BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0912

Length=149
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|253800063|ref|YP_003033064.1|  hypothetical protein TBMG_03077...   288    3e-76
gi|254549891|ref|ZP_05140338.1|  hypothetical protein Mtube_05416...   287    4e-76
gi|15608052|ref|NP_215427.1|  transmembrane protein [Mycobacteriu...   286    5e-76
gi|167967688|ref|ZP_02549965.1|  conserved transmembrane protein ...   265    2e-69
gi|183984583|ref|YP_001852874.1|  hypothetical protein MMAR_4616 ...   215    1e-54
gi|118616053|ref|YP_904385.1|  hypothetical protein MUL_0157 [Myc...   209    7e-53
gi|342860518|ref|ZP_08717169.1|  hypothetical protein MCOL_16626 ...   209    1e-52
gi|240172905|ref|ZP_04751564.1|  hypothetical protein MkanA1_2656...   201    4e-50
gi|296169669|ref|ZP_06851287.1|  conserved hypothetical protein [...   196    9e-49
gi|41406944|ref|NP_959780.1|  hypothetical protein MAP0846 [Mycob...   193    8e-48
gi|336461274|gb|EGO40148.1|  hypothetical protein MAPs_32190 [Myc...   192    1e-47
gi|15828134|ref|NP_302397.1|  hypothetical protein ML2111 [Mycoba...   185    2e-45
gi|254773921|ref|ZP_05215437.1|  hypothetical protein MaviaA2_044...   171    4e-41
gi|254822965|ref|ZP_05227966.1|  hypothetical protein MintA_23759...   171    5e-41
gi|15840332|ref|NP_335369.1|  hypothetical protein MT0936 [Mycoba...   169    1e-40
gi|118464875|ref|YP_880290.1|  hypothetical protein MAV_1034 [Myc...   167    5e-40
gi|108801344|ref|YP_641541.1|  hypothetical protein Mmcs_4381 [My...   142    2e-32
gi|333989473|ref|YP_004522087.1|  transmembrane protein [Mycobact...   135    3e-30
gi|118470745|ref|YP_889847.1|  transmembrane protein [Mycobacteri...   129    1e-28
gi|145222394|ref|YP_001133072.1|  hypothetical protein Mflv_1804 ...   115    3e-24
gi|120405894|ref|YP_955723.1|  hypothetical protein Mvan_4945 [My...  99.0    2e-19
gi|169628077|ref|YP_001701726.1|  hypothetical protein MAB_0980 [...  92.4    2e-17
gi|281356450|ref|ZP_06242942.1|  ADP-ribosylation/Crystallin J1 [...  36.6    1.4  
gi|218677225|ref|YP_002396044.1|  zinc protease [Vibrio splendidu...  35.4    3.1  


>gi|253800063|ref|YP_003033064.1| hypothetical protein TBMG_03077 [Mycobacterium tuberculosis KZN 
1435]
 gi|297730417|ref|ZP_06959535.1| hypothetical protein MtubKR_04966 [Mycobacterium tuberculosis 
KZN R506]
 gi|253321566|gb|ACT26169.1| conserved membrane protein [Mycobacterium tuberculosis KZN 1435]
Length=157

 Score =  288 bits (736),  Expect = 3e-76, Method: Compositional matrix adjust.
 Identities = 149/149 (100%), Positives = 149/149 (100%), Gaps = 0/149 (0%)

Query  1    MTRRLRPGWLVALSAAVIAASTWMPWLTTTVGGGGWVNAIGGTHGSLELPHGFGPGQLIV  60
            MTRRLRPGWLVALSAAVIAASTWMPWLTTTVGGGGWVNAIGGTHGSLELPHGFGPGQLIV
Sbjct  9    MTRRLRPGWLVALSAAVIAASTWMPWLTTTVGGGGWVNAIGGTHGSLELPHGFGPGQLIV  68

Query  61   LLSSTLLVVGAMAGRGLSVKLSSIAALVVSLLIVALTVWYYKLNVNPPVSAEYGLYFGAA  120
            LLSSTLLVVGAMAGRGLSVKLSSIAALVVSLLIVALTVWYYKLNVNPPVSAEYGLYFGAA
Sbjct  69   LLSSTLLVVGAMAGRGLSVKLSSIAALVVSLLIVALTVWYYKLNVNPPVSAEYGLYFGAA  128

Query  121  GGVCAVGCSLWAAVSAASPGRRRHREVVR  149
            GGVCAVGCSLWAAVSAASPGRRRHREVVR
Sbjct  129  GGVCAVGCSLWAAVSAASPGRRRHREVVR  157


>gi|254549891|ref|ZP_05140338.1| hypothetical protein Mtube_05416 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|313657744|ref|ZP_07814624.1| hypothetical protein MtubKV_04956 [Mycobacterium tuberculosis 
KZN V2475]
Length=164

