGLE+GADDYLVKPFVLAELVAR++A+LRRR AT + I
Sbjct 76 PICVLSARSSVDDRIAGLESGADDYLVKPFVLAELVARIRAMLRRRSVAVAATDTDPPIV 135
Query 142 VGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTN 201
VGPL VD+ GRR + ++ LTKREF+L VLA + VLSR +LL+LVWGYDF ADTN
Sbjct 136 VGPLSVDLAGRRVWLGDTEITLTKREFELTEVLARNAGVVLSRERLLDLVWGYDFVADTN 195
Query 202 VVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLR 234
VVDVF+GYLRRK E G PRL+HTVRGVGFVLR
Sbjct 196 VVDVFVGYLRRKFEIDGTPRLVHTVRGVGFVLR 228
>gi|325676168|ref|ZP_08155849.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
gi|325553078|gb|EGD22759.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
Length=244
Score = 284 bits (726), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 148/213 (70%), Positives = 169/213 (80%), Gaps = 2/213 (0%)
Query 24 ASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDV 83
ASLERGLRLSGF V TA DGA ALR + PDA+VLD+NMPVLDG VVTALR N+V
Sbjct 29 ASLERGLRLSGFTVLTASDGAVALRVVADAAPDAVVLDMNMPVLDGTGVVTALRRAGNEV 88
Query 84 PVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRR--GSTATSSSETIT 141
P+CVLSARSSVDDR+AGLE+GADDYLVKPFVLAELVAR++A+LRRR AT + I
Sbjct 89 PICVLSARSSVDDRIAGLESGADDYLVKPFVLAELVARIRAMLRRRSVAVAATDTDPPIV 148
Query 142 VGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTN 201
VGPL VD+ GRR + ++ LTKREF+L VLA + VLSR +LL+LVWGYDF ADTN
Sbjct 149 VGPLSVDLAGRRVWLGDTEIALTKREFELTEVLARNAGVVLSRERLLDLVWGYDFVADTN 208
Query 202 VVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLR 234
VVDVF+GYLRRK E G PRL+HTVRGVGFVLR
Sbjct 209 VVDVFVGYLRRKFEIDGTPRLVHTVRGVGFVLR 241
>gi|296395434|ref|YP_003660318.1| transcriptional regulator [Segniliparus rotundus DSM 44985]
gi|296182581|gb|ADG99487.1| two component transcriptional regulator, winged helix family
[Segniliparus rotundus DSM 44985]
Length=238
Score = 281 bits (720), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 159/235 (68%), Positives = 184/235 (79%), Gaps = 4/235 (1%)
Query 4 MDTGVTSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDIN 63
M+T SP VLVVDDD DVL+SL+RGLRLSGF V TA +GA AL + + PDA++LD+N
Sbjct 1 METSAGSPTVLVVDDDPDVLSSLQRGLRLSGFSVVTADNGAAALSAVHQQHPDALILDMN 60
Query 64 MPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVK 123
MP LDGVSVVTALRAM +D+P+CVLSARSSV DR+ GLEAGADDYL KPFVL EL+ARVK
Sbjct 61 MPGLDGVSVVTALRAMGDDIPICVLSARSSVGDRIEGLEAGADDYLTKPFVLGELIARVK 120
Query 124 ALLRRRGSTA----TSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKT 179
ALLRR +T+ T I V L VDIPGRR V+ ++LTKREF+LLA LAE+
Sbjct 121 ALLRRPSTTSRAAPTVEYGVIHVDYLGVDIPGRRVTVDDESIELTKREFELLAALAENTG 180
Query 180 AVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLR 234
VLSR +LLE VWGYDFAADTNVVDVF+GYLR+KLE G RL+HTVRG GFVLR
Sbjct 181 VVLSRTELLERVWGYDFAADTNVVDVFVGYLRKKLELKGRHRLIHTVRGYGFVLR 235
>gi|317509412|ref|ZP_07967031.1| response regulator receiver domain-containing protein [Segniliparus
rugosus ATCC BAA-974]
gi|316252335|gb|EFV11786.1| response regulator receiver domain-containing protein [Segniliparus
rugosus ATCC BAA-974]
Length=239
Score = 279 bits (714), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 160/234 (69%), Positives = 183/234 (79%), Gaps = 4/234 (1%)
Query 5 DTGVTSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINM 64
