BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0937c Length=273 Score E Sequences producing significant alignments: (Bits) Value gi|15608077|ref|NP_215452.1| hypothetical protein Rv0937c [Mycob... 561 3e-158 gi|254363865|ref|ZP_04979911.1| conserved hypothetical protein [... 561 4e-158 gi|340625946|ref|YP_004744398.1| hypothetical protein MCAN_09371... 559 1e-157 gi|240171928|ref|ZP_04750587.1| Ku protein [Mycobacterium kansas... 491 4e-137 gi|296169691|ref|ZP_06851309.1| Ku family DNA end-binding protei... 487 7e-136 gi|183984544|ref|YP_001852835.1| hypothetical protein MMAR_4575 ... 485 3e-135 gi|254819342|ref|ZP_05224343.1| Ku protein [Mycobacterium intrac... 484 5e-135 gi|41406973|ref|NP_959809.1| hypothetical protein MAP0875c [Myco... 482 3e-134 gi|118464480|ref|YP_880305.1| Ku protein [Mycobacterium avium 10... 481 3e-134 gi|342860537|ref|ZP_08717188.1| Ku protein [Mycobacterium colomb... 481 5e-134 gi|118619558|ref|YP_907890.1| hypothetical protein MUL_4436 [Myc... 478 4e-133 gi|126437306|ref|YP_001072997.1| DNA end-binding protein Ku [Myc... 468 3e-130 gi|108801325|ref|YP_641522.1| DNA end-binding protein Ku [Mycoba... 468 3e-130 gi|120405867|ref|YP_955696.1| Ku domain-containing protein [Myco... 465 4e-129 gi|315442862|ref|YP_004075741.1| DNA end-binding protein Ku [Myc... 463 2e-128 gi|145222416|ref|YP_001133094.1| Ku domain-containing protein [M... 461 5e-128 gi|118471519|ref|YP_889815.1| Ku protein [Mycobacterium smegmati... 454 6e-126 gi|169628127|ref|YP_001701776.1| hypothetical protein MAB_1032c ... 433 2e-119 gi|167967536|ref|ZP_02549813.1| hypothetical protein MtubH3_0566... 410 9e-113 gi|333921833|ref|YP_004495414.1| putative DNA repair protein [Am... 340 2e-91 gi|258650394|ref|YP_003199550.1| Ku protein [Nakamurella multipa... 325 5e-87 gi|229819150|ref|YP_002880676.1| Ku protein [Beutenbergia cavern... 312 3e-83 gi|325676690|ref|ZP_08156364.1| Ku family DNA end-binding protei... 302 3e-80 gi|148273254|ref|YP_001222815.1| hypothetical protein CMM_2073 [... 302 4e-80 gi|312139634|ref|YP_004006970.1| ATP-dependent helicase [Rhodoco... 297 1e-78 gi|170781565|ref|YP_001709897.1| hypothetical protein CMS_1158 [... 297 1e-78 gi|116668863|ref|YP_829796.1| DNA end-binding protein Ku [Arthro... 295 6e-78 gi|262204349|ref|YP_003275557.1| Ku protein [Gordonia bronchiali... 293 2e-77 gi|343925397|ref|ZP_08764917.1| putative DNA end-binding protein... 292 3e-77 gi|111024152|ref|YP_707124.1| DNA binding protein, Ku-like [Rhod... 291 7e-77 gi|334337485|ref|YP_004542637.1| DNA repair protein [Isoptericol... 291 7e-77 gi|119961605|ref|YP_946104.1| Ku protein [Arthrobacter aurescens... 291 7e-77 gi|226366399|ref|YP_002784182.1| DNA end-binding protein Ku [Rho... 291 7e-77 gi|220911300|ref|YP_002486609.1| Ku protein [Arthrobacter chloro... 291 1e-76 gi|296137952|ref|YP_003645195.1| Ku protein [Tsukamurella paurom... 290 1e-76 gi|229493504|ref|ZP_04387289.1| Ku protein [Rhodococcus erythrop... 290 1e-76 gi|323359612|ref|YP_004226008.1| hypothetical protein MTES_3164 ... 290 1e-76 gi|226306549|ref|YP_002766509.1| DNA end-binding protein Ku [Rho... 290 2e-76 gi|325961869|ref|YP_004239775.1| DNA end-binding protein Ku [Art... 290 2e-76 gi|54025461|ref|YP_119703.1| hypothetical protein nfa34910 [Noca... 289 2e-76 gi|319951263|ref|ZP_08025098.1| Ku protein [Dietzia cinnamea P4]... 288 4e-76 gi|325001739|ref|ZP_08122851.1| Ku protein [Pseudonocardia sp. P1] 280 2e-73 gi|269957016|ref|YP_003326805.1| Ku protein [Xylanimonas cellulo... 279 4e-73 gi|326383589|ref|ZP_08205275.1| Ku protein [Gordonia neofelifaec... 278 7e-73 gi|296129748|ref|YP_003636998.1| Ku protein [Cellulomonas flavig... 276 3e-72 gi|269794628|ref|YP_003314083.1| DNA end-binding protein Ku [San... 275 7e-72 gi|339752243|gb|AEJ92278.1| gp197 [Mycobacterium phage Optimus] ... 274 8e-72 gi|159039872|ref|YP_001539125.1| Ku family containing protein [S... 274 9e-72 gi|119715470|ref|YP_922435.1| DNA end-binding protein Ku [Nocard... 274 1e-71 gi|332380636|gb|AEE65512.1| Ku protein [uncultured bacterium BAC... 273 3e-71 >gi|15608077|ref|NP_215452.1| hypothetical protein Rv0937c [Mycobacterium tuberculosis H37Rv] gi|15840360|ref|NP_335397.1| hypothetical protein MT0964 [Mycobacterium tuberculosis CDC1551] gi|31792126|ref|NP_854619.1| hypothetical protein Mb0962c [Mycobacterium bovis AF2122/97] 48 more sequence titles Length=273 Score = 561 bits (1447), Expect = 3e-158, Method: Compositional matrix adjust. Identities = 273/273 (100%), Positives = 273/273 (100%), Gaps = 0/273 (0%) Query 1 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL 60 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL Sbjct 1 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL 60 Query 61 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK 120 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK Sbjct 61 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK 120 Query 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV 180 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV Sbjct 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV 180 Query 181 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAFTAEDQPR 240 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAFTAEDQPR Sbjct 181 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAFTAEDQPR 240 Query 241 LLDEPEDVSDLLAKLEASVKARSKANSNVPTPP 273 LLDEPEDVSDLLAKLEASVKARSKANSNVPTPP Sbjct 241 LLDEPEDVSDLLAKLEASVKARSKANSNVPTPP 273 >gi|254363865|ref|ZP_04979911.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|308231674|ref|ZP_07413404.2| hypothetical protein TMAG_00873 [Mycobacterium tuberculosis SUMu001] gi|308370121|ref|ZP_07420356.2| hypothetical protein TMBG_01680 [Mycobacterium tuberculosis SUMu002] 26 more sequence titles Length=291 Score = 561 bits (1445), Expect = 4e-158, Method: Compositional matrix adjust. Identities = 273/273 (100%), Positives = 273/273 (100%), Gaps = 0/273 (0%) Query 1 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL 60 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL Sbjct 19 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL 78 Query 61 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK 120 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK Sbjct 79 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK 138 Query 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV 180 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV Sbjct 139 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV 198 Query 181 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAFTAEDQPR 240 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAFTAEDQPR Sbjct 199 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAFTAEDQPR 258 Query 241 LLDEPEDVSDLLAKLEASVKARSKANSNVPTPP 273 LLDEPEDVSDLLAKLEASVKARSKANSNVPTPP Sbjct 259 LLDEPEDVSDLLAKLEASVKARSKANSNVPTPP 291 >gi|340625946|ref|YP_004744398.1| hypothetical protein MCAN_09371 [Mycobacterium canettii CIPT 140010059] gi|340004136|emb|CCC43274.