 Score =  287 bits (734),  Expect = 4e-76, Method: Compositional matrix adjust.
 Identities = 149/149 (100%), Positives = 149/149 (100%), Gaps = 0/149 (0%)

Query  1    MTRRLRPGWLVALSAAVIAASTWMPWLTTTVGGGGWVNAIGGTHGSLELPHGFGPGQLIV  60
            MTRRLRPGWLVALSAAVIAASTWMPWLTTTVGGGGWVNAIGGTHGSLELPHGFGPGQLIV
Sbjct  16   MTRRLRPGWLVALSAAVIAASTWMPWLTTTVGGGGWVNAIGGTHGSLELPHGFGPGQLIV  75

Query  61   LLSSTLLVVGAMAGRGLSVKLSSIAALVVSLLIVALTVWYYKLNVNPPVSAEYGLYFGAA  120
            LLSSTLLVVGAMAGRGLSVKLSSIAALVVSLLIVALTVWYYKLNVNPPVSAEYGLYFGAA
Sbjct  76   LLSSTLLVVGAMAGRGLSVKLSSIAALVVSLLIVALTVWYYKLNVNPPVSAEYGLYFGAA  135

Query  121  GGVCAVGCSLWAAVSAASPGRRRHREVVR  149
            GGVCAVGCSLWAAVSAASPGRRRHREVVR
Sbjct  136  GGVCAVGCSLWAAVSAASPGRRRHREVVR  164


>gi|15608052|ref|NP_215427.1| transmembrane protein [Mycobacterium tuberculosis H37Rv]
 gi|31792100|ref|NP_854593.1| transmembrane protein [Mycobacterium bovis AF2122/97]
 gi|121636835|ref|YP_977058.1| putative transmembrane protein [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 44 more sequence titles
 Length=149

 Score =  286 bits (733),  Expect = 5e-76, Method: Compositional matrix adjust.
 Identities = 149/149 (100%), Positives = 149/149 (100%), Gaps = 0/149 (0%)

Query  1    MTRRLRPGWLVALSAAVIAASTWMPWLTTTVGGGGWVNAIGGTHGSLELPHGFGPGQLIV  60
            MTRRLRPGWLVALSAAVIAASTWMPWLTTTVGGGGWVNAIGGTHGSLELPHGFGPGQLIV
Sbjct  1    MTRRLRPGWLVALSAAVIAASTWMPWLTTTVGGGGWVNAIGGTHGSLELPHGFGPGQLIV  60

Query  61   LLSSTLLVVGAMAGRGLSVKLSSIAALVVSLLIVALTVWYYKLNVNPPVSAEYGLYFGAA  120
            LLSSTLLVVGAMAGRGLSVKLSSIAALVVSLLIVALTVWYYKLNVNPPVSAEYGLYFGAA
Sbjct  61   LLSSTLLVVGAMAGRGLSVKLSSIAALVVSLLIVALTVWYYKLNVNPPVSAEYGLYFGAA  120

Query  121  GGVCAVGCSLWAAVSAASPGRRRHREVVR  149
            GGVCAVGCSLWAAVSAASPGRRRHREVVR
Sbjct  121  GGVCAVGCSLWAAVSAASPGRRRHREVVR  149


>gi|167967688|ref|ZP_02549965.1| conserved transmembrane protein [Mycobacterium tuberculosis H37Ra]
 gi|294996394|ref|ZP_06802085.1| hypothetical protein Mtub2_18304 [Mycobacterium tuberculosis 
210]
 gi|306783587|ref|ZP_07421909.1| conserved membrane protein [Mycobacterium tuberculosis SUMu003]
 26 more sequence titles
 Length=139

 Score =  265 bits (677),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 138/139 (99%), Positives = 139/139 (100%), Gaps = 0/139 (0%)

Query  11   VALSAAVIAASTWMPWLTTTVGGGGWVNAIGGTHGSLELPHGFGPGQLIVLLSSTLLVVG  70
            +ALSAAVIAASTWMPWLTTTVGGGGWVNAIGGTHGSLELPHGFGPGQLIVLLSSTLLVVG
Sbjct  1    MALSAAVIAASTWMPWLTTTVGGGGWVNAIGGTHGSLELPHGFGPGQLIVLLSSTLLVVG  60

Query  71   AMAGRGLSVKLSSIAALVVSLLIVALTVWYYKLNVNPPVSAEYGLYFGAAGGVCAVGCSL  130
            AMAGRGLSVKLSSIAALVVSLLIVALTVWYYKLNVNPPVSAEYGLYFGAAGGVCAVGCSL
Sbjct  61   AMAGRGLSVKLSSIAALVVSLLIVALTVWYYKLNVNPPVSAEYGLYFGAAGGVCAVGCSL  120