+T +SP VLVVDDD DVL+SL+RGLRLSGF V TA +GA AL + + PDA++LD+NM
Sbjct 3 NTPTSSPTVLVVDDDPDVLSSLQRGLRLSGFSVVTADNGAAALSAVHQQHPDALILDMNM 62
Query 65 PVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKA 124
P LDGVSVVTALRAM +D+P+CVLSARSSV DR+ GLEAGADDYL KPFVL ELVARVKA
Sbjct 63 PGLDGVSVVTALRAMGDDIPICVLSARSSVGDRIEGLEAGADDYLTKPFVLGELVARVKA 122
Query 125 LLRRRGST----ATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTA 180
LLRR +T T I V L VDIPGRR V+ V+LTKREF+LLA LAE+
Sbjct 123 LLRRPSTTNRPAPTVEFGVIHVDYLSVDIPGRRVTVDDEPVELTKREFELLAALAENTGV 182
Query 181 VLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLR 234
VLSR +LLE VWGYDFAADTNVVDVF+GYLR+KLE G RL+HTVRG GFVLR
Sbjct 183 VLSRTELLERVWGYDFAADTNVVDVFVGYLRKKLELKGRHRLIHTVRGYGFVLR 236
>gi|108797145|ref|YP_637342.1| two component transcriptional regulator [Mycobacterium sp. MCS]
gi|119866230|ref|YP_936182.1| two component transcriptional regulator [Mycobacterium sp. KMS]
gi|108767564|gb|ABG06286.1| two component transcriptional regulator, winged helix family
[Mycobacterium sp. MCS]
gi|119692319|gb|ABL89392.1| two component transcriptional regulator, winged helix family
[Mycobacterium sp. KMS]
Length=243
Score = 276 bits (707), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 146/222 (66%), Positives = 172/222 (78%), Gaps = 1/222 (0%)
Query 13 VLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSV 72
VL+VDDD DV S+ RGLR SGF+V A +G EALR + DA+VLD+ MP LDGV+V
Sbjct 20 VLMVDDDPDVRTSVARGLRHSGFDVRVAANGKEALRLLSAESHDALVLDVQMPELDGVAV 79
Query 73 VTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGST 132
VTALRA+ ND+P+CVLSAR +V+DR+AGLEAGADDYL KPF L ELVAR+ ALL RR
Sbjct 80 VTALRALGNDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALL-RRAHH 138
Query 133 ATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVW 192
+ S+T+TVGPL +D R V+G VDLTKREFDLLAVLAE+ VLSR +LLELVW
Sbjct 139 SDRPSDTMTVGPLTIDTARRLVFVDGERVDLTKREFDLLAVLAENNGVVLSRQRLLELVW 198
Query 193 GYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLR 234
GYDF DTNV DVFI YLRRKLE G PR++HTVRG+G+VLR
Sbjct 199 GYDFDVDTNVADVFISYLRRKLERDGLPRVIHTVRGIGYVLR 240
>gi|126432768|ref|YP_001068459.1| two component transcriptional regulator [Mycobacterium sp. JLS]
gi|126232568|gb|ABN95968.1| two component transcriptional regulator, winged helix family
[Mycobacterium sp. JLS]
Length=243
Score = 276 bits (707), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 146/222 (66%), Positives = 172/222 (78%), Gaps = 1/222 (0%)
Query 13 VLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSV 72
VL+VDDD DV S+ RGLR SGF+V A +G EALR + DA+VLD+ MP LDGV+V
Sbjct 20 VLMVDDDPDVRTSVARGLRHSGFDVRVAANGKEALRLLSAESHDALVLDVQMPELDGVAV 79
Query 73 VTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGST 132
VTALRA+ ND+P+CVLSAR +V+DR+AGLEAGADDYL KPF L ELVAR+ ALL RR
Sbjct 80 VTALRALGNDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALL-RRAHH 138
Query 133 ATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVW 192
+ S+T+TVGPL +D R V+G VDLTKREFDLLAVLAE+ VLSR +LLELVW
Sbjct 139 SDRPSDTMTVGPLTIDTARRLVFVDGERVDLTKREFDLLAVLAENNGVVLSRQRLLELVW 198
Query 193 GYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLR 234
GYDF DTNV DVFI YLRRKLE G PR++HTVRG+G+VLR
