BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0918

Length=158
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15840340|ref|NP_335377.1|  hypothetical protein MT0944 [Mycoba...   315    1e-84
gi|15608058|ref|NP_215433.1|  hypothetical protein Rv0918 [Mycoba...   315    2e-84
gi|31792106|ref|NP_854599.1|  hypothetical protein Mb0942 [Mycoba...   313    8e-84
gi|339630981|ref|YP_004722623.1|  hypothetical protein MAF_09270 ...   299    9e-80
gi|308231671|ref|ZP_07413385.2|  hypothetical protein TMAG_00854 ...   186    1e-45
gi|145221381|ref|YP_001132059.1|  hypothetical protein Mflv_0786 ...   137    5e-31
gi|333988665|ref|YP_004521279.1|  hypothetical protein JDM601_002...   135    2e-30
gi|315441736|ref|YP_004074615.1|  hypothetical protein Mspyr1_004...   131    4e-29
gi|336178777|ref|YP_004584152.1|  hypothetical protein FsymDg_290...   112    3e-23
gi|302343978|ref|YP_003808507.1|  hypothetical protein Deba_2558 ...  80.5    7e-14
gi|302344014|ref|YP_003808543.1|  hypothetical protein Deba_2595 ...  76.3    1e-12
gi|240169137|ref|ZP_04747796.1|  hypothetical protein MkanA1_0747...  73.9    7e-12
gi|154508312|ref|ZP_02043954.1|  hypothetical protein ACTODO_0080...  71.6    4e-11
gi|116620423|ref|YP_822579.1|  hypothetical protein Acid_1300 [Ca...  69.7    1e-10
gi|194336777|ref|YP_002018571.1|  hypothetical protein Ppha_1718 ...  68.6    3e-10
gi|258404534|ref|YP_003197276.1|  hypothetical protein Dret_0400 ...  68.2    4e-10
gi|333990697|ref|YP_004523311.1|  hypothetical protein JDM601_205...  68.2    4e-10
gi|86739879|ref|YP_480279.1|  CopG-like DNA-binding [Frankia sp. ...  67.4    7e-10
gi|296134812|ref|YP_003642054.1|  Protein of unknown function DUF...  65.9    2e-09
gi|315605436|ref|ZP_07880476.1|  conserved hypothetical protein [...  65.5    2e-09
gi|288916910|ref|ZP_06411282.1|  Protein of unknown function DUF1...  65.1    3e-09
gi|94265184|ref|ZP_01288946.1|  conserved hypothetical protein [d...  64.7    4e-09
gi|83648276|ref|YP_436711.1|  hypothetical protein HCH_05628 [Hah...  64.3    5e-09
gi|304311929|ref|YP_003811527.1|  hypothetical protein HDN1F_2300...  64.3    6e-09
gi|220935245|ref|YP_002514144.1|  hypothetical protein Tgr7_2077 ...  63.9    8e-09
gi|158314003|ref|YP_001506511.1|  hypothetical protein Franean1_2...  63.5    8e-09
gi|90425040|ref|YP_533410.1|  hypothetical protein RPC_3552 [Rhod...  62.8    1e-08
gi|294338764|emb|CAZ87098.1|  conserved hypothetical protein; put...  62.8    2e-08
gi|340627803|ref|YP_004746255.1|  hypothetical protein MCAN_28301...  62.8    2e-08
gi|306807392|ref|ZP_07444060.1|  hypothetical protein TMGG_02066 ...  61.2    4e-08
gi|307085503|ref|ZP_07494616.1|  hypothetical protein TMLG_02519 ...  61.2    4e-08
gi|119898317|ref|YP_933530.1|  hypothetical protein azo2026 [Azoa...  61.2    4e-08
gi|15842341|ref|NP_337378.1|  hypothetical protein MT2871 [Mycoba...  61.2    5e-08
gi|110597351|ref|ZP_01385639.1|  conserved hypothetical protein [...  60.8    6e-08
gi|308232248|ref|ZP_07664041.1|  hypothetical protein TMAG_03186 ...  60.8    6e-08
gi|289444352|ref|ZP_06434096.1|  conserved hypothetical protein [...  60.8    7e-08
gi|344201044|ref|YP_004785370.1|  hypothetical protein Acife_2970...  59.7    1e-07
gi|87300639|ref|ZP_01083481.1|  putative cytoplasmic protein [Syn...  59.7    2e-07
gi|333989585|ref|YP_004522199.1|  hypothetical protein JDM601_094...  59.3    2e-07
gi|111221314|ref|YP_712108.1|  hypothetical protein FRAAL1874 [Fr...  58.5    3e-07
gi|334112599|ref|ZP_08486858.1|  protein of unknown function DUF1...  58.2    4e-07
gi|320095182|ref|ZP_08026888.1|  hypothetical protein HMPREF9005_...  58.2    4e-07
gi|344337719|ref|ZP_08768653.1|  protein of unknown function DUF1...  57.4    6e-07
gi|316934787|ref|YP_004109769.1|  hypothetical protein Rpdx1_3466...  57.4    7e-07
gi|227113264|ref|ZP_03826920.1|  hypothetical protein PcarbP_0988...  57.0    1e-06
gi|237808068|ref|YP_002892508.1|  hypothetical protein Tola_1305 ...  56.2    2e-06
gi|344199686|ref|YP_004784012.1|  hypothetical protein Acife_1545...  55.8    2e-06
gi|82778765|ref|YP_405114.1|  hypothetical protein SDY_3657 [Shig...  54.7    5e-06
gi|15803925|ref|NP_289961.1|  hypothetical protein Z4776 [Escheri...  54.7    5e-06
gi|254498060|ref|ZP_05110820.1|  conserved hypothetical protein [...  53.9    7e-06


>gi|15840340|ref|NP_335377.1| hypothetical protein MT0944 [Mycobacterium tuberculosis CDC1551]
 gi|13880504|gb|AAK45191.1| hypothetical protein MT0944 [Mycobacterium tuberculosis CDC1551]
Length=178

 Score =  315 bits (808),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 158/158 (100%), Positives = 158/158 (100%), Gaps = 0/158 (0%)

Query  1    LHRAGAAVTANVWCRAGGIRMAPRPVIPVATQQRLRRQADRQSLGSSGLPALNCTPIRHT  60
            LHRAGAAVTANVWCRAGGIRMAPRPVIPVATQQRLRRQADRQSLGSSGLPALNCTPIRHT
Sbjct  21   LHRAGAAVTANVWCRAGGIRMAPRPVIPVATQQRLRRQADRQSLGSSGLPALNCTPIRHT  80

Query  61   IDVMATKPERKTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLF  120
            IDVMATKPERKTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLF
Sbjct  81   IDVMATKPERKTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLF  140

Query  121  VLTDAAWTEFLAALDRPVSHKPRLEKLFAARSIFDTEG  158
            VLTDAAWTEFLAALDRPVSHKPRLEKLFAARSIFDTEG
Sbjct  141  VLTDAAWTEFLAALDRPVSHKPRLEKLFAARSIFDTEG  178