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059] Length=273 Score = 559 bits (1441), Expect = 1e-157, Method: Compositional matrix adjust. Identities = 272/273 (99%), Positives = 273/273 (100%), Gaps = 0/273 (0%) Query 1 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL 60 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL Sbjct 1 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL 60 Query 61 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK 120 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK Sbjct 61 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK 120 Query 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV 180 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVM+VHTLLWPDEIRDPDFPV Sbjct 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMVVHTLLWPDEIRDPDFPV 180 Query 181 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAFTAEDQPR 240 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAFTAEDQPR Sbjct 181 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAFTAEDQPR 240 Query 241 LLDEPEDVSDLLAKLEASVKARSKANSNVPTPP 273 LLDEPEDVSDLLAKLEASVKARSKANSNVPTPP Sbjct 241 LLDEPEDVSDLLAKLEASVKARSKANSNVPTPP 273 >gi|240171928|ref|ZP_04750587.1| Ku protein [Mycobacterium kansasii ATCC 12478] Length=296 Score = 491 bits (1264), Expect = 4e-137, Method: Compositional matrix adjust. Identities = 236/263 (90%), Positives = 250/263 (96%), Gaps = 0/263 (0%) Query 1 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL 60 MR+IW GSIAFGLVNVPVKVYSAT DHDI+FHQVHAKDNGRIRYKRVCE CGEVV+Y DL Sbjct 1 MRSIWKGSIAFGLVNVPVKVYSATEDHDIKFHQVHAKDNGRIRYKRVCEVCGEVVEYGDL 60 Query 61 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK 120 ARAYES DGQMV ITDDDIA+LPEERSREIEVLEFVPA +VDPMMFDRSYFLEPDSKSSK Sbjct 61 ARAYESDDGQMVIITDDDIATLPEERSREIEVLEFVPANEVDPMMFDRSYFLEPDSKSSK 120 Query 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV 180 SYVLLAKTLAE+DRMAIVHFTLRNKTRLAALRVKDFGKR+VM+VHTLLWPDEIRDPDFPV Sbjct 121 SYVLLAKTLAESDRMAIVHFTLRNKTRLAALRVKDFGKRDVMVVHTLLWPDEIRDPDFPV 180 Query 181 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAFTAEDQPR 240 LD+KVEIKPAELKMAGQVV+SMA++FNPDRY DTYQEQLQELID KLEGG+AFT E+QP Sbjct 181 LDKKVEIKPAELKMAGQVVESMAEEFNPDRYRDTYQEQLQELIDAKLEGGEAFTTEEQPT 240 Query 241 LLDEPEDVSDLLAKLEASVKARS 263 LDE EDVSDLLAKLEASVKARS Sbjct 241 ELDETEDVSDLLAKLEASVKARS 263 >gi|296169691|ref|ZP_06851309.1| Ku family DNA end-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895688|gb|EFG75384.1| Ku family DNA end-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=318 Score = 487 bits (1254), Expect = 7e-136, Method: Compositional matrix adjust. Identities = 234/263 (89%), Positives = 251/263 (96%), Gaps = 0/263 (0%) Query 1 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL 60 MR+IW GSIAFGLVNVPVKVYSAT DHDI+FHQVHAKDNGRIRY+RVCE GEVV+YRD+ Sbjct 7 MRSIWKGSIAFGLVNVPVKVYSATQDHDIKFHQVHAKDNGRIRYQRVCEVDGEVVEYRDI 66 Query 61 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK 120 ARA+ES DGQMV ITDDDIA+LPEERSREIEVLEFVPA +VDPM+FDRSYFLEPDSKSSK Sbjct 67 ARAFESDDGQMVIITDDDIATLPEERSREIEVLEFVPAEEVDPMLFDRSYFLEPDSKSSK 126 Query 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV 180 SYVLLAKTLAE DRMAIVHFTLRNKTRLAALRVKDFGKR+VMMVHTLLWPDEIRDPDFPV Sbjct 127 SYVLLAKTLAEADRMAIVHFTLRNKTRLAALRVKDFGKRDVMMVHTLLWPDEIRDPDFPV 186 Query 181 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAFTAEDQPR 240 LD++VEIKPAELKMAGQVV+SMA+DFNPDRYHDTYQEQLQELID KLEGG+AFT E+QP+ Sbjct 187 LDKEVEIKPAELKMAGQVVESMAEDFNPDRYHDTYQEQLQELIDAKLEGGEAFTTEEQPK 246 Query 241 LLDEPEDVSDLLAKLEASVKARS 263 LDE EDVSDLLAKLEASVKARS Sbjct 247 ELDETEDVSDLLAKLEASVKARS 269 >gi|183984544|ref|YP_001852835.1| hypothetical protein MMAR_4575 [Mycobacterium marinum M] gi|183177870|gb|ACC42980.1| conserved hypothetical protein [Mycobacterium marinum M] Length=291 Score = 485 bits (1249), Expect = 3e-135, Method: Compositional matrix adjust. Identities = 233/263 (89%), Positives = 249/263 (95%), Gaps = 0/263 (0%) Query 1 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL 60 MR+IW GSIAFGLVNVPVKVYSAT DHDI+FHQVHAKDNGRIRYKRVCE CGEVV+Y DL Sbjct 1 MRSIWKGSIAFGLVNVPVKVYSATQDHDIKFHQVHAKDNGRIRYKRVCEVCGEVVEYSDL 60 Query 61 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK 120 ARA+ES DGQMV I DDD+A+LPE+RSREIEVLEFVPA +VDPMM DRSYFLEPDSKSSK Sbjct 61 ARAFESDDGQMVIINDDDLATLPEDRSREIEVLEFVPAEEVDPMMIDRSYFLEPDSKSSK 120 Query 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV 180 SYVLLAKTLAET+RMAIVHFTLR+KTRLAALRVKDFGKREVM+VHTLLWPDEIRDPDFPV Sbjct 121 SYVLLAKTLAETERMAIVHFTLRSKTRLAALRVKDFGKREVMVVHTLLWPDEIRDPDFPV 180 Query 181 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAFTAEDQPR 240 LD++VEIKPAELKMAGQVV+SMADDFNPDRY DTYQEQLQELID KLEGG+AFTAE+QP Sbjct 181 LDKEVEIKPAELKMAGQVVESMADDFNPDRYRDTYQEQLQELIDAKLEGGEAFTAEEQPA 240 Query 241 LLDEPEDVSDLLAKLEASVKARS 263 LDE EDVSDLLAKLEASVKARS Sbjct 241 ELDETEDVSDLLAKLEASVKARS 263 >gi|254819342|ref|ZP_05224343.1| Ku protein [Mycobacterium intracellulare ATCC 13950] Length=309 Score = 484 bits (1247), Expect = 5e-135, Method: Compositional matrix adjust. Identities = 230/268 (86%), Positives = 251/268 (94%), Gaps = 0/268 (0%) Query 1 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL 60 MR+IW GSIAFGLVNVPVKVYSAT DHDI+FHQVHAKDNGRIRY+RVCE GEVV+YRD+ Sbjct 1 MRSIWKGSIAFGLVNVPVKVYSATQDHDIKFHQVHAKDNGRIRYQRVCEVDGEVVEYRDI 60 Query 61 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK 120 ARAYES DGQMV ITDDDIA+LPEERSREIEVLEFVPA+DVDPM+FDRSYFLEPDSKSSK Sbjct 61 ARAYESDDGQMVIITDDDIATLPEERSREIEVLEFVPASDVDPMLFDRSYFLEPDSKSSK 120 Query 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV 180 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKR+VM++HTLLWPDEIRDPDFP+ Sbjct 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKRDVMVIHTLLWPDEIRDPDFPI 180 Query 181 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAFTAEDQPR 240 LD+KVE+KPAELKMAGQVVDSMA++FNPDRYHD YQEQL EL+ KLEGG+AFT E+QP+ Sbjct 181 LDKKVEVKPAELKMAGQVVDSMAEEFNPDRYHDDYQEQLHELVQAKLEGGEAFTTEEQPK 240 Query 241 LLDEPEDVSDLLAKLEASVKARSKANSN 268 LDE EDVSDLLAKLEASVKARS + Sbjct 241 ELDETEDVSDLLAKLEASVKARSGGGNG 268 >gi|41406973|ref|NP_959809.1| hypothetical protein MAP0875c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395323|gb|AAS03192.1| hypothetical protein MAP_0875c [Mycobacterium avium subsp. paratuberculosis K-10] gi|336461309|gb|EGO40181.1| Ku protein [Mycobacterium avium subsp. paratuberculosis S397] Length=302 Score = 482 bits (1240), Expect = 3e-134, Method: Compositional matrix adjust. Identities = 230/263 (88%), Positives = 249/263 (95%), Gaps = 0/263 (0%) Query 1 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL 60 MR+IW GSIAFGLVNVPVKVYSAT DHDI+FHQVHAKDNGRIRY+RVCE GEVV+YRD+ Sbjct 1 MRSIWKGSIAFGLVNVPVKVYSATEDHDIKFHQVHAKDNGRIRYQRVCELDGEVVEYRDI 60 Query 61 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK 120 ARAYES DGQMV ITDDDIA+LPEERSREIEVLEFVPA +VDPM+FDRSYFLEPDSKSSK Sbjct 61 ARAYESDDGQMVIITDDDIATLPEERSREIEVLEFVPANEVDPMLFDRSYFLEPDSKSSK 120 Query 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV 180 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKR+VM++HTLLWPDEIRDPDFP+ Sbjct 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKRDVMVIHTLLWPDEIRDPDFPI 180 Query 181 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAFTAEDQPR 240 LD+KVEIKPAELKMAGQVV+SMA+DFNPDRYHD YQEQL EL+ KLEGG+AFT E+QP+ Sbjct 181 LDKKVEIKPAELKMAGQVVESMAEDFNPDRYHDDYQEQLHELVQAKLEGGEAFTTEEQPK 240 Query 241 LLDEPEDVSDLLAKLEASVKARS 263 LDE EDVSDLLAKLEASVKARS Sbjct 241 QLDETEDVSDLLAKLEASVKARS 263 >gi|118464480|ref|YP_880305.1| Ku protein [Mycobacterium avium 104] gi|254773933|ref|ZP_05215449.1| hypothetical protein MaviaA2_04562 [Mycobacterium avium subsp. avium ATCC 25291] gi|118165767|gb|ABK66664.1| Ku protein [Mycobacterium avium 104] Length=302 Score = 481 bits (1239), Expect = 3e-134, Method: Compositional matrix adjust. Identities = 230/263 (88%), Positives = 249/263 (95%), Gaps = 0/263 (0%) Query 1 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL 60 MR+IW GSIAFGLVNVPVKVYSAT DHDI+FHQVHAKDNGRIRY+RVCE GEVV+YRD+ Sbjct 1 MRSIWKGSIAFGLVNVPVKVYSATEDHDIKFHQVHAKDNGRIRYQRVCELDGEVVEYRDI 60 Query 61 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK 120 ARAYES DGQMV ITDDDIA+LPEERSREIEVLEFVPA +VDPM+FDRSYFLEPDSKSSK Sbjct 61 ARAYESDDGQMVIITDDDIATLPEERSREIEVLEFVPANEVDPMLFDRSYFLEPDSKSSK 120 Query 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV 180 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKR+VM++HTLLWPDEIRDPDFP+ Sbjct 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKRDVMVIHTLLWPDEIRDPDFPI 180 Query 181 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAFTAEDQPR 240 LD+KVEIKPAELKMAGQVV+SMA+DFNPDRYHD YQEQL EL+ KLEGG+AFT E+QP+ Sbjct 181 LDKKVEIKPAELKMAGQVVESMAEDFNPDRYHDDYQEQLHELVQAKLEGGEAFTTEEQPK 240 Query 241 LLDEPEDVSDLLAKLEASVKARS 263 LDE EDVSDLLAKLEASVKARS Sbjct 241 QLDETEDVSDLLAKLEASVKARS 263 >gi|342860537|ref|ZP_08717188.1| Ku protein [Mycobacterium colombiense CECT 3035] gi|342132192|gb|EGT85433.1| Ku protein [Mycobacterium colombiense CECT 3035] Length=301 Score = 481 bits (1238), Expect = 5e-134, Method: Compositional matrix adjust. Identities = 228/263 (87%), Positives = 249/263 (95%), Gaps = 0/263 (0%) Query 1 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL 60 MR+IW GSIAFGLVNVPVKVYSAT DHDI+FHQVHAKDNGRIRY+RVCE GE V+YRD+ Sbjct 1 MRSIWKGSIAFGLVNVPVKVYSATQDHDIKFHQVHAKDNGRIRYQRVCEVDGETVEYRDI 60 Query 61 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK 120 ARAYES DGQMV ITDDDIA+LPEERSREIEVLEFVPA+DVDPM+FDRSYFLEPDSKSSK Sbjct 61 ARAYESDDGQMVIITDDDIATLPEERSREIEVLEFVPASDVDPMLFDRSYFLEPDSKSSK 120 Query 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV 180 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKR+VM++HTLLWPDEIRDPDFP+ Sbjct 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKRDVMVIHTLLWPDEIRDPDFPI 180 Query 181 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAFTAEDQPR 240 LD+KVE+KPAELKMAGQVV+SMA++FNPDRYHD YQEQL EL+ KLEGG+AFT E+QP+ Sbjct 181 LDKKVEVKPAELKMAGQVVESMAEEFNPDRYHDDYQEQLHELVQAKLEGGEAFTTEEQPK 240 Query 241 LLDEPEDVSDLLAKLEASVKARS 263 LDE EDVSDLLAKLEASVKARS Sbjct 241 QLDETEDVSDLLAKLEASVKARS 263 >gi|118619558|ref|YP_907890.1| hypothetical protein MUL_4436 [Mycobacterium ulcerans Agy99] gi|118571668|gb|ABL06419.