Sbjct 199 GYDFDVDTNVADVFISYLRRKLERDGLPRVIHTVRGIGYVLR 240
>gi|118470690|ref|YP_884659.1| two component response transcriptional regulatory protein prra
[Mycobacterium smegmatis str. MC2 155]
gi|118171977|gb|ABK72873.1| two component response transcriptional regulatory protein prra
[Mycobacterium smegmatis str. MC2 155]
Length=246
Score = 276 bits (706), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 146/224 (66%), Positives = 172/224 (77%), Gaps = 1/224 (0%)
Query 13 VLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSV 72
VL+VDDD DV S+ RGLR SGF+V A G EALR + DA+VLD+ MP LDGV+V
Sbjct 23 VLMVDDDPDVRTSVARGLRHSGFDVRVAASGKEALRLLSTESHDALVLDVQMPELDGVAV 82
Query 73 VTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGST 132
VTALRA+ ND+P+CVLSAR +V+DR+AGLEAGADDYL KPF L ELVAR+ ALL RR S
Sbjct 83 VTALRALGNDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALL-RRASH 141
Query 133 ATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVW 192
S+T+TVGP+ +D R V+G VDLTKREFDLLAVLAE+ VLSR +LLELVW
Sbjct 142 TEQPSDTMTVGPVTIDTARRLVFVSGERVDLTKREFDLLAVLAENAGVVLSRQRLLELVW 201
Query 193 GYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLRMQ 236
GYDF DTNV DVFI YLRRKLE G PR++HTVRG+G+VLR +
Sbjct 202 GYDFDVDTNVADVFISYLRRKLERDGVPRVIHTVRGIGYVLREE 245
>gi|120401218|ref|YP_951047.1| two component transcriptional regulator [Mycobacterium vanbaalenii
PYR-1]
gi|119954036|gb|ABM11041.1| two component transcriptional regulator, winged helix family
[Mycobacterium vanbaalenii PYR-1]
Length=244
Score = 268 bits (686), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 142/224 (64%), Positives = 170/224 (76%), Gaps = 1/224 (0%)
Query 13 VLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSV 72
VL+VDDD DV S+ RGLR SGF+V A G EALR + DA+VLD+ MP LDGV+V
Sbjct 21 VLMVDDDPDVRTSVARGLRHSGFDVRVAATGKEALRLLSSESHDALVLDVQMPELDGVAV 80
Query 73 VTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGST 132
VTALRA+ ND+P+CVLSAR +V+DR+AGLEAGADDYL KPF L ELVAR+ ALL RR
Sbjct 81 VTALRALGNDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALL-RRAHH 139
Query 133 ATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVW 192
+ +S+T+TVG L +D R V G V+LTKREFDLLA LAE+ VLSR +LLELVW
Sbjct 140 SDPTSDTMTVGSLTIDTARRLVFVAGERVELTKREFDLLAALAENAGVVLSRQRLLELVW 199
Query 193 GYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLRMQ 236
GYDF DTNV DVF+ YLRRKLE G PR++HTVRG+G+VLR +
Sbjct 200 GYDFDVDTNVADVFVSYLRRKLEREGLPRVIHTVRGIGYVLRAE 243
>gi|145221065|ref|YP_001131743.1| two component transcriptional regulator [Mycobacterium gilvum
PYR-GCK]
gi|315441964|ref|YP_004074843.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Mycobacterium sp. Spyr1]
gi|145213551|gb|ABP42955.1| two component transcriptional regulator, winged helix family
[Mycobacterium gilvum PYR-GCK]
gi|315260267|gb|ADT97008.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Mycobacterium sp. Spyr1]
Length=248
Score = 268 bits (685), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 142/224 (64%), Positives = 170/224 (76%), Gaps = 1/224 (0%)
Query 13 VLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSV 72
VL+VDDD DV S+ RGLR SGF+V A G EALR + DA+VLD+ MP LDGV+V