>gi|15608058|ref|NP_215433.1| hypothetical protein Rv0918 [Mycobacterium tuberculosis H37Rv]
 gi|148660697|ref|YP_001282220.1| hypothetical protein MRA_0926 [Mycobacterium tuberculosis H37Ra]
 gi|148822127|ref|YP_001286881.1| hypothetical protein TBFG_10936 [Mycobacterium tuberculosis F11]
 18 more sequence titles
 Length=158

 Score =  315 bits (806),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 157/158 (99%), Positives = 158/158 (100%), Gaps = 0/158 (0%)

Query  1    LHRAGAAVTANVWCRAGGIRMAPRPVIPVATQQRLRRQADRQSLGSSGLPALNCTPIRHT  60
            +HRAGAAVTANVWCRAGGIRMAPRPVIPVATQQRLRRQADRQSLGSSGLPALNCTPIRHT
Sbjct  1    MHRAGAAVTANVWCRAGGIRMAPRPVIPVATQQRLRRQADRQSLGSSGLPALNCTPIRHT  60

Query  61   IDVMATKPERKTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLF  120
            IDVMATKPERKTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLF
Sbjct  61   IDVMATKPERKTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLF  120

Query  121  VLTDAAWTEFLAALDRPVSHKPRLEKLFAARSIFDTEG  158
            VLTDAAWTEFLAALDRPVSHKPRLEKLFAARSIFDTEG
Sbjct  121  VLTDAAWTEFLAALDRPVSHKPRLEKLFAARSIFDTEG  158


>gi|31792106|ref|NP_854599.1| hypothetical protein Mb0942 [Mycobacterium bovis AF2122/97]
 gi|121636841|ref|YP_977064.1| hypothetical protein BCG_0970 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|224989312|ref|YP_002643999.1| hypothetical protein JTY_0940 [Mycobacterium bovis BCG str. Tokyo 
172]
 26 more sequence titles
 Length=158

 Score =  313 bits (801),  Expect = 8e-84, Method: Compositional matrix adjust.
 Identities = 156/158 (99%), Positives = 157/158 (99%), Gaps = 0/158 (0%)

Query  1    LHRAGAAVTANVWCRAGGIRMAPRPVIPVATQQRLRRQADRQSLGSSGLPALNCTPIRHT  60
            +HRAGAAVTANVWCRAGGIRMAPRPVIPVATQQRLRRQADRQSLG SGLPALNCTPIRHT
Sbjct  1    MHRAGAAVTANVWCRAGGIRMAPRPVIPVATQQRLRRQADRQSLGGSGLPALNCTPIRHT  60

Query  61   IDVMATKPERKTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLF  120
            IDVMATKPERKTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLF
Sbjct  61   IDVMATKPERKTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLF  120

Query  121  VLTDAAWTEFLAALDRPVSHKPRLEKLFAARSIFDTEG  158
            VLTDAAWTEFLAALDRPVSHKPRLEKLFAARSIFDTEG
Sbjct  121  VLTDAAWTEFLAALDRPVSHKPRLEKLFAARSIFDTEG  158


>gi|339630981|ref|YP_004722623.1| hypothetical protein MAF_09270 [Mycobacterium africanum GM041182]
 gi|339330337|emb|CCC25999.1| conserved hypothetical protein [Mycobacterium africanum GM041182]
Length=151

 Score =  299 bits (766),  Expect = 9e-80, Method: Compositional matrix adjust.
 Identities = 149/151 (99%), Positives = 150/151 (99%), Gaps = 0/151 (0%)

Query  8    VTANVWCRAGGIRMAPRPVIPVATQQRLRRQADRQSLGSSGLPALNCTPIRHTIDVMATK  67
            +TANVWCRAGGIRMAPRPVIPVATQQRLRRQADRQSLG SGLPALNCTPIRHTIDVMATK
Sbjct  1    MTANVWCRAGGIRMAPRPVIPVATQQRLRRQADRQSLGGSGLPALNCTPIRHTIDVMATK  60

Query  68   PERKTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLFVLTDAAW  127
            PERKTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLFVLTDAAW
Sbjct  61   PERKTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLFVLTDAAW  120

Query  128  TEFLAALDRPVSHKPRLEKLFAARSIFDTEG  158
            TEFLAALDRPVSHKPRLEKLFAARSIFDTEG
Sbjct  121  TEFLAALDRPVSHKPRLEKLFAARSIFDTEG  151


>gi|308231671|ref|ZP_07413385.2| hypothetical protein TMAG_00854 [Mycobacterium tuberculosis SUMu001]
 gi|308370126|ref|ZP_07420376.2| hypothetical protein TMBG_01699 [Mycobacterium tuberculosis SUMu002]
 gi|308370536|ref|ZP_07421917.2| hypothetical protein TMCG_03176 [Mycobacterium tuberculosis SUMu003]
 22 more sequence titles
 Length=95

 Score =  186 bits (472),  Expect = 1e-45, Method: Compositional matrix adjust.
 Identities = 95/95 (100%), Positives = 95/95 (100%), Gaps = 0/95 (0%)

Query  64   MATKPERKTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLFVLT  123
            MATKPERKTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLFVLT
Sbjct  1    MATKPERKTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLFVLT  60

Query  124  DAAWTEFLAALDRPVSHKPRLEKLFAARSIFDTEG  158
            DAAWTEFLAALDRPVSHKPRLEKLFAARSIFDTEG
Sbjct  61   DAAWTEFLAALDRPVSHKPRLEKLFAARSIFDTEG  95


>gi|145221381|ref|YP_001132059.1| hypothetical protein Mflv_0786 [Mycobacterium gilvum PYR-GCK]
 gi|145213867|gb|ABP43271.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
Length=101

 Score =  137 bits (345),  Expect = 5e-31, Method: Compositional matrix adjust.
 Identities = 71/102 (70%), Positives = 81/102 (80%), Gaps = 4/102 (3%)

Query  54   CTPIRHTIDVMATKPERKTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDV  113
            C P  HT++ +A K    +ER A RLT EQDALIRRAAE EGTDLTNFT+TA LAHAR+V
Sbjct  3    CVPDGHTMEAVAAK----SERFAVRLTAEQDALIRRAAEVEGTDLTNFTLTATLAHAREV  58

Query  114  LADRRLFVLTDAAWTEFLAALDRPVSHKPRLEKLFAARSIFD  155
            LADRRLF+L + AW+EFL+ LDRPVS KPRL KLFA  SIFD
Sbjct  59   LADRRLFMLGEPAWSEFLSVLDRPVSPKPRLAKLFAEPSIFD  100


>gi|333988665|ref|YP_004521279.1| hypothetical protein JDM601_0025 [Mycobacterium sp. JDM601]
 gi|333484633|gb|AEF34025.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=87

 Score =  135 bits (339),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 67/85 (79%), Positives = 74/85 (88%), Gaps = 0/85 (0%)

Query  71   KTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLFVLTDAAWTEF  130
            KTER A RLT EQDALIRRAAE EGTDLTNFTVTA LAHAR+VLADRRLF+L  +AW+EF
Sbjct  2    KTERFAVRLTAEQDALIRRAAEVEGTDLTNFTVTATLAHAREVLADRRLFMLDASAWSEF  61