Query  131  WAAVSAASPGRRRHREVVR  149
            WAAVSAASPGRRRHREVVR
Sbjct  121  WAAVSAASPGRRRHREVVR  139


>gi|183984583|ref|YP_001852874.1| hypothetical protein MMAR_4616 [Mycobacterium marinum M]
 gi|183177909|gb|ACC43019.1| conserved hypothetical transmembrane protein [Mycobacterium marinum 
M]
Length=144

 Score =  215 bits (548),  Expect = 1e-54, Method: Compositional matrix adjust.
 Identities = 113/141 (81%), Positives = 118/141 (84%), Gaps = 0/141 (0%)

Query  1    MTRRLRPGWLVALSAAVIAASTWMPWLTTTVGGGGWVNAIGGTHGSLELPHGFGPGQLIV  60
            MTRRLRPGWLVAL AAV+ AS WMPWLTT VGGGGW NAIG  HG+LELP GFG GQLIV
Sbjct  1    MTRRLRPGWLVALFAAVMGASAWMPWLTTAVGGGGWANAIGVAHGNLELPTGFGAGQLIV  60

Query  61   LLSSTLLVVGAMAGRGLSVKLSSIAALVVSLLIVALTVWYYKLNVNPPVSAEYGLYFGAA  120
            LLSSTLLV GAM GRGLSV+LSSIAALV+SLLIVAL  WYYKLNVNPPVSAEYGLY G  
Sbjct  61   LLSSTLLVAGAMVGRGLSVRLSSIAALVISLLIVALAAWYYKLNVNPPVSAEYGLYVGIG  120

Query  121  GGVCAVGCSLWAAVSAASPGR  141
              VCAV CSLWA  +AA  GR
Sbjct  121  SAVCAVACSLWAVAAAAFGGR  141


>gi|118616053|ref|YP_904385.1| hypothetical protein MUL_0157 [Mycobacterium ulcerans Agy99]
 gi|118568163|gb|ABL02914.1| conserved hypothetical transmembrane protein [Mycobacterium ulcerans 
Agy99]
Length=144

 Score =  209 bits (533),  Expect = 7e-53, Method: Compositional matrix adjust.
 Identities = 113/145 (78%), Positives = 118/145 (82%), Gaps = 1/145 (0%)

Query  1    MTRRLRPGWLVALSAAVIAASTWMPWLTTTVGGGGWVNAIGGTHGSLELPHGFGPGQLIV  60
            MTRRLRPGWLVAL AAV+ AS WMPWLTT VGGGGW NAIG  HG+LELP GFG GQ IV
Sbjct  1    MTRRLRPGWLVALFAAVMGASAWMPWLTTAVGGGGWANAIGVAHGNLELPTGFGAGQQIV  60

Query  61   LLSSTLLVVGAMAGRGLSVKLSSIAALVVSLLIVALTVWYYKLNVNPPVSAEYGLYFGAA  120
            LLSS LLV GAM GRGLSV+LSSIAALV+SLLIVAL  WYYKLNVNPPVSAEYGLY G  
Sbjct  61   LLSSMLLVAGAMVGRGLSVRLSSIAALVISLLIVALAAWYYKLNVNPPVSAEYGLYVGIG  120

Query  121  GGVCAVGCSLWAAVSAASPGRRRHR  145
              VCAV CSLW AV+AA  G R  R
Sbjct  121  SAVCAVACSLW-AVAAAGFGGRSTR  144


>gi|342860518|ref|ZP_08717169.1| hypothetical protein MCOL_16626 [Mycobacterium colombiense CECT 
3035]
 gi|342132173|gb|EGT85414.1| hypothetical protein MCOL_16626 [Mycobacterium colombiense CECT 
3035]
Length=144

 Score =  209 bits (532),  Expect = 1e-52, Method: Compositional matrix adjust.
 Identities = 104/141 (74%), Positives = 120/141 (86%), Gaps = 0/141 (0%)

Query  1    MTRRLRPGWLVALSAAVIAASTWMPWLTTTVGGGGWVNAIGGTHGSLELPHGFGPGQLIV  60
            MTRRLRPGWLVA  A  ++AS W+PWL TTV GGGW NAIGG HG+LELP GFG GQLIV
Sbjct  1    MTRRLRPGWLVAFFAVAVSASAWLPWLRTTVNGGGWANAIGGAHGNLELPRGFGAGQLIV  60

Query  61   LLSSTLLVVGAMAGRGLSVKLSSIAALVVSLLIVALTVWYYKLNVNPPVSAEYGLYFGAA  120
            LL+STLLV+GAM GRGLSV+L+S+AAL++SLLIVALTVWYYK+NVNPPVSAEYGLY GA 
Sbjct  61   LLASTLLVLGAMMGRGLSVRLASVAALLISLLIVALTVWYYKINVNPPVSAEYGLYVGAG  120