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99] Length=291 Score = 478 bits (1231), Expect = 4e-133, Method: Compositional matrix adjust. Identities = 230/263 (88%), Positives = 247/263 (94%), Gaps = 0/263 (0%) Query 1 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL 60 MR+IW GSIAFGLVNVPVKVYSAT DHDI+FHQVHAKDNGRIRYKRVCE CGEVV+Y DL Sbjct 1 MRSIWKGSIAFGLVNVPVKVYSATQDHDIKFHQVHAKDNGRIRYKRVCEVCGEVVEYSDL 60 Query 61 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK 120 ARA+ES DGQMV I DDD+A+LPE+RSREIEVLEFVPA +VDPMM DRSYFLEPDS+SSK Sbjct 61 ARAFESDDGQMVIINDDDLATLPEDRSREIEVLEFVPAEEVDPMMIDRSYFLEPDSESSK 120 Query 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV 180 SYVLLAKTLAET+RMAIVHFTLR+KTRLAALR KDFGKREVM+VHTLLW DEIRDPDFPV Sbjct 121 SYVLLAKTLAETERMAIVHFTLRSKTRLAALRAKDFGKREVMVVHTLLWLDEIRDPDFPV 180 Query 181 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAFTAEDQPR 240 LD++VEIKPAELKMAGQVV+SMADDFNPDRY DTYQEQLQELID KLEGG+AFTAE+QP Sbjct 181 LDKEVEIKPAELKMAGQVVESMADDFNPDRYRDTYQEQLQELIDAKLEGGEAFTAEEQPA 240 Query 241 LLDEPEDVSDLLAKLEASVKARS 263 LDE EDVSDLLAKLEASVKARS Sbjct 241 ELDETEDVSDLLAKLEASVKARS 263 >gi|126437306|ref|YP_001072997.1| DNA end-binding protein Ku [Mycobacterium sp. JLS] gi|126237106|gb|ABO00507.1| DNA end-binding protein Ku [Mycobacterium sp. JLS] Length=315 Score = 468 bits (1205), Expect = 3e-130, Method: Compositional matrix adjust. Identities = 220/262 (84%), Positives = 245/262 (94%), Gaps = 0/262 (0%) Query 1 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL 60 MR+IW GSIAFGLVNVPVKVYSAT DHDI+FHQVHAKDNGRIRYKR CE CGEVV+YRD+ Sbjct 1 MRSIWKGSIAFGLVNVPVKVYSATEDHDIKFHQVHAKDNGRIRYKRTCEVCGEVVEYRDI 60 Query 61 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK 120 A+A+ES DGQMV ITD+DIA+LPEERSREIEVLEFVPA+D+DP+M+DRSYFLEPD KSSK Sbjct 61 AKAFESDDGQMVVITDEDIATLPEERSREIEVLEFVPASDLDPLMYDRSYFLEPDGKSSK 120 Query 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV 180 SYVLLAKTL+ETDR+AIVHF LRNKTRLAALRVKDF KR+VMM+HTLLWPDEIRDPDFPV Sbjct 121 SYVLLAKTLSETDRVAIVHFALRNKTRLAALRVKDFSKRDVMMIHTLLWPDEIRDPDFPV 180 Query 181 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAFTAEDQPR 240 LD++VEIKPAELKMAGQVV+SM DDFNPDRYHD YQ+QL+EL++ KLEGG+AF E+QP Sbjct 181 LDKEVEIKPAELKMAGQVVESMTDDFNPDRYHDDYQDQLRELVEAKLEGGEAFAVEEQPT 240 Query 241 LLDEPEDVSDLLAKLEASVKAR 262 LDE EDVSDLLAKLEASVKAR Sbjct 241 ELDETEDVSDLLAKLEASVKAR 262 >gi|108801325|ref|YP_641522.1| DNA end-binding protein Ku [Mycobacterium sp. MCS] gi|119870476|ref|YP_940428.1| DNA end-binding protein Ku [Mycobacterium sp. KMS] gi|108771744|gb|ABG10466.1| DNA end-binding protein Ku [Mycobacterium sp. MCS] gi|119696565|gb|ABL93638.1| DNA end-binding protein Ku [Mycobacterium sp. KMS] Length=315 Score = 468 bits (1205), Expect = 3e-130, Method: Compositional matrix adjust. Identities = 220/262 (84%), Positives = 245/262 (94%), Gaps = 0/262 (0%) Query 1 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL 60 MR+IW GSIAFGLVNVPVKVYSAT DHDI+FHQVHAKDNGRIRYKR CE CGEVV+YRD+ Sbjct 1 MRSIWKGSIAFGLVNVPVKVYSATEDHDIKFHQVHAKDNGRIRYKRTCEVCGEVVEYRDI 60 Query 61 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK 120 A+A+ES DGQMV ITD+DIA+LPEERSREIEVLEFVPA+D+DP+M+DRSYFLEPD KSSK Sbjct 61 AKAFESDDGQMVVITDEDIATLPEERSREIEVLEFVPASDLDPLMYDRSYFLEPDGKSSK 120 Query 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV 180 SYVLLAKTL+ETDR+AIVHF LRNKTRLAALRVKDF KR+VMM+HTLLWPDEIRDPDFPV Sbjct 121 SYVLLAKTLSETDRVAIVHFALRNKTRLAALRVKDFSKRDVMMIHTLLWPDEIRDPDFPV 180 Query 181 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAFTAEDQPR 240 LD++VEIKPAELKMAGQVV+SM DDFNPDRYHD YQ+QL+EL++ KLEGG+AF E+QP Sbjct 181 LDKEVEIKPAELKMAGQVVESMTDDFNPDRYHDDYQDQLRELVEAKLEGGEAFAVEEQPT 240 Query 241 LLDEPEDVSDLLAKLEASVKAR 262 LDE EDVSDLLAKLEASVKAR Sbjct 241 ELDETEDVSDLLAKLEASVKAR 262 >gi|120405867|ref|YP_955696.1| Ku domain-containing protein [Mycobacterium vanbaalenii PYR-1] gi|119958685|gb|ABM15690.1| DNA end-binding protein Ku [Mycobacterium vanbaalenii PYR-1] Length=306 Score = 465 bits (1196), Expect = 4e-129, Method: Compositional matrix adjust. Identities = 220/268 (83%), Positives = 242/268 (91%), Gaps = 0/268 (0%) Query 1 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL 60 MR+IW GSIAFGLVNVPVKVYSAT DHDI+FHQVH KDNGRIRYKRVCE CGEVV+YRD+ Sbjct 1 MRSIWKGSIAFGLVNVPVKVYSATEDHDIKFHQVHDKDNGRIRYKRVCEVCGEVVEYRDI 60 Query 61 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK 120 A+AYES DGQ V ITDDDI++LPEERSREIEVLEFVPA D+DP+M+DRSYFLEPD KSSK Sbjct 61 AKAYESDDGQTVIITDDDISTLPEERSREIEVLEFVPAGDLDPLMYDRSYFLEPDGKSSK 120 Query 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV 180 SYVLLAKTL +TDR+AIV+F LRNKTRLAALRVKDF KR+VMM+HTLLWPDEIRDPDFPV Sbjct 121 SYVLLAKTLMDTDRVAIVNFALRNKTRLAALRVKDFSKRDVMMIHTLLWPDEIRDPDFPV 180 Query 181 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAFTAEDQPR 240 LD+KV++KPAELKMA QVVDSM DDFNPDRYHD YQEQL ELI KLEGG+AFT E+QP+ Sbjct 181 LDKKVDVKPAELKMASQVVDSMTDDFNPDRYHDDYQEQLHELIQAKLEGGEAFTTEEQPQ 240 Query 241 LLDEPEDVSDLLAKLEASVKARSKANSN 268 LDE EDVSDLLAKLEASVKAR + Sbjct 241 ELDETEDVSDLLAKLEASVKARKAQGTQ 268 >gi|315442862|ref|YP_004075741.1| DNA end-binding protein Ku [Mycobacterium sp. Spyr1] gi|315261165|gb|ADT97906.1| DNA end-binding protein Ku [Mycobacterium sp. Spyr1] Length=328 Score = 463 bits (1191), Expect = 2e-128, Method: Compositional matrix adjust. Identities = 218/262 (84%), Positives = 243/262 (93%), Gaps = 0/262 (0%) Query 1 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL 60 MR+IW GSIAFGLVNVPVKVYSAT DHDI+FHQVH KDNGRIRYKRVCE CGEVV+YRD+ Sbjct 1 MRSIWKGSIAFGLVNVPVKVYSATEDHDIKFHQVHEKDNGRIRYKRVCEVCGEVVEYRDI 60 Query 61 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK 120 A+AYES DGQ V ITDDDI++LPEERSREIEVLEFVPAAD+DP+M+DRSYFLEP+ KS+K Sbjct 61 AKAYESDDGQTVIITDDDISTLPEERSREIEVLEFVPAADLDPLMYDRSYFLEPEGKSTK 120 Query 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV 180 SYVLLAKTLAETDR+AIV+F LRNKTRLAALRVKDF KR+VM++HTLLWPDEIRDPDFPV Sbjct 121 SYVLLAKTLAETDRVAIVNFALRNKTRLAALRVKDFSKRDVMVIHTLLWPDEIRDPDFPV 180 Query 181 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAFTAEDQPR 240 LD+ V++KPAELKMA QVVDSM DDFNPDRYHD YQEQL+EL+ KLEGG+AFT E+QP+ Sbjct 181 LDKDVDVKPAELKMASQVVDSMTDDFNPDRYHDDYQEQLRELVQAKLEGGEAFTTEEQPQ 240 Query 241 LLDEPEDVSDLLAKLEASVKAR 262 LDE EDVSDLLAKLEASVKAR Sbjct 241 ELDESEDVSDLLAKLEASVKAR 262 >gi|145222416|ref|YP_001133094.1| Ku domain-containing protein [Mycobacterium gilvum PYR-GCK] gi|145214902|gb|ABP44306.1| Ku domain protein [Mycobacterium gilvum PYR-GCK] Length=328 Score = 461 bits (1186), Expect = 5e-128, Method: Compositional matrix adjust. Identities = 217/262 (83%), Positives = 242/262 (93%), Gaps = 0/262 (0%) Query 1 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL 60 MR+IW GSIAFGLVNVPVKVYSAT DHDI+FHQVH KDNGRIRY RVCE CGEVV+YRD+ Sbjct 1 MRSIWKGSIAFGLVNVPVKVYSATEDHDIKFHQVHEKDNGRIRYNRVCEVCGEVVEYRDI 60 Query 61 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK 120 A+AYES DGQ V ITDDDI++LPEERSREIEVLEFVPAAD+DP+M+DRSYFLEP+ KS+K Sbjct 61 AKAYESDDGQTVIITDDDISTLPEERSREIEVLEFVPAADLDPLMYDRSYFLEPEGKSTK 120 Query 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV 180 SYVLLAKTLAETDR+AIV+F LRNKTRLAALRVKDF KR+VM++HTLLWPDEIRDPDFPV Sbjct 121 SYVLLAKTLAETDRVAIVNFALRNKTRLAALRVKDFSKRDVMVIHTLLWPDEIRDPDFPV 180 Query 181 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAFTAEDQPR 240 LD+ V++KPAELKMA QVVDSM DDFNPDRYHD