Sbjct 25 VLMVDDDPDVRTSVARGLRHSGFDVRVAATGKEALRLLSSESHDALVLDVQMPELDGVAV 84
Query 73 VTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGST 132
VTALRA+ ND+P+CVLSAR +V+DR+AGLEAGADDYL KPF L ELVAR+ ALL RR
Sbjct 85 VTALRALGNDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALL-RRAHH 143
Query 133 ATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVW 192
+ +S+T+TVG L +D R V G V+LTKREFDLLA LAE+ VLSR +LLELVW
Sbjct 144 SDPTSDTMTVGSLTIDTARRLVFVAGERVELTKREFDLLAALAENAGVVLSRQRLLELVW 203
Query 193 GYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLRMQ 236
GYDF DTNV DVF+ YLRRKLE G PR++HTVRG+G+VLR +
Sbjct 204 GYDFDVDTNVADVFVSYLRRKLERDGLPRVIHTVRGIGYVLREE 247
>gi|169629014|ref|YP_001702663.1| putative transcriptional regulatory protein PrrA [Mycobacterium
abscessus ATCC 19977]
gi|169240981|emb|CAM62009.1| Putative transcriptional regulatory protein PrrA [Mycobacterium
abscessus]
Length=236
Score = 257 bits (656), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 144/226 (64%), Positives = 179/226 (80%), Gaps = 1/226 (0%)
Query 12 RVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVS 71
+VL+VDDD DV S+ RGLR SGF+V AVDG +AL + PDA+VLD+ MP LDGV+
Sbjct 10 KVLMVDDDPDVRNSVARGLRHSGFDVRVAVDGRDALTQLAADEPDALVLDVQMPELDGVA 69
Query 72 VVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGS 131
VVTALRA+ ND+P+CVLSAR +V+DR+AGLEAGADDYL KPF L ELVAR++ALLRRRG+
Sbjct 70 VVTALRALGNDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLRALLRRRGA 129
Query 132 TATSSSET-ITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLEL 190
+ +++ ITVG + VD+ R VNG V+L+KREFDLL VLAE+ VLSR +LLEL
Sbjct 130 GSGGLADSAITVGQITVDVSRRLVFVNGERVELSKREFDLLVVLAENTGVVLSRTRLLEL 189
Query 191 VWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLRMQ 236
VWGYDF +TNV DVF+ YLRRKLEAGG R++HTVRGVG+V+R +
Sbjct 190 VWGYDFDVETNVADVFVSYLRRKLEAGGAARVIHTVRGVGYVMREE 235
>gi|240172708|ref|ZP_04751367.1| transcriptional regulatory protein PrrA [Mycobacterium kansasii
ATCC 12478]
Length=242
Score = 243 bits (620), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 135/228 (60%), Positives = 170/228 (75%), Gaps = 1/228 (0%)
Query 10 SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDG 69
+P +LVV DD DVL SLERGLRLSGF++ +A G +AL E RP A+V+DI+ P L G
Sbjct 14 TPSLLVVADDEDVLTSLERGLRLSGFDMTSAKTGPDALGVLAEARPQAVVVDIDQPTLRG 73
Query 70 VSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRR 129
VSVV+A+R++DN +PVCVLS RS++ DRV GL GADD++ KP+ L+ELV RV+ LL
Sbjct 74 VSVVSAVRSVDNRIPVCVLSGRSAISDRVPGLAEGADDFMYKPYRLSELVTRVRGLLCPP 133
Query 130 GSTATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLE 189
S+ETI+VGPL V+ RRA +NG+++ LT+REFDLLAVLA+H T +LSRA+LLE
Sbjct 134 VLVTNFSTETISVGPLMVETGRRRASINGIEIQLTRREFDLLAVLAQHATEILSRARLLE 193
Query 190 LVWG-YDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLRMQ 236
LVWG FAADT VVD FI +R KL+ GPRLLHTV GFVLR+Q
Sbjct 194 LVWGNSHFAADTRVVDAFIDSVRSKLDLVCGPRLLHTVPSAGFVLRVQ 241
>gi|118473019|ref|YP_889726.1| DNA-binding response regulator [Mycobacterium smegmatis str.
MC2 155]
gi|160012470|sp|A0R3I8.1|MPRA_MYCS2 RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
persistence regulator A
gi|118174306|gb|ABK75202.1| DNA-binding response regulator [Mycobacterium smegmatis str.