Query  131  LAALDRPVSHKPRLEKLFAARSIFD  155
            ++ LDRPVS +PRLEKLFA  SIFD
Sbjct  62   VSVLDRPVSQQPRLEKLFAEPSIFD  86


>gi|315441736|ref|YP_004074615.1| hypothetical protein Mspyr1_00440 [Mycobacterium sp. Spyr1]
 gi|315260039|gb|ADT96780.1| uncharacterized conserved protein [Mycobacterium sp. Spyr1]
Length=92

 Score =  131 bits (329),  Expect = 4e-29, Method: Compositional matrix adjust.
 Identities = 66/85 (78%), Positives = 73/85 (86%), Gaps = 0/85 (0%)

Query  71   KTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLFVLTDAAWTEF  130
            K+ER A RLT EQDALIRRAAE EGTDLTNFT+TA LAHAR+VLADRRLF+L + AW+EF
Sbjct  7    KSERFAVRLTAEQDALIRRAAEVEGTDLTNFTLTATLAHAREVLADRRLFMLGEPAWSEF  66

Query  131  LAALDRPVSHKPRLEKLFAARSIFD  155
            L+ LDRPVS KPRL KLFA  SIFD
Sbjct  67   LSVLDRPVSPKPRLAKLFAEPSIFD  91


>gi|336178777|ref|YP_004584152.1| hypothetical protein FsymDg_2905 [Frankia symbiont of Datisca 
glomerata]
 gi|334859757|gb|AEH10231.1| protein of unknown function DUF1778 [Frankia symbiont of Datisca 
glomerata]
Length=87

 Score =  112 bits (279),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 55/85 (65%), Positives = 66/85 (78%), Gaps = 0/85 (0%)

Query  71   KTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLFVLTDAAWTEF  130
            K+ R+A RL  EQDALIR AAE EG+ +T FTV AA+A A+DVLAD+RLF L   AWTEF
Sbjct  3    KSSRIAVRLPEEQDALIRAAAEVEGSTVTEFTVNAAVARAKDVLADQRLFTLGSEAWTEF  62

Query  131  LAALDRPVSHKPRLEKLFAARSIFD  155
            L  LDRPV+ KPRLE+LF  +SIF+
Sbjct  63   LTILDRPVTRKPRLERLFTEKSIFE  87


>gi|302343978|ref|YP_003808507.1| hypothetical protein Deba_2558 [Desulfarculus baarsii DSM 2075]
 gi|301640591|gb|ADK85913.1| Protein of unknown function DUF1778 [Desulfarculus baarsii DSM 
2075]
Length=92

 Score = 80.5 bits (197),  Expect = 7e-14, Method: Compositional matrix adjust.
 Identities = 40/92 (44%), Positives = 55/92 (60%), Gaps = 0/92 (0%)

Query  64   MATKPERKTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLFVLT  123
            M+   + KTER+  RL+P   AL++ AA+A   +++ F + A +  A   LADRRLF+L 
Sbjct  1    MSPTTQTKTERIDVRLSPSSKALLQEAAKASHKNVSEFILEAGIVAANQALADRRLFLLD  60

Query  124  DAAWTEFLAALDRPVSHKPRLEKLFAARSIFD  155
            +A W EF   LDRPV  KPRL KL     + D
Sbjct  61   EARWKEFQEVLDRPVQKKPRLSKLLNEPGVLD  92


>gi|302344014|ref|YP_003808543.1| hypothetical protein Deba_2595 [Desulfarculus baarsii DSM 2075]
 gi|301640627|gb|ADK85949.1| Protein of unknown function DUF1778 [Desulfarculus baarsii DSM 
2075]
Length=92

 Score = 76.3 bits (186),  Expect = 1e-12, Method: Compositional matrix adjust.
 Identities = 38/92 (42%), Positives = 55/92 (60%), Gaps = 0/92 (0%)

Query  64   MATKPERKTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLFVLT  123
            M+   + KTER+  RL+P   AL++ AA+A   +++ F + A +  A   LA+RR+F+L 
Sbjct  1    MSPTTQTKTERIDVRLSPSSKALLQEAAKATHKNVSEFILEAGIVAANQALAERRIFLLD  60

Query  124  DAAWTEFLAALDRPVSHKPRLEKLFAARSIFD  155
            +A W EF   LDRPV  KPRL KL     + D
Sbjct  61   EARWKEFQEVLDRPVQKKPRLGKLLNDPGVLD  92


>gi|240169137|ref|ZP_04747796.1| hypothetical protein MkanA1_07474 [Mycobacterium kansasii ATCC 
12478]
Length=129

 Score = 73.9 bits (180),  Expect = 7e-12, Method: Compositional matrix adjust.
 Identities = 42/97 (44%), Positives = 56/97 (58%), Gaps = 0/97 (0%)

Query  59   HTIDVMATKPERKTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRR  118
            +T     +  E K+ R   R+T  QDA++RR  +  G  L ++ V  A+  A   LADRR
Sbjct  32   YTNSAYTSGVETKSGRWHLRVTAAQDAVVRRVLDVTGESLNDYVVRHAVQAAEADLADRR  91

Query  119  LFVLTDAAWTEFLAALDRPVSHKPRLEKLFAARSIFD  155
            +FVL DAAWT+  A LDRP S KP L +L A  SI +
Sbjct  92   VFVLDDAAWTDLQALLDRPPSPKPELARLLANPSILE  128


>gi|154508312|ref|ZP_02043954.1| hypothetical protein ACTODO_00809 [Actinomyces odontolyticus 
ATCC 17982]
 gi|153797946|gb|EDN80366.1| hypothetical protein ACTODO_00809 [Actinomyces odontolyticus 
ATCC 17982]
Length=102

 Score = 71.6 bits (174),  Expect = 4e-11, Method: Compositional matrix adjust.
 Identities = 39/86 (46%), Positives = 52/86 (61%), Gaps = 0/86 (0%)

Query  71   KTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLFVLTDAAWTEF  130
            KTERL  RLT EQDALIRRAAE +   +++F ++ A   A+  LAD+R+F + D  +  F
Sbjct  5    KTERLDLRLTKEQDALIRRAAEQDARSISDFVLSTATLEAQRRLADQRIFFMNDEQYARF  64

Query  131  LAALDRPVSHKPRLEKLFAARSIFDT  156
               L  P +  P+L KLF   S F T
Sbjct  65   EEILQTPPTDDPKLRKLFERPSPFGT  90


>gi|116620423|ref|YP_822579.1| hypothetical protein Acid_1300 [Candidatus Solibacter usitatus 
Ellin6076]
 gi|116223585|gb|ABJ82294.1| conserved hypothetical protein [Candidatus Solibacter usitatus 
Ellin6076]
Length=97

 Score = 69.7 bits (169),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 41/88 (47%), Positives = 53/88 (61%), Gaps = 2/88 (2%)