YQEQL+EL+ KLEGG+AFT E+QP+ Sbjct 181 LDKDVDVKPAELKMASQVVDSMTDDFNPDRYHDDYQEQLRELVQAKLEGGEAFTTEEQPQ 240 Query 241 LLDEPEDVSDLLAKLEASVKAR 262 LDE EDVSDLLAKLEASVKAR Sbjct 241 ELDESEDVSDLLAKLEASVKAR 262 >gi|118471519|ref|YP_889815.1| Ku protein [Mycobacterium smegmatis str. MC2 155] gi|118172806|gb|ABK73702.1| Ku protein [Mycobacterium smegmatis str. MC2 155] Length=328 Score = 454 bits (1168), Expect = 6e-126, Method: Compositional matrix adjust. Identities = 214/263 (82%), Positives = 243/263 (93%), Gaps = 1/263 (0%) Query 1 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL 60 MR+IW GSIAFGLVNVPVKVYSAT DHDI+FHQVHAKDNGRIRYKRVCE CGEVV+YRD+ Sbjct 11 MRSIWKGSIAFGLVNVPVKVYSATEDHDIKFHQVHAKDNGRIRYKRVCEVCGEVVEYRDI 70 Query 61 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK 120 +A+ES DGQMV ITD+DIA+LPEERSREIEV+EF+PA +DP+M+D+SYFLEPDSKSSK Sbjct 71 NKAFESDDGQMVVITDEDIATLPEERSREIEVVEFIPAEQLDPLMYDKSYFLEPDSKSSK 130 Query 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV 180 SYVLLAKTLAETDR+AIVHF+LRNK+RLAALRVKDF KR+VMM+HTLLWPDEIRDPDFP+ Sbjct 131 SYVLLAKTLAETDRIAIVHFSLRNKSRLAALRVKDFSKRDVMMIHTLLWPDEIRDPDFPI 190 Query 181 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAFTAEDQPR 240 LD++V+IKPAELKMAGQVV+SM DDF PD YHD YQEQL+EL+ KLEGG+AF+ E+QP Sbjct 191 LDKEVQIKPAELKMAGQVVESMTDDFKPDLYHDDYQEQLRELVQAKLEGGEAFSVEEQPA 250 Query 241 LLDE-PEDVSDLLAKLEASVKAR 262 LDE EDVSDLLAKLEASVKAR Sbjct 251 ELDEGTEDVSDLLAKLEASVKAR 273 >gi|169628127|ref|YP_001701776.1| hypothetical protein MAB_1032c [Mycobacterium abscessus ATCC 19977] gi|169240094|emb|CAM61122.1| Conserved hypothetical protein (Ku70/Ku80 beta-barrel domain protein?) [Mycobacterium abscessus] Length=269 Score = 433 bits (1113), Expect = 2e-119, Method: Compositional matrix adjust. Identities = 203/270 (76%), Positives = 242/270 (90%), Gaps = 3/270 (1%) Query 1 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL 60 MR+IW GS+AFGLVNVPVKVYSAT DHD++FHQVH KDNGRIRYKR CE CGEVV++RD+ Sbjct 1 MRSIWKGSLAFGLVNVPVKVYSATEDHDLKFHQVHNKDNGRIRYKRTCEECGEVVEFRDI 60 Query 61 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK 120 +AYE+ DG+ V ITD+D+ASLP E SREIEVLEF+PAA++DP+M+D+SY+LEPDSKSSK Sbjct 61 NKAYEAEDGRTVVITDEDLASLPAESSREIEVLEFIPAAELDPLMYDKSYYLEPDSKSSK 120 Query 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV 180 SYVLLA+TLA+TDR+AIVHF LRNKTRLAALRVKDFG+R+VM++HTLLWPDEIR+PDFPV Sbjct 121 SYVLLAQTLAQTDRVAIVHFALRNKTRLAALRVKDFGERQVMIIHTLLWPDEIREPDFPV 180 Query 181 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAFTAEDQPR 240 LDQ+V+IKPAEL MAGQVV+SMADDF+P RY+DTYQ QL E+++ KLEGG+AFT E+ P Sbjct 181 LDQEVKIKPAELAMAGQVVESMADDFDPSRYNDTYQSQLLEMVEAKLEGGEAFTKEEAPT 240 Query 241 LLDEPEDVSDLLAKLEASVKARS--KANSN 268 LD DVSDLLAKLEASVK R KA++N Sbjct 241 ELD-ATDVSDLLAKLEASVKKRQAEKASTN 269 >gi|167967536|ref|ZP_02549813.1| hypothetical protein MtubH3_05662 [Mycobacterium tuberculosis H37Ra] Length=203 Score = 410 bits (1055), Expect = 9e-113, Method: Compositional matrix adjust. Identities = 203/203 (100%), Positives = 203/203 (100%), Gaps = 0/203 (0%) Query 71 MVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSKSYVLLAKTLA 130 MVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSKSYVLLAKTLA Sbjct 1 MVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSKSYVLLAKTLA 60 Query 131 ETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPVLDQKVEIKPA 190 ETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPVLDQKVEIKPA Sbjct 61 ETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPVLDQKVEIKPA 120 Query 191 ELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAFTAEDQPRLLDEPEDVSD 250 ELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAFTAEDQPRLLDEPEDVSD Sbjct 121 ELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAFTAEDQPRLLDEPEDVSD 180 Query 251 LLAKLEASVKARSKANSNVPTPP 273 LLAKLEASVKARSKANSNVPTPP Sbjct 181 LLAKLEASVKARSKANSNVPTPP 203 >gi|333921833|ref|YP_004495414.1| putative DNA repair protein [Amycolicicoccus subflavus DQS3-9A1] gi|333484054|gb|AEF42614.1| putative DNA repair protein [Amycolicicoccus subflavus DQS3-9A1] Length=261 Score = 340 bits (871), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 164/264 (63%), Positives = 211/264 (80%), Gaps = 5/264 (1%) Query 1 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL 60 MR+IW G++ FGLVNVPVKVY+AT DHDI FHQVHA+D GRIRY+R+CE CG+ V++RD+ Sbjct 1 MRSIWKGALTFGLVNVPVKVYAATEDHDISFHQVHAEDRGRIRYRRICEECGKQVEFRDI 60 Query 61 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK 120 A+AY S D +MV ITD+D+AS+P++ +REIEV+EFVPA +DP+MFDR+Y+LEPD KS+K Sbjct 61 AKAYTSDDDEMVIITDEDLASIPKDITREIEVVEFVPADQLDPVMFDRAYYLEPDGKSTK 120 Query 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV 180 +Y LL KTLA TDR+AI HF LR+KTRLAALRVK +MV TLLWPDEIRDP+F Sbjct 121 AYQLLQKTLAGTDRIAIAHFALRSKTRLAALRVKG----NTLMVQTLLWPDEIRDPEFSS 176 Query 181 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAFTAEDQPR 240 L+++ +I AEL MA QVVDSM DF PD++ D YQE+L+ELI+ KL G+++T +P Sbjct 177 LEKEAKISKAELDMANQVVDSMTKDFEPDQHADEYQEKLRELIENKLAQGESYTPP-EPT 235 Query 241 LLDEPEDVSDLLAKLEASVKARSK 264 D +DVSDLLA LEA++KA S+ Sbjct 236 GEDLDKDVSDLLASLEATLKASSQ 259 >gi|258650394|ref|YP_003199550.1| Ku protein [Nakamurella multipartita DSM 44233] gi|258553619|gb|ACV76561.1| Ku protein [Nakamurella multipartita DSM 44233] Length=317 Score = 325 bits (832), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 159/271 (59%), Positives = 210/271 (78%), Gaps = 9/271 (3%) Query 1 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL 60 MR+IW GS+AFGLVNVPVK+YSAT + DIRFHQVHA+D GRI+YKRVC+ GE V Y D+ Sbjct 1 MRSIWKGSVAFGLVNVPVKLYSATEEKDIRFHQVHAQDGGRIKYKRVCDLDGEEVPYADI 60 Query 61 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK 120 A+AYES DG+ + +TD+D A LP SREI+V+ FVP+ VDP+++D++Y+LEP S S+K Sbjct 61 AKAYESDDGRTIMLTDEDFAQLPASSSREIDVVSFVPSDQVDPVLYDKTYYLEPASTSTK 120 Query 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV 180 +YVLL +TL +TDR+AIV+F LR KTRLAALRV+D +V+++ TLLWPDE+R +F Sbjct 121 AYVLLRQTLEQTDRIAIVNFALRQKTRLAALRVRD----DVLVIQTLLWPDEVRAAEFAS 176 Query 181 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAFTAEDQPR 240 L++ V IKPAELKMA +VDS ADDF+P+ Y D Y+E+LQ+LI+ KLEGG+AF ++P Sbjct 177 LEESVSIKPAELKMASMLVDSFADDFHPEDYTDEYREELQQLIEAKLEGGEAFETPEKP- 235 Query 241 LLDEPED--VSDLLAKLEASVKARSKANSNV 269 DE ED V DLLA L+ SV+ KA ++ Sbjct 236 --DEGEDAEVVDLLAALQRSVERHKKAGAST 264 >gi|229819150|ref|YP_002880676.1| Ku protein [Beutenbergia cavernae DSM 12333] gi|229565063|gb|ACQ78914.1| Ku protein [Beutenbergia cavernae DSM 12333] Length=295 Score = 312 bits (800), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 151/267 (57%), Positives = 197/267 (74%), Gaps = 5/267 (1%) Query 1 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL 60 MR+IW GS++FGLVNVPVKVYSAT DHD++FHQVH +D GRIRY+R CE CG+VV Y D+ Sbjct 1 MRSIWKGSLSFGLVNVPVKVYSATEDHDVKFHQVHNEDGGRIRYQRKCEVCGKVVSYDDI 60 Query 61 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK 120 +A++S DG+ V +TD+D +P + S EIEVL+FVP +DP++FDRSY+LEPDS+S K Sbjct 61 VKAFDSDDGERVILTDEDFEQMPAQASHEIEVLQFVPNDQIDPILFDRSYYLEPDSRSPK 120 Query 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV 180 +Y LL +TL ETDR A+VHF LR KTRLAALRV+ +V++V T+LWPDE+R+ +FP Sbjct 121 AYALLRRTLQETDRTAVVHFALRQKTRLAALRVRG----DVLLVQTMLWPDEVREVEFPS 176 Query 181 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAF-TAEDQP 239 L+ EI ELKM+ +VDSMA+DF+P+ + D Y QL+ELI+ KL GG+AF E + Sbjct 177 LEDAPEISDKELKMSASLVDSMAEDFHPEEFTDEYTVQLKELIEAKLSGGEAFQIEEKEE 236 Query 240 RLLDEPEDVSDLLAKLEASVKARSKAN 266 E DV DL+A L SV AR K Sbjct 237 EATGEDADVVDLVAALRRSVDARKKGT 263 >gi|325676690|ref|ZP_08156364.1| Ku family DNA end-binding protein [Rhodococcus equi ATCC 33707] gi|325552472|gb|EGD22160.1| Ku family DNA end-binding protein [Rhodococcus equi ATCC 33707] Length=306 Score = 302 bits (774), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 150/262 (58%), Positives = 190/262 (73%), Gaps = 5/262 (1%) Query 1 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL 60 MR+IW GSIAFGLVNVPVKVYSAT DHDIRFHQVHAKD GRI+Y RVC CG+ V + D+ Sbjct 28 MRSIWKGSIAFGLVNVPVKVYSATEDHDIRFHQVHAKDGGRIKYNRVCSECGQTVQFADI 87 Query 61 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK 120 +AY+S +G V +TD+D LP EI VL+FVP +DP++F+RSY+LEPDS S K