Query  121  GGVCAVGCSLWAAVSAASPGR  141
              +CAV CSL A ++A + GR
Sbjct  121  AALCAVACSLVAVIAAVASGR  141


>gi|240172905|ref|ZP_04751564.1| hypothetical protein MkanA1_26567 [Mycobacterium kansasii ATCC 
12478]
Length=139

 Score =  201 bits (510),  Expect = 4e-50, Method: Compositional matrix adjust.
 Identities = 103/136 (76%), Positives = 112/136 (83%), Gaps = 0/136 (0%)

Query  1    MTRRLRPGWLVALSAAVIAASTWMPWLTTTVGGGGWVNAIGGTHGSLELPHGFGPGQLIV  60
            M RRLRPGWLVAL A +++ STW+PWLTTTVGGGGW NAIGGTHG+L LP GFG GQLI 
Sbjct  1    MIRRLRPGWLVALFAVIVSVSTWLPWLTTTVGGGGWANAIGGTHGNLALPPGFGAGQLIA  60

Query  61   LLSSTLLVVGAMAGRGLSVKLSSIAALVVSLLIVALTVWYYKLNVNPPVSAEYGLYFGAA  120
            LLSSTLLV GAM GRGLS KLSS+ ALVVSLLIVALT+WYY +NVNP VSAEYGLY G  
Sbjct  61   LLSSTLLVAGAMVGRGLSAKLSSVVALVVSLLIVALTIWYYTINVNPQVSAEYGLYVGGG  120

Query  121  GGVCAVGCSLWAAVSA  136
               CAV CSLWA  +A
Sbjct  121  AAGCAVVCSLWAVAAA  136


>gi|296169669|ref|ZP_06851287.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295895666|gb|EFG75362.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=144

 Score =  196 bits (498),  Expect = 9e-49, Method: Compositional matrix adjust.
 Identities = 100/130 (77%), Positives = 109/130 (84%), Gaps = 0/130 (0%)

Query  1    MTRRLRPGWLVALSAAVIAASTWMPWLTTTVGGGGWVNAIGGTHGSLELPHGFGPGQLIV  60
            MT RLRPGWLVA  A VI+AS W+PWLTT V GGGW NAIGG HG+LELP GFG GQLIV
Sbjct  1    MTSRLRPGWLVAFFALVISASAWLPWLTTAVNGGGWANAIGGAHGNLELPPGFGAGQLIV  60

Query  61   LLSSTLLVVGAMAGRGLSVKLSSIAALVVSLLIVALTVWYYKLNVNPPVSAEYGLYFGAA  120
            LLSS LLV GAM GRGLSV+L+S+AALV+SLLIVAL  WYYKLNVNPPVSA+YGLY GA 
Sbjct  61   LLSSALLVTGAMVGRGLSVRLASVAALVISLLIVALVAWYYKLNVNPPVSAQYGLYVGAG  120

Query  121  GGVCAVGCSL  130
              VCAV CS+
Sbjct  121  AAVCAVVCSI  130


>gi|41406944|ref|NP_959780.1| hypothetical protein MAP0846 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41395294|gb|AAS03163.1| hypothetical protein MAP_0846 [Mycobacterium avium subsp. paratuberculosis 
K-10]
Length=144

 Score =  193 bits (490),  Expect = 8e-48, Method: Compositional matrix adjust.
 Identities = 107/144 (75%), Positives = 120/144 (84%), Gaps = 0/144 (0%)

Query  1    MTRRLRPGWLVALSAAVIAASTWMPWLTTTVGGGGWVNAIGGTHGSLELPHGFGPGQLIV  60
            MTRRLRPGWLVAL A +I+AS W+PWL TTV GGGW NAIGG HG+LELP GFG GQLIV
Sbjct  1    MTRRLRPGWLVALCAVLISASAWLPWLRTTVNGGGWANAIGGAHGNLELPRGFGAGQLIV  60

Query  61   LLSSTLLVVGAMAGRGLSVKLSSIAALVVSLLIVALTVWYYKLNVNPPVSAEYGLYFGAA  120
            LL+STLLV GAM GRGLSVK++S+AAL++SLLIVALTVWYYKLNVNPPVSAEYGLY GA 
Sbjct  61   LLASTLLVAGAMMGRGLSVKVASVAALLISLLIVALTVWYYKLNVNPPVSAEYGLYVGAG  120

Query  121  GGVCAVGCSLWAAVSAASPGRRRH  144
            G  CAV CS+ A ++    GR R 
Sbjct  121  GAACAVACSMVATIAVLVSGRSRR  144


>gi|336461274|gb|EGO40148.1| hypothetical protein MAPs_32190 [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=144

 Score =  192 bits (488),  Expect = 1e-47, Method: Compositional matrix adjust.
 Identities = 106/144 (74%), Positives = 119/144 (83%), Gaps = 0/144 (0%)

