BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0916c

Length=99
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15840337|ref|NP_335374.1|  PE family protein [Mycobacterium tu...   191    3e-47
gi|254231224|ref|ZP_04924551.1|  PE family protein [Mycobacterium...   182    1e-44
gi|289749440|ref|ZP_06508818.1|  LOW QUALITY PROTEIN: PE family p...   137    4e-31
gi|342861310|ref|ZP_08717958.1|  hypothetical protein MCOL_20601 ...  98.2    4e-19
gi|333989643|ref|YP_004522257.1|  PE-PGRS family protein [Mycobac...  91.7    3e-17
gi|240172899|ref|ZP_04751558.1|  PE family protein [Mycobacterium...  90.9    6e-17
gi|342861305|ref|ZP_08717953.1|  hypothetical protein MCOL_20576 ...  89.7    1e-16
gi|15843089|ref|NP_338126.1|  PE family protein [Mycobacterium tu...  89.0    2e-16
gi|240169038|ref|ZP_04747697.1|  hypothetical protein MkanA1_0697...  88.2    3e-16
gi|296164779|ref|ZP_06847341.1|  PE family protein [Mycobacterium...  87.4    6e-16
gi|31794651|ref|NP_857144.1|  PE family protein [Mycobacterium bo...  87.0    8e-16
gi|254775399|ref|ZP_05216915.1|  hypothetical protein MaviaA2_121...  86.7    1e-15
gi|296170606|ref|ZP_06852185.1|  PE family protein [Mycobacterium...  86.7    1e-15
gi|296164186|ref|ZP_06846786.1|  PE family protein [Mycobacterium...  85.1    3e-15
gi|254820293|ref|ZP_05225294.1|  hypothetical protein MintA_10211...  85.1    3e-15
gi|183982677|ref|YP_001850968.1|  PE family protein, PE19_1 [Myco...  85.1    3e-15
gi|118618471|ref|YP_906803.1|  PE family protein [Mycobacterium u...  84.7    4e-15
gi|41407605|ref|NP_960441.1|  hypothetical protein MAP1507 [Mycob...  83.6    9e-15
gi|333991171|ref|YP_004523785.1|  PE-PGRS family protein [Mycobac...  83.2    1e-14
gi|183984754|ref|YP_001853045.1|  PE-PGRS family protein [Mycobac...  82.8    2e-14
gi|296165761|ref|ZP_06848275.1|  PE family protein [Mycobacterium...  81.6    4e-14
gi|183982680|ref|YP_001850971.1|  PE family protein, PE19 [Mycoba...  81.3    4e-14
gi|118618467|ref|YP_906799.1|  PE family protein [Mycobacterium u...  81.3    5e-14
gi|333989636|ref|YP_004522250.1|  PE family protein PE8 [Mycobact...  80.1    9e-14
gi|336460536|gb|EGO39429.1|  PE family protein [Mycobacterium avi...  78.6    3e-13
gi|15841256|ref|NP_336293.1|  PE family protein [Mycobacterium tu...  78.6    3e-13
gi|183981962|ref|YP_001850253.1|  PE family protein [Mycobacteriu...  77.8    6e-13
gi|240173524|ref|ZP_04752182.1|  PE family protein, PE19_1 [Mycob...  77.8    6e-13
gi|183985086|ref|YP_001853377.1|  PE family protein, PE32 [Mycoba...  77.4    6e-13
gi|41410242|ref|NP_963078.1|  hypothetical protein MAP4144 [Mycob...  77.0    9e-13
gi|118619370|ref|YP_907702.1|  PE family protein [Mycobacterium u...  76.6    1e-12
gi|118465345|ref|YP_882101.1|  PE family protein [Mycobacterium a...  76.3    1e-12
gi|240173303|ref|ZP_04751961.1|  PE family protein [Mycobacterium...  75.9    2e-12
gi|254364620|ref|ZP_04980666.1|  PE family protein [Mycobacterium...  75.5    3e-12
gi|342858829|ref|ZP_08715483.1|  hypothetical protein MCOL_08133 ...  75.1    3e-12
gi|118619579|ref|YP_907911.1|  PE family protein [Mycobacterium u...  75.1    3e-12
gi|333989806|ref|YP_004522420.1|  PE family protein PE19 [Mycobac...  74.7    4e-12
gi|333990542|ref|YP_004523156.1|  PE-PGRS family protein [Mycobac...  74.7    4e-12
gi|254775390|ref|ZP_05216906.1|  hypothetical protein MaviaA2_120...  74.7    4e-12
gi|296165819|ref|ZP_06848318.1|  PE family protein [Mycobacterium...  74.3    5e-12
gi|240172414|ref|ZP_04751073.1|  PE family protein, PE19_1 [Mycob...  73.9    6e-12
gi|254365420|ref|ZP_04981465.1|  PE family protein [Mycobacterium...  73.9    7e-12
gi|15841261|ref|NP_336298.1|  PE family protein [Mycobacterium tu...  73.6    1e-11
gi|31792979|ref|NP_855472.1|  PE family protein [Mycobacterium bo...  73.2    1e-11
gi|342861297|ref|ZP_08717945.1|  hypothetical protein MCOL_20536 ...  72.4    2e-11
gi|333992874|ref|YP_004525488.1|  PE-PGRS family protein [Mycobac...  71.6    4e-11
gi|41407612|ref|NP_960448.1|  hypothetical protein MAP1514 [Mycob...  71.2    4e-11
gi|340625955|ref|YP_004744407.1|  PE-PGRS family protein [Mycobac...  70.9    6e-11
gi|183984518|ref|YP_001852809.1|  PE-PGRS family protein [Mycobac...  70.5    8e-11
gi|240170799|ref|ZP_04749458.1|  PE-PGRS family protein [Mycobact...  70.5    9e-11


>gi|15840337|ref|NP_335374.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|31792104|ref|NP_854597.1| PE family protein [Mycobacterium bovis AF2122/97]
 gi|57116796|ref|YP_177766.1| PE family protein [Mycobacterium tuberculosis H37Rv]
 75 more sequence titles
 Length=99

 Score =  191 bits (485),  Expect = 3e-47, Method: Compositional matrix adjust.
 Identities = 99/99 (100%), Positives = 99/99 (100%), Gaps = 0/99 (0%)

Query  1   MSFVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTK  60
           MSFVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTK
Sbjct  1   MSFVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTK  60

