BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0938 Length=759 Score E Sequences producing significant alignments: (Bits) Value gi|15608078|ref|NP_215453.1| ATP-dependent DNA ligase [Mycobacte... 1546 0.0 gi|15840361|ref|NP_335398.1| ATP-dependent DNA ligase [Mycobacte... 1541 0.0 gi|148822147|ref|YP_001286901.1| ATP-dependent DNA ligase [Mycob... 1540 0.0 gi|326904840|gb|EGE51773.1| ATP dependent DNA ligase [Mycobacter... 1539 0.0 gi|289752994|ref|ZP_06512372.1| ATP-dependent DNA ligase [Mycoba... 1539 0.0 gi|254363866|ref|ZP_04979912.1| hypothetical ATP dependent DNA l... 1539 0.0 gi|340625947|ref|YP_004744399.1| putative ATP dependent DNA liga... 1538 0.0 gi|289442353|ref|ZP_06432097.1| ATP dependent DNA ligase [Mycoba... 1537 0.0 gi|289749462|ref|ZP_06508840.1| ATP dependent DNA ligase [Mycoba... 1537 0.0 gi|289744669|ref|ZP_06504047.1| ATP dependent DNA ligase [Mycoba... 1536 0.0 gi|183984542|ref|YP_001852833.1| ATP dependent DNA ligase [Mycob... 1269 0.0 gi|118619556|ref|YP_907888.1| ATP-dependent DNA ligase [Mycobact... 1260 0.0 gi|254819344|ref|ZP_05224345.1| ATP-dependent DNA ligase [Mycoba... 1244 0.0 gi|240171922|ref|ZP_04750581.1| ATP-dependent DNA ligase [Mycoba... 1233 0.0 gi|296169692|ref|ZP_06851310.1| ATP-dependent DNA ligase [Mycoba... 1231 0.0 gi|41406978|ref|NP_959814.1| ATP-dependent DNA ligase [Mycobacte... 1224 0.0 gi|118467268|ref|YP_880311.1| ATP-dependent DNA ligase [Mycobact... 1224 0.0 gi|336461304|gb|EGO40176.1| DNA ligase D/DNA polymerase LigD [My... 1222 0.0 gi|254773938|ref|ZP_05215454.1| ATP-dependent DNA ligase [Mycoba... 1221 0.0 gi|342860542|ref|ZP_08717193.1| ATP-dependent DNA ligase [Mycoba... 1206 0.0 gi|289568908|ref|ZP_06449135.1| ATP dependent DNA ligase [Mycoba... 1144 0.0 gi|120405865|ref|YP_955694.1| ATP-dependent DNA ligase [Mycobact... 1095 0.0 gi|118473774|ref|YP_889805.1| ATP-dependent DNA ligase [Mycobact... 1087 0.0 gi|108801316|ref|YP_641513.1| ATP-dependent DNA ligase [Mycobact... 1067 0.0 gi|126437297|ref|YP_001072988.1| ATP-dependent DNA ligase [Mycob... 1063 0.0 gi|145222418|ref|YP_001133096.1| ATP-dependent DNA ligase [Mycob... 1049 0.0 gi|315442864|ref|YP_004075743.1| DNA ligase D/DNA polymerase Lig... 1048 0.0 gi|333989521|ref|YP_004522135.1| ATP dependent DNA ligase [Mycob... 1028 0.0 gi|169628128|ref|YP_001701777.1| ATP-dependent DNA ligase [Mycob... 994 0.0 gi|229489180|ref|ZP_04383046.1| ATP dependent DNA ligase C regio... 872 0.0 gi|226308009|ref|YP_002767969.1| ATP-dependent DNA ligase LigD [... 864 0.0 gi|226364522|ref|YP_002782304.1| ATP-dependent DNA ligase [Rhodo... 825 0.0 gi|111022015|ref|YP_704987.1| ATP-dependent DNA ligase [Rhodococ... 820 0.0 gi|312138527|ref|YP_004005863.1| ATP-dependent DNA ligase [Rhodo... 819 0.0 gi|325676187|ref|ZP_08155867.1| DNA ligase [Rhodococcus equi ATC... 815 0.0 gi|54022644|ref|YP_116886.1| ATP-dependent DNA ligase [Nocardia ... 746 0.0 gi|333921832|ref|YP_004495413.1| ATP-dependent DNA ligase LigD [... 744 0.0 gi|258650395|ref|YP_003199551.1| ATP-dependent DNA ligase [Nakam... 724 0.0 gi|296137951|ref|YP_003645194.1| DNA polymerase LigD, polymerase... 720 0.0 gi|262204350|ref|YP_003275558.1| DNA polymerase LigD [Gordonia b... 704 0.0 gi|343925398|ref|ZP_08764918.1| ATP-dependent DNA ligase LigD [G... 689 0.0 gi|336116132|ref|YP_004570898.1| DNA ligase D [Microlunatus phos... 687 0.0 gi|323359610|ref|YP_004226006.1| ATP-dependent DNA ligase [Micro... 647 0.0 gi|334337489|ref|YP_004542641.1| DNA polymerase LigD, polymerase... 642 0.0 gi|229819151|ref|YP_002880677.1| ATP-dependent DNA ligase [Beute... 640 0.0 gi|269957020|ref|YP_003326809.1| DNA polymerase LigD, polymerase... 639 0.0 gi|148273255|ref|YP_001222816.1| ATP-dependent DNA ligase [Clavi... 637 2e-180 gi|269794626|ref|YP_003314081.1| DNA ligase D/DNA polymerase Lig... 632 8e-179 gi|319951272|ref|ZP_08025107.1| ATP-dependent DNA ligase [Dietzi... 622 8e-176 gi|90108455|pdb|1VS0|A Chain A, Crystal Structure Of The Ligase ... 615 1e-173 >gi|15608078|ref|NP_215453.1| ATP-dependent DNA ligase [Mycobacterium tuberculosis H37Rv] gi|148660717|ref|YP_001282240.1| ATP-dependent DNA ligase [Mycobacterium tuberculosis H37Ra] gi|167967799|ref|ZP_02550076.1| ATP-dependent DNA ligase [Mycobacterium tuberculosis H37Ra] 11 more sequence titles Length=759 Score = 1546 bits (4004), Expect = 0.0, Method: Compositional matrix adjust. Identities = 759/759 (100%), Positives = 759/759 (100%), Gaps = 0/759 (0%) Query 1 MGSASEQRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQ 60 MGSASEQRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQ Sbjct 1 MGSASEQRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQ 60 Query 61 PAFFEKQLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAE 120 PAFFEKQLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAE Sbjct 61 PAFFEKQLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAE 120 Query 121 PGSGELNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLY 180 PGSGELNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLY Sbjct 121 PGSGELNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLY 180 Query 181 TPLDEPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAP 240 TPLDEPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAP Sbjct 181 TPLDEPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAP 240 Query 241 YSLRGRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRY 300 YSLRGRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRY Sbjct 241 YSLRGRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRY 300 Query 301 RRMRDASKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLECDGVLVSWAVPKNLPDN 360 RRMRDASKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLECDGVLVSWAVPKNLPDN Sbjct 301 RRMRDASKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLECDGVLVSWAVPKNLPDN 360 Query 361 TSVNHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNL 420 TSVNHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNL Sbjct 361 TSVNHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNL 420 Query 421 HGGRISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQWAFEG 480 HGGRISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQWAFEG Sbjct 421 HGGRISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQWAFEG 480 Query 481 KWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVP 540 KWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVP Sbjct 481 KWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVP 540 Query 541 SFSQMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSLTVPELLPGDG 600 SFSQMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSLTVPELLPGDG Sbjct 541 SFSQMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSLTVPELLPGDG 600 Query 601 AQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRSSGV 660 AQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRSSGV Sbjct 601 AQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRSSGV 660 Query 661 GSLLMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYV 720 GSLLMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYV Sbjct 661 GSLLMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYV 720 Query 721 KPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE 759 KPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE Sbjct 721 KPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE 759 >gi|15840361|ref|NP_335398.1| ATP-dependent DNA ligase [Mycobacterium tuberculosis CDC1551] gi|31792127|ref|NP_854620.1| ATP-dependent DNA ligase [Mycobacterium bovis AF2122/97] gi|121636863|ref|YP_977086.1| ATP-dependent DNA ligase [Mycobacterium bovis BCG str. Pasteur 1173P2] 51 more sequence titles Length=759 Score = 1541 bits (3991), Expect = 0.0, Method: Compositional matrix adjust. Identities = 758/759 (99%), Positives = 758/759 (99%), Gaps = 0/759 (0%) Query 1 MGSASEQRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQ 60 MGSASEQRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQ Sbjct 1 MGSASEQRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQ 60 Query 61 PAFFEKQLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAE 120 PAFFEKQLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAE Sbjct 61 PAFFEKQLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAE 120 Query 121 PGSGELNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLY 180 PGSGELNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLY Sbjct 121 PGSGELNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLY 180 Query 181 TPLDEPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAP 240 TPLDEPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAP Sbjct 181 TPLDEPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAP 240 Query 241 YSLRGRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRY 300 YSLRGRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRY Sbjct 241 YSLRGRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRY 300 Query 301 RRMRDASKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLECDGVLVSWAVPKNLPDN 360 RRMRDASKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLE DGVLVSWAVPKNLPDN Sbjct 301 RRMRDASKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLERDGVLVSWAVPKNLPDN 360 Query 361 TSVNHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNL 420 TSVNHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNL Sbjct 361 TSVNHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNL 420 Query 421 HGGRISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQWAFEG 480 HGGRISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQWAFEG Sbjct 421 HGGRISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQWAFEG 480 Query 481 KWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVP 540 KWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVP Sbjct 481 KWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVP 540 Query 541 SFSQMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSLTVPELLPGDG 600 SFSQMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSLTVPELLPGDG Sbjct 541 SFSQMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSLTVPELLPGDG 600 Query 601 AQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRSSGV 660 AQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRSSGV Sbjct 601 AQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRSSGV 660 Query 661 GSLLMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYV 720 GSLLMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYV Sbjct 661 GSLLMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYV 720 Query 721 KPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE 759 KPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE Sbjct 721 KPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE 759 >gi|148822147|ref|YP_001286901.1| ATP-dependent DNA ligase [Mycobacterium tuberculosis F11] gi|148720674|gb|ABR05299.1| hypothetical ATP dependent DNA ligase [Mycobacterium tuberculosis F11] Length=759 Score = 1540 bits (3987), Expect = 0.0, Method: Compositional matrix adjust. Identities = 757/759 (99%), Positives = 757/759 (99%), Gaps = 0/759 (0%) Query 1 MGSASEQRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQ 60 MGSASEQRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQ Sbjct 1 MGSASEQRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQ 60 Query 61 PAFFEKQLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAE 120 PAFFEKQLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAE Sbjct 61 PAFFEKQLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAE 120 Query 121 PGSGELNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLY 180 PGSGELNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLY Sbjct 121 PGSGELNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLY 180 Query 181 TPLDEPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAP 240 TPLDEPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAP Sbjct 181 TPLDEPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAP 240 Query 241 YSLRGRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRY 300 YSLRGRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRY Sbjct 241 YSLRGRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRY 300 Query 301 RRMRDASKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLECDGVLVSWAVPKNLPDN 360 RRMRDASKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLE DGVLVSWAVPKNLPDN Sbjct 301 RRMRDASKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLERDGVLVSWAVPKNLPDN 360 Query 361 TSVNHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNL 420 TSVNHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNL Sbjct 361 TSVNHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNL 420 Query 421 HGGRISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQWAFEG 480 HGGRISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQWAFEG Sbjct 421 HGGRISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQWAFEG 480 Query 481 KWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVP 540 KWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRA AEDLADHHVVLDGEAVVLDSSGVP Sbjct 481 KWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRAFAEDLADHHVVLDGEAVVLDSSGVP 540 Query 541 SFSQMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSLTVPELLPGDG 600 SFSQMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSLTVPELLPGDG Sbjct 541 SFSQMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSLTVPELLPGDG 600 Query 601 AQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRSSGV 660 AQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRSSGV Sbjct 601 AQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRSSGV 660 Query 661 GSLLMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYV 720 GSLLMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYV Sbjct 661 GSLLMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYV 720 Query 721 KPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE 759 KPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE Sbjct 721 KPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE 759 >gi|326904840|gb|EGE51773.1| ATP dependent DNA ligase [Mycobacterium tuberculosis W-148] Length=759 Score = 1539 bits (3985), Expect = 0.0, Method: Compositional matrix adjust. Identities = 757/759 (99%), Positives = 757/759 (99%), Gaps = 0/759 (0%) Query 1 MGSASEQRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQ 60 MGSASEQRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQ Sbjct 1 MGSASEQRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQ 60 Query 61 PAFFEKQLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAE 120 PAFFEKQLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWR VAE Sbjct 61 PAFFEKQLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRIVAE 120 Query 121 PGSGELNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLY 180 PGSGELNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLY Sbjct 121 PGSGELNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLY 180 Query 181 TPLDEPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAP 240 TPLDEPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAP Sbjct 181 TPLDEPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAP 240 Query 241 YSLRGRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRY 300 YSLRGRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRY Sbjct 241 YSLRGRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRY 300 Query 301 RRMRDASKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLECDGVLVSWAVPKNLPDN 360 RRMRDASKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLE DGVLVSWAVPKNLPDN Sbjct 301 RRMRDASKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLERDGVLVSWAVPKNLPDN 360 Query 361 TSVNHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNL 420 TSVNHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNL Sbjct 361 TSVNHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNL 420 Query 421 HGGRISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQWAFEG 480 HGGRISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQWAFEG Sbjct 421 HGGRISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQWAFEG 480 Query 481 KWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVP 540 KWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVP Sbjct 481 KWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVP 540 Query 541 SFSQMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSLTVPELLPGDG 600 SFSQMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSLTVPELLPGDG Sbjct 541 SFSQMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSLTVPELLPGDG 600 Query 601 AQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRSSGV 660 AQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRSSGV Sbjct 601 AQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRSSGV 660 Query 661 GSLLMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYV 720 GSLLMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYV Sbjct 661 GSLLMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYV 720 Query 721 KPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE 759 KPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE Sbjct 721 KPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE 759 >gi|289752994|ref|ZP_06512372.1| ATP-dependent DNA ligase [Mycobacterium tuberculosis EAS054] gi|289693581|gb|EFD61010.1| ATP-dependent DNA ligase [Mycobacterium tuberculosis EAS054] Length=759 Score = 1539 bits (3984), Expect = 0.0, Method: Compositional matrix adjust. Identities = 757/759 (99%), Positives = 757/759 (99%), Gaps = 0/759 (0%) Query 1 MGSASEQRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQ 60 MGSASEQRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQ Sbjct 1 MGSASEQRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQ 60 Query 61 PAFFEKQLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAE 120 PAFFEKQLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAE Sbjct 61 PAFFEKQLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAE 120 Query 121 PGSGELNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLY 180 PGSGELNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLY Sbjct 121 PGSGELNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLY 180 Query 181 TPLDEPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAP 240 TPLDEPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAP Sbjct 181 TPLDEPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAP 240 Query 241 YSLRGRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRY 300 YSLRGRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRY Sbjct 241 YSLRGRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRY 300 Query 301 RRMRDASKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLECDGVLVSWAVPKNLPDN 360 RRMRDASKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLE DGVLVSWAVPKNLPDN Sbjct 301 RRMRDASKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLERDGVLVSWAVPKNLPDN 360 Query 361 TSVNHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNL 420 TSVNHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNL Sbjct 361 TSVNHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNL 420 Query 421 HGGRISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQWAFEG 480 HGGRISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQWAFEG Sbjct 421 HGGRISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQWAFEG 480 Query 481 KWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVP 540 KWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVP Sbjct 481 KWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVP 540 Query 541 SFSQMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSLTVPELLPGDG 600 SFSQMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSLTVPELLPGDG Sbjct 541 SFSQMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSLTVPELLPGDG 600 Query 601 AQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRSSGV 660 AQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGG SSGV Sbjct 601 AQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGHSSGV 660 Query 661 GSLLMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYV 720 GSLLMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYV Sbjct 661 GSLLMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYV 720 Query 721 KPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE 759 KPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE Sbjct 721 KPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE 759 >gi|254363866|ref|ZP_04979912.1| hypothetical ATP dependent DNA ligase [Mycobacterium tuberculosis str. Haarlem] gi|134149380|gb|EBA41425.1| hypothetical ATP dependent DNA ligase [Mycobacterium tuberculosis str. Haarlem] Length=759 Score = 1539 bits (3984), Expect = 0.0, Method: Compositional matrix adjust. Identities = 757/759 (99%), Positives = 757/759 (99%), Gaps = 0/759 (0%) Query 1 MGSASEQRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQ 60 MGSASEQRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQ Sbjct 1 MGSASEQRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQ 60 Query 61 PAFFEKQLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAE 120 PAFFEKQLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAE Sbjct 61 PAFFEKQLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAE 120 Query 121 PGSGELNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLY 180 PGSGELNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLY Sbjct 121 PGSGELNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLY 180 Query 181 TPLDEPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAP 240 TPLDEPVSSRGATVLAKRVAQRLEQAM ALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAP Sbjct 181 TPLDEPVSSRGATVLAKRVAQRLEQAMSALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAP 240 Query 241 YSLRGRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRY 300 YSLRGRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRY Sbjct 241 YSLRGRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRY 300 Query 301 RRMRDASKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLECDGVLVSWAVPKNLPDN 360 RRMRDASKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLE DGVLVSWAVPKNLPDN Sbjct 301 RRMRDASKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLERDGVLVSWAVPKNLPDN 360 Query 361 TSVNHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNL 420 TSVNHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNL Sbjct 361 TSVNHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNL 420 Query 421 HGGRISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQWAFEG 480 HGGRISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQWAFEG Sbjct 421 HGGRISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQWAFEG 480 Query 481 KWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVP 540 KWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVP Sbjct 481 KWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVP 540 Query 541 SFSQMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSLTVPELLPGDG 600 SFSQMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSLTVPELLPGDG Sbjct 541 SFSQMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSLTVPELLPGDG 600 Query 601 AQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRSSGV 660 AQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRSSGV Sbjct 