Query  1    MTRRLRPGWLVALSAAVIAASTWMPWLTTTVGGGGWVNAIGGTHGSLELPHGFGPGQLIV  60
            MTRRLRPGWLVAL A +I+AS W+PWL TTV GGGW NAIGG HG+LELP GFG GQLIV
Sbjct  1    MTRRLRPGWLVALCAVLISASAWLPWLRTTVNGGGWANAIGGAHGNLELPRGFGAGQLIV  60

Query  61   LLSSTLLVVGAMAGRGLSVKLSSIAALVVSLLIVALTVWYYKLNVNPPVSAEYGLYFGAA  120
            LL+STLLV GAM GRGLSVK++S+AAL++SLLIVALTVWYYKLNVNPPVSAEYGLY GA 
Sbjct  61   LLASTLLVAGAMMGRGLSVKVASVAALLISLLIVALTVWYYKLNVNPPVSAEYGLYVGAG  120

Query  121  GGVCAVGCSLWAAVSAASPGRRRH  144
            G  CAV  S+ A ++    GR R 
Sbjct  121  GAACAVARSMVATIAVLVSGRSRR  144


>gi|15828134|ref|NP_302397.1| hypothetical protein ML2111 [Mycobacterium leprae TN]
 gi|221230611|ref|YP_002504027.1| hypothetical protein MLBr_02111 [Mycobacterium leprae Br4923]
 gi|699312|gb|AAA63074.1| u650f [Mycobacterium leprae]
 gi|13093688|emb|CAC31066.1| conserved hypothetical protein [Mycobacterium leprae]
 gi|219933718|emb|CAR72208.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length=144

 Score =  185 bits (470),  Expect = 2e-45, Method: Compositional matrix adjust.
 Identities = 98/141 (70%), Positives = 113/141 (81%), Gaps = 0/141 (0%)

Query  1    MTRRLRPGWLVALSAAVIAASTWMPWLTTTVGGGGWVNAIGGTHGSLELPHGFGPGQLIV  60
            M  RLR GWLVA  A ++  S W+PWLTT V   GW NAIGGTHG+LELP GFG GQLIV
Sbjct  1    MIHRLRLGWLVAFFATIVLISVWIPWLTTKVNDEGWANAIGGTHGNLELPSGFGAGQLIV  60

Query  61   LLSSTLLVVGAMAGRGLSVKLSSIAALVVSLLIVALTVWYYKLNVNPPVSAEYGLYFGAA  120
            LLSSTLLV GAM GRGLSVK++SIAAL++SLLIV + VWYY+LNVNPPV AE GLY GAA
Sbjct  61   LLSSTLLVAGAMMGRGLSVKVASIAALIISLLIVVIVVWYYQLNVNPPVVAECGLYLGAA  120

Query  121  GGVCAVGCSLWAAVSAASPGR  141
            G VCA+ CS+WA ++A + GR
Sbjct  121  GAVCAMVCSVWAVIAAVAAGR  141


>gi|254773921|ref|ZP_05215437.1| hypothetical protein MaviaA2_04492 [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=134

 Score =  171 bits (432),  Expect = 4e-41, Method: Compositional matrix adjust.
 Identities = 96/134 (72%), Positives = 110/134 (83%), Gaps = 0/134 (0%)

Query  11   VALSAAVIAASTWMPWLTTTVGGGGWVNAIGGTHGSLELPHGFGPGQLIVLLSSTLLVVG  70
            +AL A +I+AS W+PWL TTV GGGW NAIGG HG+LELP GFG GQLIVLL+STLLV G
Sbjct  1    MALCAVLISASAWLPWLRTTVNGGGWANAIGGAHGNLELPRGFGAGQLIVLLASTLLVAG  60

Query  71   AMAGRGLSVKLSSIAALVVSLLIVALTVWYYKLNVNPPVSAEYGLYFGAAGGVCAVGCSL  130
            AM GRGLSVK++S+AAL++SLLIVALTVWYYKLNVNPPVSAEYGLY GA G  CAV CS+
Sbjct  61   AMMGRGLSVKVASVAALLISLLIVALTVWYYKLNVNPPVSAEYGLYVGAGGAACAVACSM  120

Query  131  WAAVSAASPGRRRH  144
             A ++    GR R 
Sbjct  121  VAMIAVLVSGRSRR  134


>gi|254822965|ref|ZP_05227966.1| hypothetical protein MintA_23759 [Mycobacterium intracellulare 
ATCC 13950]
Length=134

 Score =  171 bits (432),  Expect = 5e-41, Method: Compositional matrix adjust.
 Identities = 97/134 (73%), Positives = 110/134 (83%), Gaps = 0/134 (0%)