Query  61  HYRVVSKPAALVHGMFVALPAATADAYATTEAVNVVATG  99
           HYRVVSKPAALVHGMFVALPAATADAYATTEAVNVVATG
Sbjct  61  HYRVVSKPAALVHGMFVALPAATADAYATTEAVNVVATG  99


>gi|254231224|ref|ZP_04924551.1| PE family protein [Mycobacterium tuberculosis C]
 gi|124600283|gb|EAY59293.1| PE family protein [Mycobacterium tuberculosis C]
Length=96

 Score =  182 bits (463),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 95/96 (99%), Positives = 96/96 (100%), Gaps = 0/96 (0%)

Query  4   VTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTKHYR  63
           +TIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTKHYR
Sbjct  1   MTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTKHYR  60

Query  64  VVSKPAALVHGMFVALPAATADAYATTEAVNVVATG  99
           VVSKPAALVHGMFVALPAATADAYATTEAVNVVATG
Sbjct  61  VVSKPAALVHGMFVALPAATADAYATTEAVNVVATG  96


>gi|289749440|ref|ZP_06508818.1| LOW QUALITY PROTEIN: PE family protein [Mycobacterium tuberculosis 
T92]
 gi|289690027|gb|EFD57456.1| LOW QUALITY PROTEIN: PE family protein [Mycobacterium tuberculosis 
T92]
Length=100

 Score =  137 bits (346),  Expect = 4e-31, Method: Compositional matrix adjust.
 Identities = 71/71 (100%), Positives = 71/71 (100%), Gaps = 0/71 (0%)

Query  1   MSFVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTK  60
           MSFVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTK
Sbjct  1   MSFVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTK  60

Query  61  HYRVVSKPAAL  71
           HYRVVSKPAAL
Sbjct  61  HYRVVSKPAAL  71


>gi|342861310|ref|ZP_08717958.1| hypothetical protein MCOL_20601 [Mycobacterium colombiense CECT 
3035]
 gi|342131210|gb|EGT84491.1| hypothetical protein MCOL_20601 [Mycobacterium colombiense CECT 
3035]
Length=99

 Score = 98.2 bits (243),  Expect = 4e-19, Method: Compositional matrix adjust.
 Identities = 56/99 (57%), Positives = 71/99 (72%), Gaps = 0/99 (0%)

Query  1   MSFVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTK  60
           MSFVT QP  LAAA G+L TIG+ +SA+N A  APTTGV+P AA++VS LTAA+F AH +
Sbjct  1   MSFVTTQPEALAAAAGNLQTIGSTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHGQ  60

Query  61  HYRVVSKPAALVHGMFVALPAATADAYATTEAVNVVATG  99
            Y+ VS  AA +H MFV   + ++ +YA TEA N  ATG
Sbjct  61  MYQAVSAQAAAIHEMFVNTLSTSSGSYAVTEAANAAATG  99


>gi|333989643|ref|YP_004522257.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
 gi|333485611|gb|AEF35003.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
Length=99

 Score = 91.7 bits (226),  Expect = 3e-17, Method: Compositional matrix adjust.
 Identities = 47/87 (55%), Positives = 62/87 (72%), Gaps = 0/87 (0%)

Query  1   MSFVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTK  60
           MSFVT QP  LAAA G+L  IG+A++A+N A  APTTGV+P AA++VS LTAA+F  H  
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGSALNAQNAAASAPTTGVVPAAADEVSALTAAQFATHAT  60

Query  61  HYRVVSKPAALVHGMFVALPAATADAY  87
            Y+ V+  AA +H MFVA    +A++Y
Sbjct  61  LYQSVAAQAAAIHEMFVATLNGSAESY  87


>gi|240172899|ref|ZP_04751558.1| PE family protein [Mycobacterium kansasii ATCC 12478]
Length=99

 Score = 90.9 bits (224),  Expect = 6e-17, Method: Compositional matrix adjust.
 Identities = 49/87 (57%), Positives = 61/87 (71%), Gaps = 0/87 (0%)

Query  1   MSFVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTK  60
           M+FV  QP  LAAA G+L  IG+AVSA+N A  A TT V P AA+ VS LTAARF+AH +
Sbjct  1   MTFVVTQPETLAAAAGNLQEIGSAVSAQNVAASAHTTSVTPAAADQVSALTAARFSAHAQ  60

Query  61  HYRVVSKPAALVHGMFVALPAATADAY  87
            Y+VVS  AA +H  FVA   A+A++Y
Sbjct  61  VYQVVSAQAAAIHQAFVAALTASANSY  87


>gi|342861305|ref|ZP_08717953.1| hypothetical protein MCOL_20576 [Mycobacterium colombiense CECT 
3035]
 gi|342131205|gb|EGT84486.1| hypothetical protein MCOL_20576 [Mycobacterium colombiense CECT 
3035]
Length=99

 Score = 89.7 bits (221),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 46/77 (60%), Positives = 57/77 (75%), Gaps = 0/77 (0%)

Query  1   MSFVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTK  60
           MSFVT QP  LAAA G+L  IG+ +SA+N A  APTTGV+P AA++VS LTAA+F AH +
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGSTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  HYRVVSKPAALVHGMFV  77
            Y+ VS  AA +H MFV
Sbjct  61  MYQAVSAQAAAIHEMFV  77


>gi|15843089|ref|NP_338126.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|57117110|ref|YP_177975.1| PE family protein [Mycobacterium tuberculosis H37Rv]
 gi|121639395|ref|YP_979619.1| PE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 75 more sequence titles
 Length=98

 Score = 89.0 bits (219),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 49/99 (50%), Positives = 64/99 (65%), Gaps = 1/99 (1%)

Query  1   MSFVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTK  60
           MSF T QP +LAAA G+L ++G  + A N A   PTTGV+PPAA++VS+L A +F  H  
Sbjct  1   MSF-TAQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAA  59

Query  61  HYRVVSKPAALVHGMFVALPAATADAYATTEAVNVVATG  99
            Y+  S  AA++H  FV   A +A +YA TEA N V TG
Sbjct  60  TYQTASAKAAVIHEQFVTTLATSASSYADTEAANAVVTG  98


>gi|240169038|ref|ZP_04747697.1| hypothetical protein MkanA1_06979 [Mycobacterium kansasii ATCC 
12478]
Length=99