601 AQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRSSGV 660 Query 661 GSLLMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYV 720 GSLLMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYV Sbjct 661 GSLLMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYV 720 Query 721 KPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE 759 KPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE Sbjct 721 KPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE 759 >gi|340625947|ref|YP_004744399.1| putative ATP dependent DNA ligase [Mycobacterium canettii CIPT 140010059] gi|340004137|emb|CCC43275.1| putative ATP dependent DNA ligase (ATP dependent polydeoxyribonucleotide synthase) (thermostable DNA ligase) (ATP dependent polynucleotide ligase) (sealase) (DNA repair enzyme) (DNA joinase) [Mycobacterium canettii CIPT 140010059] Length=759 Score = 1538 bits (3982), Expect = 0.0, Method: Compositional matrix adjust. Identities = 755/759 (99%), Positives = 758/759 (99%), Gaps = 0/759 (0%) Query 1 MGSASEQRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQ 60 MGSASEQRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQ Sbjct 1 MGSASEQRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQ 60 Query 61 PAFFEKQLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAE 120 PAFFEKQLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAE Sbjct 61 PAFFEKQLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAE 120 Query 121 PGSGELNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLY 180 PGSGELNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLY Sbjct 121 PGSGELNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLY 180 Query 181 TPLDEPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAP 240 TPLDEPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAP Sbjct 181 TPLDEPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAP 240 Query 241 YSLRGRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRY 300 YSLRGRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRY Sbjct 241 YSLRGRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRY 300 Query 301 RRMRDASKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLECDGVLVSWAVPKNLPDN 360 RRMRDASKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLE DGVLVSWAVPKNLPDN Sbjct 301 RRMRDASKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLERDGVLVSWAVPKNLPDN 360 Query 361 TSVNHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNL 420 TSVNHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNL Sbjct 361 TSVNHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNL 420 Query 421 HGGRISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQWAFEG 480 HGGRISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQWAFEG Sbjct 421 HGGRISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQWAFEG 480 Query 481 KWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVP 540 KWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVP Sbjct 481 KWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVP 540 Query 541 SFSQMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSLTVPELLPGDG 600 SFSQMQNRGR+TRVEFWAFDLLYLDGR+LLGTRYQDRRKLLETLANATSLTVPELLPGDG Sbjct 541 SFSQMQNRGRNTRVEFWAFDLLYLDGRSLLGTRYQDRRKLLETLANATSLTVPELLPGDG 600 Query 601 AQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRSSGV 660 AQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRSSGV Sbjct 601 AQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRSSGV 660 Query 661 GSLLMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYV 720 GSLLMGIPGPGGLQFAGRVGTGL+ERELANLKEMLAPLHTDESPFDVPLPARDAKGITYV Sbjct 661 GSLLMGIPGPGGLQFAGRVGTGLTERELANLKEMLAPLHTDESPFDVPLPARDAKGITYV 720 Query 721 KPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE 759 KPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE Sbjct 721 KPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE 759 >gi|289442353|ref|ZP_06432097.1| ATP dependent DNA ligase [Mycobacterium tuberculosis T46] gi|289415272|gb|EFD12512.1| ATP dependent DNA ligase [Mycobacterium tuberculosis T46] Length=759 Score = 1537 bits (3980), Expect = 0.0, Method: Compositional matrix adjust. Identities = 756/759 (99%), Positives = 756/759 (99%), Gaps = 0/759 (0%) Query 1 MGSASEQRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQ 60 MGSASEQRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQ Sbjct 1 MGSASEQRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQ 60 Query 61 PAFFEKQLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAE 120 PAFFEKQLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAE Sbjct 61 PAFFEKQLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAE 120 Query 121 PGSGELNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLY 180 PGSGELNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLY Sbjct 121 PGSGELNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLY 180 Query 181 TPLDEPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAP 240 TPLDEPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAP Sbjct 181 TPLDEPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAP 240 Query 241 YSLRGRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRY 300 YSLRGRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRY Sbjct 241 YSLRGRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRY 300 Query 301 RRMRDASKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLECDGVLVSWAVPKNLPDN 360 RRMRD SKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLE DGVLVSWAVPKNLPDN Sbjct 301 RRMRDTSKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLERDGVLVSWAVPKNLPDN 360 Query 361 TSVNHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNL 420 TSVNHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNL Sbjct 361 TSVNHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNL 420 Query 421 HGGRISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQWAFEG 480 HGGRISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQWAFEG Sbjct 421 HGGRISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQWAFEG 480 Query 481 KWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVP 540 KWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVP Sbjct 481 KWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVP 540 Query 541 SFSQMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSLTVPELLPGDG 600 SFSQMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSLTVPELLPGDG Sbjct 541 SFSQMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSLTVPELLPGDG 600 Query 601 AQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRSSGV 660 AQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGG SSGV Sbjct 601 AQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGHSSGV 660 Query 661 GSLLMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYV 720 GSLLMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYV Sbjct 661 GSLLMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYV 720 Query 721 KPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE 759 KPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE Sbjct 721 KPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE 759 >gi|289749462|ref|ZP_06508840.1| ATP dependent DNA ligase [Mycobacterium tuberculosis T92] gi|289690049|gb|EFD57478.1| ATP dependent DNA ligase [Mycobacterium tuberculosis T92] Length=759 Score = 1537 bits (3979), Expect = 0.0, Method: Compositional matrix adjust. Identities = 756/759 (99%), Positives = 756/759 (99%), Gaps = 0/759 (0%) Query 1 MGSASEQRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQ 60 MGS SEQRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQ Sbjct 1 MGSVSEQRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQ 60 Query 61 PAFFEKQLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAE 120 PAFFEKQLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAE Sbjct 61 PAFFEKQLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAE 120 Query 121 PGSGELNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLY 180 PGSGELNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLY Sbjct 121 PGSGELNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLY 180 Query 181 TPLDEPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAP 240 TPLDEPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAP Sbjct 181 TPLDEPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAP 240 Query 241 YSLRGRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRY 300 YSLRGRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRY Sbjct 241 YSLRGRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRY 300 Query 301 RRMRDASKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLECDGVLVSWAVPKNLPDN 360 RRMRDASKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLE DGVLVSWAVPKNLPDN Sbjct 301 RRMRDASKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLERDGVLVSWAVPKNLPDN 360 Query 361 TSVNHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNL 420 TSVNHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNL Sbjct 361 TSVNHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNL 420 Query 421 HGGRISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQWAFEG 480 HGGRISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQWAFEG Sbjct 421 HGGRISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQWAFEG 480 Query 481 KWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVP 540 KWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVP Sbjct 481 KWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVP 540 Query 541 SFSQMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSLTVPELLPGDG 600 SFSQMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSLTVPELLPGDG Sbjct 541 SFSQMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSLTVPELLPGDG 600 Query 601 AQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRSSGV 660 AQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGG SSGV Sbjct 601 AQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGHSSGV 660 Query 661 GSLLMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYV 720 GSLLMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYV Sbjct 661 GSLLMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYV 720 Query 721 KPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE 759 KPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE Sbjct 721 KPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE 759 >gi|289744669|ref|ZP_06504047.1| ATP dependent DNA ligase [Mycobacterium tuberculosis 02_1987] gi|289685197|gb|EFD52685.1| ATP dependent DNA ligase [Mycobacterium tuberculosis 02_1987] Length=759 Score = 1536 bits (3978), Expect = 0.0, Method: Compositional matrix adjust. Identities = 756/759 (99%), Positives = 756/759 (99%), Gaps = 0/759 (0%) Query 1 MGSASEQRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQ 60 MGSASEQRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQ Sbjct 1 MGSASEQRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQ 60 Query 61 PAFFEKQLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAE 120 PAFFEKQLALSAPPWLSRATVA RSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAE Sbjct 61 PAFFEKQLALSAPPWLSRATVAQRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAE 120 Query 121 PGSGELNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLY 180 PGSGELNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLA IGLVTFPVTSGSKGLHLY Sbjct 121 PGSGELNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLAAIGLVTFPVTSGSKGLHLY 180 Query 181 TPLDEPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAP 240 TPLDEPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAP Sbjct 181 TPLDEPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAP 240 Query 241 YSLRGRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRY 300 YSLRGRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRY Sbjct 241 YSLRGRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRY 300 Query 301 RRMRDASKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLECDGVLVSWAVPKNLPDN 360 RRMRDASKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLE DGVLVSWAVPKNLPDN Sbjct 301 RRMRDASKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLERDGVLVSWAVPKNLPDN 360 Query 361 TSVNHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNL 420 TSVNHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNL Sbjct 361 TSVNHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNL 420 Query 421 HGGRISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQWAFEG 480 HGGRISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQWAFEG Sbjct 421 HGGRISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQWAFEG 480 Query 481 KWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVP 540 KWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVP Sbjct 481 KWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVP 540 Query 541 SFSQMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSLTVPELLPGDG 600 SFSQMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSLTVPELLPGDG Sbjct 541 SFSQMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSLTVPELLPGDG 600 Query 601 AQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRSSGV 660 AQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRSSGV Sbjct 601 AQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRSSGV 660 Query 661 GSLLMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYV 720 GSLLMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYV Sbjct 661 GSLLMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYV 720 Query 721 KPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE 759 KPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE Sbjct 721 KPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE 759 >gi|183984542|ref|YP_001852833.1| ATP dependent DNA ligase [Mycobacterium marinum M] gi|183177868|gb|ACC42978.1| ATP dependent DNA ligase [Mycobacterium marinum M] Length=770 Score = 1269 bits (3283), Expect = 0.0, Method: Compositional matrix adjust. Identities = 623/764 (82%), Positives = 676/764 (89%), Gaps = 9/764 (1%) Query 2 GSASEQRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQP 61 G A+ +VTLTNADKVLYPATGTTKSD+F YY G+AEVM+ HIAGRPATRKRWPNGVDQ Sbjct 10 GQANGPQVTLTNADKVLYPATGTTKSDVFGYYTGIAEVMIPHIAGRPATRKRWPNGVDQA 69 Query 62 AFFEKQLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAE- 120 +FFEKQLA SAP WL RA+V HRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAE Sbjct 70 SFFEKQLASSAPDWLPRASVVHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAEW 129 Query 121 PGSGE-LNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHL 179 GE L PGPATRLVFDLDPGEGV MAQLA+VARAVRDLLADIGL T P+TSGSKGLHL Sbjct 130 TSKGEILTPGPATRLVFDLDPGEGVTMAQLAQVARAVRDLLADIGLSTLPLTSGSKGLHL 189 Query 180 YTPLDEPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIA 239 YTPLDEPVSS+GATVLAKRVAQ+LE MPALVT+TMTKSLRAGKVF+DWSQNSGSKTTIA Sbjct 190 YTPLDEPVSSKGATVLAKRVAQQLETVMPALVTATMTKSLRAGKVFLDWSQNSGSKTTIA 249 Query 240 PYSLRGRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTR 299 PYSLRGR PTVAAPR+W ELDDP LRQL+YDEVL R+ RDGDL+ LDAD P DRL + Sbjct 250 PYSLRGREQPTVAAPRSWEELDDPGLRQLTYDEVLARLTRDGDLIAALDADLPGDDRLLK 309 Query 300 YRRMRDASKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLECDGVLVSWAVPKNLPD 359 YR MR+ASKTPEP+P A+PV G GNTFVIQEHHARR HYDFRLE DGVLVSWAVPKNLP+ Sbjct 310 YRSMRNASKTPEPVPRARPVVGQGNTFVIQEHHARRLHYDFRLERDGVLVSWAVPKNLPE 369 Query 360 NTSVNHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTG----E 415 TSVNHLA+HTEDHPLEYATFEG IP GEYGAGKVIIWDSGTYDTEKF DD G E Sbjct 370 TTSVNHLAVHTEDHPLEYATFEGNIPKGEYGAGKVIIWDSGTYDTEKFRDDSRNGSEKGE 429 Query 416 VIVNLHGGRISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQ 475 VIVNLHG RISGRYALI+TNGD+WLAHR+K DQ F+FD LAPML +HG+VAGL++ Q Sbjct 430 VIVNLHGSRISGRYALIQTNGDQWLAHRMK---DQTAFDFDTLAPMLTSHGSVAGLESGQ 486 Query 476 WAFEGKWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLD 535 WAFEGKWDGYRLLVEADHGA+RLRSRSGRDVTAEYPQLR+LA DLADHHVVLDGE V LD Sbjct 487 WAFEGKWDGYRLLVEADHGALRLRSRSGRDVTAEYPQLRSLAADLADHHVVLDGELVALD 546 Query 536 SSGVPSFSQMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSLTVPEL 595 SSGVPSF++MQNR R TR+EFWAFDLL+LDGR+LL RY+DRRKLLETL +A +L VPEL Sbjct 547 SSGVPSFNEMQNRVRATRIEFWAFDLLFLDGRSLLRARYRDRRKLLETLGSAGNLIVPEL 606 Query 596 LPGDGAQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGG 655 LPGDGA+A A S K GWEGVIAKRRDS YQPGRR ++W+KDKHWNTQEVVIGGWR GEGG Sbjct 607 LPGDGAEALAYSHKRGWEGVIAKRRDSGYQPGRRSSAWIKDKHWNTQEVVIGGWRVGEGG 666 Query 656 RSSGVGSLLMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAK 715 RSSG+GSLLMGIPGP GL FAGRVGTG +ER+LANLK+ LAPLHTDESPFD LPAR+AK Sbjct 667 RSSGIGSLLMGIPGPSGLHFAGRVGTGFTERDLANLKKTLAPLHTDESPFDAALPAREAK 726 Query 716 GITYVKPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE 759 G+T+V P LV EVRYSEWTP+ RLRQSSWRGLRPDK PSEVVRE Sbjct 727 GVTFVAPTLVGEVRYSEWTPDDRLRQSSWRGLRPDKNPSEVVRE 770 >gi|118619556|ref|YP_907888.1| ATP-dependent DNA ligase [Mycobacterium ulcerans Agy99] gi|118571666|gb|ABL06417.1| ATP dependent DNA ligase [Mycobacterium ulcerans Agy99] Length=770 Score = 1260 bits (3260), Expect = 0.0, Method: Compositional matrix adjust. Identities = 620/764 (82%), Positives = 673/764 (89%), Gaps = 9/764 (1%) Query 2 GSASEQRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQP 61 G A+ +VTLTNADKVLYPATGTTKSD+F YY G+AEVM+ HIAGRPATRKRWPNGVDQ Sbjct 10 GQANGPQVTLTNADKVLYPATGTTKSDVFGYYTGIAEVMIPHIAGRPATRKRWPNGVDQA 69 Query 62 AFFEKQLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAE- 120 +FFEKQLA SAP WL RA+V HRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAE Sbjct 70 SFFEKQLASSAPDWLPRASVVHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAEW 129 Query 121 PGSGE-LNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHL 179 GE L PGPATRLVFDLDPGEGV MAQLA+VARAVRDLLADIGL T P+TSGSKGLH Sbjct 130 TSKGEILTPGPATRLVFDLDPGEGVTMAQLAQVARAVRDLLADIGLSTLPLTSGSKGLHF 189 Query 180 YTPLDEPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIA 239 YTPLDEPVSS+GATVLAKRVAQ+LE MPALVT+TMTKSLRAGKVF+DWSQNSGSKTTIA Sbjct 190 YTPLDEPVSSKGATVLAKRVAQQLETVMPALVTATMTKSLRAGKVFLDWSQNSGSKTTIA 249 Query 240 PYSLRGRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTR 299 PYSLRGR PTVAAPR+W ELDDP LRQL+YDEVL R+ RDGDL+ LDAD P DRL + Sbjct 250 PYSLRGREQPTVAAPRSWEELDDPGLRQLTYDEVLARLTRDGDLIAALDADLPGDDRLLK 309 Query 300 YRRMRDASKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLECDGVLVSWAVPKNLPD 359 YR MR+ASKTPEP+P A+PV G GNTFVIQEHHARR H DFRLE DGVLVSWAVPKNLP+ Sbjct 310 YRSMRNASKTPEPVPRARPVVGQGNTFVIQEHHARRLHDDFRLERDGVLVSWAVPKNLPE 369 Query 360 NTSVNHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTG----E 415 TSVNHLA+HTEDHPLEYATFEG IP GEYGAGKVIIWDSGTYDTEKF DD G E Sbjct 370 TTSVNHLAVHTEDHPLEYATFEGNIPKGEYGAGKVIIWDSGTYDTEKFRDDSRNGAEKGE 429 Query 416 VIVNLHGGRISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQ 475 VIVNLHG RISGRYALI+TNGD+WLAHR+K DQ F+FD LAPML +HG+VAGL++ Q Sbjct 430 VIVNLHGSRISGRYALIQTNGDQWLAHRMK---DQTAFDFDTLAPMLTSHGSVAGLESGQ 486 Query 476 WAFEGKWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLD 535 WAFEGKWDGYRLLVEADHGA+RLRSRSGRDVT EYPQLR+LA DLADHHVVLDGE V LD Sbjct 487 WAFEGKWDGYRLLVEADHGALRLRSRSGRDVTTEYPQLRSLAADLADHHVVLDGELVALD 546 Query 536 SSGVPSFSQMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSLTVPEL 595 SSGVPSF++MQNR R TR+EFWAFDLL+LDGR+LL RY+DRRKLLETL +A +L VPEL Sbjct 547 SSGVPSFNEMQNRVRATRIEFWAFDLLFLDGRSLLRARYRDRRKLLETLGSAGNLIVPEL 606 Query 596 LPGDGAQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGG 655 LPGDGA+A A S K GWEGVIAKRRDS YQPGRR ++W+KDKHWNTQEVVIGGWR GEGG Sbjct 607 LPGDGAEALAYSHKRGWEGVIAKRRDSGYQPGRRSSAWIKDKHWNTQEVVIGGWRVGEGG 666 Query 656 RSSGVGSLLMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAK 715 RSSG+GSLLMGIPGP GL FAGRVGTG +ER+LANLK+ LAPLHTDESPFD LPAR+AK Sbjct 667 RSSGIGSLLMGIPGPSGLHFAGRVGTGFTERDLANLKKTLAPLHTDESPFDAALPAREAK 726 Query 716 GITYVKPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE 759 G+T+V P LV EVRYSEWTP+ RLRQSSWRGLRPDK PSEVVRE Sbjct 727 GVTFVVPTLVGEVRYSEWTPDDRLRQSSWRGLRPDKNPSEVVRE 770 >gi|254819344|ref|ZP_05224345.1| ATP-dependent DNA ligase [Mycobacterium intracellulare ATCC 13950] Length=759 Score = 1244 bits (3219), Expect = 0.0, Method: Compositional matrix adjust. Identities = 605/762 (80%), Positives = 667/762 (88%), Gaps = 6/762 (0%) Query 1 MGSASEQRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQ 60 M + RV LTNA+KVLYPATGTTKSDIFDYY +AEVM+ HIAGRPATRKRWPNGV+Q Sbjct 1 MSPTAGPRVKLTNAEKVLYPATGTTKSDIFDYYTRIAEVMIPHIAGRPATRKRWPNGVEQ 60 Query 61 PAFFEKQLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAE 120 +FFEKQLA SAP WL RA+V HRSGTTTYPIID TGLAWIAQQAALEVHVPQWRFVAE Sbjct 61 ESFFEKQLAASAPDWLPRASVTHRSGTTTYPIIDDPTGLAWIAQQAALEVHVPQWRFVAE 120 Query 121 ---PGSGELNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGL 177 + EL PGPATRLVFDLDPGEGV MAQ+++VARAVRDL+A IGL TFP+TSGSKGL Sbjct 121 WTRSRAEELKPGPATRLVFDLDPGEGVTMAQMSKVARAVRDLIAGIGLRTFPLTSGSKGL 180 Query 178 HLYTPLDEPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTT 237 HLY PLDEPVSS+GATVLAKRVAQ+LE+ MP LVTSTMTKSLRAGK+F+DWSQN+GSKTT Sbjct 181 HLYAPLDEPVSSKGATVLAKRVAQQLEKTMPKLVTSTMTKSLRAGKIFLDWSQNNGSKTT 240 Query 238 IAPYSLRGRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRL 297 IAPYSLRGR HPTVAAPRTW ELDDP+LRQL YDEVL+R+ARDGDLL LD DAPV DRL Sbjct 241 IAPYSLRGREHPTVAAPRTWDELDDPSLRQLRYDEVLSRVARDGDLLAELDEDAPVPDRL 300 Query 298 TRYRRMRDASKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLECDGVLVSWAVPKNL 357 T+YR MRDASKTPEP+P AKP G GNTFVIQEHHARR HYDFRLE DGVLVSWAVPKNL Sbjct 301 TKYRSMRDASKTPEPVPAAKPAVGQGNTFVIQEHHARRLHYDFRLERDGVLVSWAVPKNL 360 Query 358 PDNTSVNHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVI 417 P+ TSVNHLA+HTEDHPLEY FEG IP GEYGAGKVIIWDSGTYD EKF+D GEVI Sbjct 361 PETTSVNHLAVHTEDHPLEYGGFEGVIPKGEYGAGKVIIWDSGTYDAEKFNDSAEKGEVI 420 Query 418 VNLHGGRISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQWA 477 VNLHG +ISGRYALI+TNGD+WLAHR+ KDQKVFEFD +APMLATHG+V LKA QWA Sbjct 421 VNLHGSKISGRYALIQTNGDQWLAHRM---KDQKVFEFDTIAPMLATHGSVTALKAGQWA 477 Query 478 FEGKWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSS 537 FEGKWDGYRLL+EADHGA R+RSR GR+VT EY +LR LA+DLADHHVVLDGEAVVLDSS Sbjct 478 FEGKWDGYRLLIEADHGAFRVRSRRGREVTQEYRELRWLADDLADHHVVLDGEAVVLDSS 537 Query 538 GVPSFSQMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSLTVPELLP 597 GVP+F +MQNRGR +RVEFWAFDLLYLDGR+LL RY+DRRKLLE LA + L VP+LLP Sbjct 538 GVPNFHEMQNRGRGSRVEFWAFDLLYLDGRSLLRARYRDRRKLLEMLAAGSRLIVPDLLP 597 Query 598 GDGAQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRS 657 GDG +A S + GWEGVIAK+RDS YQPGRR +SW+KDKHWNTQEVVIGGW+AGEGGRS Sbjct 598 GDGREALEHSAERGWEGVIAKKRDSTYQPGRRSSSWIKDKHWNTQEVVIGGWKAGEGGRS 657 Query 658 SGVGSLLMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGI 717 SG+GSLLMGIP GGL FAGRVGTG ++R+LANLK+ LAPLHTDESPFD PLP +A+G+ Sbjct 658 SGIGSLLMGIPTAGGLHFAGRVGTGFTDRDLANLKKTLAPLHTDESPFDPPLPRSEARGV 717 Query 718 TYVKPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE 759 TYV+P LV EVRYSEWTP+ RLRQSSWRGLRPDK+ SEVVRE Sbjct 718 TYVRPELVGEVRYSEWTPDDRLRQSSWRGLRPDKEASEVVRE 759 >gi|240171922|ref|ZP_04750581.1| ATP-dependent DNA ligase [Mycobacterium kansasii ATCC 12478] Length=783 Score = 1233 bits (3189), Expect = 0.0, Method: Compositional matrix adjust. Identities = 608/771 (79%), Positives = 660/771 (86%), Gaps = 22/771 (2%) Query 8 RVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQPAFFEKQ 67 RVTLTNADKVLYPATGTTK D+FDYY +AEVM+ HIAGRPATRKRWPNGVDQP+FFEKQ Sbjct 16 RVTLTNADKVLYPATGTTKRDVFDYYTRIAEVMVPHIAGRPATRKRWPNGVDQPSFFEKQ 75 Query 68 LALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAEPGSGE-- 125 LA SAP WL RA+V HRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAE E Sbjct 76 LASSAPDWLPRASVVHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAEWTRSEAE 135 Query 126 -LNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLYTPLD 184 L PGPATRLVFDLDPG+GV MAQL EVA AVR+L++ IGL TFP+TSGSKGLHLY PLD Sbjct 136 QLKPGPATRLVFDLDPGDGVTMAQLVEVAHAVRELISGIGLSTFPLTSGSKGLHLYAPLD 195 Query 185 EPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAPYSLR 244 EPVSSRGATVLAKRVAQ+LE+ MP LVT+ MTKSLRAGKVF+DWSQN+GSKTTIAPYSLR Sbjct 196 EPVSSRGATVLAKRVAQQLEKTMPTLVTAIMTKSLRAGKVFLDWSQNNGSKTTIAPYSLR 255 Query 245 GRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRYRRMR 304 GR PTVAAPRTW EL DP LRQL YDEVL R+ARDGDLL LDAD P DRLT+YR MR Sbjct 256 GRDQPTVAAPRTWDELHDPGLRQLRYDEVLVRVARDGDLLAPLDADLPAGDRLTKYRSMR 315 Query 305 DASKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLECDGVLVSWAVPKNLPDNTSVN 364 DASKTPEP+P ++PV G GNTFVIQEHHARR HYDFRLE DGVLVSWAVPKNLP+ SVN Sbjct 316 DASKTPEPVPRSRPVVGQGNTFVIQEHHARRLHYDFRLERDGVLVSWAVPKNLPETASVN 375 Query 365 HLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDD-------------- 410 HLA+ TEDHPLEYATFEG IP GEYGAGKVIIWD+GTYD EKF D Sbjct 376 HLAVRTEDHPLEYATFEGTIPKGEYGAGKVIIWDAGTYDVEKFRDGAESAAEKGPQKGPQ 435 Query 411 --PHTGEVIVNLHGGRISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTV 468 P GEVIVNLHG RISGRYALI+TNGD+WLAHR+K +Q+ F+FD LAPML THG+V Sbjct 436 KGPRKGEVIVNLHGKRISGRYALIQTNGDQWLAHRMK---EQQAFDFDTLAPMLTTHGSV 492 Query 469 AGLKASQWAFEGKWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLD 528 LKA QWAFEGKWDGYRLLVEADHGAVRLRSRSGRDVT EYPQLR+LA DLADHHVVLD Sbjct 493 DRLKAGQWAFEGKWDGYRLLVEADHGAVRLRSRSGRDVTKEYPQLRSLAADLADHHVVLD 552 Query 529 GEAVVLDSSGVPSFSQMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANAT 588 GE V LD++GVPSF++MQNR R TR+EFWAFDLLYLDGR+LL +YQDRRKLLETL A Sbjct 553 GEVVALDAAGVPSFNEMQNRVRATRIEFWAFDLLYLDGRSLLRAKYQDRRKLLETLGAAG 612 Query 589 SLTVPELLPGDGAQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGG 648 LTVPELLPGDGA+A A SRK GWEGVIAKRRDS YQPGRR A+W+KDKHWNTQEVVIGG Sbjct 613 HLTVPELLPGDGAEAMAYSRKRGWEGVIAKRRDSGYQPGRRSAAWIKDKHWNTQEVVIGG 672 Query 649 WRAGEGGRSSGVGSLLMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVP 708 WRAGEGGRSSG+GSLLMGIPGP GL FAGRVGTG ++R L +LK LAPL TDE+PF Sbjct 673 WRAGEGGRSSGIGSLLMGIPGPSGLHFAGRVGTGFTQRNLDSLKRTLAPLRTDENPFGAS 732 Query 709 LPARDAKGITYVKPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE 759 LPAR+AKG+T+V+P LV EVRYSEWTP+ RLRQ+SWRGLRPDK PSEVVRE Sbjct 733 LPAREAKGVTFVEPTLVGEVRYSEWTPDNRLRQTSWRGLRPDKDPSEVVRE 783 >gi|296169692|ref|ZP_06851310.1| ATP-dependent DNA ligase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895689|gb|EFG75385.1| ATP-dependent DNA ligase [Mycobacterium parascrofulaceum ATCC BAA-614] Length=759 Score = 1231 bits (3184), Expect = 0.0, Method: Compositional matrix adjust. Identities = 601/762 (79%), Positives = 665/762 (88%), Gaps = 6/762 (0%) Query 1 MGSASEQRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQ 60 M + + RV LTNADKVLYPATGTTK D+FDYY VAEVM+ HIAGRPATRKRWPNGV+Q Sbjct 1 MSATAGPRVRLTNADKVLYPATGTTKRDVFDYYTRVAEVMIPHIAGRPATRKRWPNGVEQ 60 Query 61 PAFFEKQLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAE 120 +FFEKQLA SAP WL R +V HRSGTTTYPIIDS GLAWIAQQAALEVHVPQWRFVAE Sbjct 61 DSFFEKQLASSAPDWLPRGSVTHRSGTTTYPIIDSPDGLAWIAQQAALEVHVPQWRFVAE 120 Query 121 ---PGSGELNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGL 177 + EL PGPATRLVFDLDPGEGV MAQLAEVA AVR+L+ IGL FP+TSGSKGL Sbjct 121 WTRSKAEELKPGPATRLVFDLDPGEGVTMAQLAEVAHAVRELIDGIGLTLFPLTSGSKGL 180 Query 178 HLYTPLDEPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTT 237 HLY PL EPVSS+GATVLAKRVAQ+LE++MP LVT+TMT+SLRAGKVF+DWSQN+GSKTT Sbjct 181 HLYAPLAEPVSSKGATVLAKRVAQQLEKSMPMLVTATMTRSLRAGKVFLDWSQNNGSKTT 240 Query 238 IAPYSLRGRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRL 297 IAPYSLRGR HPTVAAPRTWAE+DDP LRQL YDEVL R+ARDGDLL LD+DA V DRL Sbjct 241 IAPYSLRGREHPTVAAPRTWAEIDDPGLRQLRYDEVLARVARDGDLLAGLDSDAAVPDRL 300 Query 298 TRYRRMRDASKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLECDGVLVSWAVPKNL 357 T+YR MRDASKTPEP+P KP TG GN+FVIQEHHARR HYDFRLE DGVLVSWAVPKNL Sbjct 301 TKYRGMRDASKTPEPVPRTKPTTGQGNSFVIQEHHARRLHYDFRLERDGVLVSWAVPKNL 360 Query 358 PDNTSVNHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVI 417 P+ TSVNHLA+HTEDHPLEYATFEG IP GEYGAGKV+IWDSGTY+ EKF+D GEVI Sbjct 361 PETTSVNHLAVHTEDHPLEYATFEGNIPKGEYGAGKVVIWDSGTYEAEKFNDSAENGEVI 420 Query 418 VNLHGGRISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQWA 477 VNLHG ++SGRYALI+TNGD+WLAHR+ K+QK F+FD LAPMLATHG+VA KA QWA Sbjct 421 VNLHGDKVSGRYALIQTNGDQWLAHRM---KEQKTFDFDGLAPMLATHGSVAARKAGQWA 477 Query 478 FEGKWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSS 537 FEGKWDGYRLLVE DHGA+R+RSR GR+VT EYP LR+LA LADHHVVLDGEAVVLD+S Sbjct 478 FEGKWDGYRLLVEIDHGALRVRSRRGREVTNEYPDLRSLAAGLADHHVVLDGEAVVLDAS 537 Query 538 GVPSFSQMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSLTVPELLP 597 GVPSF MQNRGR +RVEFWAFDLLYLDGR+LL RYQDRRKLLETLAN + L VPELLP Sbjct 538 GVPSFHAMQNRGRGSRVEFWAFDLLYLDGRSLLRARYQDRRKLLETLANGSDLIVPELLP 597 Query 598 GDGAQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRS 657 GDG +A A SR+HGWEGV+AK+RDS YQPGRR ASWVKDK+WNTQEVVIGGW+AGEGGRS Sbjct 598 GDGERALAHSREHGWEGVVAKKRDSTYQPGRRSASWVKDKNWNTQEVVIGGWKAGEGGRS 657 Query 658 SGVGSLLMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGI 717 SG+GSLLMGIP GGL FAGRVGTG +ER+LA+LK+ LAPLHTD+SPF LP +A+G+ Sbjct 658 SGIGSLLMGIPVDGGLHFAGRVGTGFTERDLAHLKKTLAPLHTDQSPFTPTLPRGEARGV 717 Query 718 TYVKPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE 759 TYV+P LV EVRYSEWTP+ RLRQSSWRGLRPDK+PSEVVRE Sbjct 718 TYVEPVLVGEVRYSEWTPDDRLRQSSWRGLRPDKEPSEVVRE 759 >gi|41406978|ref|NP_959814.1| ATP-dependent DNA ligase [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395329|gb|AAS03197.1| hypothetical protein MAP_0880 [Mycobacterium avium subsp. paratuberculosis K-10] Length=764 Score = 1224 bits (3168), Expect = 0.0, Method: Compositional matrix adjust. Identities = 600/756 (80%), Positives = 659/756 (88%), Gaps = 11/756 (1%) Query 8 RVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQPAFFEKQ 67 RV LTNADKVLYPATGTTK+D+FDYY +A+VM+ HIAGRP TRKRWPNGVDQ +FFEKQ Sbjct 16 RVKLTNADKVLYPATGTTKADVFDYYTRIADVMIPHIAGRPVTRKRWPNGVDQESFFEKQ 75 Query 68 LALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAE---PGSG 124 LA SAP WL RA+V HRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAE + Sbjct 76 LASSAPDWLPRASVTHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAEWTRSRAE 135 Query 125 ELNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLYTPLD 184 EL PGPATRLVFDLDPGEGV MAQLAEVARAVRDL+ IGL TFP+TSGSKGLHLYTPL Sbjct 136 ELKPGPATRLVFDLDPGEGVTMAQLAEVARAVRDLIDGIGLQTFPLTSGSKGLHLYTPLT 195 Query 185 EPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAPYSLR 244 EPVSS+GATVLAKRVAQ+LE+ MP LVTSTMTKSLRAGK+FVDWSQN+GSKTTIAPYSLR Sbjct 196 EPVSSKGATVLAKRVAQQLEKTMPKLVTSTMTKSLRAGKIFVDWSQNNGSKTTIAPYSLR 255 Query 245 GRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDAD-APVADRLTRYRRM 303 GR HPTVAAPRTW ELDDPALR L YDEVLTR+ARDGDLL LD + PV DRLT+YR M Sbjct 256 GRDHPTVAAPRTWDELDDPALRHLRYDEVLTRVARDGDLLAELDDNQTPVPDRLTKYRSM 315 Query 304 RDASKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLECDGVLVSWAVPKNLPDNTSV 363 RDASKTPEP+P AKP G GNTFVIQEHHARR HYDFRLE DGVLVSWAVPKNLPD +V Sbjct 316 RDASKTPEPVPDAKPAAGQGNTFVIQEHHARRLHYDFRLERDGVLVSWAVPKNLPDTPAV 375 Query 364 NHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNLHGG 423 NHLA+HTEDHPLEY FEG IP GEYGAG+V+IWDSGTYD EKF DD EVIVNLHG Sbjct 376 NHLAVHTEDHPLEYGGFEGVIPKGEYGAGRVVIWDSGTYDAEKFQDD----EVIVNLHGR 431 Query 424 RISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQWAFEGKWD 483 +ISGRYALI+T GD+WLAHR+K DQ VFEFD +APMLATHG+V+ LKASQWAFEGKWD Sbjct 432 KISGRYALIQTQGDQWLAHRMK---DQNVFEFDTIAPMLATHGSVSALKASQWAFEGKWD 488 Query 484 GYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVPSFS 543 GYRLLVEADHG +R+RSR GR+VT EY +LR+LA+ L +HH VLDGEAVVLD GVP+F Sbjct 489 GYRLLVEADHGTLRVRSRRGREVTGEYRELRSLAKALEEHHAVLDGEAVVLDKRGVPNFH 548 Query 544 QMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSLTVPELLPGDGAQA 603 +MQNRG+ RVEFWAFDLLYLDGR+LL RY+DRRKLLE LA+ +LTVPELLPGDG QA Sbjct 549 EMQNRGKSARVEFWAFDLLYLDGRSLLRARYRDRRKLLEMLASGGALTVPELLPGDGDQA 608 Query 604 FACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRSSGVGSL 663 S + GWEGVIAKRRDS YQPGRR +SW+KDKHWNTQEVVIGGW+AGEGGRSSG+GSL Sbjct 609 LRQSAERGWEGVIAKRRDSTYQPGRRSSSWIKDKHWNTQEVVIGGWKAGEGGRSSGIGSL 668 Query 664 LMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYVKPA 723 LMGIPGPGGL FAGRVGTG +ER+LANLK+ LAPL TD+SPFD PLP +AKG+T+V+P Sbjct 669 LMGIPGPGGLHFAGRVGTGFTERDLANLKKTLAPLRTDQSPFDAPLPRSEAKGVTFVEPV 728 Query 724 LVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE 759 LV EVRYSEWTP+ RLRQSSWRGLRPDK+ SEVVRE Sbjct 729 LVGEVRYSEWTPDDRLRQSSWRGLRPDKEASEVVRE 764 >gi|118467268|ref|YP_880311.1| ATP-dependent DNA ligase [Mycobacterium avium 104] gi|118168555|gb|ABK69452.1| DNA ligase [Mycobacterium avium 104] Length=766 Score = 1224 bits (3166), Expect = 0.0, Method: Compositional matrix adjust. Identities = 600/758 (80%), Positives = 658/758 (87%), Gaps = 13/758 (1%) Query 8 RVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQPAFFEKQ 67 RV LTNADKVLYPATGTTK+D+FDYY +A+VM+ HIAGRP TRKRWPNGVDQ +FFEKQ Sbjct 16 RVKLTNADKVLYPATGTTKADVFDYYTRIADVMIPHIAGRPVTRKRWPNGVDQESFFEKQ 75 Query 68 LALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAE---PGSG 124 LA SAP WL RA+V HRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAE + Sbjct 76 LASSAPDWLPRASVTHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAEWTRSRAE 135 Query 125 ELNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLYTPLD 184 EL PGPATRLVFDLDPGEGV MAQLAEVARAVRDL+ IGL TFP+TSGSKGLHLYTPL Sbjct 136 ELKPGPATRLVFDLDPGEGVTMAQLAEVARAVRDLIDGIGLQTFPLTSGSKGLHLYTPLT 195 Query 185 EPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAPYSLR 244 EPVSS+GATVLAKRVAQ+LE+ MP LVTSTMTKSLRAGK+FVDWSQN+GSKTTIAPYSLR Sbjct 196 EPVSSKGATVLAKRVAQQLEKTMPKLVTSTMTKSLRAGKIFVDWSQNNGSKTTIAPYSLR 255 Query 245 GRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDA---DAPVADRLTRYR 301 GR HPTVAAPRTW ELDDPALR L YDEVLTR+ARDGDLL LDA PV DRLT+YR Sbjct 256 GRDHPTVAAPRTWDELDDPALRHLRYDEVLTRVARDGDLLAELDASDNQTPVPDRLTKYR 315 Query 302 RMRDASKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLECDGVLVSWAVPKNLPDNT 361 MRDASKTPEP+P AKP G GNTFVIQEHHARR HYDFRLE DGVLVSWAVPKNLPD Sbjct 316 SMRDASKTPEPVPAAKPAAGRGNTFVIQEHHARRLHYDFRLERDGVLVSWAVPKNLPDTP 375 Query 362 SVNHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNLH 421 +VNHLA+HTEDHPLEY FEG IP GEYGAG+V+IWDSGTYD EKF DD EVIVNLH Sbjct 376 AVNHLAVHTEDHPLEYGGFEGVIPKGEYGAGRVVIWDSGTYDAEKFQDD----EVIVNLH 431 Query 422 GGRISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQWAFEGK 481 G +ISGRYALI+T GD+WLAHR+K DQ VF+FD +APMLATHG+V+ LKASQWAFEGK Sbjct 432 GRKISGRYALIQTEGDQWLAHRMK---DQNVFDFDTIAPMLATHGSVSALKASQWAFEGK 488 Query 482 WDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVPS 541 WDGYRLLVEADHG +R+RSR GR+VT EY +LR+LA+ L +HH VLDGEAVVLD GVP+ Sbjct 489 WDGYRLLVEADHGTLRVRSRRGREVTGEYRELRSLAKALEEHHAVLDGEAVVLDKRGVPN 548 Query 542 FSQMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSLTVPELLPGDGA 601 F +MQNRG+ RVEFWAFDLLYLDGR+LL RY+DRRKLLE LA+ LTVPELLPGDG Sbjct 549 