Query  64   MATK-PER-KTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLFV  121
            MAT  PE+ K  R   R T  ++ LIR AAE  G ++T F + AA   A + L D+  FV
Sbjct  1    MATSLPEQPKDRRFQLRATAREETLIRVAAERRGINVTEFILGAAREKAEESLTDQTKFV  60

Query  122  LTDAAWTEFLAALDRPVSHKPRLEKLFA  149
            L +  W +F+ ALDRP   KPRL+KLFA
Sbjct  61   LDEKQWKQFMEALDRPAREKPRLKKLFA  88


>gi|194336777|ref|YP_002018571.1| hypothetical protein Ppha_1718 [Pelodictyon phaeoclathratiforme 
BU-1]
 gi|194309254|gb|ACF43954.1| Protein of unknown function DUF1778 [Pelodictyon phaeoclathratiforme 
BU-1]
Length=92

 Score = 68.6 bits (166),  Expect = 3e-10, Method: Compositional matrix adjust.
 Identities = 38/85 (45%), Positives = 52/85 (62%), Gaps = 0/85 (0%)

Query  71   KTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLFVLTDAAWTEF  130
            KTE+L  RL+ +   ++R AA A    L+ F + +AL+ A + LADRR F L    WT F
Sbjct  7    KTEKLDLRLSQQAKQVLRSAAIASNRTLSEFVLESALSRAEETLADRRSFSLDVTQWTAF  66

Query  131  LAALDRPVSHKPRLEKLFAARSIFD  155
            +AALD      PRL+KLF  +SIF+
Sbjct  67   IAALDASPRELPRLKKLFQEQSIFE  91


>gi|258404534|ref|YP_003197276.1| hypothetical protein Dret_0400 [Desulfohalobium retbaense DSM 
5692]
 gi|257796761|gb|ACV67698.1| Protein of unknown function DUF1778 [Desulfohalobium retbaense 
DSM 5692]
Length=98

 Score = 68.2 bits (165),  Expect = 4e-10, Method: Compositional matrix adjust.
 Identities = 35/90 (39%), Positives = 52/90 (58%), Gaps = 0/90 (0%)

Query  66   TKPERKTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLFVLTDA  125
            TK E+ +ER + R++   + LIR AA+ +    + +   +A   A   LADRR F L++ 
Sbjct  5    TKREKCSERFSFRISARNNELIRSAAQLKNMSASQYAAESAANQAEMDLADRRSFSLSEG  64

Query  126  AWTEFLAALDRPVSHKPRLEKLFAARSIFD  155
               EFL ALDRP+  K RL +LF  ++I D
Sbjct  65   QMQEFLNALDRPIQEKTRLRQLFREKTILD  94


>gi|333990697|ref|YP_004523311.1| hypothetical protein JDM601_2057 [Mycobacterium sp. JDM601]
 gi|333486665|gb|AEF36057.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=56

 Score = 68.2 bits (165),  Expect = 4e-10, Method: Compositional matrix adjust.
 Identities = 33/56 (59%), Positives = 40/56 (72%), Gaps = 0/56 (0%)

Query  103  VTAALAHARDVLADRRLFVLTDAAWTEFLAALDRPVSHKPRLEKLFAARSIFDTEG  158
            + A +AHARDVLADRR F+L DA W EF A LDRPV ++P L K+F   S+FD E 
Sbjct  1    MCATVAHARDVLADRRHFLLDDANWAEFSALLDRPVQYRPALAKMFDKPSLFDPEA  56


>gi|86739879|ref|YP_480279.1| CopG-like DNA-binding [Frankia sp. CcI3]
 gi|86566741|gb|ABD10550.1| CopG-like DNA-binding [Frankia sp. CcI3]
Length=92

 Score = 67.4 bits (163),  Expect = 7e-10, Method: Compositional matrix adjust.
 Identities = 36/78 (47%), Positives = 48/78 (62%), Gaps = 0/78 (0%)

Query  71   KTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLFVLTDAAWTEF  130
            + +RLA RL  ++  +IR AAE EG  L +F   A   +AR+VLADRRLF + DA W++ 
Sbjct  5    RDDRLAVRLPEDEAEIIRSAAEGEGLSLEDFAAEAMKRYAREVLADRRLFRVPDADWSKL  64

Query  131  LAALDRPVSHKPRLEKLF  148
             A LD P    PRL +L 
Sbjct  65   EALLDAPPPDSPRLRRLL  82


>gi|296134812|ref|YP_003642054.1| Protein of unknown function DUF1778 [Thiomonas intermedia K12]
 gi|295794934|gb|ADG29724.1| Protein of unknown function DUF1778 [Thiomonas intermedia K12]
Length=92

 Score = 65.9 bits (159),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 38/85 (45%), Positives = 49/85 (58%), Gaps = 0/85 (0%)

Query  64   MATKPERKTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLFVLT  123
            M+T    KTER+  R +     L++ AA A   +++ F + A +  A   LADRR FVL 
Sbjct  1    MSTLNLSKTERIDVRASAPVKKLLQEAARACHKNVSEFLLDAGVTAAAQTLADRRQFVLG  60

Query  124  DAAWTEFLAALDRPVSHKPRLEKLF  148
            DA W  F  ALDRPV  KPRL+KL 
Sbjct  61   DAQWQAFQDALDRPVQSKPRLKKLL  85


>gi|315605436|ref|ZP_07880476.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 
str. F0310]
 gi|315312843|gb|EFU60920.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 
str. F0310]
Length=102

 Score = 65.5 bits (158),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 37/86 (44%), Positives = 50/86 (59%), Gaps = 0/86 (0%)

Query  71   KTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLFVLTDAAWTEF  130
            KT RL  RLT +QD LIRRAAE EG  ++ FT++     A+  LAD+R+F+L++     F
Sbjct  5    KTRRLDLRLTDKQDTLIRRAAEQEGRSVSEFTLSTVTMEAQRRLADQRVFILSEEDHARF  64

Query  131  LAALDRPVSHKPRLEKLFAARSIFDT  156
               L  P+   P+L KL    S F T
Sbjct  65   EEILQTPLKDDPKLRKLLNRPSPFGT  90


>gi|288916910|ref|ZP_06411282.1| Protein of unknown function DUF1778 [Frankia sp. EUN1f]
 gi|288351619|gb|EFC85824.1| Protein of unknown function DUF1778 [Frankia sp. EUN1f]
Length=100

 Score = 65.1 bits (157),  Expect = 3e-09, Method: Compositional matrix adjust.
 Identities = 36/69 (53%), Positives = 44/69 (64%), Gaps = 1/69 (1%)

Query  81   PEQDA-LIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLFVLTDAAWTEFLAALDRPVS  139
            PE DA +IR AAEAEG  L  F V +   HARDVLADRRLF + ++AW E  A L  P +
Sbjct  14   PEDDAEIIRSAAEAEGLSLAMFAVESMRRHARDVLADRRLFRVAESAWAELEAMLQAPPA  73

Query  140  HKPRLEKLF  148
              PR+ +L 
Sbjct  74   DNPRMRRLL  82


>gi|94265184|ref|ZP_01288946.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
 gi|94267974|ref|ZP_01291049.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
 gi|93451779|gb|EAT02537.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
 gi|93454325|gb|EAT04632.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
Length=92