 Score = 88.2 bits (217),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 48/87 (56%), Positives = 61/87 (71%), Gaps = 0/87 (0%)

Query  1   MSFVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTK  60
           MSF+T QP VLAAA  +L ++G A+SA N+A  APTTGVLPPAA++VS L A +F AH  
Sbjct  1   MSFLTAQPDVLAAAAANLGSVGAALSAGNSAAAAPTTGVLPPAADEVSALVAVQFAAHAA  60

Query  61  HYRVVSKPAALVHGMFVALPAATADAY  87
            Y+ VS  AA +H   VA  AA+A +Y
Sbjct  61  TYQAVSARAAGIHDQLVATLAASAGSY  87


>gi|296164779|ref|ZP_06847341.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295899880|gb|EFG79324.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=99

 Score = 87.4 bits (215),  Expect = 6e-16, Method: Compositional matrix adjust.
 Identities = 54/99 (55%), Positives = 71/99 (72%), Gaps = 0/99 (0%)

Query  1   MSFVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTK  60
           MSFVT QP  L+AA G L +IG+A++A+N A  APTTGV+P AA++VS LTAA+F AH +
Sbjct  1   MSFVTTQPEALSAAAGSLQSIGSALNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  HYRVVSKPAALVHGMFVALPAATADAYATTEAVNVVATG  99
            Y+ VS  AA +H MFV   + ++ +YA TEA N  ATG
Sbjct  61  MYQAVSAQAAAIHEMFVNTLSMSSGSYAVTEAANAAATG  99


>gi|31794651|ref|NP_857144.1| PE family protein [Mycobacterium bovis AF2122/97]
 gi|31620248|emb|CAD95691.1| PE FAMILY PROTEIN [Mycobacterium bovis AF2122/97]
Length=98

 Score = 87.0 bits (214),  Expect = 8e-16, Method: Compositional matrix adjust.
 Identities = 48/99 (49%), Positives = 63/99 (64%), Gaps = 1/99 (1%)

Query  1   MSFVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTK  60
           MSF T QP +LAAA G+L ++G  +   N A   PTTGV+PPAA++VS+L A +F  H  
Sbjct  1   MSF-TAQPEMLAAAAGELRSLGATLKVSNAAAAVPTTGVVPPAADEVSLLLATQFRTHAA  59

Query  61  HYRVVSKPAALVHGMFVALPAATADAYATTEAVNVVATG  99
            Y+  S  AA++H  FV   A +A +YA TEA N V TG
Sbjct  60  TYQTASAKAAVIHEQFVTTLATSASSYADTEAANAVVTG  98


>gi|254775399|ref|ZP_05216915.1| hypothetical protein MaviaA2_12121 [Mycobacterium avium subsp. 
avium ATCC 25291]
 gi|212595819|gb|ACJ35525.1| PE7 [Mycobacterium avium subsp. avium]
 gi|336457654|gb|EGO36658.1| PE family protein [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=99

 Score = 86.7 bits (213),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 45/77 (59%), Positives = 56/77 (73%), Gaps = 0/77 (0%)

Query  1   MSFVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTK  60
           MSFVT QP  LAAA G+L  IG+ +SA+N A  APTTGV+P AA++VS LTAA+F AH +
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGSTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  HYRVVSKPAALVHGMFV  77
            Y+ VS  AA +H  FV
Sbjct  61  MYQAVSAQAAAIHEAFV  77


>gi|296170606|ref|ZP_06852185.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295894738|gb|EFG74468.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=99

 Score = 86.7 bits (213),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 45/77 (59%), Positives = 56/77 (73%), Gaps = 0/77 (0%)

Query  1   MSFVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTK  60
           MSFVT QP  LAAA G+L  IG+ +SA+N A  APTTGV+P AA++VS LTAA+F AH +
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGSTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  HYRVVSKPAALVHGMFV  77
            Y+ VS  AA +H  FV
Sbjct  61  MYQAVSAQAAAIHEAFV  77


>gi|296164186|ref|ZP_06846786.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295900461|gb|EFG79867.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=99

 Score = 85.1 bits (209),  Expect = 3e-15, Method: Compositional matrix adjust.
 Identities = 50/99 (51%), Positives = 63/99 (64%), Gaps = 0/99 (0%)

Query  1   MSFVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTK  60
           M  VT+ P +L AA G L  IG+A+SA N    APTTGV+P AA++VS LTA +F AH +
Sbjct  1   MFSVTVDPQMLTAAAGTLQGIGSAMSAENAPAAAPTTGVVPAAADEVSALTALQFAAHAQ  60

Query  61  HYRVVSKPAALVHGMFVALPAATADAYATTEAVNVVATG  99
            Y+ VS  AA +H MF      +AD+YA TEA N  A G
Sbjct  61  MYQAVSAQAAAIHEMFANTLGVSADSYAVTEAANAAAAG  99


>gi|254820293|ref|ZP_05225294.1| hypothetical protein MintA_10211 [Mycobacterium intracellulare 
ATCC 13950]
 gi|212596298|gb|ACJ35567.1| PE7 [Mycobacterium intracellulare ATCC 13950]
Length=99

 Score = 85.1 bits (209),  Expect = 3e-15, Method: Compositional matrix adjust.
 Identities = 45/87 (52%), Positives = 60/87 (69%), Gaps = 0/87 (0%)

Query  1   MSFVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTK  60
           MSFVT QP  LAAA G+L  IG+ +SA+N A  APTTGV+P AA++VS LTAA+F AH +
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGSTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  HYRVVSKPAALVHGMFVALPAATADAY  87
            Y+ VS  A  +H  FV   + ++ +Y
Sbjct  61  MYQAVSAQAQAIHEAFVNTLSTSSGSY  87


>gi|183982677|ref|YP_001850968.1| PE family protein, PE19_1 [Mycobacterium marinum M]
 gi|183176003|gb|ACC41113.1| PE family protein, PE19_1 [Mycobacterium marinum M]
Length=99

 Score = 85.1 bits (209),  Expect = 3e-15, Method: Compositional matrix adjust.
 Identities = 42/77 (55%), Positives = 55/77 (72%), Gaps = 0/77 (0%)