MC2 155]
Length=230
Score = 226 bits (576), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 118/223 (53%), Positives = 154/223 (70%), Gaps = 0/223 (0%)
Query 12 RVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVS 71
R+LVVDDD V SL R L +G+ V A DG EAL + T NRPDA++LD+ MP LDG+
Sbjct 4 RILVVDDDRAVRESLRRSLSFNGYSVELAQDGVEALDAITNNRPDALILDVMMPRLDGLE 63
Query 72 VVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGS 131
V LR+ +D+P+ VL+AR SV +RVAGL+AGADDYL KPF L EL+AR++ALLRR S
Sbjct 64 VCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTVS 123
Query 132 TATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELV 191
+ S+ +T L +D R G + LT+ EF LL +L + VL+R+++LE V
Sbjct 124 DDSGDSQKMTFSDLTLDPVTREVTRGGRQISLTRTEFSLLEMLIANPRRVLTRSRILEEV 183
Query 192 WGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLR 234
WG+DF N ++V+IGYLRRK EA G PRL+HTVRGVG+VLR
Sbjct 184 WGFDFPTSGNALEVYIGYLRRKTEAEGEPRLIHTVRGVGYVLR 226
>gi|336115936|ref|YP_004570702.1| two-component system response regulator MprA [Microlunatus phosphovorus
NM-1]
gi|334683714|dbj|BAK33299.1| two-component system response regulator MprA [Microlunatus phosphovorus
NM-1]
Length=231
Score = 223 bits (569), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 115/226 (51%), Positives = 152/226 (68%), Gaps = 3/226 (1%)
Query 12 RVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVS 71
++LVVDDD V SL+R L+ +G+EV TA DG +A+ NRPDA+++D+ MP LDG+
Sbjct 2 QILVVDDDQAVRDSLQRSLQYNGYEVTTAEDGLQAMAKLAANRPDAVIMDVMMPRLDGLE 61
Query 72 VVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGS 131
LRA NDVP+ VL+AR +V DRV GL+AG DDY+ KPF L EL+AR++AL+RR G+
Sbjct 62 ATRMLRAAGNDVPILVLTARDAVTDRVDGLDAGGDDYMAKPFALDELLARLRALVRRAGT 121
Query 132 TATS---SSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLL 188
TA S S++ +T L ++ R ++LT+ EF LL H VL R+ LL
Sbjct 122 TADSNDPSTQALTFSDLVLNTQTREVLRGSRSINLTRTEFALLEAFMHHPRRVLERSWLL 181
Query 189 ELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLR 234
VWG+DF N ++V+IGYLRRK EA G PRLLHTVRGVG+VLR
Sbjct 182 NEVWGFDFPTTANSLEVYIGYLRRKTEANGEPRLLHTVRGVGYVLR 227
>gi|296140967|ref|YP_003648210.1| winged helix family two component transcriptional regulator [Tsukamurella
paurometabola DSM 20162]
gi|296029101|gb|ADG79871.1| two component transcriptional regulator, winged helix family
[Tsukamurella paurometabola DSM 20162]
Length=228
Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 117/223 (53%), Positives = 152/223 (69%), Gaps = 0/223 (0%)
Query 12 RVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVS 71
R+LVVDDD V SL R L +G++V TAVDG +AL NRPDA+VLD+NMP LDG+
Sbjct 2 RILVVDDDRAVRESLRRSLTFNGYQVDTAVDGQDALDHIASNRPDALVLDLNMPRLDGLE 61
Query 72 VVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGS 131
V LR+ +D+P+ VL+AR V DRV+GL+AGADDYL KPF L EL+AR++ALLRR
Sbjct 62 VCRRLRSAGDDLPILVLTARDGVSDRVSGLDAGADDYLPKPFALEELLARMRALLRRAVP 121
Query 132 TATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELV 191
S +E + L +D R + LT+ EF LL +L + VL+R+++LE V
Sbjct 122 DTASDNEVLRFEDLTLDPATREVSRGDRSISLTRTEFSLLEMLMGNPRRVLTRSRILEEV 181
Query 192 WGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLR 234
WGYDF N ++V++GYLRRK EA G PRL+HTVRGVG+VLR
Sbjct 182 WGYDFPTSGNALEVYVGYLRRKTEADGEPRLIHTVRGVGYVLR 224
>gi|297625282|ref|YP_003687045.1| two-component response regulator [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
gi|296921047|emb|CBL55585.1| two-component response regulator [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
Length=231
Score = 221 bits (563), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 116/224 (52%), Positives = 148/224 (67%), Gaps = 1/224 (0%)
Query 12 RVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATEN-RPDAIVLDINMPVLDGV 70
++LVVDDD V SL R L SG+EV TA DG EAL + N PDA+V+D+ MP LDG+