Query  11   VALSAAVIAASTWMPWLTTTVGGGGWVNAIGGTHGSLELPHGFGPGQLIVLLSSTLLVVG  70
            +A  A V++AS W+PWL T V GGGW NAIGG HG+LELP GFG GQLIVLL+STLLV G
Sbjct  1    MAFFAVVVSASAWLPWLRTAVNGGGWANAIGGAHGNLELPPGFGAGQLIVLLASTLLVAG  60

Query  71   AMAGRGLSVKLSSIAALVVSLLIVALTVWYYKLNVNPPVSAEYGLYFGAAGGVCAVGCSL  130
            AM GRGLSVKL+S+AAL++SLLIVALTVWYYKLNVNPPVSAEYGLY GA G VCA  CS+
Sbjct  61   AMMGRGLSVKLASVAALLISLLIVALTVWYYKLNVNPPVSAEYGLYVGAGGAVCAAACSI  120

Query  131  WAAVSAASPGRRRH  144
             A +SA + GR R 
Sbjct  121  VAVISALASGRPRR  134


>gi|15840332|ref|NP_335369.1| hypothetical protein MT0936 [Mycobacterium tuberculosis CDC1551]
 gi|13880496|gb|AAK45183.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
Length=89

 Score =  169 bits (429),  Expect = 1e-40, Method: Compositional matrix adjust.
 Identities = 88/89 (99%), Positives = 89/89 (100%), Gaps = 0/89 (0%)

Query  61   LLSSTLLVVGAMAGRGLSVKLSSIAALVVSLLIVALTVWYYKLNVNPPVSAEYGLYFGAA  120
            +LSSTLLVVGAMAGRGLSVKLSSIAALVVSLLIVALTVWYYKLNVNPPVSAEYGLYFGAA
Sbjct  1    MLSSTLLVVGAMAGRGLSVKLSSIAALVVSLLIVALTVWYYKLNVNPPVSAEYGLYFGAA  60

Query  121  GGVCAVGCSLWAAVSAASPGRRRHREVVR  149
            GGVCAVGCSLWAAVSAASPGRRRHREVVR
Sbjct  61   GGVCAVGCSLWAAVSAASPGRRRHREVVR  89


>gi|118464875|ref|YP_880290.1| hypothetical protein MAV_1034 [Mycobacterium avium 104]
 gi|118166162|gb|ABK67059.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=129

 Score =  167 bits (423),  Expect = 5e-40, Method: Compositional matrix adjust.
 Identities = 93/128 (73%), Positives = 106/128 (83%), Gaps = 0/128 (0%)

Query  17   VIAASTWMPWLTTTVGGGGWVNAIGGTHGSLELPHGFGPGQLIVLLSSTLLVVGAMAGRG  76
            +I+AS W+PWL TTV GGGW NAIGG HG+LELP GFG GQLIVLL+STLLV GAM GRG
Sbjct  2    LISASAWLPWLRTTVNGGGWANAIGGAHGNLELPRGFGAGQLIVLLASTLLVAGAMMGRG  61

Query  77   LSVKLSSIAALVVSLLIVALTVWYYKLNVNPPVSAEYGLYFGAAGGVCAVGCSLWAAVSA  136
            LSVK++S+AAL++SLLIVALTVWYYKLNVNPPVSAEYGLY GA G  CAV CS+ A ++ 
Sbjct  62   LSVKVASVAALLISLLIVALTVWYYKLNVNPPVSAEYGLYVGAGGAACAVACSMVATIAV  121

Query  137  ASPGRRRH  144
               GR R 
Sbjct  122  LVSGRSRR  129


>gi|108801344|ref|YP_641541.1| hypothetical protein Mmcs_4381 [Mycobacterium sp. MCS]
 gi|119870497|ref|YP_940449.1| hypothetical protein Mkms_4468 [Mycobacterium sp. KMS]
 gi|126437327|ref|YP_001073018.1| hypothetical protein Mjls_4762 [Mycobacterium sp. JLS]
 gi|108771763|gb|ABG10485.1| conserved hypothetical protein [Mycobacterium sp. MCS]
 gi|119696586|gb|ABL93659.1| conserved hypothetical protein [Mycobacterium sp. KMS]
 gi|126237127|gb|ABO00528.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=139

 Score =  142 bits (357),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 82/138 (60%), Positives = 100/138 (73%), Gaps = 0/138 (0%)

Query  5    LRPGWLVALSAAVIAASTWMPWLTTTVGGGGWVNAIGGTHGSLELPHGFGPGQLIVLLSS  64
            LRPGWLVA  AAV+A S W+PWLTT   GGG  +AIGGT GSL LP  FG GQLIVLL+S
Sbjct  2    LRPGWLVAFCAAVLAVSAWLPWLTTDADGGGRASAIGGTVGSLVLPPRFGAGQLIVLLAS  61