Sbjct 88 DKAYDSDEGDRVILTDEDFDKLPAAEKHEIPVLQFVPTEQIDPILFERSYYLEPDSSSPK 147 Query 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV 180 +YVLLAKTLA+TDR A+VHFTLR KTRLAALR +D V+++ TLLWPDE+R +FP Sbjct 148 AYVLLAKTLAQTDRTALVHFTLRQKTRLAALRERD----GVLVIQTLLWPDEVRAAEFPS 203 Query 181 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKL-EGGQAFTAEDQP 239 LD E K ELKMAG +VDSMA+DF+P + D YQ QL++L+D + GG+ + Sbjct 204 LDDAEEPKAKELKMAGTLVDSMAEDFDPTEFTDDYQIQLRQLLDEAIASGGKKVIPAAER 263 Query 240 RLLDEPEDVSDLLAKLEASVKA 261 E +V DL+A L+ S++A Sbjct 264 EEGGEDAEVVDLVAALQRSLEA 285 >gi|148273254|ref|YP_001222815.1| hypothetical protein CMM_2073 [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831184|emb|CAN02136.1| conserved hypothetical protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length=349 Score = 302 bits (773), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 140/233 (61%), Positives = 179/233 (77%), Gaps = 5/233 (2%) Query 1 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL 60 MRAIW G++ FGLVNVPVKVYSAT DHD+ HQVH D GRIRY+R CE CG+VVDY + Sbjct 1 MRAIWKGAVTFGLVNVPVKVYSATQDHDVPLHQVHDADGGRIRYQRRCEVCGKVVDYAHI 60 Query 61 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK 120 +A++ GD + V IT++D++SLPEE+SREI+V+EFVP+ +DP+M DRSYFLEPDS S K Sbjct 61 DKAFDDGD-RTVVITEEDLSSLPEEKSREIDVVEFVPSDQIDPVMLDRSYFLEPDSSSPK 119 Query 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV 180 SY LL +TL ETDR AIVH TLR +TRLAALRV+ +V+M+ TLLW DE+R+ DFP Sbjct 120 SYALLRRTLQETDRTAIVHVTLRQRTRLAALRVRG----DVLMLQTLLWDDEVREADFPS 175 Query 181 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAF 233 LD ++ P ELKM+ Q+V+ A+DF+P ++ D YQEQL+ LID KL G + Sbjct 176 LDAAPKVSPRELKMSAQLVEGFAEDFDPSKFGDEYQEQLKTLIDAKLAQGDSL 228 >gi|312139634|ref|YP_004006970.1| ATP-dependent helicase [Rhodococcus equi 103S] gi|311888973|emb|CBH48286.1| putative ATP-dependent helicase [Rhodococcus equi 103S] Length=279 Score = 297 bits (761), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 149/262 (57%), Positives = 189/262 (73%), Gaps = 5/262 (1%) Query 1 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL 60 MR+IW GSIAFGLVNVPVKVYSAT DHDIRFHQVHAKD GRI+Y RVC CG+ V + D+ Sbjct 1 MRSIWKGSIAFGLVNVPVKVYSATEDHDIRFHQVHAKDGGRIKYNRVCSECGQTVQFADI 60 Query 61 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK 120 +AY+S +G V +TD+D LP EI VL+FVP +DP++F+RSY+LEPDS S K Sbjct 61 DKAYDSDEGDRVILTDEDFDKLPAAEKHEIPVLQFVPTEQIDPILFERSYYLEPDSSSPK 120 Query 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV 180 +YVLLAKTLA+TDR A+V FTLR KTRLAALR +D V+++ TLLWPDE+R +FP Sbjct 121 AYVLLAKTLAQTDRTALVDFTLRQKTRLAALRERD----GVLVIQTLLWPDEVRAAEFPS 176 Query 181 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKL-EGGQAFTAEDQP 239 LD E K ELKMAG +VDSMA+DF+P + D YQ QL++L+D + GG+ + Sbjct 177 LDDAEEPKAKELKMAGTLVDSMAEDFDPTEFTDDYQIQLRQLLDEAIASGGKKVIPAAER 236 Query 240 RLLDEPEDVSDLLAKLEASVKA 261 E +V DL+A L+ S++A Sbjct 237 AEGGEDAEVVDLVAALQRSLEA 258 >gi|170781565|ref|YP_001709897.1| hypothetical protein CMS_1158 [Clavibacter michiganensis subsp. sepedonicus] gi|169156133|emb|CAQ01273.1| conserved hypothetical protein [Clavibacter michiganensis subsp. sepedonicus] Length=339 Score = 297 bits (760), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 140/233 (61%), Positives = 179/233 (77%), Gaps = 5/233 (2%) Query 1 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL 60 MRAIW G++ FGLVNVPVKVYSAT DHD+ HQVH D GRIRY+R CE CG+VVDY + Sbjct 1 MRAIWKGAVTFGLVNVPVKVYSATQDHDVPLHQVHDADGGRIRYQRRCEVCGKVVDYAHI 60 Query 61 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK 120 +A++ GD + V IT++D+++LPEE+SREI+V+EFVP+ VDP+M DRSYFLEPDS S K Sbjct 61 DKAFDDGD-RTVVITEEDLSALPEEKSREIDVVEFVPSDQVDPVMLDRSYFLEPDSSSPK 119 Query 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV 180 SY LL +TL ETDR AIVH TLR +TRLAALRV+ +V+M+ TLLW DE+R+ DFP Sbjct 120 SYALLRRTLQETDRTAIVHVTLRQRTRLAALRVRG----DVLMLQTLLWDDEVREADFPS 175 Query 181 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAF 233 LD ++ P ELKM+ Q+V+ A+DF+P ++ D YQEQL+ LID KL G + Sbjct 176 LDAAPKVSPRELKMSAQLVEGFAEDFDPSKFSDEYQEQLKTLIDAKLAQGDSL 228 >gi|116668863|ref|YP_829796.1| DNA end-binding protein Ku [Arthrobacter sp. FB24] gi|116608972|gb|ABK01696.1| DNA end-binding protein Ku [Arthrobacter sp. FB24] Length=346 Score = 295 bits (755), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 137/236 (59%), Positives = 178/236 (76%), Gaps = 5/236 (2%) Query 1 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL 60 MRAIW G+IAFGLVNVPVKVYSAT DHDI HQVH D GRIRY+R CE CGE+VDY D+ Sbjct 1 MRAIWKGAIAFGLVNVPVKVYSATEDHDIGLHQVHGADGGRIRYQRRCEVCGEIVDYADI 60 Query 61 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK 120 +AYE DG+ V +T D++ S+P E S EIEV++FVP+ +DPMMF++SY+LEPDSKS K Sbjct 61 DKAYEE-DGRTVILTRDELKSIPAESSHEIEVVQFVPSEQLDPMMFEKSYYLEPDSKSPK 119 Query 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV 180 +YVLL + L +TDR+A+V F LR KTRL ALR+KD +V+++ +LLW DE+R+P FP Sbjct 120 AYVLLRRALEDTDRVAVVQFALREKTRLGALRIKD----DVLVLQSLLWADEVREPAFPA 175 Query 181 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAFTAE 236 L+ V I E +M+ +VDSMA DF P ++ D YQ QL++LID K+E G++ E Sbjct 176 LETTVRISAQEREMSAALVDSMAGDFEPGQFTDDYQVQLRKLIDAKIEQGESLDTE 231 >gi|262204349|ref|YP_003275557.1| Ku protein [Gordonia bronchialis DSM 43247] gi|262087696|gb|ACY23664.1| Ku protein [Gordonia bronchialis DSM 43247] Length=316 Score = 293 bits (750), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 145/268 (55%), Positives = 190/268 (71%), Gaps = 4/268 (1%) Query 1 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL 60 MR+IW G ++FGLVNVPVKVYSAT HD + QV +KD RIRY+RV E VDY D+ Sbjct 4 MRSIWKGDLSFGLVNVPVKVYSATESHDRKSFQVDSKDGTRIRYRRVREGTDTEVDYSDI 63 Query 61 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK 120 A AYE+ G+ V +T DD++SLP ++S EI +LEFVP VDP+ FD+ Y+LEP SKS K Sbjct 64 ANAYETDSGETVILTKDDLSSLPVQKSPEISILEFVPVDQVDPIYFDKPYYLEPASKSPK 123 Query 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV 180 +Y LLAK L ETDR+AI FTLRN+TR+AALRV D VM + TLLWPDE+R PDF Sbjct 124 AYALLAKALEETDRLAITSFTLRNRTRMAALRVVD----GVMTLQTLLWPDEVRKPDFGF 179 Query 181 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAFTAEDQPR 240 LD+ + I+ EL+MA ++++MA D++P + DTYQ++L +LI+ K EG +AF D Sbjct 180 LDEDISIRDQELQMASSLIETMAKDYDPSEFEDTYQKELSKLIEAKAEGTEAFPTSDDEE 239 Query 241 LLDEPEDVSDLLAKLEASVKARSKANSN 268 +DE +V+DLLA L ASVK R +S+ Sbjct 240 PVDEDSEVADLLAALRASVKDRPADDSD 267 >gi|343925397|ref|ZP_08764917.1| putative DNA end-binding protein Ku [Gordonia alkanivorans NBRC 16433] gi|343764663|dbj|GAA11843.1| putative DNA end-binding protein Ku [Gordonia alkanivorans NBRC 16433] Length=334 Score = 292 bits (748), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 148/266 (56%), Positives = 191/266 (72%), Gaps = 4/266 (1%) Query 1 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL 60 MR+IW G ++FGLVNVPVKVYSAT HD + +QV + D RIRY+RV E VDY D+ Sbjct 10 MRSIWKGDLSFGLVNVPVKVYSATESHDRKSYQVDSSDGTRIRYRRVREGTDTEVDYSDI 69 Query 61 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK 120 A AYES G+ V +T DD+A+LP ++S EI +LEFVPA VDP+ FD+ Y+LEP SKS K Sbjct 70 ANAYESESGETVILTKDDLATLPVQKSPEISILEFVPAEQVDPIYFDKPYYLEPSSKSPK 129 Query 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV 180 +YVLLAK L ETDR+AI FTLRN+TR+AALRV D VM + TLLWPDE+R PDF Sbjct 130 AYVLLAKALEETDRLAIATFTLRNRTRVAALRVVD----GVMTLQTLLWPDEVRKPDFGF 185 Query 181 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAFTAEDQPR 240 LD+ EI+ ELKMA +++SMA D++P + D YQE+L +LI+ K EG +AF D+ + Sbjct 186 LDEDTEIRDQELKMAASLIESMASDYDPSEFEDRYQEELSKLIEAKAEGSEAFPESDEEK 245 Query 241 LLDEPEDVSDLLAKLEASVKARSKAN 266 +E +V+DLLA L ASVK R ++ Sbjct 246 PEEEDSEVADLLAALRASVKDRGSSS 271 >gi|111024152|ref|YP_707124.1| DNA binding protein, Ku-like [Rhodococcus jostii RHA1] gi|110823682|gb|ABG98966.1| DNA binding protein, Ku-like [Rhodococcus jostii RHA1] Length=298 Score = 291 bits (745), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 147/260 (57%), Positives = 182/260 (70%), Gaps = 5/260 (1%) Query 1 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL 60 MR+IW GSIAFGLVNVPVKVYSAT DHDIRFHQVHAKD GRI+Y RVC CG VV Y D+ Sbjct 4 MRSIWKGSIAFGLVNVPVKVYSATEDHDIRFHQVHAKDGGRIKYNRVCSECGNVVQYADI 63 Query 61 