Sbjct 4 QILVVDDDQAVRDSLARSLHYSGYEVETAEDGLEALAKLSTNLHPDAVVMDVMMPRLDGL 63
Query 71 SVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRG 130
LRA NDVP+ VL+AR +V DRV GL+AGADDY+VKPF L EL+AR++AL RR
Sbjct 64 ETTKMLRANGNDVPILVLTARDAVGDRVDGLDAGADDYMVKPFSLEELLARLRALTRRSR 123
Query 131 STATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLEL 190
+ ++E ++ + +D R G + LT+ EF LL EH VL R+ LL
Sbjct 124 PESQQANEVLSFADMTLDPQTREVTRGGRRISLTRTEFALLQTFMEHPGKVLDRSWLLNE 183
Query 191 VWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLR 234
VWG+DF A N ++V+IGYLRRK E G PRL+HTVRGVG+VLR
Sbjct 184 VWGFDFPATANSLEVYIGYLRRKTEQEGEPRLIHTVRGVGYVLR 227
>gi|269926213|ref|YP_003322836.1| two component transcriptional regulator, winged helix family
[Thermobaculum terrenum ATCC BAA-798]
gi|269789873|gb|ACZ42014.1| two component transcriptional regulator, winged helix family
[Thermobaculum terrenum ATCC BAA-798]
Length=228
Score = 221 bits (562), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 112/224 (50%), Positives = 152/224 (68%), Gaps = 4/224 (1%)
Query 11 PRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGV 70
P +LV+DDD ++ + L R L +G+EV TA +G E L+ A N PD ++LD MP +DG+
Sbjct 4 PLILVIDDDKNITSFLRRALSYAGYEVKTAHNGQEGLQVALSNAPDLVILDWLMPDMDGI 63
Query 71 SVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRG 130
V LR+ DN +P+ +L+A+ V DRV GLEAGADDYLVKPF EL+ARVKALLRR
Sbjct 64 EVCKRLRSADN-IPILMLTAKDEVSDRVQGLEAGADDYLVKPFAHEELIARVKALLRR-- 120
Query 131 STATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLEL 190
+ S + + L VD+ R + +DLT +EFDLL +H VL+R QLL++
Sbjct 121 -ASPDSRKVLRFADLSVDLGTREVKRGQRVIDLTAKEFDLLVTFMQHPRQVLTRDQLLQI 179
Query 191 VWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLR 234
VWG+D +++VV V++GYLR KLEAGG RL+HT+RGVG+VLR
Sbjct 180 VWGFDMEVESHVVAVYVGYLRDKLEAGGESRLIHTLRGVGYVLR 223
>gi|295837513|ref|ZP_06824446.1| DNA-binding response regulator [Streptomyces sp. SPB74]
gi|295826557|gb|EFG64921.1| DNA-binding response regulator [Streptomyces sp. SPB74]
Length=244
Score = 219 bits (558), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 116/227 (52%), Positives = 149/227 (66%), Gaps = 4/227 (1%)
Query 12 RVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVS 71
R+LVVDD+ V +L R L G+ V A DG EALR A PD +VLDI MP +DG++
Sbjct 14 RILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALRQAAATPPDLVVLDIQMPGMDGLT 73
Query 72 VVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRR-- 129
LRA + VPV +L+AR +V DRV GL+AGADDYLVKPF L EL AR++ALLRR
Sbjct 74 AARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 133
Query 130 --GSTATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQL 187
A ET++ G L +++ R G V+LT+ EF LL + H VL+R Q+
Sbjct 134 AVAEQAADDEETLSFGDLRMNLATREVTRGGRAVELTRTEFTLLEMFLAHPRQVLTREQI 193
Query 188 LELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLR 234
L+ VWG+DF +N +DV++ YLRRK EAGG PRL+HTVRGVG+VLR
Sbjct 194 LKTVWGFDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYVLR 240
>gi|333025498|ref|ZP_08453562.1| putative two-component system response regulator [Streptomyces
sp. Tu6071]
gi|332745350|gb|EGJ75791.1| putative two-component system response regulator [Streptomyces
sp. Tu6071]
Length=264
Score = 218 bits (554), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 115/227 (51%), Positives = 148/227 (66%), Gaps = 4/227 (1%)
Query 12 RVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVS 71
R+LVVDD+ V +L R L G+ V A DG EAL+ A PD +VLDI MP +DG++
Sbjct 34 RILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALQKAAATPPDLVVLDIQMPGMDGLT 93
Query 72 VVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRR-- 129
LRA + VPV +L+AR +V DRV GL+AGADDYLVKPF L EL AR++ALLRR
Sbjct 94 AARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 153