Query  65   TLLVVGAMAGRGLSVKLSSIAALVVSLLIVALTVWYYKLNVNPPVSAEYGLYFGAAGGVC  124
             L+V GAMA RGLS + +S+AA+ +SLLI+ +T WYY++NV  PV   YGLY G    V 
Sbjct  62   ILVVAGAMAARGLSERAASVAAMAISLLILGMTAWYYRINVQTPVEPGYGLYVGGGVAVA  121

Query  125  AVGCSLWAAVSAASPGRR  142
            A+ CS+W+ V+A S G R
Sbjct  122  ALLCSVWSFVAAMSRGSR  139


>gi|333989473|ref|YP_004522087.1| transmembrane protein [Mycobacterium sp. JDM601]
 gi|333485442|gb|AEF34834.1| transmembrane protein [Mycobacterium sp. JDM601]
Length=138

 Score =  135 bits (339),  Expect = 3e-30, Method: Compositional matrix adjust.
 Identities = 81/134 (61%), Positives = 103/134 (77%), Gaps = 0/134 (0%)

Query  4    RLRPGWLVALSAAVIAASTWMPWLTTTVGGGGWVNAIGGTHGSLELPHGFGPGQLIVLLS  63
            R+ PGWLVAL AA+++ S W+PWLTT+  GGG  +AIGGT GS+ LP  FG GQLIVLL+
Sbjct  3    RVHPGWLVALFAAILSVSAWLPWLTTSAHGGGRASAIGGTAGSIALPPRFGVGQLIVLLA  62

Query  64   STLLVVGAMAGRGLSVKLSSIAALVVSLLIVALTVWYYKLNVNPPVSAEYGLYFGAAGGV  123
            + LLV GAM GRGL  +L+S+AALVVSL IVAL V +Y+LNV  P++A YGLY GA    
Sbjct  63   AVLLVAGAMIGRGLFSRLASVAALVVSLGIVALGVAFYRLNVAAPITAGYGLYIGAVSVA  122

Query  124  CAVGCSLWAAVSAA  137
             A+GCS+WA +++A
Sbjct  123  GALGCSVWALLTSA  136


>gi|118470745|ref|YP_889847.1| transmembrane protein [Mycobacterium smegmatis str. MC2 155]
 gi|118172032|gb|ABK72928.1| probable conserved transmembrane protein [Mycobacterium smegmatis 
str. MC2 155]
Length=130

 Score =  129 bits (325),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 79/132 (60%), Positives = 96/132 (73%), Gaps = 2/132 (1%)

Query  11   VALSAAVIAASTWMPWLTTTVGGGGWVNAIGGTHGSLELPHGFGPGQLIVLLSSTLLVVG  70
            +AL AA++  + W+PWLTT   GGG  NAIGG  GS+ LP GFGPGQLIVLL STL+V G
Sbjct  1    MALCAAILVVTAWLPWLTTGANGGGRANAIGGAVGSMVLPAGFGPGQLIVLLGSTLIVAG  60

Query  71   AMAGRGLSVKLSSIAALVVSLLIVALTVWYYKLNVNPPVSAEYGLYFGAAGGVCAVGCSL  130
            AMAG+GLS +L+S A L++SL +V LTVWYY LNV PPV+A YGLY G    + A   SL
Sbjct  61   AMAGQGLSERLASAAGLLISLALVGLTVWYYMLNVKPPVNAGYGLYTGGGLAILAALFSL  120

Query  131  WAAVSAASPGRR  142
            WA +S  + GRR
Sbjct  121  WALLS--TLGRR  130


>gi|145222394|ref|YP_001133072.1| hypothetical protein Mflv_1804 [Mycobacterium gilvum PYR-GCK]
 gi|315442826|ref|YP_004075705.1| hypothetical protein Mspyr1_11880 [Mycobacterium sp. Spyr1]
 gi|145214880|gb|ABP44284.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
 gi|315261129|gb|ADT97870.1| hypothetical protein Mspyr1_11880 [Mycobacterium sp. Spyr1]
Length=141

 Score =  115 bits (287),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 73/141 (52%), Positives = 94/141 (67%), Gaps = 3/141 (2%)

Query  4    RLRPGWLVALSAAVIAASTWMPWLTTTVGGGGWVNAIGGTHGSLELPHGFGP-GQLIVLL  62
            R  PGWLVAL A ++A S W+PWLT   GG    NAIG   G + +P      GQL+VLL
Sbjct  3    RALPGWLVALCALIVAVSAWLPWLTAADGGRA--NAIGSVVGPMPVPPPGFGVGQLVVLL  60

Query  63   SSTLLVVGAMAGRGLSVKLSSIAALVVSLLIVALTVWYYKLNVNPPVSAEYGLYFGAAGG  122
            +STL+V GAMA RG+S +++S AAL +S+L+V L +WYY+L V PPV+A YGLY G A  
Sbjct  61   ASTLVVSGAMAARGISGRMASTAALAISILLVVLALWYYRLYVYPPVTAGYGLYVGGAVA  120