 Score = 64.7 bits (156),  Expect = 4e-09, Method: Compositional matrix adjust.
 Identities = 37/92 (41%), Positives = 50/92 (55%), Gaps = 0/92 (0%)

Query  64   MATKPERKTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLFVLT  123
            M T    KTER+  R       L++ AA A   +++ F + A +  A   LA+RR FVL 
Sbjct  1    MKTLNISKTERIDVRANRSVKLLLQEAARACHKNVSEFLLDAGVTAANQALAERRHFVLN  60

Query  124  DAAWTEFLAALDRPVSHKPRLEKLFAARSIFD  155
            +  W EF  ALDRPV  KPRL+KL +   + D
Sbjct  61   EDQWREFQQALDRPVQAKPRLKKLLSEPGVLD  92


>gi|83648276|ref|YP_436711.1| hypothetical protein HCH_05628 [Hahella chejuensis KCTC 2396]
 gi|83636319|gb|ABC32286.1| uncharacterized protein conserved in bacteria [Hahella chejuensis 
KCTC 2396]
Length=92

 Score = 64.3 bits (155),  Expect = 5e-09, Method: Compositional matrix adjust.
 Identities = 36/85 (43%), Positives = 48/85 (57%), Gaps = 0/85 (0%)

Query  64   MATKPERKTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLFVLT  123
            M+T    KTER+  R +     L++ AA     +++ F + A +  A   LADRR FVL 
Sbjct  1    MSTPNVSKTERIDVRASTPVKQLLQEAARVCHKNVSEFLLDAGVTAATQTLADRRQFVLG  60

Query  124  DAAWTEFLAALDRPVSHKPRLEKLF  148
            +A W  F  ALDRPV  KPRL+KL 
Sbjct  61   EAQWQAFQEALDRPVQSKPRLKKLL  85


>gi|304311929|ref|YP_003811527.1| hypothetical protein HDN1F_23000 [gamma proteobacterium HdN1]
 gi|301797662|emb|CBL45883.1| Conserved hypothetical protein [gamma proteobacterium HdN1]
Length=92

 Score = 64.3 bits (155),  Expect = 6e-09, Method: Compositional matrix adjust.
 Identities = 37/85 (44%), Positives = 48/85 (57%), Gaps = 0/85 (0%)

Query  64   MATKPERKTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLFVLT  123
            M+T    KTER+  R +     L++ AA A   +++ F + A +  A   LADRR FVL 
Sbjct  1    MSTLNLSKTERIDVRASTPVKQLLQDAARACHKNVSEFLLDAGVTAAAQTLADRRQFVLD  60

Query  124  DAAWTEFLAALDRPVSHKPRLEKLF  148
            D  W  F  ALDRPV  KPRL+KL 
Sbjct  61   DTQWQAFQEALDRPVQSKPRLKKLL  85


>gi|220935245|ref|YP_002514144.1| hypothetical protein Tgr7_2077 [Thioalkalivibrio sulfidophilus 
HL-EbGr7]
 gi|219996555|gb|ACL73157.1| Protein of unknown function DUF1778 [Thioalkalivibrio sulfidophilus 
HL-EbGr7]
Length=92

 Score = 63.9 bits (154),  Expect = 8e-09, Method: Compositional matrix adjust.
 Identities = 37/85 (44%), Positives = 49/85 (58%), Gaps = 0/85 (0%)

Query  64   MATKPERKTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLFVLT  123
            M+T    KTER+  R +     L++ AA A   +++ F + A +  A   LADRR FVL 
Sbjct  1    MSTLNLPKTERIDVRASTPVKQLLQEAARACHKNVSEFLLDAGVTAAAQTLADRRQFVLD  60

Query  124  DAAWTEFLAALDRPVSHKPRLEKLF  148
            +A W  F  ALDRPV  KPRL+KL 
Sbjct  61   EAQWQAFQEALDRPVQSKPRLKKLL  85


>gi|158314003|ref|YP_001506511.1| hypothetical protein Franean1_2169 [Frankia sp. EAN1pec]
 gi|158109408|gb|ABW11605.1| Protein of unknown function DUF1778 [Frankia sp. EAN1pec]
Length=135

 Score = 63.5 bits (153),  Expect = 8e-09, Method: Compositional matrix adjust.
 Identities = 43/101 (43%), Positives = 56/101 (56%), Gaps = 7/101 (6%)

Query  50   PALNC-TPIRHTIDVMATKPERKTERLAARLTPEQDA-LIRRAAEAEGTDLTNFTVTAAL  107
            P + C  P R T  + + + ER T  L     P  DA +IR AA+AEG  L  F V +  
Sbjct  33   PGVACRGPGRQTASMTSAEDERITFGL-----PADDAEIIRSAADAEGLSLELFAVESMR  87

Query  108  AHARDVLADRRLFVLTDAAWTEFLAALDRPVSHKPRLEKLF  148
             +AR+VLADRRLF +++ AW E  A L  P +  PRL KL 
Sbjct  88   RYAREVLADRRLFRVSETAWAELDAMLQAPPTDNPRLRKLL  128


>gi|90425040|ref|YP_533410.1| hypothetical protein RPC_3552 [Rhodopseudomonas palustris BisB18]
 gi|90107054|gb|ABD89091.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
Length=95

 Score = 62.8 bits (151),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 35/85 (42%), Positives = 51/85 (60%), Gaps = 0/85 (0%)

Query  71   KTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLFVLTDAAWTEF  130
            ++E+L  RLTPE   L+  AA+A    ++ F + +AL  A++ L DR+ F L  A W  F
Sbjct  6    RSEKLDLRLTPEAKRLLNAAAQASRRSVSEFVLESALDRAQEALPDRQHFGLDAAGWEAF  65

Query  131  LAALDRPVSHKPRLEKLFAARSIFD  155
            LAALD P    PRL++L    S+F+
Sbjct  66   LAALDAPPRPLPRLQRLLTEPSVFE  90


>gi|294338764|emb|CAZ87098.1| conserved hypothetical protein; putative Methionine repressor-like 
[Thiomonas sp. 3As]
Length=92

 Score = 62.8 bits (151),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 37/85 (44%), Positives = 48/85 (57%), Gaps = 0/85 (0%)

Query  64   MATKPERKTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLFVLT  123
            M+T    KTER+  R +     L++ AA A   +++ F + A +  A   LADRR FVL 
Sbjct  1    MSTLNLSKTERIDVRASAPVKKLLQEAARACHKNVSEFLLDAGVTAAAQTLADRRQFVLD  60

Query  124  DAAWTEFLAALDRPVSHKPRLEKLF  148
            DA W  F  ALDRPV  K RL+KL 
Sbjct  61   DAQWQAFQDALDRPVQSKSRLKKLL  85


>gi|340627803|ref|YP_004746255.1| hypothetical protein MCAN_28301 [Mycobacterium canettii CIPT 
140010059]
 gi|340005993|emb|CCC45161.1| putative uncharacterized protein [Mycobacterium canettii CIPT 
140010059]
Length=91