Query  1   MSFVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTK  60
           MS+VT QP  LAAA   L  IG+ +S++N A  APTTGV+P AA++VS LTAA+F AH +
Sbjct  1   MSYVTTQPEALAAAASTLQGIGSTLSSQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  HYRVVSKPAALVHGMFV  77
            Y+ VS  A+ +H MFV
Sbjct  61  MYQAVSAQASAIHEMFV  77


>gi|118618471|ref|YP_906803.1| PE family protein [Mycobacterium ulcerans Agy99]
 gi|118570581|gb|ABL05332.1| PE family protein [Mycobacterium ulcerans Agy99]
Length=99

 Score = 84.7 bits (208),  Expect = 4e-15, Method: Compositional matrix adjust.
 Identities = 42/77 (55%), Positives = 55/77 (72%), Gaps = 0/77 (0%)

Query  1   MSFVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTK  60
           MS+VT QP  LAAA   L  IG+ +S++N A  APTTGV+P AA++VS LTAA+F AH +
Sbjct  1   MSYVTTQPEALAAAASTLQGIGSTLSSQNAAAAAPTTGVVPAAADEVSALTAAQFVAHAQ  60

Query  61  HYRVVSKPAALVHGMFV  77
            Y+ VS  A+ +H MFV
Sbjct  61  MYQAVSAQASAIHEMFV  77


>gi|41407605|ref|NP_960441.1| hypothetical protein MAP1507 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41395958|gb|AAS03824.1| PE_4 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|225698451|gb|ACO07343.1| PE protein [Mycobacterium avium subsp. paratuberculosis]
Length=99

 Score = 83.6 bits (205),  Expect = 9e-15, Method: Compositional matrix adjust.
 Identities = 44/77 (58%), Positives = 55/77 (72%), Gaps = 0/77 (0%)

Query  1   MSFVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTK  60
           MSFVT QP  LAAA G+L  IG  +SA+N A  APTTGV+P AA++VS LTAA+F A+ +
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGWTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAYAQ  60

Query  61  HYRVVSKPAALVHGMFV  77
            Y+ VS  AA +H  FV
Sbjct  61  MYQAVSAQAAAIHEAFV  77


>gi|333991171|ref|YP_004523785.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
 gi|333487139|gb|AEF36531.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
Length=99

 Score = 83.2 bits (204),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 43/87 (50%), Positives = 57/87 (66%), Gaps = 0/87 (0%)

Query  1   MSFVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTK  60
           MSF+T  P  L AA   L + G A++++NTA   PTTGVLPPAA+++S + AARFT   +
Sbjct  1   MSFLTADPEALRAAADCLSSTGGALASQNTAAQVPTTGVLPPAADEISAMLAARFTTQAQ  60

Query  61  HYRVVSKPAALVHGMFVALPAATADAY  87
           HY+ VS  AA +H MFVA    +A  Y
Sbjct  61  HYQQVSAQAAAIHEMFVATLNGSASTY  87


>gi|183984754|ref|YP_001853045.1| PE-PGRS family protein [Mycobacterium marinum M]
 gi|183178080|gb|ACC43190.1| PE-PGRS family protein [Mycobacterium marinum M]
Length=99

 Score = 82.8 bits (203),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 46/97 (48%), Positives = 60/97 (62%), Gaps = 0/97 (0%)

Query  1   MSFVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTK  60
           M+FVT  P  L AA  +L ++G  +SA N A  AP TGV+P AA++VS LTAA F AH  
Sbjct  1   MAFVTSAPEALTAAALNLHSVGAGMSAGNAAAMAPITGVVPAAADEVSALTAAHFAAHGA  60

Query  61  HYRVVSKPAALVHGMFVALPAATADAYATTEAVNVVA  97
            Y+ +S  A  +H MFV    A+  +YA TEA N +A
Sbjct  61  MYQTLSAQAQAIHEMFVTTLQASGGSYAETEAANAIA  97


>gi|296165761|ref|ZP_06848275.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898886|gb|EFG78378.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=99

 Score = 81.6 bits (200),  Expect = 4e-14, Method: Compositional matrix adjust.
 Identities = 47/97 (49%), Positives = 64/97 (66%), Gaps = 0/97 (0%)

Query  1   MSFVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTK  60
           MSFVT QP +LAA   DL  IG+A++ +N A    TTGV+P  A++VS LTA +F AH +
Sbjct  1   MSFVTAQPEMLAATANDLRGIGSALAVQNAAASRSTTGVIPAGADEVSALTAVQFAAHAQ  60

Query  61  HYRVVSKPAALVHGMFVALPAATADAYATTEAVNVVA  97
            Y+ VS  AA  + +FV   A +A +YA TEA+N +A
Sbjct  61  MYQAVSAQAAAAYDLFVRTLAVSAGSYAATEAINTIA  97


>gi|183982680|ref|YP_001850971.1| PE family protein, PE19 [Mycobacterium marinum M]
 gi|183176006|gb|ACC41116.1| PE family protein, PE19 [Mycobacterium marinum M]
Length=99

 Score = 81.3 bits (199),  Expect = 4e-14, Method: Compositional matrix adjust.
 Identities = 48/87 (56%), Positives = 61/87 (71%), Gaps = 0/87 (0%)

Query  1   MSFVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTK  60
           MSFVT QP  LAAA  +L  IGT +SA+N A  APTTGV+P AA++VS LTAA+F AH +
Sbjct  1   MSFVTTQPEALAAAAANLQGIGTTMSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  HYRVVSKPAALVHGMFVALPAATADAY  87
            Y+ VS  AA +H MFV   A ++ +Y
Sbjct  61  MYQAVSAQAAAIHEMFVNTLATSSGSY  87


>gi|118618467|ref|YP_906799.1| PE family protein [Mycobacterium ulcerans Agy99]
 gi|118570577|gb|ABL05328.1| PE family protein [Mycobacterium ulcerans Agy99]
Length=99

 Score = 81.3 bits (199),  Expect = 5e-14, Method: Compositional matrix adjust.
 Identities = 47/87 (55%), Positives = 61/87 (71%), Gaps = 0/87 (0%)

Query  1   MSFVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTK  60
           MSFVT QP  LAAA  +L  IGT +SA+N A  APTTGV+P AA++VS LTAA+F  H +
Sbjct  1   MSFVTTQPEALAAAAANLQGIGTTMSAQNAAAAAPTTGVVPAAADEVSALTAAQFAGHAQ  60