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK 120 +AY+S DG V +TDDD LP EI VL+FVP +DP++F++SYFLEPDS S K Sbjct 64 DKAYDSDDGVRVVLTDDDFGKLPAAEKHEIPVLQFVPTEQIDPILFEKSYFLEPDSSSPK 123 Query 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV 180 +YVLLA L +DR A+VHFTLR +TRLAA+R +D V+++ TLLWPDE+R +F Sbjct 124 AYVLLATALENSDRTALVHFTLRQRTRLAAMRSRD----GVLVIQTLLWPDEVRVAEFSS 179 Query 181 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLE-GGQAFTAEDQP 239 LD + K EL MA +VDSMADDF+P + D YQ QL+EL+D +E GG+ + Sbjct 180 LDGVDKPKAKELAMAETLVDSMADDFDPTEFTDDYQVQLRELLDEMIESGGKKVIPVAEV 239 Query 240 RLLDEPEDVSDLLAKLEASV 259 E +V DL+A L+ SV Sbjct 240 EKSGEDAEVVDLVAALQRSV 259 >gi|334337485|ref|YP_004542637.1| DNA repair protein [Isoptericola variabilis 225] gi|334107853|gb|AEG44743.1| DNA repair protein [Isoptericola variabilis 225] Length=322 Score = 291 bits (745), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 148/263 (57%), Positives = 193/263 (74%), Gaps = 10/263 (3%) Query 1 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL 60 MRAIW G++ FGLVNVPVK+YSAT DHD+ HQVH D GRIRYKRVCE GEVV Y + Sbjct 1 MRAIWKGAVTFGLVNVPVKLYSATEDHDVPLHQVHDADGGRIRYKRVCELDGEVVPYEHI 60 Query 61 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK 120 RAY+ G+ V IT +D+A+LP E +REIEV+EFVP+ +DP+M+DR+Y+LEPDSKS K Sbjct 61 DRAYDDGE-HTVVITKEDLAALPAESNREIEVVEFVPSEQIDPIMYDRTYYLEPDSKSPK 119 Query 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV 180 +YVLL +TL ETDR A+V F LR +TRLAALRV+D +V+++ TLLW DE+R+PDF Sbjct 120 AYVLLRRTLEETDRTAVVKFALRQRTRLAALRVRD----DVLVLQTLLWADEVREPDFGS 175 Query 181 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAF-TAED-- 237 LD+ V++ ELKMA Q+V S DF P+ + D YQ QL++LI+ K+E G+A TAE Sbjct 176 LDEDVKVSSTELKMAQQLVTSFESDFTPEEFEDEYQVQLRQLIEAKIEQGEAVDTAETFG 235 Query 238 -QPRLLDEPEDVSDLLAKLEASV 259 +P +E +V DL+ L+ SV Sbjct 236 AKPE-GEEGAEVIDLMEALKRSV 257 >gi|119961605|ref|YP_946104.1| Ku protein [Arthrobacter aurescens TC1] gi|119948464|gb|ABM07375.1| Ku protein [Arthrobacter aurescens TC1] Length=294 Score = 291 bits (745), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 139/236 (59%), Positives = 178/236 (76%), Gaps = 5/236 (2%) Query 1 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL 60 MRAIW GSIAFGLVNVPVK+YSAT DHDI HQVH KD GRIRY+R CE C EVV Y D+ Sbjct 7 MRAIWKGSIAFGLVNVPVKLYSATEDHDIGLHQVHNKDGGRIRYQRKCEICSEVVAYEDI 66 Query 61 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK 120 +AYE +G+ V +T ++ SLPEE SREIEV+EF+PA +DP+M++RSYFLEPDSKS K Sbjct 67 DKAYEE-EGRTVVLTSAELKSLPEENSREIEVVEFIPAEQLDPIMYERSYFLEPDSKSPK 125 Query 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV 180 +Y+LL +TL +TDR+AIV + LR KTRL ALRV+ +V+++ LLW DE+R+ FP Sbjct 126 AYMLLRQTLEDTDRIAIVQYALRQKTRLGALRVRG----DVLLLQALLWGDEVREAKFPS 181 Query 181 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAFTAE 236 L+ ++I EL+M+ +V+SMA DF+PD Y D YQ QL+ LI+ KLE G+A E Sbjct 182 LETDIKISDKELEMSSALVESMAHDFDPDEYTDDYQAQLKTLIEAKLEKGEALDTE 237 >gi|226366399|ref|YP_002784182.1| DNA end-binding protein Ku [Rhodococcus opacus B4] gi|226244889|dbj|BAH55237.1| DNA end-binding protein Ku [Rhodococcus opacus B4] Length=297 Score = 291 bits (745), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 146/260 (57%), Positives = 182/260 (70%), Gaps = 5/260 (1%) Query 1 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL 60 MR+IW GSIAFGLVNVPVKVYSAT DHDIRFHQVHAKD GRI+Y RVC CG V+ Y D+ Sbjct 4 MRSIWKGSIAFGLVNVPVKVYSATEDHDIRFHQVHAKDGGRIKYNRVCSECGNVIQYADI 63 Query 61 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK 120 +AY+S DG V +TDDD LP EI VL+FVP +DP++F++SYFLEPDS S K Sbjct 64 DKAYDSDDGVRVVLTDDDFGKLPAAEKHEIPVLQFVPTEQIDPILFEKSYFLEPDSSSPK 123 Query 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV 180 +YVLLA L +DR A+VHFTLR +TRLAA+R +D V+++ TLLWPDE+R +F Sbjct 124 AYVLLATALENSDRTALVHFTLRQRTRLAAMRSRD----GVLVIQTLLWPDEVRAAEFTS 179 Query 181 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLE-GGQAFTAEDQP 239 LD + K EL MA +VDSMADDF+P + D YQ QL+EL+D +E GG+ + Sbjct 180 LDGVEKPKAKELAMAETLVDSMADDFDPTEFTDDYQVQLRELLDEMIESGGKKVIPVAEV 239 Query 240 RLLDEPEDVSDLLAKLEASV 259 E +V DL+A L+ SV Sbjct 240 EKSGEDAEVVDLVAALQRSV 259 >gi|220911300|ref|YP_002486609.1| Ku protein [Arthrobacter chlorophenolicus A6] gi|219858178|gb|ACL38520.1| Ku protein [Arthrobacter chlorophenolicus A6] Length=393 Score = 291 bits (744), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 131/233 (57%), Positives = 177/233 (76%), Gaps = 5/233 (2%) Query 1 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL 60 MRAIW G+IAFGLVNVPVKVYSAT DHDI HQVH D GRIRY+R CE CG+V+DY D+ Sbjct 1 MRAIWKGAIAFGLVNVPVKVYSATEDHDISLHQVHNADGGRIRYQRRCEVCGQVIDYSDI 60 Query 61 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK 120 +A+E DG+ V ++ D++ ++P E S EIEV++FVP+ ++PMMF++SY+LEPDSKS K Sbjct 61 EKAFEE-DGRTVVLSKDELKAIPAENSHEIEVVQFVPSEQLEPMMFEKSYYLEPDSKSPK 119 Query 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV 180 +YVLL + L +TDR+AIV + LR KTRL ALR+KD +V+++ +LLWPDE+R+ +FP Sbjct 120 AYVLLRRALEDTDRVAIVQYALREKTRLGALRIKD----DVLVLQSLLWPDEVREANFPS 175 Query 181 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAF 233 LD + I E M+ +V+SMA DF P+ + D YQ QL++LID KLE G++ Sbjct 176 LDADIRISAQERDMSAALVESMAADFEPESFTDDYQVQLRKLIDAKLEQGESL 228 >gi|296137952|ref|YP_003645195.1| Ku protein [Tsukamurella paurometabola DSM 20162] gi|296026086|gb|ADG76856.1| Ku protein [Tsukamurella paurometabola DSM 20162] Length=278 Score = 290 bits (743), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 153/267 (58%), Positives = 191/267 (72%), Gaps = 7/267 (2%) Query 1 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL 60 MRAIWTG ++FGLVNVPVKVYSA HD + HQV AKD RIRYKRV E + V++ ++ Sbjct 1 MRAIWTGELSFGLVNVPVKVYSAIESHDAKSHQVDAKDGVRIRYKRVREGTDDEVEFANI 60 Query 61 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK 120 A AYE+ G V ++ +DI S+P E+ REI V EFVP DVDP+MFD+ Y+LEP SKS K Sbjct 61 ANAYEADSGDTVILSKEDIKSMPVEKHREIAVTEFVPREDVDPIMFDKPYYLEPSSKSPK 120 Query 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV 180 +YVLL + L ETDR+AI FTLRN+TRL ALRV G VM++ TLLWPDEIR PDFP Sbjct 121 AYVLLRQALQETDRLAICTFTLRNRTRLCALRV--VGN--VMVLQTLLWPDEIRTPDFPA 176 Query 181 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAFTAEDQP- 239 L + V+I+P EL MA ++DSM+ DF+P++Y D YQ QLQ+LI+ K G AF D P Sbjct 177 LTEDVKIRPQELAMAASLIDSMSTDFDPEQYEDDYQVQLQQLIEAKSTGETAFP--DAPE 234 Query 240 RLLDEPEDVSDLLAKLEASVKARSKAN 266 DE ++V+DLLA L ASVK+R A Sbjct 235 DEGDEDDEVADLLAALRASVKSRESAK 261 >gi|229493504|ref|ZP_04387289.1| Ku protein [Rhodococcus erythropolis SK121] gi|229319465|gb|EEN85301.1| Ku protein [Rhodococcus erythropolis SK121] Length=282 Score = 290 bits (743), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 149/278 (54%), Positives = 189/278 (68%), Gaps = 9/278 (3%) Query 1 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL 60 MR+IW GSIAFGLVNVPVKVYSAT DHDIRFHQVHAKD GRI+Y RVC CG V + D+ Sbjct 4 MRSIWKGSIAFGLVNVPVKVYSATEDHDIRFHQVHAKDGGRIKYNRVCSECGNTVQFADI 63 Query 61 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK 120 +AY+S DG V ++D+D LP EI VLEFVP +DP++F++SYFLEPDS S K Sbjct 64 DKAYDSEDGSRVILSDEDFNKLPAAEKHEIPVLEFVPNDQIDPILFEKSYFLEPDSASPK 123 Query 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV 180 +YVLL+ L E+DR A+VHFTLR KTRLAA+R +D V+++ TLLWPDE+R +FP Sbjct 124 AYVLLSTVLTESDRTALVHFTLRQKTRLAAMRARD----GVLVIQTLLWPDEVRAAEFPS 179 Query 181 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLE-GGQAFTAEDQP 239 LD + K ELKMA +V+SMA DF+P + D YQ QL++L+D +E GG+ + Sbjct 180 LDDVEKPKSKELKMAQTLVESMAGDFDPTEFTDDYQLQLRQLLDEMIENGGKKVIPAAEV 239 Query 240 RLLDEPEDVSDLLAKLEASV----KARSKANSNVPTPP 273 +V DL+A L+ SV SKA S+ T P Sbjct 240 DQEGTDAEVVDLVAALQRSVDEAKSNASKAGSSKSTTP 277 >gi|323359612|ref|YP_004226008.1| hypothetical protein MTES_3164 [Microbacterium testaceum StLB037] gi|323275983|dbj|BAJ76128.1| uncharacterized conserved protein [Microbacterium testaceum StLB037] Length=284 Score = 290 bits (743), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 151/268 (57%), Positives = 192/268 (72%), Gaps = 10/268 (3%) Query 1 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL 60 MR+IW G++ FGLVNVPVKVYSAT DHD+ HQVH D GRIRY+R+CE GEVV Y D+ Sbjct 1 MRSIWKGALTFGLVNVPVKVYSATEDHDVSLHQVHNADGGRIRYQRICEIDGEVVPYSDI 