 Score = 62.8 bits (151),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 49/80 (62%), Gaps = 0/80 (0%)

Query  68   PERKTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLFVLTDAAW  127
            PE  T RL  RL+PEQ+  +RRAA   G  L+ F ++AA+ HA D+LA      L++AA+
Sbjct  2    PETLTGRLNFRLSPEQEQALRRAAALTGQSLSGFVLSAAVDHAHDLLARANRIELSEAAF  61

Query  128  TEFLAALDRPVSHKPRLEKL  147
              F+AALD P    P L +L
Sbjct  62   RRFVAALDEPDEAAPELVRL  81


>gi|306807392|ref|ZP_07444060.1| hypothetical protein TMGG_02066 [Mycobacterium tuberculosis SUMu007]
 gi|308346195|gb|EFP35046.1| hypothetical protein TMGG_02066 [Mycobacterium tuberculosis SUMu007]
Length=274

 Score = 61.2 bits (147),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 35/80 (44%), Positives = 48/80 (60%), Gaps = 0/80 (0%)

Query  68   PERKTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLFVLTDAAW  127
            PE  T RL  RL+PEQ+  +R AA   G  L+ F ++AA+ HA D+LA      L++AA+
Sbjct  66   PETLTGRLNFRLSPEQEQALRHAAALTGQSLSGFVLSAAVDHAHDLLARANRIELSEAAF  125

Query  128  TEFLAALDRPVSHKPRLEKL  147
              F+AALD P    P L +L
Sbjct  126  RRFVAALDEPDEAAPELVRL  145


>gi|307085503|ref|ZP_07494616.1| hypothetical protein TMLG_02519 [Mycobacterium tuberculosis SUMu012]
 gi|308364960|gb|EFP53811.1| hypothetical protein TMLG_02519 [Mycobacterium tuberculosis SUMu012]
Length=180

 Score = 61.2 bits (147),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 35/80 (44%), Positives = 48/80 (60%), Gaps = 0/80 (0%)

Query  68   PERKTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLFVLTDAAW  127
            PE  T RL  RL+PEQ+  +R AA   G  L+ F ++AA+ HA D+LA      L++AA+
Sbjct  66   PETLTGRLNFRLSPEQEQALRHAAALTGQSLSGFVLSAAVDHAHDLLARANRIELSEAAF  125

Query  128  TEFLAALDRPVSHKPRLEKL  147
              F+AALD P    P L +L
Sbjct  126  RRFVAALDEPDEAAPELVRL  145


>gi|119898317|ref|YP_933530.1| hypothetical protein azo2026 [Azoarcus sp. BH72]
 gi|119670730|emb|CAL94643.1| conserved hypothetical protein [Azoarcus sp. BH72]
Length=97

 Score = 61.2 bits (147),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 32/92 (35%), Positives = 55/92 (60%), Gaps = 0/92 (0%)

Query  64   MATKPERKTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLFVLT  123
            + + P  ++ RL  R TPEQ+A++RRAAEA    LT+F + +A   A   L D+RLF+++
Sbjct  4    ITSSPAVRSARLGLRATPEQEAVLRRAAEAAHKSLTDFILDSACLAAEQTLLDQRLFMVS  63

Query  124  DAAWTEFLAALDRPVSHKPRLEKLFAARSIFD  155
             + +   +  L+RP      L +LF+ ++ +D
Sbjct  64   GSQYQALMDLLERPEQSNEGLRELFSRKAPWD  95


>gi|15842341|ref|NP_337378.1| hypothetical protein MT2871 [Mycobacterium tuberculosis CDC1551]
 gi|31793979|ref|NP_856472.1| hypothetical protein Mb2826 [Mycobacterium bovis AF2122/97]
 gi|57117026|ref|YP_177678.1| hypothetical protein Rv2803 [Mycobacterium tuberculosis H37Rv]
 58 more sequence titles
 Length=155

 Score = 61.2 bits (147),  Expect = 5e-08, Method: Compositional matrix adjust.
 Identities = 35/80 (44%), Positives = 48/80 (60%), Gaps = 0/80 (0%)

Query  68   PERKTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLFVLTDAAW  127
            PE  T RL  RL+PEQ+  +R AA   G  L+ F ++AA+ HA D+LA      L++AA+
Sbjct  66   PETLTGRLNFRLSPEQEQALRHAAALTGQSLSGFVLSAAVDHAHDLLARANRIELSEAAF  125

Query  128  TEFLAALDRPVSHKPRLEKL  147
              F+AALD P    P L +L
Sbjct  126  RRFVAALDEPDEAAPELVRL  145


>gi|110597351|ref|ZP_01385639.1| conserved hypothetical protein [Chlorobium ferrooxidans DSM 13031]
 gi|110341187|gb|EAT59655.1| conserved hypothetical protein [Chlorobium ferrooxidans DSM 13031]
Length=115

 Score = 60.8 bits (146),  Expect = 6e-08, Method: Compositional matrix adjust.
 Identities = 38/98 (39%), Positives = 54/98 (56%), Gaps = 1/98 (1%)

Query  60   TIDVMATKPERKTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRL  119
            T   MAT+   KT +L  RL+      + RAA A  + L+ F + +AL+ A ++L DRR 
Sbjct  19   TTFFMATQT-TKTAKLDIRLSMATKDTLSRAATAAHSSLSQFVLESALSRAEEMLVDRRS  77

Query  120  FVLTDAAWTEFLAALDRPVSHKPRLEKLFAARSIFDTE  157
            F L    W  F+ ALD P    PR+ KLF  +S+F+ E
Sbjct  78   FNLDAEQWALFMEALDAPDRTLPRVNKLFKQQSVFENE  115


>gi|308232248|ref|ZP_07664041.1| hypothetical protein TMAG_03186 [Mycobacterium tuberculosis SUMu001]
 gi|308369864|ref|ZP_07419323.2| hypothetical protein TMBG_02938 [Mycobacterium tuberculosis SUMu002]
 gi|308371134|ref|ZP_07667098.1| hypothetical protein TMCG_02049 [Mycobacterium tuberculosis SUMu003]
 11 more sequence titles
 Length=91

 Score = 60.8 bits (146),  Expect = 6e-08, Method: Compositional matrix adjust.
 Identities = 35/80 (44%), Positives = 48/80 (60%), Gaps = 0/80 (0%)

Query  68   PERKTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLFVLTDAAW  127
            PE  T RL  RL+PEQ+  +R AA   G  L+ F ++AA+ HA D+LA      L++AA+
Sbjct  2    PETLTGRLNFRLSPEQEQALRHAAALTGQSLSGFVLSAAVDHAHDLLARANRIELSEAAF  61

Query  128  TEFLAALDRPVSHKPRLEKL  147
              F+AALD P    P L +L
Sbjct  62   RRFVAALDEPDEAAPELVRL  81


>gi|289444352|ref|ZP_06434096.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289417271|gb|EFD14511.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
Length=157