Query  61  HYRVVSKPAALVHGMFVALPAATADAY  87
            Y+ VS  AA++H MFV   A ++ +Y
Sbjct  61  MYQAVSAQAAVIHEMFVNTLATSSGSY  87


>gi|333989636|ref|YP_004522250.1| PE family protein PE8 [Mycobacterium sp. JDM601]
 gi|333485604|gb|AEF34996.1| PE family protein PE8 [Mycobacterium sp. JDM601]
Length=273

 Score = 80.1 bits (196),  Expect = 9e-14, Method: Compositional matrix adjust.
 Identities = 42/91 (47%), Positives = 60/91 (66%), Gaps = 0/91 (0%)

Query  1   MSFVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTK  60
           MSFVT  P  +AA   +L  IG+A++A+NTA  APTTG+ P  A++VSVL A +F A+ +
Sbjct  1   MSFVTTHPEAMAATASNLQAIGSAMTAQNTAAAAPTTGIAPAGADEVSVLQATQFAAYGQ  60

Query  61  HYRVVSKPAALVHGMFVALPAATADAYATTE  91
            Y+ +S  AA +  MFV     +AD+Y +TE
Sbjct  61  LYQQISAQAAAIQEMFVNTLRTSADSYGSTE  91


>gi|336460536|gb|EGO39429.1| PE family protein [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=143

 Score = 78.6 bits (192),  Expect = 3e-13, Method: Compositional matrix adjust.
 Identities = 45/94 (48%), Positives = 56/94 (60%), Gaps = 0/94 (0%)

Query  1   MSFVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTK  60
           MSFV   P  +AAA  DL  IG+ +S+ NTA   PT+GVL P A++VS   AA F AH++
Sbjct  4   MSFVQATPEFVAAAATDLARIGSTISSANTAALGPTSGVLAPGADEVSASIAALFDAHSQ  63

Query  61  HYRVVSKPAALVHGMFVALPAATADAYATTEAVN  94
            Y+ +S  AA  H  FV L    A  YA TEA N
Sbjct  64  VYQALSAQAAAFHSQFVQLMNGGALQYAVTEAAN  97


>gi|15841256|ref|NP_336293.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|31792976|ref|NP_855469.1| PE family protein [Mycobacterium bovis AF2122/97]
 gi|57116910|ref|YP_177834.1| PE family protein [Mycobacterium tuberculosis H37Rv]
 60 more sequence titles
 Length=99

 Score = 78.6 bits (192),  Expect = 3e-13, Method: Compositional matrix adjust.
 Identities = 45/77 (59%), Positives = 56/77 (73%), Gaps = 0/77 (0%)

Query  1   MSFVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTK  60
           MSFVT QP  LAAA G L  IG+A++A+N A   PTTGV+P AA++VS LTAA+F AH +
Sbjct  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  HYRVVSKPAALVHGMFV  77
            Y+ VS  AA +H MFV
Sbjct  61  IYQAVSAQAAAIHEMFV  77


>gi|183981962|ref|YP_001850253.1| PE family protein [Mycobacterium marinum M]
 gi|183175288|gb|ACC40398.1| PE family protein [Mycobacterium marinum M]
Length=267

 Score = 77.8 bits (190),  Expect = 6e-13, Method: Compositional matrix adjust.
 Identities = 47/95 (50%), Positives = 58/95 (62%), Gaps = 1/95 (1%)

Query  1   MSFVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTT-GVLPPAANDVSVLTAARFTAHT  59
           MSF+T QP  LAAA G L TIG  + A N A  APTT GV+P AA++VS L A+ FTA+ 
Sbjct  1   MSFLTTQPEELAAAAGKLETIGATMDAENVAAVAPTTTGVIPAAADEVSALQASLFTAYG  60

Query  60  KHYRVVSKPAALVHGMFVALPAATADAYATTEAVN  94
             Y+ VS  AA ++ MFV     +A  YA  E  N
Sbjct  61  TLYQQVSAEAATLYDMFVRTLGVSAGTYAAAETAN  95


>gi|240173524|ref|ZP_04752182.1| PE family protein, PE19_1 [Mycobacterium kansasii ATCC 12478]
Length=99

 Score = 77.8 bits (190),  Expect = 6e-13, Method: Compositional matrix adjust.
 Identities = 48/87 (56%), Positives = 60/87 (69%), Gaps = 0/87 (0%)

Query  1   MSFVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTK  60
           MSFVT QP  LAAA   L  IGT +SA+N A  APTTGV+P AA++VS LTAA+F AH +
Sbjct  1   MSFVTTQPEALAAAASSLQGIGTTMSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  HYRVVSKPAALVHGMFVALPAATADAY  87
            Y+ VS  AA +H MFV   A ++ +Y
Sbjct  61  MYQAVSAQAAAIHEMFVNTLATSSGSY  87


>gi|183985086|ref|YP_001853377.1| PE family protein, PE32 [Mycobacterium marinum M]
 gi|183178412|gb|ACC43522.1| PE family protein, PE32 [Mycobacterium marinum M]
Length=99

 Score = 77.4 bits (189),  Expect = 6e-13, Method: Compositional matrix adjust.
 Identities = 45/97 (47%), Positives = 60/97 (62%), Gaps = 0/97 (0%)

Query  1   MSFVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTK  60
           MS VT QP ++A    +L  I +A  A +    APTTGV+PPAA+ VS+LTAA+F AH +
Sbjct  1   MSHVTAQPEIVAGVALELQAINSAARAGDEVAVAPTTGVVPPAADLVSMLTAAQFAAHAR  60

Query  61  HYRVVSKPAALVHGMFVALPAATADAYATTEAVNVVA  97
            Y+ +S  AA V    V +   +A +YA TEA N VA
Sbjct  61  VYQAISAQAAAVQDQLVTVLGISAGSYAATEAANTVA  97


>gi|41410242|ref|NP_963078.1| hypothetical protein MAP4144 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41399076|gb|AAS06694.1| hypothetical protein MAP_4144 [Mycobacterium avium subsp. paratuberculosis 
K-10]
Length=205

 Score = 77.0 bits (188),  Expect = 9e-13, Method: Compositional matrix adjust.
 Identities = 45/94 (48%), Positives = 56/94 (60%), Gaps = 0/94 (0%)