Query  123  VCAVGCSLWAAVSAASPGRRR  143
            + AV  S+WA +S  S G  R
Sbjct  121  LLAVVLSVWAMLSTWSTGSLR  141


>gi|120405894|ref|YP_955723.1| hypothetical protein Mvan_4945 [Mycobacterium vanbaalenii PYR-1]
 gi|119958712|gb|ABM15717.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=143

 Score = 99.0 bits (245),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 74/133 (56%), Positives = 95/133 (72%), Gaps = 2/133 (1%)

Query  4    RLRPGWLVALSAAVIAASTWMPWLTTTVGGGGWVNAIGGTHGSLELPH-GFGPGQLIVLL  62
            R  PGWLVAL A ++A + W+PWLT+  GGG   NAIGG  G++ +P   FG GQL+VLL
Sbjct  3    RALPGWLVALCALLVAVTAWLPWLTSAEGGGR-ANAIGGVAGAMPVPPPAFGVGQLVVLL  61

Query  63   SSTLLVVGAMAGRGLSVKLSSIAALVVSLLIVALTVWYYKLNVNPPVSAEYGLYFGAAGG  122
            SSTL+V GAMA RG+S +++S AAL VS+L+V L VW+Y+L V  PVSA YGLY  AA  
Sbjct  62   SSTLVVAGAMAARGISGRMASTAALAVSVLLVVLIVWFYRLYVYSPVSAGYGLYVAAALA  121

Query  123  VCAVGCSLWAAVS  135
            + AV  S+W  +S
Sbjct  122  LVAVLLSVWTMLS  134


>gi|169628077|ref|YP_001701726.1| hypothetical protein MAB_0980 [Mycobacterium abscessus ATCC 19977]
 gi|169240044|emb|CAM61072.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=144

 Score = 92.4 bits (228),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 51/111 (46%), Positives = 76/111 (69%), Gaps = 0/111 (0%)

Query  6    RPGWLVALSAAVIAASTWMPWLTTTVGGGGWVNAIGGTHGSLELPHGFGPGQLIVLLSST  65
            R GWL+A +  VI  S W+PWL T+  GGG  NAIGG  GS+ LP GFG GQLI+L+S+ 
Sbjct  3    RAGWLIAFTGLVIGFSVWLPWLRTSASGGGRANAIGGATGSVVLPAGFGAGQLILLVSAL  62

Query  66   LLVVGAMAGRGLSVKLSSIAALVVSLLIVALTVWYYKLNVNPPVSAEYGLY  116
            L+V G M G+ +  +++ +AA  ++L+++AL + YY+ N+ PP+   YG +
Sbjct  63   LVVAGCMVGQHILHRIAPVAAGALALVLLALELLYYRTNIKPPIVTGYGFW  113


>gi|281356450|ref|ZP_06242942.1| ADP-ribosylation/Crystallin J1 [Victivallis vadensis ATCC BAA-548]
 gi|281317142|gb|EFB01164.1| ADP-ribosylation/Crystallin J1 [Victivallis vadensis ATCC BAA-548]
Length=640

 Score = 36.6 bits (83),  Expect = 1.4, Method: Composition-based stats.
 Identities = 16/45 (36%), Positives = 24/45 (54%), Gaps = 4/45 (8%)

Query  100  YYKLN----VNPPVSAEYGLYFGAAGGVCAVGCSLWAAVSAASPG  140
            Y+K N    ++PPVS  Y  +F   G  C +   +WA ++A  PG
Sbjct  91   YFKRNFRRGIHPPVSGSYNNHFYHQGMGCCIRAEIWACLAAGDPG  135


>gi|218677225|ref|YP_002396044.1| zinc protease [Vibrio splendidus LGP32]
 gi|218325493|emb|CAV27670.1| zinc protease [Vibrio splendidus LGP32]
Length=920

 Score = 35.4 bits (80),  Expect = 3.1, Method: Composition-based stats.
 Identities = 26/90 (29%), Positives = 39/90 (44%), Gaps = 3/90 (3%)

Query  54   GPGQLIVLLSSTLLVVGAMAGRGLSVKLSSIAALVVSLLIVALTVWYYKLNVNPPVSAEY  113
            G   L+V  SS   V  +       +++S    L    L   + VWY +   NP V    
Sbjct  476  GNKPLLVTASSAFSVPESQGDIVKQIQVSEDPNLQQWTLSNGIEVWYLR---NPEVGNNV  532

Query  114  GLYFGAAGGVCAVGCSLWAAVSAASPGRRR  143
            G+Y+ + GG  A+  SL+ A+  A P   R
Sbjct  533  GVYYASEGGKSALDPSLFPALEVAIPASNR  562



Lambda     K      H
   0.322    0.136    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 130023393564




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40