 Score = 60.8 bits (146),  Expect = 7e-08, Method: Compositional matrix adjust.
 Identities = 35/80 (44%), Positives = 48/80 (60%), Gaps = 0/80 (0%)

Query  68   PERKTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLFVLTDAAW  127
            PE  T RL  RL+PEQ+  +R AA   G  L+ F ++AA+ HA D+LA      L++AA+
Sbjct  68   PETLTGRLNFRLSPEQEQALRHAAALTGQSLSGFVLSAAVDHAHDLLARANRIELSEAAF  127

Query  128  TEFLAALDRPVSHKPRLEKL  147
              F+AALD P    P L +L
Sbjct  128  RRFVAALDEPDEAAPELVRL  147


>gi|344201044|ref|YP_004785370.1| hypothetical protein Acife_2970 [Acidithiobacillus ferrivorans 
SS3]
 gi|343776488|gb|AEM49044.1| protein of unknown function DUF1778 [Acidithiobacillus ferrivorans 
SS3]
Length=92

 Score = 59.7 bits (143),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 33/78 (43%), Positives = 43/78 (56%), Gaps = 0/78 (0%)

Query  71   KTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLFVLTDAAWTEF  130
            KTER+  R +     L++ AA A   +++ F + A +  A   LADRR FVL    W  F
Sbjct  8    KTERIDVRASSSVKQLLQDAAHACHKNVSEFLLDAGVTAANQALADRRHFVLNKEQWQAF  67

Query  131  LAALDRPVSHKPRLEKLF  148
              ALDRPV  KP L+KL 
Sbjct  68   QDALDRPVQAKPHLKKLL  85


>gi|87300639|ref|ZP_01083481.1| putative cytoplasmic protein [Synechococcus sp. WH 5701]
 gi|87284510|gb|EAQ76462.1| putative cytoplasmic protein [Synechococcus sp. WH 5701]
Length=97

 Score = 59.7 bits (143),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 34/94 (37%), Positives = 53/94 (57%), Gaps = 0/94 (0%)

Query  64   MATKPERKTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLFVLT  123
            +   P  ++ RL  R TPEQ+A++RRAAEA    LT+F + +A   A   L D+RLF+++
Sbjct  4    IGASPPARSARLGLRATPEQEAVLRRAAEATHKSLTDFILDSACLAAEQTLLDQRLFMVS  63

Query  124  DAAWTEFLAALDRPVSHKPRLEKLFAARSIFDTE  157
             +     +  LDRP      L  LFA ++ +D +
Sbjct  64   ASQAQALMDLLDRPEQANEGLRDLFARQAPWDAQ  97


>gi|333989585|ref|YP_004522199.1| hypothetical protein JDM601_0945 [Mycobacterium sp. JDM601]
 gi|333485553|gb|AEF34945.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=100

 Score = 59.3 bits (142),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 33/87 (38%), Positives = 47/87 (55%), Gaps = 0/87 (0%)

Query  71   KTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLFVLTDAAWTEF  130
            + +RL  R + +Q  LIR+AAEA    +T+F + + L  A  +LADR+ FV  D  W  F
Sbjct  13   RDQRLNFRASAQQQLLIRQAAEAADRTVTDFILGSVLESAERILADRKWFVANDEQWERF  72

Query  131  LAALDRPVSHKPRLEKLFAARSIFDTE  157
               LD P+   P+L +L    S F  E
Sbjct  73   QELLDAPLQPMPKLRQLLQRESPFAEE  99


>gi|111221314|ref|YP_712108.1| hypothetical protein FRAAL1874 [Frankia alni ACN14a]
 gi|111148846|emb|CAJ60524.1| hypothetical protein FRAAL1874 [Frankia alni ACN14a]
Length=79

 Score = 58.5 bits (140),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 31/63 (50%), Positives = 39/63 (62%), Gaps = 0/63 (0%)

Query  86   LIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLFVLTDAAWTEFLAALDRPVSHKPRLE  145
            +IR AAE EG  L +F V A   +A++VLADRRLF + D  W  F A LD P +  PRL 
Sbjct  10   VIRSAAEGEGLSLEDFAVEAMKRYAQEVLADRRLFRVADTDWGAFEALLDGPPADTPRLR  69

Query  146  KLF  148
            +L 
Sbjct  70   RLL  72


>gi|334112599|ref|ZP_08486858.1| protein of unknown function DUF1778 [Methylomicrobium album BG8]
 gi|333597353|gb|EGL02190.1| protein of unknown function DUF1778 [Methylomicrobium album BG8]
Length=96

 Score = 58.2 bits (139),  Expect = 4e-07, Method: Compositional matrix adjust.
 Identities = 33/92 (36%), Positives = 49/92 (54%), Gaps = 0/92 (0%)

Query  67   KPERKTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLFVLTDAA  126
            K  ++++R+  R+ P+    ++ AA  +   ++ F +  AL+ A +VLADRR FVL    
Sbjct  2    KTNKRSDRIDLRIDPKAKEALQAAALLKHKTVSEFILENALSAANEVLADRRYFVLNAEQ  61

Query  127  WTEFLAALDRPVSHKPRLEKLFAARSIFDTEG  158
            W  F AALD P    PRLE+L      FD   
Sbjct  62   WEAFQAALDAPPRALPRLERLMKEPGFFDVHA  93


>gi|320095182|ref|ZP_08026888.1| hypothetical protein HMPREF9005_1500 [Actinomyces sp. oral taxon 
178 str. F0338]
 gi|319977887|gb|EFW09524.1| hypothetical protein HMPREF9005_1500 [Actinomyces sp. oral taxon 
178 str. F0338]
Length=97

 Score = 58.2 bits (139),  Expect = 4e-07, Method: Compositional matrix adjust.
 Identities = 32/87 (37%), Positives = 51/87 (59%), Gaps = 0/87 (0%)

Query  68   PERKTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLFVLTDAAW  127
            P  KT R+  R+T  Q+ LIR+AA      +++F +T+A   A+  LAD+R+F +++  +
Sbjct  2    PPAKTHRMDLRVTERQNLLIRQAAALTDRSVSDFVLTSATLEAQRALADQRVFPVSEDQF  61

Query  128  TEFLAALDRPVSHKPRLEKLFAARSIF  154
              F   +DRPV+  P+L KL    S F
Sbjct  62   AHFQEIVDRPVTDMPKLRKLLNRPSPF  88


>gi|344337719|ref|ZP_08768653.1| protein of unknown function DUF1778 [Thiocapsa marina 5811]
 gi|343802672|gb|EGV20612.1| protein of unknown function DUF1778 [Thiocapsa marina 5811]
Length=96

 Score = 57.4 bits (137),  Expect = 6e-07, Method: Compositional matrix adjust.
 Identities = 34/89 (39%), Positives = 49/89 (56%), Gaps = 0/89 (0%)

Query  67   KPERKTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLFVLTDAA  126
             P+ ++ +L  RLTPE  A +  AA      +  F +++AL  A + LADRR F L    
Sbjct  3    NPQARSTKLDLRLTPEAKARLSAAAWERHQSVGQFVLSSALERADETLADRRHFGLNAER  62