Query  1   MSFVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTK  60
           MSFV   P  +AAA  DL  IG+ +S+ NTA   PT+GVL P A++VS   AA F AH++
Sbjct  1   MSFVQATPEFVAAAATDLARIGSTISSANTAALGPTSGVLAPGADEVSASIAALFDAHSQ  60

Query  61  HYRVVSKPAALVHGMFVALPAATADAYATTEAVN  94
            Y+ +S  AA  H  FV L    A  YA TEA N
Sbjct  61  VYQALSAQAAAFHSQFVQLMNGGALQYAVTEAAN  94


>gi|118619370|ref|YP_907702.1| PE family protein [Mycobacterium ulcerans Agy99]
 gi|118571480|gb|ABL06231.1| PE family protein [Mycobacterium ulcerans Agy99]
Length=99

 Score = 76.6 bits (187),  Expect = 1e-12, Method: Compositional matrix adjust.
 Identities = 45/97 (47%), Positives = 60/97 (62%), Gaps = 0/97 (0%)

Query  1   MSFVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTK  60
           MS VT QP ++A    +L  I +A  A +    APTTGV+PPAA+ VS+LTAA+F AH +
Sbjct  1   MSHVTAQPEIVAGVALELQAINSAARAGDEVAVAPTTGVVPPAADLVSMLTAAQFAAHAR  60

Query  61  HYRVVSKPAALVHGMFVALPAATADAYATTEAVNVVA  97
            Y+ +S  AA V    V +   +A +YA TEA N VA
Sbjct  61  VYQAISAQAAAVQDELVTVLGISAGSYAATEAANTVA  97


>gi|118465345|ref|YP_882101.1| PE family protein [Mycobacterium avium 104]
 gi|118166632|gb|ABK67529.1| PE family protein [Mycobacterium avium 104]
 gi|212595805|gb|ACJ35524.1| PE6 [Mycobacterium avium subsp. avium]
Length=99

 Score = 76.3 bits (186),  Expect = 1e-12, Method: Compositional matrix adjust.
 Identities = 44/91 (49%), Positives = 57/91 (63%), Gaps = 0/91 (0%)

Query  1   MSFVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTK  60
           M +VT QP  + AA   L  IGTA++A+  A  AP TGV+P AA+ VS+L AARF  H +
Sbjct  1   MMYVTAQPEAMNAAADRLQQIGTALAAQTGANSAPMTGVVPAAADPVSLLAAARFAQHGQ  60

Query  61  HYRVVSKPAALVHGMFVALPAATADAYATTE  91
            ++ VS  AA VH MFV     +A +YA TE
Sbjct  61  AFQAVSAEAAAVHEMFVTTLQTSAGSYAGTE  91


>gi|240173303|ref|ZP_04751961.1| PE family protein [Mycobacterium kansasii ATCC 12478]
Length=146

 Score = 75.9 bits (185),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 39/77 (51%), Positives = 51/77 (67%), Gaps = 0/77 (0%)

Query  1   MSFVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTK  60
           MSF+T QP  LAAA G L TIG  + A N A   PTTGV+P AA++VS+L A+ FTA+  
Sbjct  1   MSFLTTQPDELAAAAGKLQTIGATMEAENVAAAVPTTGVIPAAADEVSMLQASMFTAYGS  60

Query  61  HYRVVSKPAALVHGMFV  77
            Y+ +S  AA ++ M V
Sbjct  61  LYQQISAEAAAMYEMLV  77


>gi|254364620|ref|ZP_04980666.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
 gi|134150134|gb|EBA42179.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
Length=99

 Score = 75.5 bits (184),  Expect = 3e-12, Method: Compositional matrix adjust.
 Identities = 44/77 (58%), Positives = 55/77 (72%), Gaps = 0/77 (0%)

Query  1   MSFVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTK  60
           M FVT QP  LAAA G L  IG+A++A+N A   PTTGV+P AA++VS LTAA+F AH +
Sbjct  1   MPFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  HYRVVSKPAALVHGMFV  77
            Y+ VS  AA +H MFV
Sbjct  61  IYQAVSAQAAAIHEMFV  77


>gi|342858829|ref|ZP_08715483.1| hypothetical protein MCOL_08133 [Mycobacterium colombiense CECT 
3035]
 gi|342133070|gb|EGT86273.1| hypothetical protein MCOL_08133 [Mycobacterium colombiense CECT 
3035]
Length=150

 Score = 75.1 bits (183),  Expect = 3e-12, Method: Compositional matrix adjust.
 Identities = 40/79 (51%), Positives = 50/79 (64%), Gaps = 0/79 (0%)

Query  1   MSFVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTK  60
           MSFV   P  +AAA GDL  IGT +S+ NTA   PT+GVL P A++VS   AA F AH++
Sbjct  1   MSFVQATPEFVAAAAGDLARIGTTISSANTAAFGPTSGVLAPGADEVSASIAALFDAHSQ  60

Query  61  HYRVVSKPAALVHGMFVAL  79
            Y+ +S  AA  H  FV L
Sbjct  61  VYQALSAQAAAFHSQFVQL  79


>gi|118619579|ref|YP_907911.1| PE family protein [Mycobacterium ulcerans Agy99]
 gi|183984578|ref|YP_001852869.1| PE family protein [Mycobacterium marinum M]
 gi|118571689|gb|ABL06440.1| PE family protein [Mycobacterium ulcerans Agy99]
 gi|183177904|gb|ACC43014.1| PE family protein [Mycobacterium marinum M]
Length=99

 Score = 75.1 bits (183),  Expect = 3e-12, Method: Compositional matrix adjust.
 Identities = 48/87 (56%), Positives = 59/87 (68%), Gaps = 0/87 (0%)

Query  1   MSFVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTK  60
           MSFV  QP  LAAA G L  +G+AVSA++ A  APTT V P AA+ VS LTAARF+AH +
Sbjct  1   MSFVVTQPERLAAAAGSLQEVGSAVSAQSAAAVAPTTSVAPAAADQVSALTAARFSAHAQ  60

Query  61  HYRVVSKPAALVHGMFVALPAATADAY  87
            Y++VS  A  +H  FVA  AA A +Y
Sbjct  61  LYQMVSAQAVAIHDRFVAALAAGAQSY  87


>gi|333989806|ref|YP_004522420.1| PE family protein PE19 [Mycobacterium sp. JDM601]
 gi|333485774|gb|AEF35166.1| PE family protein PE19 [Mycobacterium sp. JDM601]
Length=99