60 Query 61 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK 120 +AY+ G+ Q V +T DD+ASLP ERSREIEV+EFVP+ VD + D++Y+LEPDS S K Sbjct 61 DKAYDDGE-QTVVLTKDDLASLPSERSREIEVVEFVPSDQVDLLTLDKAYYLEPDSSSPK 119 Query 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV 180 +YVLL KTL +TDR AIV F+LR KTRLAALRV+D EV+++ TLLW DE+R+ FP Sbjct 120 AYVLLRKTLEQTDRTAIVRFSLRQKTRLAALRVRD----EVLVLQTLLWADEVREAAFPA 175 Query 181 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAFTAEDQPR 240 LD+ V I EL+M+ +V+S + DF+P+ + D YQ +L+ LID KLE G A D Sbjct 176 LDESVRISAKELEMSASLVESFSKDFDPEEFTDEYQAELRTLIDAKLEQGDAIDT-DATF 234 Query 241 LLDEPED---VSDLLAKLEASVKARSKA 265 E ED V DL+ L ASV+ RS+A Sbjct 235 GTQEEEDGGEVIDLMEALRASVE-RSRA 261 >gi|226306549|ref|YP_002766509.1| DNA end-binding protein Ku [Rhodococcus erythropolis PR4] gi|226185666|dbj|BAH33770.1| DNA end-binding protein Ku [Rhodococcus erythropolis PR4] Length=282 Score = 290 bits (742), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 149/278 (54%), Positives = 189/278 (68%), Gaps = 9/278 (3%) Query 1 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL 60 MR+IW GSIAFGLVNVPVKVYSAT DHDIRFHQVHAKD GRI+Y RVC CG V + D+ Sbjct 4 MRSIWKGSIAFGLVNVPVKVYSATEDHDIRFHQVHAKDGGRIKYNRVCSECGNTVQFADI 63 Query 61 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK 120 +AY+S DG V ++D+D LP EI VLEFVP +DP++F++SYFLEPDS S K Sbjct 64 DKAYDSEDGSRVILSDEDFNKLPAAEKHEIPVLEFVPNDQIDPILFEKSYFLEPDSASPK 123 Query 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV 180 +YVLL+ L E+DR A+VHFTLR KTRLAA+R +D V+++ TLLWPDE+R +FP Sbjct 124 AYVLLSTVLTESDRTALVHFTLRQKTRLAAMRARD----GVLVIQTLLWPDEVRAAEFPS 179 Query 181 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLE-GGQAFTAEDQP 239 LD + K ELKMA +V+SMA DF+P + D YQ QL++L+D +E GG+ + Sbjct 180 LDDVEKPKAKELKMAQTLVESMAGDFDPTEFTDDYQLQLRQLLDEMIENGGKKVIPAAEV 239 Query 240 RLLDEPEDVSDLLAKLEASV----KARSKANSNVPTPP 273 +V DL+A L+ SV SKA S+ T P Sbjct 240 DQEGTDAEVVDLVAALQRSVDEAKSNASKAGSSKSTTP 277 >gi|325961869|ref|YP_004239775.1| DNA end-binding protein Ku [Arthrobacter phenanthrenivorans Sphe3] gi|323467956|gb|ADX71641.1| DNA end-binding protein Ku [Arthrobacter phenanthrenivorans Sphe3] Length=402 Score = 290 bits (741), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 134/237 (57%), Positives = 178/237 (76%), Gaps = 5/237 (2%) Query 1 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL 60 MRAIW G+IAFGLVNVPVKVYSAT DHDI HQVH D GRIRY+R CE C +V+DY D+ Sbjct 1 MRAIWKGAIAFGLVNVPVKVYSATEDHDISLHQVHNADGGRIRYQRRCEVCSQVIDYSDI 60 Query 61 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK 120 +AYE DG+ V ++ D++ ++P E S EIEV++FVP+ ++PMMF++SY+LEPDSKS K Sbjct 61 EKAYEE-DGRTVILSKDELKAIPAENSHEIEVVQFVPSEQLEPMMFEKSYYLEPDSKSPK 119 Query 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV 180 +YVLL L +TDR+AIV F LR+KTRL ALR+KD +V+++ LLWPDE+R+ DFP Sbjct 120 AYVLLRSALEDTDRVAIVQFALRDKTRLGALRIKD----DVLVLQALLWPDEVREADFPS 175 Query 181 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAFTAED 237 L+ ++I P E M+ +V+SMA DF+P + D YQ QL++LI+ KLE G A E+ Sbjct 176 LETSIKISPQERDMSAALVESMAADFDPAAFTDDYQVQLRQLIEAKLEQGDALDTEE 232 >gi|54025461|ref|YP_119703.1| hypothetical protein nfa34910 [Nocardia farcinica IFM 10152] gi|54016969|dbj|BAD58339.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=308 Score = 289 bits (740), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 140/263 (54%), Positives = 193/263 (74%), Gaps = 4/263 (1%) Query 2 RAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDLA 61 RAIW GSIAFGLVNVPVKVY+AT DHDI+FHQVHAKD GRI+Y+RVC+ G+ VDY D+A Sbjct 3 RAIWKGSIAFGLVNVPVKVYTATEDHDIKFHQVHAKDGGRIKYQRVCQIDGKPVDYVDIA 62 Query 62 RAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSKS 121 +AYES +G+ V ++D+D A LP EI VL+FVP+ +DP++FD+SY+LEPDS + K+ Sbjct 63 KAYESPEGETVILSDEDFARLPAAEKHEIPVLQFVPSEQIDPILFDKSYYLEPDSNTPKA 122 Query 122 YVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPVL 181 YVLLAKTL DR A+VHFTLR KTRLAALRV+D ++++ TLLWPDE+R +F + Sbjct 123 YVLLAKTLERIDRTALVHFTLRQKTRLAALRVRD----GMLVLQTLLWPDEVRAIEFDSV 178 Query 182 DQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAFTAEDQPRL 241 E +P E+KMA +V+SM+DDF+P ++ D YQ +L++++D +E G +P Sbjct 179 RDAAEPRPQEIKMAETLVESMSDDFDPSQFTDEYQVELKKMLDEAIERGGKVPERAEPAP 238 Query 242 LDEPEDVSDLLAKLEASVKARSK 264 + +V DL+A L+ S++A + Sbjct 239 AEMDAEVVDLVAALQRSLEASGR 261 >gi|319951263|ref|ZP_08025098.1| Ku protein [Dietzia cinnamea P4] gi|319435036|gb|EFV90321.1| Ku protein [Dietzia cinnamea P4] Length=319 Score = 288 bits (738), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 143/264 (55%), Positives = 196/264 (75%), Gaps = 5/264 (1%) Query 1 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL 60 MR+IW G ++FGLVNVPVKVY+AT DHD+ QV KD RIRYK+V + GE V++ D+ Sbjct 1 MRSIWKGEVSFGLVNVPVKVYAATEDHDLHARQVDKKDGVRIRYKKVRDDNGEEVEFSDI 60 Query 61 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK 120 A+AYES +G+MV +T +D+ASLP E++ EIEV EFVPA VDP+ FD +YFLEP S+S++ Sbjct 61 AKAYESEEGEMVILTKEDLASLPVEQNHEIEVTEFVPADQVDPVAFDNAYFLEPASRSNR 120 Query 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV 180 +YVL+ + L +TDR+AI FTLRN+TRL ALRV ++V+M+ TLLWPDEIR Sbjct 121 AYVLMREALQQTDRLAICTFTLRNRTRLCALRV----YKDVLMLQTLLWPDEIRPAILEG 176 Query 181 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAFTAED-QP 239 LD++ +++P E+KMA ++++MA DF P++Y D YQ QL+ELI+ K GG+AFT E+ + Sbjct 177 LDKEAKVRPQEVKMAASLIETMAADFEPEKYEDDYQNQLKELIEAKAAGGEAFTVEEKES 236 Query 240 RLLDEPEDVSDLLAKLEASVKARS 263 D ++V+DLLA L ASVK R Sbjct 237 SDDDGDDEVADLLAALRASVKDRG 260 >gi|325001739|ref|ZP_08122851.1| Ku protein [Pseudonocardia sp. P1] Length=336 Score = 280 bits (716), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 129/261 (50%), Positives = 189/261 (73%), Gaps = 4/261 (1%) Query 1 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL 60 MRAIW+G+++FGLV+VP+KVYSAT++HD+RFHQVH +D GRIRYKR CE CGE V Y D+ Sbjct 1 MRAIWSGAVSFGLVSVPIKVYSATSNHDVRFHQVHGEDGGRIRYKRTCEVCGEEVSYADI 60 Query 61 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK 120 + +E+ +G+++ + ++D+ASLP EI+V+EFVP +DPM+FD+SY+LEP++K++K Sbjct 61 VKGFETPEGELITLDENDLASLPVATGHEIDVIEFVPNEQIDPMLFDKSYYLEPETKAAK 120 Query 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV 180 Y LL + L ETDR A+V LR + LA LRV+D + +++ TL+WPDE+R PDF + Sbjct 121 PYALLREALNETDRTAVVKVALRQRETLALLRVRD----KAIVLQTLIWPDEVRTPDFDI 176 Query 181 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAFTAEDQPR 240 L+ VE++P EL+MA +V+SM DF+ +HD Y++ + +LI+ K G A A R Sbjct 177 LETDVELRPQELQMASSLVESMGADFDASEFHDEYRDAMVDLIEAKKSDGDARPAPAAER 236 Query 241 LLDEPEDVSDLLAKLEASVKA 261 D + +SDLL+ L+ASV A Sbjct 237 ADDGADSMSDLLSALQASVDA 257 >gi|269957016|ref|YP_003326805.1| Ku protein [Xylanimonas cellulosilytica DSM 15894] gi|269305697|gb|ACZ31247.1| Ku protein [Xylanimonas cellulosilytica DSM 15894] Length=274 Score = 279 bits (713), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 132/237 (56%), Positives = 175/237 (74%), Gaps = 5/237 (2%) Query 1 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL 60 MRAIW G++ FGLVNVPVK+YSAT DHD+ HQVH D GRIRY+RVCE G+VV Y + Sbjct 1 MRAIWKGAVTFGLVNVPVKLYSATEDHDVPLHQVHDADGGRIRYQRVCELDGKVVPYEHI 60 Query 61 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK 120 +AY+ G+ V +T DD++ LP ER REIEV+EFVP+ +DP+M DR+Y+LEPDSKS+K Sbjct 61 DKAYDDGE-HTVVLTKDDLSGLPAERDREIEVVEFVPSDQIDPIMLDRTYYLEPDSKSTK 119 Query 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV 180 +YVLL +TL ETDR A+V F LR +TRLAALRV+ +V+++ TLLW DE+R+ +FP Sbjct 120 AYVLLRRTLEETDRTAVVKFALRQRTRLAALRVRG----DVLVLQTLLWADEVREAEFPA 175 Query 181 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAFTAED 237 LD+ V++ EL M+ Q+V S DF P + D YQ QL++LID K+E G+A + D Sbjct 176 LDETVKVSAKELTMSQQLVASFEADFAPGEFEDEYQAQLRKLIDAKIEKGEAVSTAD 232 >gi|326383589|ref|ZP_08205275.1| Ku protein [Gordonia neofelifaecis NRRL B-59395] gi|326197673|gb|EGD54861.1| Ku protein [Gordonia neofelifaecis NRRL B-59395] Length=290 Score = 278 bits (710), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 142/265 (54%), Positives = 188/265 (71%), Gaps = 7/265 (2%) Query 1 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL 60 MR+IW G ++FGLVNVPVKVYSAT HD HQV + D RIRY+RV E V++ + Sbjct 1 MRSIWRGDLSFGLVNVPVKVYSATESHDRSSHQVDSADGARIRYRRVREGTDTEVEFSKI 