Query 130 --GSTATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQL 187
A ET+ G L +++ R G V+LT+ EF LL + H VL+R Q+
Sbjct 154 AVAQQAADDEETLAFGDLRMNLATREVTRGGRAVELTRTEFTLLEMFLAHPRQVLTREQI 213
Query 188 LELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLR 234
L+ VWG+DF +N +DV++ YLRRK EAGG PRL+HTVRGVG+VLR
Sbjct 214 LKTVWGFDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYVLR 260
>gi|108801265|ref|YP_641462.1| two component transcriptional regulator [Mycobacterium sp. MCS]
gi|119870416|ref|YP_940368.1| two component transcriptional regulator [Mycobacterium sp. KMS]
gi|126437246|ref|YP_001072937.1| two component transcriptional regulator [Mycobacterium sp. JLS]
6 more sequence titles
Length=230
Score = 217 bits (553), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 116/223 (53%), Positives = 148/223 (67%), Gaps = 0/223 (0%)
Query 12 RVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVS 71
R+LVVDDD V SL R L +G+ V A DG EAL NRPDA+VLD+ MP LDG+
Sbjct 4 RILVVDDDRAVRESLRRSLSFNGYSVELAQDGVEALDLIANNRPDAVVLDVMMPRLDGLE 63
Query 72 VVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGS 131
V LR+ +D+P+ VL+AR SV +RVAGL+AGADDYL KPF L EL+AR++ALLRR
Sbjct 64 VCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTSP 123
Query 132 TATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELV 191
S +T L +D R + LT+ EF LL +L + VL+R+++LE V
Sbjct 124 DEGPDSPALTFLDLTLDPVTREVTRGSRQISLTRTEFALLEMLIANPRRVLTRSRILEEV 183
Query 192 WGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLR 234
WG+DF N ++V+IGYLRRK EA G PRL+HTVRGVG+VLR
Sbjct 184 WGFDFPTSGNALEVYIGYLRRKTEASGEPRLIHTVRGVGYVLR 226
>gi|29830590|ref|NP_825224.1| two-component system response regulator [Streptomyces avermitilis
MA-4680]
gi|29607702|dbj|BAC71759.1| putative two-component system response regulator [Streptomyces
avermitilis MA-4680]
Length=243
Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 111/227 (49%), Positives = 150/227 (67%), Gaps = 4/227 (1%)
Query 12 RVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVS 71
R+L+VDD+ V +L+R L G++ AVDGA+AL AT +PD +VLDI MP +DG++
Sbjct 12 RILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKATAYQPDLVVLDIQMPRMDGLT 71
Query 72 VVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGS 131
+R P+ +L+AR +V DRV GL+AGADDYLVKPF L EL AR++ALLRR
Sbjct 72 AARRIRGAGTTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 131
Query 132 TATS----SSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQL 187
AT+ + +T G L +D+ R G V+L + EF LL + H VL+R Q+
Sbjct 132 AATAVGVPEDDALTFGDLRMDLATREVTRGGRSVELIRTEFTLLEMFLAHPRQVLTREQI 191
Query 188 LELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLR 234
L+ VWG+DF +N +DV++ YLRRK EAGG PRL+HTVRGVG+VLR
Sbjct 192 LKAVWGFDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYVLR 238
>gi|158317067|ref|YP_001509575.1| two component transcriptional regulator [Frankia sp. EAN1pec]
gi|158112472|gb|ABW14669.1| two component transcriptional regulator, winged helix family
[Frankia sp. EAN1pec]
Length=246
Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 118/238 (50%), Positives = 153/238 (65%), Gaps = 15/238 (6%)
Query 12 RVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVS 71
RVLVVDDD+ V SLER LR G+EV TA DG AL ++PD +VLD+ MP +DG+
Sbjct 2 RVLVVDDDAAVRESLERSLRFEGYEVRTAPDGVAALEVVARDQPDIVVLDVMMPRMDGLE 61
Query 72 VVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRR-- 129
LRA +DVPV +L+AR + DRV+GL+ GADDYLVKPF L EL AR++AL+RR
Sbjct 62 TCRRLRARGDDVPVLMLTARDGLADRVSGLDVGADDYLVKPFALEELFARLRALIRRSTL 121
Query 130 ------GSTATSSSE-------TITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAE 176
G +E ++ + +D R+ G ++ LTK EF+LL +
Sbjct 122 VTRAGVGHGPAHGAEPGHGVPAALSYAGVALDPASRQVLREGRELTLTKTEFELLELFLT 181
Query 177 HKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLR 234