 Score = 74.7 bits (182),  Expect = 4e-12, Method: Compositional matrix adjust.
 Identities = 46/90 (52%), Positives = 59/90 (66%), Gaps = 2/90 (2%)

Query  1   MSFVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAAND-VSVLTAARFTAHT  59
           MSFV  QP  LA+A  +L  IG+ V+A+N A   PTT VLPPAA D VS LTAA F+AH 
Sbjct  1   MSFVNTQPEALASAASELRGIGSVVAAQNMAAAGPTT-VLPPAAADEVSALTAALFSAHA  59

Query  60  KHYRVVSKPAALVHGMFVALPAATADAYAT  89
           + Y+ VS  AA +H  FV   A ++++YA 
Sbjct  60  QAYQEVSAQAAAIHEAFVRTLALSSESYAA  89


>gi|333990542|ref|YP_004523156.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
 gi|333486510|gb|AEF35902.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
Length=99

 Score = 74.7 bits (182),  Expect = 4e-12, Method: Compositional matrix adjust.
 Identities = 44/87 (51%), Positives = 59/87 (68%), Gaps = 0/87 (0%)

Query  1   MSFVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTK  60
           MSFV  QP  L AA G+L  IG+A+SA+N A   PTTGV+P AA++VS LTAA+F AH  
Sbjct  1   MSFVNTQPEALTAAAGNLAAIGSALSAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAS  60

Query  61  HYRVVSKPAALVHGMFVALPAATADAY  87
            Y+ +S  A  +H  FVA   ++A++Y
Sbjct  61  MYQSISAQAEAIHQAFVATLNSSANSY  87


>gi|254775390|ref|ZP_05216906.1| hypothetical protein MaviaA2_12076 [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=98

 Score = 74.7 bits (182),  Expect = 4e-12, Method: Compositional matrix adjust.
 Identities = 43/89 (49%), Positives = 56/89 (63%), Gaps = 0/89 (0%)

Query  3   FVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTKHY  62
           +VT QP  + AA   L  IGTA++A+  A  AP TGV+P AA+ VS+L AARF  H + +
Sbjct  2   YVTAQPEAMNAAADRLQQIGTALAAQTGANSAPMTGVVPAAADPVSLLAAARFAQHGQAF  61

Query  63  RVVSKPAALVHGMFVALPAATADAYATTE  91
           + VS  AA VH MFV     +A +YA TE
Sbjct  62  QAVSAEAAAVHEMFVTTLQTSAGSYAGTE  90


>gi|296165819|ref|ZP_06848318.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898827|gb|EFG78334.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=99

 Score = 74.3 bits (181),  Expect = 5e-12, Method: Compositional matrix adjust.
 Identities = 51/99 (52%), Positives = 63/99 (64%), Gaps = 0/99 (0%)

Query  1   MSFVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTK  60
           M  VT QP  + AA  D   IG+A+SA N A  AP TGV+P AA++VS LTA +F AH +
Sbjct  1   MMLVTTQPAAMTAAADDAQGIGSAMSAGNVAAAAPRTGVVPAAADEVSGLTALQFAAHAQ  60

Query  61  HYRVVSKPAALVHGMFVALPAATADAYATTEAVNVVATG  99
            Y+ VS  AA VH MF +    +AD+YA TEA N VA G
Sbjct  61  IYQAVSAQAAAVHEMFASTLGVSADSYALTEAANAVAAG  99


>gi|240172414|ref|ZP_04751073.1| PE family protein, PE19_1 [Mycobacterium kansasii ATCC 12478]
Length=281

 Score = 73.9 bits (180),  Expect = 6e-12, Method: Compositional matrix adjust.
 Identities = 45/99 (46%), Positives = 60/99 (61%), Gaps = 0/99 (0%)

Query  1   MSFVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTK  60
           MSFV   P +L AA G L  IG+AVS  N     P  GV+P AA++VS++TAA FTA+ +
Sbjct  1   MSFVITLPEMLMAAVGRLEAIGSAVSTANVTAALPIAGVIPAAADEVSMVTAASFTAYGQ  60

Query  61  HYRVVSKPAALVHGMFVALPAATADAYATTEAVNVVATG  99
            Y+ +S  A L+H  FV     +A++YA TEA N    G
Sbjct  61  LYQAISAEAHLIHEQFVKALGLSANSYAATEAANATHAG  99


>gi|254365420|ref|ZP_04981465.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
 gi|134150933|gb|EBA42978.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
Length=275

 Score = 73.9 bits (180),  Expect = 7e-12, Method: Compositional matrix adjust.
 Identities = 50/95 (53%), Positives = 63/95 (67%), Gaps = 1/95 (1%)

Query  1   MSFVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTT-GVLPPAANDVSVLTAARFTAHT  59
           MSF+T QP  LAAA G L TIG+A+ A+N A  APTT GV+P AA+++SVL A  FTA+ 
Sbjct  1   MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60

Query  60  KHYRVVSKPAALVHGMFVALPAATADAYATTEAVN  94
             Y+ VS  AA V+ +FV     +A  YA TEA N
Sbjct  61  TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAAN  95


>gi|15841261|ref|NP_336298.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|148823006|ref|YP_001287760.1| PE family protein [Mycobacterium tuberculosis F11]
 gi|253799168|ref|YP_003032169.1| PE family protein [Mycobacterium tuberculosis KZN 1435]
 17 more sequence titles
 Length=105

 Score = 73.6 bits (179),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 47/87 (55%), Positives = 61/87 (71%), Gaps = 0/87 (0%)

Query  1   MSFVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTK  60
           MSFVT QP  LAAA  +L  IGT ++A+N A  APTTGV+P AA++VS LTAA+F AH +
Sbjct  7   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  66

Query  61  HYRVVSKPAALVHGMFVALPAATADAY  87
            Y+ VS  AA +H MFV    A++ +Y
Sbjct  67  MYQTVSAQAAAIHEMFVNTLVASSGSY  93


>gi|31792979|ref|NP_855472.1| PE family protein [Mycobacterium bovis AF2122/97]
 gi|57116913|ref|YP_177837.1| PE family protein [Mycobacterium tuberculosis H37Rv]
 gi|121637692|ref|YP_977915.1| PE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 59 more sequence titles
 Length=99

 Score = 73.2 bits (178),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 47/87 (55%), Positives = 61/87 (71%), Gaps = 0/87 (0%)