60 Query 61 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK 120 A AYES G+ V +T DD+A LP +S EI +LEFVP VDP+ FD+ Y+LEP SKS+K Sbjct 61 ANAYESESGERVVLTKDDLAMLPVNKSPEISILEFVPIDQVDPIYFDKPYYLEPASKSAK 120 Query 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV 180 +YVLLAK L T+R+AI +FTLR++TRLAALRV D VM + TLLWPDE+R PDF Sbjct 121 AYVLLAKALETTERLAIANFTLRSRTRLAALRVID----GVMTLQTLLWPDEVRVPDFDF 176 Query 181 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAFT-AEDQP 239 L VEI+ EL MA ++++MA DF+P ++ DTYQ +L +LI+ + +G QAF+ +E++P Sbjct 177 LSSDVEIRDQELDMAASLIETMASDFDPSQFEDTYQVELGKLIEARADGSQAFSESEEEP 236 Query 240 RLLDEPEDVSDLLAKLEASVKARSK 264 D+ +V+DLLA L ASVK R + Sbjct 237 --ADDDSEVADLLAALRASVKGRGR 259 >gi|296129748|ref|YP_003636998.1| Ku protein [Cellulomonas flavigena DSM 20109] gi|296021563|gb|ADG74799.1| Ku protein [Cellulomonas flavigena DSM 20109] Length=330 Score = 276 bits (705), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 137/279 (50%), Positives = 189/279 (68%), Gaps = 10/279 (3%) Query 1 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL 60 MRAIW G++AFGLVNVPV++Y+AT +H++R HQVH +D GRIRY++VCE GE V++ D+ Sbjct 1 MRAIWKGAVAFGLVNVPVRLYAATGEHEVRLHQVHREDGGRIRYRKVCEIDGEPVEWSDI 60 Query 61 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK 120 A+ YE+ DG++V +TD D LP REIEVLEFVPA VDP++ ++Y+LEPD ++K Sbjct 61 AKGYETQDGELVVLTDQDFKQLPLSTEREIEVLEFVPADQVDPILLQKTYYLEPDKAAAK 120 Query 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV 180 Y LL L ETDR+A+V +R + +A LRV+D V+++ TLLWPDE+R+ DFPV Sbjct 121 PYALLRGALEETDRVAVVKVAIRQRESMAVLRVRD----RVIVLQTLLWPDEVREADFPV 176 Query 181 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGG--QAFTAEDQ 238 LD V ++P EL MA +V+S+A DF+P +Y D Y L+ELI K+ G QA A Q Sbjct 177 LDDDVTVRPQELTMASSLVESLAGDFDPSQYEDAYVTALEELIAAKVSSGDTQAPPAAPQ 236 Query 239 PRLLDEPEDVSDLLAKLEASVK----ARSKANSNVPTPP 273 D +V DLLA L+ SV+ AR + + + PP Sbjct 237 EDESDGGGEVVDLLAALQRSVEKARAARGEDSGDDAAPP 275 >gi|269794628|ref|YP_003314083.1| DNA end-binding protein Ku [Sanguibacter keddieii DSM 10542] gi|269096813|gb|ACZ21249.1| DNA end-binding protein Ku [Sanguibacter keddieii DSM 10542] Length=332 Score = 275 bits (702), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 141/275 (52%), Positives = 190/275 (70%), Gaps = 15/275 (5%) Query 1 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL 60 MRAIW G++ FGLVNVPVK+YSAT DHD+ HQVH D GRIRY+R CE CG+VVDY + Sbjct 1 MRAIWKGAVTFGLVNVPVKLYSATEDHDVGLHQVHDTDGGRIRYQRRCEVCGKVVDYGHI 60 Query 61 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK 120 A+AY+ G+ + V +T DD+ +LP ERSREI+V+EFVP +DP+M++ +Y+LEPDSKS K Sbjct 61 AKAYDDGE-RTVVLTPDDLDALPVERSREIDVVEFVPRDQIDPIMYEHAYYLEPDSKSVK 119 Query 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV 180 SY LL + L E+DR+A+V F+LR +TRLAALRV+ +V+++ L W DE+R+P+FP Sbjct 120 SYRLLVRVLEESDRVAVVSFSLRQRTRLAALRVRG----DVLLLQVLRWDDEVREPEFPS 175 Query 181 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAFTAEDQPR 240 LD+ I EL+MA +V S DF P+++ D YQ QL+ LID KLE G A + Sbjct 176 LDETPRITAKELEMASALVASFESDFEPEKFTDDYQVQLRTLIDAKLEHGDAV--DTAAT 233 Query 241 LLDEPE-------DVSDLLAKLEASVKARSKANSN 268 +EPE +V DL+ L SV+ RS+ S Sbjct 234 FGEEPEEDSGGDAEVVDLMEVLRRSVE-RSRGGSE 267 >gi|339752243|gb|AEJ92278.1| gp197 [Mycobacterium phage Optimus] gi|339782539|gb|AEK08262.1| gp210 [Mycobacterium phage Baka] Length=283 Score = 274 bits (701), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 135/262 (52%), Positives = 188/262 (72%), Gaps = 16/262 (6%) Query 1 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL 60 MRA+WTG++ FGLVNVPVK+Y+AT +HD++ H H +D GRIRY +VCE CGE V DL Sbjct 1 MRAVWTGAVNFGLVNVPVKMYAATEEHDLKGHLAHVQDGGRIRYHKVCETCGEQVHTADL 60 Query 61 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK 120 + +E DGQ +T++D+A LP E ++ I+V+EFVPA +VDP++ DR Y+L + S + Sbjct 61 GKVFEV-DGQTALLTNEDLAELPSETNKVIDVVEFVPAGEVDPILLDRPYYLNAEG-SVR 118 Query 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV 180 Y LLA+TL++TD++AIV TLR+K LA LRV GK EV+ + TL WPDEIR+PDFP Sbjct 119 PYALLARTLSDTDKVAIVRVTLRSKEHLAVLRVT--GKNEVLTLQTLRWPDEIREPDFPK 176 Query 181 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAFTAEDQPR 240 LD K E+ AELK+A +VD ++ FNPD+Y DTY+ +L+ L+++KLE Sbjct 177 LDNKPELSEAELKVAAMLVDELSAPFNPDKYQDTYKVELRALVESKLEP----------- 225 Query 241 LLDEPEDVSDLLAKLEASVKAR 262 ++ P+DV+DL+AKLEASVK + Sbjct 226 -VEVPDDVADLVAKLEASVKPK 246 >gi|159039872|ref|YP_001539125.1| Ku family containing protein [Salinispora arenicola CNS-205] gi|157918707|gb|ABW00135.1| Ku family containing protein [Salinispora arenicola CNS-205] Length=344 Score = 274 bits (701), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 134/271 (50%), Positives = 187/271 (70%), Gaps = 7/271 (2%) Query 1 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL 60 MRAIW G+++FGLV++ VK+YSAT + DIRFHQVH D GRIRYKR C+ CGE V Y D+ Sbjct 1 MRAIWKGAVSFGLVSIGVKLYSATEEKDIRFHQVHRDDGGRIRYKRTCQVCGEEVSYDDI 60 Query 61 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK 120 A+ Y+ G G++V +TDDD A LP SR I+VLEFVPA VDP+++++SYFLEP+ ++K Sbjct 61 AKGYDIGGGELVILTDDDFADLPLNTSRAIDVLEFVPAEQVDPILYNKSYFLEPEGTATK 120 Query 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV 180 YVLL L +++R+AIV +R + +LA LRV + V++++T+LWPDEIR PDF Sbjct 121 PYVLLRNALTDSERVAIVKVAIRQREQLATLRV----HQGVLLLNTMLWPDEIRKPDFGF 176 Query 181 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAFTAEDQPR 240 LD+ ++++P EL MA ++DSMA DF PD + D Y+ LQE+ID K+EG + E+ Sbjct 177 LDEDLKVRPPELAMASSLIDSMAGDFQPDVFTDDYRAALQEVIDAKVEGREVVQPEEA-- 234 Query 241 LLDEPEDVSDLLAKLEASVKARSKANSNVPT 271 + P DL+A L+ASV+ A P Sbjct 235 -EEAPAAAVDLMAALKASVERAQAARGEKPA 264 >gi|119715470|ref|YP_922435.1| DNA end-binding protein Ku [Nocardioides sp. JS614] gi|119536131|gb|ABL80748.1| DNA end-binding protein Ku [Nocardioides sp. JS614] Length=331 Score = 274 bits (700), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 132/268 (50%), Positives = 184/268 (69%), Gaps = 5/268 (1%) Query 1 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL 60 MRAIW G+++FGLV+VPVK+Y+AT HD+ F QVHAKD GRI+Y+RVC GE V Y D+ Sbjct 1 MRAIWKGAVSFGLVSVPVKLYAATESHDVSFRQVHAKDGGRIKYQRVCSLDGEEVAYADI 60 Query 61 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK 120 A+ YE+ DG+MV +TDDD+A LP SREI V +FVP+ +DPM+F++SY+LEP+ +K Sbjct 61 AKGYETEDGEMVVLTDDDMAELPSTSSREIAVEKFVPSEQIDPMLFEKSYYLEPEKSGAK 120 Query 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV 180 Y LL + L + DRMA+V LR +T + LRVKD +V+++ T++WPDEIR PDF V Sbjct 121 PYALLRQALLDADRMAVVTVALRQRTTVGVLRVKDADNGQVIVLQTMMWPDEIRTPDF-V 179 Query 181 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAFTAEDQPR 240 +D E+KPAE+KMA +V+++A DF+P + D Y E ++ L+ K+EGG+ + P Sbjct 180 VDAG-EVKPAEVKMANMLVETLAGDFDPAEFEDDYAEAVEALVKAKVEGGE---VKRTPT 235 Query 241 LLDEPEDVSDLLAKLEASVKARSKANSN 268 +V DLLA L+ SV A A Sbjct 236 STKSSGEVVDLLAALQRSVDAAKSARGE 263 >gi|332380636|gb|AEE65512.1| Ku protein [uncultured bacterium BAC AB649/1850] Length=312 Score = 273 bits (697), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 132/270 (49%), Positives = 190/270 (71%), Gaps = 7/270 (2%) Query 1 MRAIWTGSIAFGLVNVPVKVYSATADHDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDL 60 MRAIW G+++FGLV++ VK+YSAT + DIRFHQVH D GRI+Y+R C GEVV Y D+ Sbjct 1 MRAIWKGAVSFGLVSIAVKLYSATEEKDIRFHQVHRTDGGRIKYQRTCSVDGEVVSYDDI 60 Query 61 ARAYESGDGQMVAITDDDIASLPEERSREIEVLEFVPAADVDPMMFDRSYFLEPDSKSSK 120 A+ Y+ G G+MV +TD+D + LP SR I+VL+FVPA ++DP+MF ++Y+LEP+ +++K Sbjct 61 AKGYDIGGGEMVILTDEDFSDLPLTTSRAIDVLQFVPADEIDPIMFAKAYYLEPEGQAAK 120 Query 121 SYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDFGKREVMMVHTLLWPDEIRDPDFPV 180 YVLL LA+ DR+AIV +R + +LA LRV+D +V++++T+LWPDE+R DF Sbjct 121 PYVLLRDALADADRVAIVKIAIRQREQLATLRVRD----DVLVLNTMLWPDEVRGVDFGF 176 Query 181 LDQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQAFTAEDQPR 240 LD+++E +PAEL MA ++DSMA F PD + D Y+ LQE+ID K+EG + + E+ Sbjct 177 LDEEIETRPAELAMASSLIDSMAGSFKPDEFTDNYRAALQEVIDAKVEGREIVSPEEP-- 234 Query 241 LLDEPEDVSDLLAKLEASVKARSKANSNVP 270 + P DL+A L+ASV+ KA P Sbjct 235 -EEAPAAAVDLMAALKASVERAKKARGEAP 263 Lambda K H 0.318 0.134 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 426144143792 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40