Query  127  WTEFLAALDRPVSHKPRLEKLFAARSIFD  155
            W+ F+AAL+ P    PRLE+L    + FD
Sbjct  63   WSAFMAALEMPPRALPRLERLLREPTPFD  91


>gi|316934787|ref|YP_004109769.1| hypothetical protein Rpdx1_3466 [Rhodopseudomonas palustris DX-1]
 gi|315602501|gb|ADU45036.1| Protein of unknown function DUF1778 [Rhodopseudomonas palustris 
DX-1]
Length=96

 Score = 57.4 bits (137),  Expect = 7e-07, Method: Compositional matrix adjust.
 Identities = 34/84 (41%), Positives = 46/84 (55%), Gaps = 0/84 (0%)

Query  71   KTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLFVLTDAAWTEF  130
            +TE+L  RLT E    +  AA+A+   L+ F + +AL  A + LADRR+F L    W  F
Sbjct  7    RTEKLDLRLTAEAKHTLTAAAQAQRRSLSEFVLESALRRAEETLADRRVFQLPPEQWEAF  66

Query  131  LAALDRPVSHKPRLEKLFAARSIF  154
            +AALD P    PRL  L     +F
Sbjct  67   VAALDAPPRDLPRLRTLLEEPGVF  90


>gi|227113264|ref|ZP_03826920.1| hypothetical protein PcarbP_09885 [Pectobacterium carotovorum 
subsp. brasiliensis PBR1692]
Length=119

 Score = 57.0 bits (136),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 36/102 (36%), Positives = 53/102 (52%), Gaps = 4/102 (3%)

Query  53   NCTPIRHTIDVMATKPERKTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARD  112
            +C  I +T   M  KPE K   +  R    Q  LI  AA       T+F + AA   A+D
Sbjct  17   SCIAIHYT--GMMMKPETKEAPINIRAKASQRDLIDMAANLVSKSRTDFMLEAACREAQD  74

Query  113  VLADRRLFVLTDAAWTEFLAALDRPVSH--KPRLEKLFAARS  152
            +L D+RLF+L +  + EFLA LD P++   + R+  L + +S
Sbjct  75   ILLDQRLFILDNEQFDEFLAELDAPITEERQARINDLMSRKS  116


>gi|237808068|ref|YP_002892508.1| hypothetical protein Tola_1305 [Tolumonas auensis DSM 9187]
 gi|237500329|gb|ACQ92922.1| Protein of unknown function DUF1778 [Tolumonas auensis DSM 9187]
Length=98

 Score = 56.2 bits (134),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 29/75 (39%), Positives = 43/75 (58%), Gaps = 0/75 (0%)

Query  75   LAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLFVLTDAAWTEFLAAL  134
            L  R TPEQ+A++RRAA+     LT+F + +A   A   L D+RLFV++   +   L  L
Sbjct  17   LGLRATPEQEAVLRRAADISHKSLTDFILDSACHAAEQTLLDQRLFVVSGEQYQTLLDML  76

Query  135  DRPVSHKPRLEKLFA  149
            D+P      L+ LF+
Sbjct  77   DQPAQENQGLQDLFS  91


>gi|344199686|ref|YP_004784012.1| hypothetical protein Acife_1545 [Acidithiobacillus ferrivorans 
SS3]
 gi|343775130|gb|AEM47686.1| protein of unknown function DUF1778 [Acidithiobacillus ferrivorans 
SS3]
Length=96

 Score = 55.8 bits (133),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 29/85 (35%), Positives = 50/85 (59%), Gaps = 0/85 (0%)

Query  71   KTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLFVLTDAAWTEF  130
            ++ RL    TPEQ+ ++RRAA+     LT+F + +A   A   L D+RLF++T   + +F
Sbjct  11   RSTRLGLCATPEQEVILRRAADVAHKSLTDFVLDSACLSAEQTLLDQRLFMVTGRQYQDF  70

Query  131  LAALDRPVSHKPRLEKLFAARSIFD  155
            L  L++P      L+ LF+ ++ +D
Sbjct  71   LDLLEQPEQVNEGLQDLFSRKAPWD  95


>gi|82778765|ref|YP_405114.1| hypothetical protein SDY_3657 [Shigella dysenteriae Sd197]
 gi|81242913|gb|ABB63623.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
Length=94

 Score = 54.7 bits (130),  Expect = 5e-06, Method: Compositional matrix adjust.
 Identities = 31/76 (41%), Positives = 41/76 (54%), Gaps = 0/76 (0%)

Query  64   MATKPERKTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLFVLT  123
            M  KPE K   +  R    Q  LI  AA       T+F + AA   A+D+L D+RLF+L 
Sbjct  1    MNMKPESKEAPINIRAKASQRDLIDMAANLVAKSRTDFMLDAACREAQDILLDQRLFILD  60

Query  124  DAAWTEFLAALDRPVS  139
            D  +  FLAALD P++
Sbjct  61   DEQYDAFLAALDAPIT  76


>gi|15803925|ref|NP_289961.1| hypothetical protein Z4776 [Escherichia coli O157:H7 EDL933]
 gi|15833515|ref|NP_312288.1| hypothetical protein ECs4261 [Escherichia coli O157:H7 str. Sakai]
 gi|188024510|ref|ZP_02997135.1| conserved hypothetical protein [Escherichia coli O157:H7 str. 
EC4113]
 12 more sequence titles
 Length=94

 Score = 54.7 bits (130),  Expect = 5e-06, Method: Compositional matrix adjust.
 Identities = 31/76 (41%), Positives = 41/76 (54%), Gaps = 0/76 (0%)

Query  64   MATKPERKTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLFVLT  123
            M  KPE K   +  R    Q  LI  AA       T+F + AA   A+D+L D+RLF+L 
Sbjct  1    MNMKPESKEAPINIRAKASQRDLIDMAANLVAKSRTDFMLDAACREAQDILLDQRLFILD  60

Query  124  DAAWTEFLAALDRPVS  139
            D  +  FLAALD P++
Sbjct  61   DEQYDAFLAALDAPIT  76


>gi|254498060|ref|ZP_05110820.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
 gi|254352725|gb|EET11500.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
Length=123

 Score = 53.9 bits (128),  Expect = 7e-06, Method: Compositional matrix adjust.
 Identities = 29/85 (35%), Positives = 46/85 (55%), Gaps = 0/85 (0%)

Query  71   KTERLAARLTPEQDALIRRAAEAEGTDLTNFTVTAALAHARDVLADRRLFVLTDAAWTEF  130
            KT RL  R +  Q  +IR A++     LT F   +A   A  V+ D+R+F+++D  + +F
Sbjct  32   KTSRLGFRASESQAKIIRMASDISHKSLTEFITDSAYQAAEKVILDQRIFMVSDDIFNKF  91

Query  131  LAALDRPVSHKPRLEKLFAARSIFD  155
               LDRP      L+ LF++ S +D
Sbjct  92   SEILDRPEQDNEGLKDLFSSSSPWD  116



Lambda     K      H
   0.322    0.132    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128907826664




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40