Query  1   MSFVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTK  60
           MSFVT QP  LAAA  +L  IGT ++A+N A  APTTGV+P AA++VS LTAA+F AH +
Sbjct  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  HYRVVSKPAALVHGMFVALPAATADAY  87
            Y+ VS  AA +H MFV    A++ +Y
Sbjct  61  MYQTVSAQAAAIHEMFVNTLVASSGSY  87


>gi|342861297|ref|ZP_08717945.1| hypothetical protein MCOL_20536 [Mycobacterium colombiense CECT 
3035]
 gi|342131197|gb|EGT84478.1| hypothetical protein MCOL_20536 [Mycobacterium colombiense CECT 
3035]
Length=99

 Score = 72.4 bits (176),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 39/87 (45%), Positives = 56/87 (65%), Gaps = 0/87 (0%)

Query  1   MSFVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTK  60
           M+FVT QP  L  A   L  IG+A++A+N+A  AP TGV P AA++VS+LTAA+F  H +
Sbjct  1   MNFVTAQPESLDIAASRLHEIGSALTAQNSATAAPMTGVAPAAADEVSLLTAAQFARHGQ  60

Query  61  HYRVVSKPAALVHGMFVALPAATADAY  87
            ++ +S  AA +H  FV     +A +Y
Sbjct  61  TFQALSAQAAAIHENFVTTLQVSAGSY  87


>gi|333992874|ref|YP_004525488.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
 gi|333488842|gb|AEF38234.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
Length=95

 Score = 71.6 bits (174),  Expect = 4e-11, Method: Compositional matrix adjust.
 Identities = 43/90 (48%), Positives = 60/90 (67%), Gaps = 0/90 (0%)

Query  8   PVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTKHYRVVSK  67
           P  L A   +L +IG AV+A+NTA   PTTGV+P AA++VS LTAA+F  H + Y+ +SK
Sbjct  5   PEELTATAAELSSIGNAVAAQNTAAAGPTTGVVPAAADEVSALTAAQFARHAQMYQAISK  64

Query  68  PAALVHGMFVALPAATADAYATTEAVNVVA  97
            AA+VH  FV +    A +YA T+A N ++
Sbjct  65  RAAVVHERFVIMLQRNAQSYAATDAANAIS  94


>gi|41407612|ref|NP_960448.1| hypothetical protein MAP1514 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41395965|gb|AAS03831.1| PE_5 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|336457563|gb|EGO36568.1| PE family protein [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=99

 Score = 71.2 bits (173),  Expect = 4e-11, Method: Compositional matrix adjust.
 Identities = 40/87 (46%), Positives = 54/87 (63%), Gaps = 0/87 (0%)

Query  1   MSFVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTK  60
           M +VT QP  + AA   L  IGTA++A+  A  AP TGV+P AA+ VS+L AARF  H +
Sbjct  1   MMYVTAQPEAMNAAADRLQQIGTALAAQTGANSAPMTGVVPAAADPVSLLAAARFAQHGQ  60

Query  61  HYRVVSKPAALVHGMFVALPAATADAY  87
            ++ VS  AA +H MFV     +A +Y
Sbjct  61  AFQAVSAEAAAIHEMFVTTLQTSAGSY  87


>gi|340625955|ref|YP_004744407.1| PE-PGRS family protein [Mycobacterium canettii CIPT 140010059]
 gi|340004145|emb|CCC43283.1| PE-PGRS family protein [Mycobacterium canettii CIPT 140010059]
Length=470

 Score = 70.9 bits (172),  Expect = 6e-11, Method: Compositional matrix adjust.
 Identities = 48/96 (50%), Positives = 61/96 (64%), Gaps = 0/96 (0%)

Query  1   MSFVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTK  60
           MS+V   P  +AAA  DL  IG+ +S  N A  AP T VLP  A++VS   AA F+AH +
Sbjct  1   MSWVIAAPEYVAAAANDLAGIGSTISQANAAAAAPITAVLPAGADEVSAGIAALFSAHAQ  60

Query  61  HYRVVSKPAALVHGMFVALPAATADAYATTEAVNVV  96
            Y+V+S  AAL H  FVAL +A A  YATTEA+N +
Sbjct  61  AYQVLSAQAALFHQQFVALMSAGAGQYATTEALNAL  96


>gi|183984518|ref|YP_001852809.1| PE-PGRS family protein [Mycobacterium marinum M]
 gi|183177844|gb|ACC42954.1| PE-PGRS family protein [Mycobacterium marinum M]
Length=443

 Score = 70.5 bits (171),  Expect = 8e-11, Method: Compositional matrix adjust.
 Identities = 42/87 (49%), Positives = 51/87 (59%), Gaps = 0/87 (0%)

Query  1   MSFVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTK  60
           MSF+T  P  + AA  DL +IGTAVS  N A  APTTGVL   A++VS    A F AH +
Sbjct  1   MSFLTTAPEFVNAAASDLASIGTAVSQANAAALAPTTGVLAAGADEVSAAITALFGAHAQ  60

Query  61  HYRVVSKPAALVHGMFVALPAATADAY  87
            Y+ +S  AA  H  FV L A +A  Y
Sbjct  61  TYQALSAQAATFHAQFVQLMATSAGRY  87


>gi|240170799|ref|ZP_04749458.1| PE-PGRS family protein [Mycobacterium kansasii ATCC 12478]
Length=99

 Score = 70.5 bits (171),  Expect = 9e-11, Method: Compositional matrix adjust.
 Identities = 43/87 (50%), Positives = 58/87 (67%), Gaps = 0/87 (0%)

Query  1   MSFVTIQPVVLAAATGDLPTIGTAVSARNTAVCAPTTGVLPPAANDVSVLTAARFTAHTK  60
           MSFVT +P  L +A G+L +IG+A++A N A  AP TGV+P AA++VS LTAA F AH  
Sbjct  1   MSFVTSEPEALISAAGNLQSIGSAMNASNAAAIAPITGVVPAAADEVSALTAAHFAAHGT  60

Query  61  HYRVVSKPAALVHGMFVALPAATADAY  87
            Y+ VS  AA +H +FV    A+  +Y
Sbjct  61  LYQAVSAQAAAIHELFVTTLGASGGSY  87



Lambda     K      H
   0.318    0.126    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 129711308684




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40