H VLSR+ ++E VWGYDF +N ++VF+ YLRRKLEAGG PRLLHTVRGVG+VLR
Sbjct 182 HPRQVLSRSMIMEKVWGYDFGPSSNSLEVFVSYLRRKLEAGGEPRLLHTVRGVGYVLR 239
>gi|289770266|ref|ZP_06529644.1| two-component system response regulator [Streptomyces lividans
TK24]
gi|289700465|gb|EFD67894.1| two-component system response regulator [Streptomyces lividans
TK24]
Length=248
Score = 217 bits (552), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 112/229 (49%), Positives = 150/229 (66%), Gaps = 5/229 (2%)
Query 12 RVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVS 71
R+L+VDD+ V +L+R L G++ AVDGA+AL AT RPD +VLDI MP +DG++
Sbjct 16 RILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKATAYRPDLVVLDIQMPRMDGLT 75
Query 72 VVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGS 131
+R + P+ +L+AR +V DRV GL+AGADDYLVKPF L EL AR++ALLRR
Sbjct 76 AARRIRGAGDLTPIVMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 135
Query 132 TA-----TSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQ 186
A +T+T L +D+ R G V+LT+ EF LL + H VL+R Q
Sbjct 136 AAAVEATAEDDDTLTFADLTMDLATREVSRAGRPVELTRTEFTLLEMFMAHPRQVLTREQ 195
Query 187 LLELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLRM 235
+L+ VWG+DF +N +DV++ YLRRK EAGG PRL+HTVRGVG+VLR
Sbjct 196 ILKAVWGFDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYVLRQ 244
>gi|302520777|ref|ZP_07273119.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces
sp. SPB78]
gi|302429672|gb|EFL01488.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces
sp. SPB78]
Length=244
Score = 217 bits (552), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 115/227 (51%), Positives = 148/227 (66%), Gaps = 4/227 (1%)
Query 12 RVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVS 71
R+LVVDD+ V +L R L G+ V A DG EAL+ A PD +VLDI MP +DG++
Sbjct 14 RILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALQKAAATPPDLVVLDIQMPGMDGLT 73
Query 72 VVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRR-- 129
LRA + VPV +L+AR +V DRV GL+AGADDYLVKPF L EL AR++ALLRR
Sbjct 74 AARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 133
Query 130 --GSTATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQL 187
A ET+ G L +++ R G V+LT+ EF LL + H VL+R Q+
Sbjct 134 AVAQQAADDEETLAFGDLRMNLATREVTRGGRAVELTRTEFTLLEMFLAHPRQVLTREQI 193
Query 188 LELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLR 234
L+ VWG+DF +N +DV++ YLRRK EAGG PRL+HTVRGVG+VLR
Sbjct 194 LKTVWGFDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYVLR 240
>gi|21222554|ref|NP_628333.1| two-component systen response regulator [Streptomyces coelicolor
A3(2)]
gi|7636029|emb|CAB88489.1| putative two-component systen response regulator [Streptomyces
coelicolor A3(2)]
Length=248
Score = 217 bits (552), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 112/229 (49%), Positives = 150/229 (66%), Gaps = 5/229 (2%)
Query 12 RVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVS 71
R+L+VDD+ V +L+R L G++ AVDGA+AL AT RPD +VLDI MP +DG++
Sbjct 16 RILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKATAYRPDLVVLDIQMPRMDGLT 75
Query 72 VVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGS 131
+R + P+ +L+AR +V DRV GL+AGADDYLVKPF L EL AR++ALLRR
Sbjct 76 AARRIRGAGDLTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 135
Query 132 TA-----TSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQ 186
A +T+T L +D+ R G V+LT+ EF LL + H VL+R Q
Sbjct 136 AAAVEATAEDDDTLTFADLTMDLATREVSRAGRPVELTRTEFTLLEMFMAHPRQVLTREQ 195
Query 187 LLELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLRM 235
+L+ VWG+DF +N +DV++ YLRRK EAGG PRL+HTVRGVG+VLR
Sbjct 196 ILKAVWGFDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYVLRQ 244
Lambda K H
0.320 0.137 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 319551017258
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40