FHEMQNRGKSARVEFWAFDLLYLDGRSLLRARYRDRRKLLEMLASGGDLTVPELLPGDGD 608 Query 602 QAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRSSGVG 661 QA S + GWEGVIAKRRDS YQPGRR +SW+KDKHWNTQEVVIGGW+AGEGGRSSG+G Sbjct 609 QALRQSAERGWEGVIAKRRDSTYQPGRRSSSWIKDKHWNTQEVVIGGWKAGEGGRSSGIG 668 Query 662 SLLMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYVK 721 SLLMGIPGPGGL FAGRVGTG +ER+LANLK+ LAPL TD+SPFD PLP +AKG+T+V+ Sbjct 669 SLLMGIPGPGGLHFAGRVGTGFTERDLANLKKTLAPLRTDQSPFDAPLPRSEAKGVTFVE 728 Query 722 PALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE 759 P LV EVRYSEWTP+ RLRQSSWRGLRPDK+ SEVVRE Sbjct 729 PVLVGEVRYSEWTPDDRLRQSSWRGLRPDKEASEVVRE 766 >gi|336461304|gb|EGO40176.1| DNA ligase D/DNA polymerase LigD [Mycobacterium avium subsp. paratuberculosis S397] Length=764 Score = 1222 bits (3161), Expect = 0.0, Method: Compositional matrix adjust. Identities = 598/756 (80%), Positives = 658/756 (88%), Gaps = 11/756 (1%) Query 8 RVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQPAFFEKQ 67 RV LTNADKVLYPATGTTK+D+FDYY +A+VM+ HIAGRP TRKRWPNGVDQ +FFEKQ Sbjct 16 RVKLTNADKVLYPATGTTKADVFDYYTRIADVMIPHIAGRPVTRKRWPNGVDQESFFEKQ 75 Query 68 LALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAE---PGSG 124 LA SAP WL RA+V HRSGTTTYPIIDS TGLAWIAQQAALEVHVPQWRFVAE + Sbjct 76 LASSAPDWLPRASVTHRSGTTTYPIIDSVTGLAWIAQQAALEVHVPQWRFVAEWTRSRAE 135 Query 125 ELNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLYTPLD 184 EL PGPATRLVFDLDPGEGV MAQLAEVARAVRDL+ IGL TFP+TSGSKGLHLYTPL Sbjct 136 ELKPGPATRLVFDLDPGEGVTMAQLAEVARAVRDLIDGIGLQTFPLTSGSKGLHLYTPLT 195 Query 185 EPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAPYSLR 244 EPVSS+GATVLAKRVAQ+LE+ MP LVTSTMTKSLRAGK+FVDWSQN+GSKTTIAPYSLR Sbjct 196 EPVSSKGATVLAKRVAQQLEKTMPKLVTSTMTKSLRAGKIFVDWSQNNGSKTTIAPYSLR 255 Query 245 GRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDAD-APVADRLTRYRRM 303 GR HPTVAAPRTW ELDDPALR L YDEVLTR+ARDGDLL LD + PV DRLT+YR M Sbjct 256 GRDHPTVAAPRTWDELDDPALRHLRYDEVLTRVARDGDLLAELDDNQTPVPDRLTKYRSM 315 Query 304 RDASKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLECDGVLVSWAVPKNLPDNTSV 363 RDASKTPEP+P AKP G GNTFVIQEHHARR HYDFRLE DGVLVSWAVPKNLPD +V Sbjct 316 RDASKTPEPVPDAKPAAGQGNTFVIQEHHARRLHYDFRLERDGVLVSWAVPKNLPDTPAV 375 Query 364 NHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNLHGG 423 NHLA+HTEDHPLEY FEG IP GEYGAG+V+IWDSGTYD EKF DD EVIVNLHG Sbjct 376 NHLAVHTEDHPLEYGGFEGVIPKGEYGAGRVVIWDSGTYDAEKFQDD----EVIVNLHGR 431 Query 424 RISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQWAFEGKWD 483 +ISGRYALI+T GD+WLAHR+K DQ VFEFD +APMLATHG+V+ LKASQWAFEGKWD Sbjct 432 KISGRYALIQTQGDQWLAHRMK---DQNVFEFDTIAPMLATHGSVSALKASQWAFEGKWD 488 Query 484 GYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVPSFS 543 GYRLLVEADHG +R+RSR GR+VT EY +LR+LA+ L +HH VLDGEAVVLD GVP+F Sbjct 489 GYRLLVEADHGTLRVRSRRGREVTGEYRELRSLAKALEEHHAVLDGEAVVLDKRGVPNFH 548 Query 544 QMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSLTVPELLPGDGAQA 603 +MQNRG+ RVEFWAFDLLYLDGR+LL RY+DRRKLLE LA+ +LTVPELLPGDG QA Sbjct 549 EMQNRGKSARVEFWAFDLLYLDGRSLLRARYRDRRKLLEMLASGGALTVPELLPGDGDQA 608 Query 604 FACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRSSGVGSL 663 S + GWEGVIAKRRDS YQPGRR +SW+KDKHWNTQEVVIGGW+AGEGGRSSG+GSL Sbjct 609 LRQSAERGWEGVIAKRRDSTYQPGRRSSSWIKDKHWNTQEVVIGGWKAGEGGRSSGIGSL 668 Query 664 LMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYVKPA 723 LMGIPGPGGL FAGRVGTG +ER+LANLK+ LAPL TD+SPFD P+P +AKG+T+V+P Sbjct 669 LMGIPGPGGLHFAGRVGTGFTERDLANLKKTLAPLRTDQSPFDAPVPRSEAKGVTFVEPV 728 Query 724 LVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE 759 LV EVRYSEWTP+ RLRQSSWRGLRPDK+ SEVVRE Sbjct 729 LVGEVRYSEWTPDDRLRQSSWRGLRPDKEASEVVRE 764 >gi|254773938|ref|ZP_05215454.1| ATP-dependent DNA ligase [Mycobacterium avium subsp. avium ATCC 25291] Length=750 Score = 1221 bits (3158), Expect = 0.0, Method: Compositional matrix adjust. Identities = 598/757 (79%), Positives = 657/757 (87%), Gaps = 13/757 (1%) Query 9 VTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQPAFFEKQL 68 + LTNADKVLYPATGTTK+D+FDYY +A+VM+ HIAGRP TRKRWPNGVDQ +FFEKQL Sbjct 1 MKLTNADKVLYPATGTTKADVFDYYTRIADVMIPHIAGRPVTRKRWPNGVDQESFFEKQL 60 Query 69 ALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAE---PGSGE 125 A SAP WL RA+V HRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAE + E Sbjct 61 ASSAPDWLPRASVTHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAEWTRSRAEE 120 Query 126 LNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLYTPLDE 185 L PGPATRLVFDLDPGEGV MAQLAEVARAVRDL+ IGL TFP+TSGSKGLHLYTPL E Sbjct 121 LKPGPATRLVFDLDPGEGVTMAQLAEVARAVRDLIDGIGLQTFPLTSGSKGLHLYTPLTE 180 Query 186 PVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAPYSLRG 245 PVSS+GATVLAKRVAQ+LE+ MP LVTSTMTKSLRAGK+FVDWSQN+GSKTTIAPYSLRG Sbjct 181 PVSSKGATVLAKRVAQQLEKTMPKLVTSTMTKSLRAGKIFVDWSQNNGSKTTIAPYSLRG 240 Query 246 RTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDA---DAPVADRLTRYRR 302 R HPTVAAPRTW ELDDPALR L YDEVLTR+ARDGDLL LDA PV DRLT+YR Sbjct 241 RDHPTVAAPRTWDELDDPALRHLRYDEVLTRVARDGDLLAELDASDNQTPVPDRLTKYRS 300 Query 303 MRDASKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLECDGVLVSWAVPKNLPDNTS 362 MRDASKTPEP+P AKP G GNTFVIQEHHARR HYDFRLE DGVLVSWAVPKNLPD + Sbjct 301 MRDASKTPEPVPAAKPAAGRGNTFVIQEHHARRLHYDFRLERDGVLVSWAVPKNLPDTPA 360 Query 363 VNHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNLHG 422 VNHLA+HTEDHPLEY FEG IP GEYGAG+V+IWDSGTYD EKF DD EVIVNLHG Sbjct 361 VNHLAVHTEDHPLEYGGFEGVIPKGEYGAGRVVIWDSGTYDAEKFQDD----EVIVNLHG 416 Query 423 GRISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQWAFEGKW 482 +ISGRYALI+T GD+WLAHR+K DQ VF+FD +APMLATHG+V+ LKASQWAFEGKW Sbjct 417 RKISGRYALIQTEGDQWLAHRMK---DQNVFDFDTIAPMLATHGSVSALKASQWAFEGKW 473 Query 483 DGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVPSF 542 DGYRLLVEADHG +R+RSR GR+VT EY +LR+LA+ L +HH VLDGEAVVLD GVP+F Sbjct 474 DGYRLLVEADHGTLRVRSRRGREVTGEYRELRSLAKALEEHHAVLDGEAVVLDKRGVPNF 533 Query 543 SQMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSLTVPELLPGDGAQ 602 +MQNRG+ RVEFWAFDLLYLDGR+LL RY+DRRKLLE LA+ LTVPELLPGDG Q Sbjct 534 HEMQNRGKSARVEFWAFDLLYLDGRSLLRARYRDRRKLLEMLASGGDLTVPELLPGDGDQ 593 Query 603 AFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRSSGVGS 662 A S + GWEGVIAKRRDS YQPGRR +SW+KDKHWNTQEVVIGGW+AGEGGRSSG+GS Sbjct 594 ALRQSAERGWEGVIAKRRDSTYQPGRRSSSWIKDKHWNTQEVVIGGWKAGEGGRSSGIGS 653 Query 663 LLMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYVKP 722 LLMGIPGPGGL FAGRVGTG +ER+LANLK+ LAPL TD+SPFD PLP +AKG+T+V+P Sbjct 654 LLMGIPGPGGLHFAGRVGTGFTERDLANLKKTLAPLRTDQSPFDAPLPRSEAKGVTFVEP 713 Query 723 ALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE 759 LV EVRYSEWTP+ RLRQSSWRGLRPDK+ SEVVRE Sbjct 714 VLVGEVRYSEWTPDDRLRQSSWRGLRPDKEASEVVRE 750 >gi|342860542|ref|ZP_08717193.1| ATP-dependent DNA ligase [Mycobacterium colombiense CECT 3035] gi|342132197|gb|EGT85438.1| ATP-dependent DNA ligase [Mycobacterium colombiense CECT 3035] Length=751 Score = 1206 bits (3119), Expect = 0.0, Method: Compositional matrix adjust. Identities = 594/755 (79%), Positives = 658/755 (88%), Gaps = 10/755 (1%) Query 8 RVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQPAFFEKQ 67 RV LTNADKVLYPA+GTTKSD+FDYY +AEVM+ HIAGR ATRKRWPNGV + FFEKQ Sbjct 4 RVKLTNADKVLYPASGTTKSDVFDYYTRIAEVMIPHIAGRAATRKRWPNGVAEEPFFEKQ 63 Query 68 LALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAE---PGSG 124 LA SAP WL RA+V HRSGTTTYPIIDS GLAWIAQQAALEVHVPQWRFVAE + Sbjct 64 LASSAPDWLPRASVTHRSGTTTYPIIDSVDGLAWIAQQAALEVHVPQWRFVAEWTRSRAE 123 Query 125 ELNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLYTPLD 184 EL PGPATRLVFDLDPGEGV MAQLAEVARAVR+L+ IGL T+P+TSGSKGLHLYTPL Sbjct 124 ELKPGPATRLVFDLDPGEGVTMAQLAEVARAVRELITGIGLTTYPLTSGSKGLHLYTPLQ 183 Query 185 EPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAPYSLR 244 EPVSS+GATVLAKRVAQ+LE+ MP LVTSTMTKSLRAGK+F+DWSQN+G+KTTIAPYSLR Sbjct 184 EPVSSKGATVLAKRVAQQLEKTMPTLVTSTMTKSLRAGKIFLDWSQNNGAKTTIAPYSLR 243 Query 245 GRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRYRRMR 304 GR PTVAAPRTW ELDDP+LRQL YDEVL R+ARDGDLL LD DAP+ DRL++YR MR Sbjct 244 GREQPTVAAPRTWEELDDPSLRQLRYDEVLDRVARDGDLLAPLDEDAPIPDRLSKYRSMR 303 Query 305 DASKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLECDGVLVSWAVPKNLPDNTSVN 364 DASKTPEP+P AKP G GN+FVIQEHHARR HYDFRLE DGVLVSWAVPKNLP+ TSVN Sbjct 304 DASKTPEPVPAAKPAMGQGNSFVIQEHHARRLHYDFRLERDGVLVSWAVPKNLPETTSVN 363 Query 365 HLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNLHGGR 424 HLA+HTEDHPLEY FEG IP GEYGAGKVIIWD+GTYD EKFHDD EVIVNLHG R Sbjct 364 HLAVHTEDHPLEYGGFEGIIPQGEYGAGKVIIWDAGTYDAEKFHDD----EVIVNLHGSR 419 Query 425 ISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQWAFEGKWDG 484 ISGRYALI+TNGD+WLAHR+K DQKVF+FD +APMLATHG+V LKA QWAFEGKWDG Sbjct 420 ISGRYALIQTNGDQWLAHRMK---DQKVFDFDTIAPMLATHGSVTALKARQWAFEGKWDG 476 Query 485 YRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVPSFSQ 544 YRLL+EADHG++R+RSR GR+VT EYP+LR+LAEDLA+HHV+LDGEAVVLDSSGVP+F + Sbjct 477 YRLLIEADHGSIRIRSRRGREVTGEYPELRSLAEDLAEHHVILDGEAVVLDSSGVPNFHE 536 Query 545 MQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSLTVPELLPGDGAQAF 604 MQNRGR +RVEFWAFD+LYLDGR+LL RY DRRK+LE L + L VPELLPGDGAQA Sbjct 537 MQNRGRGSRVEFWAFDVLYLDGRSLLRARYSDRRKVLEMLGAGSDLIVPELLPGDGAQAL 596 Query 605 ACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRSSGVGSLL 664 S K GWEGVIAKRRDS YQPGRR +SW+KDKHWNTQEVVIGGW+AGEGGRSSG+GSLL Sbjct 597 EQSGKRGWEGVIAKRRDSTYQPGRRSSSWIKDKHWNTQEVVIGGWKAGEGGRSSGIGSLL 656 Query 665 MGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYVKPAL 724 MGIP GL FAGRVGTG +ER+L+NLK+ LAPLHTD SPF PLP +A+G+TYV+P L Sbjct 657 MGIPTADGLHFAGRVGTGFTERDLSNLKKTLAPLHTDASPFHPPLPRSEARGVTYVEPVL 716 Query 725 VAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE 759 V EVRYSEWTP+ RLRQSSWRGLRPDK+ SEVVRE Sbjct 717 VGEVRYSEWTPDNRLRQSSWRGLRPDKEASEVVRE 751 >gi|289568908|ref|ZP_06449135.1| ATP dependent DNA ligase [Mycobacterium tuberculosis T17] gi|289542662|gb|EFD46310.1| ATP dependent DNA ligase [Mycobacterium tuberculosis T17] Length=565 Score = 1144 bits (2960), Expect = 0.0, Method: Compositional matrix adjust. Identities = 560/565 (99%), Positives = 561/565 (99%), Gaps = 0/565 (0%) Query 195 LAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAPYSLRGRTHPTVAAP 254 +AKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAPYSLRGRTHPTVAAP Sbjct 1 MAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAPYSLRGRTHPTVAAP 60 Query 255 RTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRYRRMRDASKTPEPIP 314 RTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRYRRMRD SKTPEPIP Sbjct 61 RTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRYRRMRDTSKTPEPIP 120 Query 315 TAKPVTGDGNTFVIQEHHARRPHYDFRLECDGVLVSWAVPKNLPDNTSVNHLAIHTEDHP 374 TAKPVTGDGNTFVIQEHHARRPHYDFRLE DGVLVSWAVPKNLPDNTSVNHLAIHTEDHP Sbjct 121 TAKPVTGDGNTFVIQEHHARRPHYDFRLERDGVLVSWAVPKNLPDNTSVNHLAIHTEDHP 180 Query 375 LEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNLHGGRISGRYALIRT 434 LEYATFEGA PSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNLHGGRISGRYALIRT Sbjct 181 LEYATFEGANPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNLHGGRISGRYALIRT 240 Query 435 NGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQWAFEGKWDGYRLLVEADHG 494 NGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQWAFEGKWDGYRLLVEADHG Sbjct 241 NGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQWAFEGKWDGYRLLVEADHG 300 Query 495 AVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVPSFSQMQNRGRDTRV 554 AVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVPSFSQMQNRGRDTRV Sbjct 301 AVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVPSFSQMQNRGRDTRV 360 Query 555 EFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSLTVPELLPGDGAQAFACSRKHGWEG 614 EFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSLTVPELLPGDGAQAFACSRKHGWEG Sbjct 361 EFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSLTVPELLPGDGAQAFACSRKHGWEG 420 Query 615 VIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRSSGVGSLLMGIPGPGGLQ 674 VIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGG SSGVGSLLMGIPGPGGLQ Sbjct 421 VIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGHSSGVGSLLMGIPGPGGLQ 480 Query 675 FAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYVKPALVAEVRYSEWT 734 FAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYVKPALVAEVRYSEWT Sbjct 481 FAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYVKPALVAEVRYSEWT 540 Query 735 PEGRLRQSSWRGLRPDKKPSEVVRE 759 PEGRLRQSSWRGLRPDKKPSEVVRE Sbjct 541 PEGRLRQSSWRGLRPDKKPSEVVRE 565 >gi|120405865|ref|YP_955694.1| ATP-dependent DNA ligase [Mycobacterium vanbaalenii PYR-1] gi|119958683|gb|ABM15688.1| ATP-dependent DNA ligase LigD ligase module / ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase module [Mycobacterium vanbaalenii PYR-1] Length=763 Score = 1095 bits (2833), Expect = 0.0, Method: Compositional matrix adjust. Identities = 543/767 (71%), Positives = 616/767 (81%), Gaps = 23/767 (2%) Query 7 QRVTLTNADKVLYPATG-----TTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQP 61 +RV LTN DKVLYPATG TK+++FDYY VA ML HIAGR TRKRWPNGV + Sbjct 6 ERVKLTNPDKVLYPATGDRRRAVTKAEVFDYYVNVAAAMLPHIAGRAVTRKRWPNGVTEE 65 Query 62 AFFEKQLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAEP 121 +FFEKQLA SAP WL R T+ H+SGTTTYP+ID+ GLAWIAQQAALEVHVPQWRFV Sbjct 66 SFFEKQLASSAPDWLGRGTIVHKSGTTTYPVIDTVEGLAWIAQQAALEVHVPQWRFV--- 122 Query 122 GSGELNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLYT 181 + + GPATR+VFDLDPGEGV QL EVA VRDLLADIGL TFP+TSGSKGLHLY Sbjct 123 ---DGSVGPATRIVFDLDPGEGVTFRQLCEVANEVRDLLADIGLRTFPLTSGSKGLHLYV 179 Query 182 PLDEPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAPY 241 PLDEP+SSRGA+VLAKRVAQ+LEQAMP VT+TMTKSLR GKVFVDWSQN+ +KTTIAPY Sbjct 180 PLDEPISSRGASVLAKRVAQQLEQAMPMQVTATMTKSLRTGKVFVDWSQNNANKTTIAPY 239 Query 242 SLRGRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRYR 301 SLRGR HPTVAAPRTW E+ DP LRQL++DEVL R+ RDGDLL LD PV DRLTRYR Sbjct 240 SLRGREHPTVAAPRTWEEISDPDLRQLTFDEVLDRLDRDGDLLAGLDPPVPVPDRLTRYR 299 Query 302 RMRDASKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLECDGVLVSWAVPKNLPDNT 361 MRD +KTPEPIP P TG+ + FVIQEHHARR HYDFRLE DGVLVSWAVPKNLPD Sbjct 300 SMRDTAKTPEPIPGDAPTTGNNDKFVIQEHHARRLHYDFRLERDGVLVSWAVPKNLPDTP 359 Query 362 SVNHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDP-----HTGEV 416 SVNHLA+HTEDHP+EY TF G IP GEYG G+V IWD+GTY+TEKF D+P GEV Sbjct 360 SVNHLAVHTEDHPMEYLTFAGEIPRGEYGGGEVYIWDTGTYETEKFRDNPPDGPDRGGEV 419 Query 417 IVNLHGGRISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQW 476 IV LHG +I GRYALI+T+G WLAHR+K+Q+ +LAPML THG+V L QW Sbjct 420 IVTLHGEKIDGRYALIQTDGKNWLAHRMKDQQRPTAA---DLAPMLTTHGSVQRLTKGQW 476 Query 477 AFEGKWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDS 536 AFEGKWDGYRLLVEADHG + LRSR+GRDVTAEYPQL+ALA DLADHHV+LDGEAV LD Sbjct 477 AFEGKWDGYRLLVEADHGRLALRSRNGRDVTAEYPQLQALAADLADHHVILDGEAVALDE 536 Query 537 SGVPSFSQMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSLTVPELL 596 SGVPSF +MQNR R TRVEFWAFD+L+LDGR+LL +Y DRR++LE LA+ L VP L+ Sbjct 537 SGVPSFREMQNRARSTRVEFWAFDILFLDGRSLLRAKYTDRRRVLEALADGGGLIVPPLI 596 Query 597 PGD-GAQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGG 655 D GA+A +RK GWEGV+AK+RDS YQPGRR +SW+KDK WNTQEVVIGGWR GEGG Sbjct 597 GADTGAEALETARKRGWEGVVAKKRDSTYQPGRRSSSWIKDKLWNTQEVVIGGWRQGEGG 656 Query 656 RSSGVGSLLMGIPG---PGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPAR 712 R+SG+G+L++GIP GGLQF GRVGTG +E+ELA+LKE LAPLHTDESPF LP + Sbjct 657 RTSGIGALMLGIPAGGVAGGLQFVGRVGTGFTEKELASLKETLAPLHTDESPFATELPKQ 716 Query 713 DAKGITYVKPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE 759 DAKG+T+V+P LV EVRYSE T + RLRQ SWRGLR DK P EVV E Sbjct 717 DAKGVTFVRPELVGEVRYSERTSDNRLRQPSWRGLRTDKTPDEVVWE 763 >gi|118473774|ref|YP_889805.1| ATP-dependent DNA ligase [Mycobacterium smegmatis str. MC2 155] gi|118175061|gb|ABK75957.1| DNA ligase [Mycobacterium smegmatis str. MC2 155] Length=755 Score = 1087 bits (2811), Expect = 0.0, Method: Compositional matrix adjust. Identities = 525/761 (69%), Positives = 621/761 (82%), Gaps = 18/761 (2%) Query 7 QRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQPAFFEK 66 +RV LTN DKVLYPATGTTK+++FDYY +A+VM+ HIAGRP TRKRWPNGV + AFFEK Sbjct 5 ERVRLTNPDKVLYPATGTTKAEVFDYYLSIAQVMVPHIAGRPVTRKRWPNGVAEEAFFEK 64 Query 67 QLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAEPGSGEL 126 QLA SAP WL R ++ H+SGTTTYPII++ GLAW+AQQA+LEVHVPQWRF E G Sbjct 65 QLASSAPSWLERGSITHKSGTTTYPIINTREGLAWVAQQASLEVHVPQWRF--EDG---- 118 Query 127 NPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLYTPLDEP 186 + GPATR+VFDLDPGEGV M QL E+A VR L+ D+ L T+P+TSGSKGLHLY PL EP Sbjct 119 DQGPATRIVFDLDPGEGVTMTQLCEIAHEVRALMTDLDLETYPLTSGSKGLHLYVPLAEP 178 Query 187 VSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAPYSLRGR 246 +SSRGA+VLA+RVAQ+LEQAMP LVT+TMTKSLRAGKVF+DWSQN+ +KTTIAPYSLRGR Sbjct 179 ISSRGASVLARRVAQQLEQAMPKLVTATMTKSLRAGKVFLDWSQNNAAKTTIAPYSLRGR 238 Query 247 THPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRYRRMRDA 306 HPTVAAPRTW E+ DP LR L +DEVL R+ GDLL LDADAP+AD+LT YR MRDA Sbjct 239 DHPTVAAPRTWDEIADPELRHLRFDEVLDRLDEYGDLLAPLDADAPIADKLTTYRSMRDA 298 Query 307 SKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLECDGVLVSWAVPKNLPDNTSVNHL 366 SKTPEP+P P TG+ + FVIQEHHARR HYD RLE DGVLVS+AVPKNLP+ T+ N L Sbjct 299 SKTPEPVPKEIPKTGNNDKFVIQEHHARRLHYDLRLERDGVLVSFAVPKNLPETTAENRL 358 Query 367 AIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFH--------DDPHTGEVIV 418 A+HTEDHP+EY F G+IP GEYGAG ++IWDSG+Y+TEKF DD H GE+IV Sbjct 359 AVHTEDHPIEYLAFHGSIPKGEYGAGDMVIWDSGSYETEKFRVPEELDNPDDSH-GEIIV 417 Query 419 NLHGGRISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQWAF 478 LHG ++ GRYALI+T G WLAHR+K+QK+ + +F APMLAT G+VA KA QWAF Sbjct 418 TLHGEKVDGRYALIQTKGKNWLAHRMKDQKNARPEDF---APMLATEGSVAKYKAKQWAF 474 Query 479 EGKWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSG 538 EGKWDGYR++++ADHG +++RSR+GR+VT EYPQ +ALA DLA+HHVVLDGEAV LD SG Sbjct 475 EGKWDGYRVIIDADHGQLQIRSRTGREVTGEYPQFKALAADLAEHHVVLDGEAVALDESG 534 Query 539 VPSFSQMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSLTVPELLPG 598 VPSF QMQNR R TRVEFWAFD+L+LDGR+LL +Y DRRK+LE LA+ L VP+ LPG Sbjct 535 VPSFGQMQNRARSTRVEFWAFDILWLDGRSLLRAKYSDRRKILEALADGGGLIVPDQLPG 594 Query 599 DGAQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRSS 658 DG +A RK +EGV+AK+ DS YQPGRR +SW+KDK WNTQEVVIGGWR GEGGRSS Sbjct 595 DGPEAMEHVRKKRFEGVVAKKWDSTYQPGRRSSSWIKDKIWNTQEVVIGGWRQGEGGRSS 654 Query 659 GVGSLLMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGIT 718 G+G+L++GIPGP GLQF GRVGTG +E+EL+ LK+ML PLHTDESPF+ PLP DA+G+T Sbjct 655 GIGALVLGIPGPEGLQFVGRVGTGFTEKELSKLKDMLKPLHTDESPFNAPLPKVDARGVT 714 Query 719 YVKPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE 759 +V+P LV EVRYSE T +GRLRQ SWRGLRPDK P EVV E Sbjct 715 FVRPELVGEVRYSERTSDGRLRQPSWRGLRPDKTPDEVVWE 755 >gi|108801316|ref|YP_641513.1| ATP-dependent DNA ligase [Mycobacterium sp. MCS] gi|119870467|ref|YP_940419.1| ATP-dependent DNA ligase [Mycobacterium sp. KMS] gi|108771735|gb|ABG10457.1| ATP-dependent DNA ligase LigD ligase module / ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase module [Mycobacterium sp. MCS] gi|119696556|gb|ABL93629.1| ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD ligase module [Mycobacterium sp. KMS] Length=758 Score = 1067 bits (2759), Expect = 0.0, Method: Compositional matrix adjust. Identities = 530/757 (71%), Positives = 606/757 (81%), Gaps = 10/757 (1%) Query 8 RVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQPAFFEKQ 67 RV LTN DKVLYPATGTTK+++F+YY VAE M+ HIAGR TRKRWPNGV + FFEKQ Sbjct 7 RVRLTNPDKVLYPATGTTKAEVFEYYVDVAEAMVPHIAGRAVTRKRWPNGVGELEFFEKQ 66 Query 68 LALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAEPGSGELN 127 LA SAP WL+R T+ H+SGTTTYPIID+ GLAWIAQQAALEVHVPQWRFV G+L Sbjct 67 LASSAPDWLARGTIVHKSGTTTYPIIDTREGLAWIAQQAALEVHVPQWRFVGS--GGDLT 124 Query 128 PGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLYTPLDEPV 187 PGPATR+VFDLDPGEGV QL EVA VRDL+ DIGL +P+TSGSKGLHLY PL EP+ Sbjct 125 PGPATRIVFDLDPGEGVTFRQLCEVAHEVRDLITDIGLTAYPLTSGSKGLHLYVPLKEPI 184 Query 188 SSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAPYSLRGRT 247 SS+GA+VLAKRVAQ+LE+AMP VT+TMTKSLR GKVF+DWSQN+G+KTTIAPYSLRGR Sbjct 185 SSQGASVLAKRVAQQLEKAMPKQVTATMTKSLREGKVFLDWSQNNGNKTTIAPYSLRGRE 244 Query 248 HPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRYRRMRDAS 307 HPTVAAPRTW E++DP LR L +DEVL RI GDLL LD PV DRLT+YR MRD S Sbjct 245 HPTVAAPRTWEEIEDPDLRHLRFDEVLERIEEFGDLLADLDEYVPVEDRLTKYRSMRDPS 304 Query 308 KTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLECDGVLVSWAVPKNLPDNTSVNHLA 367 +TPEP+P P G+ + FVIQEHHARR HYD RLE DGVLVSWAVPKNLPD S NHLA Sbjct 305 RTPEPVPPLPPKAGNNDRFVIQEHHARRLHYDLRLERDGVLVSWAVPKNLPDRPSENHLA 364 Query 368 IHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDP-----HTGEVIVNLHG 422 +HTEDHP+EY TF G IP GEYG G +I+WD+GTY+TEKF+D GEVI+ LHG Sbjct 365 VHTEDHPMEYLTFHGTIPKGEYGGGDMIVWDTGTYETEKFNDHAPDGPAKGGEVIITLHG 424 Query 423 GRISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQWAFEGKW 482 RI GRYALI+T+G WLAHR+K+Q + F++ APMLATHG+V A QWAFEGKW Sbjct 425 NRIDGRYALIQTDGKNWLAHRMKDQGNPT---FEDFAPMLATHGSVEKFTAKQWAFEGKW 481 Query 483 DGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVPSF 542 DGYRLLV+ADHG + L+SRSGRDVTAEYPQLRALA DLADHHVVLDGE V LD GVPSF Sbjct 482 DGYRLLVDADHGKLCLKSRSGRDVTAEYPQLRALAADLADHHVVLDGEVVALDDKGVPSF 541 Query 543 SQMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSLTVPELLPGDGAQ 602 MQNR R TRVEFWAFD+L LDGR LL +Y+DRRKLLETLA+ L V LL GDG + Sbjct 542 GHMQNRARSTRVEFWAFDILRLDGRWLLKAKYRDRRKLLETLASGGGLIVQPLLDGDGLE 601 Query 603 AFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRSSGVGS 662 A +RK WEGV+AK+ DS YQPGRR ++W+KDK WNTQEVVIGGWR G GGRSSG+G+ Sbjct 602 ALEDARKRRWEGVVAKKWDSTYQPGRRSSAWIKDKLWNTQEVVIGGWREGNGGRSSGIGA 661 Query 663 LLMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYVKP 722 L++GIPGP GLQF GRVGTG +E+EL +LK+ LAPLHT ESPF LP +DAKG+T+V+P Sbjct 662 LVLGIPGPDGLQFVGRVGTGFTEKELGSLKKTLAPLHTYESPFATRLPTQDAKGVTFVRP 721 Query 723 ALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE 759 LV EVRYSE T +GRLRQ SWRGLRPDK P +VV E Sbjct 722 ELVGEVRYSERTGDGRLRQPSWRGLRPDKTPDDVVWE 758 >gi|126437297|ref|YP_001072988.1| ATP-dependent DNA ligase [Mycobacterium sp. JLS] gi|126237097|gb|ABO00498.1| ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD ligase module [Mycobacterium sp. JLS] Length=758 Score = 1063 bits (2750), Expect = 0.0, Method: Compositional matrix adjust. Identities = 529/757 (70%), Positives = 605/757 (80%), Gaps = 10/757 (1%) Query 8 RVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQPAFFEKQ 67 RV LTN DKVLYPATGTTK+++F+YY VAE M+ HIAGR TRKRWPNGV + FFEKQ Sbjct 7 RVRLTNPDKVLYPATGTTKAEVFEYYVDVAEAMVPHIAGRAVTRKRWPNGVGELEFFEKQ 66 Query 68 LALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAEPGSGELN 127 LA SAP WL+R T+ H+SGTTTYPIID+ GLAWIAQQAALEVHVPQWRFV G+L Sbjct 67 LASSAPDWLARGTIVHKSGTTTYPIIDTREGLAWIAQQAALEVHVPQWRFVGS--GGDLT 124 Query 128 PGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLYTPLDEPV 187 PGPATR+VFDLDPGEGV QL EVA VRDL+ IGL +P+TSGSKGLHLY PL EP+ Sbjct 125 PGPATRIVFDLDPGEGVTFRQLCEVAHEVRDLITGIGLTAYPLTSGSKGLHLYVPLQEPI 184 Query 188 SSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAPYSLRGRT 247 SS+GA+VLAKRVAQ+LE+AMP VT+TMTKSLR GKVF+DWSQN+G+KTTIAPYSLRGR Sbjct 185 SSQGASVLAKRVAQQLEKAMPKQVTATMTKSLREGKVFLDWSQNNGNKTTIAPYSLRGRE 244 Query 248 HPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRYRRMRDAS 307 HPTVAAPRTW E++DP LR L +DEVL RI GDLL LD PV DRLT+YR MRD S Sbjct 245 HPTVAAPRTWEEIEDPDLRHLRFDEVLERIEEFGDLLADLDEYVPVEDRLTKYRSMRDPS 304 Query 308 KTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLECDGVLVSWAVPKNLPDNTSVNHLA 367 +TPEP+P P G+ + FVIQEHHARR HYD RLE DGVLVSWAVPKNLPD S NHLA Sbjct 305 RTPEPVPPRPPKAGNNDRFVIQEHHARRLHYDLRLERDGVLVSWAVPKNLPDRPSENHLA 364 Query 368 IHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDP-----HTGEVIVNLHG 422 +HTEDHP+EY TF G IP GEYG G +I+WD+GTY+TEKF+D GEVI+ LHG Sbjct 365 VHTEDHPMEYLTFHGTIPKGEYGGGDMIVWDTGTYETEKFNDHAPDGPAKGGEVIITLHG 424 Query 423 GRISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQWAFEGKW 482 RI GRYALI+T+G WLAHR+K DQ F++ APMLATHG+V L A QWAFEGKW Sbjct 425 NRIDGRYALIQTDGKNWLAHRMK---DQGTPTFEDFAPMLATHGSVEKLTAKQWAFEGKW 481 Query 483 DGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVPSF 542 DGYRLLV+ADHG + L+SRSGRDVT+EYPQLRALA DLADHHVVLDGE V LD GVPSF Sbjct 482 DGYRLLVDADHGKLCLKSRSGRDVTSEYPQLRALAADLADHHVVLDGEVVALDDKGVPSF 541 Query 543 SQMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSLTVPELLPGDGAQ 602 MQNR R TRVEFWAFD+L LDGR LL +Y+DRRKLLETLA+ L V LL GDG + Sbjct 542 GHMQNRARSTRVEFWAFDILRLDGRWLLKAKYRDRRKLLETLASGGGLIVQPLLDGDGLE 601 Query 603 AFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRSSGVGS 662 A +RK WEGV+AK+ DS YQPGRR ++W+KDK WNTQEVVIGGWR G GGRSSG+G+ Sbjct 602 ALEDARKRRWEGVVAKKWDSTYQPGRRSSAWIKDKLWNTQEVVIGGWREGNGGRSSGIGA 661 Query 663 LLMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYVKP 722 L++GIPGP GLQF GRVGTG +E++L +LK+ LAPLHTDESPF LP +DA G+T+V+P Sbjct 662 LVLGIPGPDGLQFVGRVGTGFTEKQLGSLKKTLAPLHTDESPFATRLPTQDATGVTFVRP 721 Query 723 ALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE 759 LV EVRYSE T +GRLRQ SWRGLRPDK P +VV E Sbjct 722 ELVGEVRYSERTGDGRLRQPSWRGLRPDKTPDDVVWE 758 >gi|145222418|ref|YP_001133096.1| ATP-dependent DNA ligase [Mycobacterium gilvum PYR-GCK] gi|145214904|gb|ABP44308.1| ATP-dependent DNA ligase LigD ligase module / ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase module [Mycobacterium gilvum PYR-GCK] Length=766 Score = 1049 bits (2712), Expect = 0.0, Method: Compositional matrix adjust. Identities = 519/759 (69%), Positives = 603/759 (80%), Gaps = 13/759 (1%) Query 8 RVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQPAFFEKQ 67 RV LTN DKVLYPA+GTTK+ +F+YY VAE ML HIAGR TRKRWPNGV++ +FFEKQ Sbjct 7 RVKLTNPDKVLYPASGTTKAQVFEYYVNVAEGMLPHIAGRAVTRKRWPNGVEESSFFEKQ 66 Query 68 LALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFV--AEPGS-- 123 LA SAP WL R T+AH+SGTTTYP+ID+ GLAWIAQQAALEVHVPQWRF + G+ Sbjct 67 LASSAPDWLDRGTIAHKSGTTTYPVIDTVEGLAWIAQQAALEVHVPQWRFTRGGQSGAAD 126 Query 124 -GELNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLYTP 182 G+ PGPATR+VFDLDPGEGV QL EVA VR+L+ DIGL TFP+TSGSKGLHLY P Sbjct 127 GGDGKPGPATRIVFDLDPGEGVTFRQLCEVAHEVRELITDIGLTTFPLTSGSKGLHLYVP 186 Query 183 LDEPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAPYS 242 L++P+SSRGA+VLAKRVAQ+LEQ+MP VT+TMTKSLR GKVF+DWSQN+G+KTTIAPYS Sbjct 187 LEDPISSRGASVLAKRVAQQLEQSMPKRVTATMTKSLRDGKVFLDWSQNNGNKTTIAPYS 246 Query 243 LRGRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRYRR 302 LRGR PTVAAPRTW E++DP LR L++DEVL R+ RDGDLL LD P D+LTRYR Sbjct 247 LRGRERPTVAAPRTWDEIEDPDLRHLTFDEVLDRLERDGDLLADLDPPLPATDKLTRYRS 306 Query 303 MRDASKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLECDGVLVSWAVPKNLPDNTS 362 MRD +KTPEP+P P TG + FVIQEHHARR HYDFRLE DGVLVSWAVPKNLPD S Sbjct 307 MRDRTKTPEPVPAEPPETGANDKFVIQEHHARRLHYDFRLERDGVLVSWAVPKNLPDTPS 366 Query 363 VNHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDP-----HTGEVI 417 VNHLA+HTEDHP++Y F G IP GEYG G+V IWD+GTY+TEKF D+P GEVI Sbjct 367 VNHLAVHTEDHPMDYIDFAGEIPKGEYGGGEVHIWDTGTYETEKFRDNPPDGPAKGGEVI 426 Query 418 VNLHGGRISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQWA 477 V LHG +I GRYALI+T+G WLAHR+K+Q+ +LAPML T G+V L QWA Sbjct 427 VTLHGQKIEGRYALIQTDGKNWLAHRMKDQQKPTAA---DLAPMLTTEGSVERLTRGQWA 483 Query 478 FEGKWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSS 537 FEGKWDGYRLLV+ADHG + LRSR GRDVTAEYPQL+ALA DLADHHV+LDGEAV LD Sbjct 484 FEGKWDGYRLLVDADHGKLTLRSRRGRDVTAEYPQLKALAADLADHHVILDGEAVALDED 543 Query 538 GVPSFSQMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSLTVPELLP 597 GVPSF +MQNR R TRVEFWAFD+L+LDGR L Y DRRKLLE LA L VP L Sbjct 544 GVPSFGEMQNRARSTRVEFWAFDILFLDGRLLTKATYTDRRKLLEALAEGGGLIVPPALE 603 Query 598 GDGAQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRS 657 GDG +A +R WEGVIAK+RDS YQPGRR ++W+KDK WNTQEVVIGGWR GEGGR+ Sbjct 604 GDGPEALEYARSQRWEGVIAKKRDSTYQPGRRSSAWIKDKIWNTQEVVIGGWRQGEGGRT 663 Query 658 SGVGSLLMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGI 717 SG+G+L++G+P GL F GRVGTG ++++LA+LK+ L PL TDESPF LP +DAKG+ Sbjct 664 SGIGALVLGVPDDDGLHFVGRVGTGFTDKQLASLKKTLEPLRTDESPFAAELPKQDAKGV 723 Query 718 TYVKPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEV 756 T+V+P LV EVRYSE T +GRLRQ+SWRGLR DK P +V Sbjct 724 TFVRPELVGEVRYSERTSDGRLRQASWRGLRDDKVPEDV 762 >gi|315442864|ref|YP_004075743.1| DNA ligase D/DNA polymerase LigD [Mycobacterium sp. Spyr1] gi|315261167|gb|ADT97908.1| DNA ligase D/DNA polymerase LigD [Mycobacterium sp. Spyr1] Length=766 Score = 1048 bits (2710), Expect = 0.0, Method: Compositional matrix adjust. Identities = 519/759 (69%), Positives = 603/759 (80%), Gaps = 13/759 (1%) Query 8 RVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQPAFFEKQ 67 RV LTN DKVLYPA+GTTK+ +F+YY VAE ML HIAGR TRKRWPNGV++ +FFEKQ Sbjct 7 RVKLTNPDKVLYPASGTTKAQVFEYYVNVAEGMLPHIAGRAVTRKRWPNGVEESSFFEKQ 66 Query 68 LALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFV--AEPGS-- 123 LA SAP WL R T+AH+SGTTTYP+ID+ GLAWIAQQAALEVHVPQWRF + G+ Sbjct 67 LASSAPDWLDRGTIAHKSGTTTYPVIDTVEGLAWIAQQAALEVHVPQWRFTRGGQSGAAD 126 Query 124 -GELNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLYTP 182 G+ PGPATR+VFDLDPGEGV QL EVA VR+L+ DIGL TFP+TSGSKGLHLY P Sbjct 127 GGDGKPGPATRIVFDLDPGEGVTFRQLCEVAHEVRELITDIGLTTFPLTSGSKGLHLYVP 186 Query 183 LDEPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAPYS 242 L++P+SSRGA+VLAKRVAQ+LEQ+MP VT+TMTKSLR GKVF+DWSQN+G+KTTIAPYS Sbjct 187 LEDPISSRGASVLAKRVAQQLEQSMPKRVTATMTKSLRDGKVFLDWSQNNGNKTTIAPYS 246 Query 243 LRGRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRYRR 302 LRGR PTVAAPRTW E++DP LR L++DEVL R+ RDGDLL LD P D+LTRYR Sbjct 247 LRGRERPTVAAPRTWDEIEDPDLRHLTFDEVLDRLERDGDLLADLDPPLPATDKLTRYRS 306 Query 303 MRDASKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLECDGVLVSWAVPKNLPDNTS 362 MRD +KTPEP+P P TG + FVIQEHHARR HYDFRLE DGVLVSWAVPKNLPD S Sbjct 307 MRDRTKTPEPVPAEPPETGANDKFVIQEHHARRLHYDFRLERDGVLVSWAVPKNLPDTPS 366 Query 363 VNHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDP-----HTGEVI 417 VNHLA+HTEDHP++Y F G IP GEYG G+V IWD+GTY+TEKF D+P GEVI Sbjct 367 VNHLAVHTEDHPMDYIDFAGEIPKGEYGGGEVHIWDTGTYETEKFRDNPPDGPAKGGEVI 426 Query 418 VNLHGGRISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQWA 477 V LHG +I GRYALI+T+G WLAHR+K+Q+ +LAPML T G+V L QWA Sbjct 427 VTLHGQKIEGRYALIQTDGKNWLAHRMKDQQKPTAA---DLAPMLTTEGSVERLTRGQWA 483 Query 478 FEGKWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSS 537 FEGKWDGYRLLV+ADHG + LRSR GRDVTAEYPQL+ALA DLADHHV+LDGEAV LD Sbjct 484 FEGKWDGYRLLVDADHGKLTLRSRRGRDVTAEYPQLKALAADLADHHVILDGEAVALDED 543 Query 538 GVPSFSQMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSLTVPELLP 597 GVPSF +MQNR R TRVEFWAFD+L+LDGR L Y DRRKLLE LA L VP L Sbjct 544 GVPSFGEMQNRARSTRVEFWAFDILFLDGRLLTKATYTDRRKLLEALAEGGGLIVPPALE 603 Query 598 GDGAQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRS 657 GDG +A +R WEGVIAK+RDS YQPGRR ++W+KDK WNTQEVVIGGWR GEGGR+ Sbjct 604 GDGPEALEYARSQRWEGVIAKKRDSTYQPGRRSSAWIKDKIWNTQEVVIGGWRQGEGGRT 663 Query 658 SGVGSLLMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGI 717 SG+G+L++G+P GL F GRVGTG ++++LA+LK+ L PL TDESPF LP +DAKG+ Sbjct 664 SGIGALVLGVPDDDGLHFVGRVGTGFTDKQLASLKKSLEPLRTDESPFAAELPKQDAKGV 723 Query 718 TYVKPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEV 756 T+V+P LV EVRYSE T +GRLRQ+SWRGLR DK P +V Sbjct 724 TFVRPELVGEVRYSERTSDGRLRQASWRGLRDDKVPEDV 762 >gi|333989521|ref|YP_004522135.1| ATP dependent DNA ligase [Mycobacterium sp. JDM601] gi|333485489|gb|AEF34881.1| ATP dependent DNA ligase [Mycobacterium sp. JDM601] Length=758 Score = 1028 bits (2659), Expect = 0.0, Method: Compositional matrix adjust. Identities = 542/756 (72%), Positives = 602/756 (80%), Gaps = 7/756 (0%) Query 6 EQRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQPAFFE 65 + RV LTNADKVLYPATGTTK+ ++ YY +AEVML HIAGRP TRKRWPNGV Q +FFE Sbjct 7 QTRVKLTNADKVLYPATGTTKAQVYHYYTRIAEVMLPHIAGRPVTRKRWPNGVAQDSFFE 66 Query 66 KQLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAE-PGSG 124 KQLA SAP WL RA V HRSG T YPIID GLAWIAQQAALEVHVPQWRF AE G G Sbjct 67 KQLASSAPAWLPRAEVQHRSGITAYPIIDDLDGLAWIAQQAALEVHVPQWRFEAEWTGGG 126 Query 125 E-LNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLYTPL 183 L PGPA+RLVFDLDPGEGV M+QLA+VARA+RDL+A++ L TFPVTSGSKG+H+Y L Sbjct 127 RVLKPGPASRLVFDLDPGEGVSMSQLAQVARAIRDLMAELDLDTFPVTSGSKGIHVYAAL 186 Query 184 DEPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAPYSL 243 D PV+S GA +AKRVAQ+LE AMP LVT+TM K LRAGKVFVDWSQN+ SKTTIAPYSL Sbjct 187 DRPVASAGAVAVAKRVAQQLESAMPKLVTATMAKKLRAGKVFVDWSQNNASKTTIAPYSL 246 Query 244 RGRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRYRRM 303 RGR HPTVAAPR+WAELDDP LRQL +DEVL R+ DGDLL LD DRL YR Sbjct 247 RGRDHPTVAAPRSWAELDDPDLRQLRFDEVLERVEHDGDLLAGLDGPLEGQDRLAVYRAK 306 Query 304 RDASKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLECDGVLVSWAVPKNLPDNTSV 363 RDA +TPEP+P A P G+GN+FVIQEHHARR HYDFRLE DGVLVSWAVPKNLP TSV Sbjct 307 RDAGRTPEPVPAAAPAAGEGNSFVIQEHHARRLHYDFRLERDGVLVSWAVPKNLPTTTSV 366 Query 364 NHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNLHGG 423 NHLA+ TEDHPLEY FEG IP GEYGAG V IWDSG+Y TEK+ D GEVIV L G Sbjct 367 NHLAVRTEDHPLEYGGFEGTIPKGEYGAGTVRIWDSGSYVTEKWQDTSEKGEVIVVLRGD 426 Query 424 RISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQWAFEGKWD 483 RISGRYALIRT GD+WLAHR+ KDQ+ F F +LAPMLATHG+V+GL WAFEGKWD Sbjct 427 RISGRYALIRTGGDQWLAHRM---KDQQTFAFTDLAPMLATHGSVSGLDPKVWAFEGKWD 483 Query 484 GYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVPSFS 543 GYRLLVEAD G VRLR+RSGRDVT EYPQL+ LA +L +HHVVLDGE V LD++GVPSF+ Sbjct 484 GYRLLVEADRGRVRLRARSGRDVTGEYPQLQTLAAELTEHHVVLDGEVVALDAAGVPSFA 543 Query 544 QMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSLTVPELLPGDGAQA 603 MQN R TRV+FWAFDLLYLDGR LL Y+DRR+LL TLA T L V +LL GA+A Sbjct 544 AMQNSARSTRVKFWAFDLLYLDGRPLLRAAYRDRRRLLATLAQGTGLVVKDLLAAGGAEA 603 Query 604 FACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRSSGVGSL 663 SR+ GWEGVIAK+ DS YQPGRR +WVKDKHW TQEVVIGGWRAGEG R G+GSL Sbjct 604 LEQSRRLGWEGVIAKKWDSPYQPGRRSPAWVKDKHWRTQEVVIGGWRAGEGARGGGIGSL 663 Query 664 LMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYVKPA 723 LMGIP GL+F GRVGTG +ER LA LK+ L P TDESPFD PLP DAKG+T+V+P Sbjct 664 LMGIPEGDGLRFVGRVGTGFTERALAALKKELTP--TDESPFDAPLPRADAKGVTFVRPT 721 Query 724 LVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE 759 LV EVRYSE T +GRLRQ SWRGLRPDK P +VV E Sbjct 722 LVGEVRYSERTADGRLRQPSWRGLRPDKTPDDVVSE 757 >gi|169628128|ref|YP_001701777.1| ATP-dependent DNA ligase [Mycobacterium abscessus ATCC 19977] gi|169240095|emb|CAM61123.1| Putative ATP-dependent DNA ligase [Mycobacterium abscessus] Length=750 Score = 994 bits (2569), Expect = 0.0, Method: Compositional matrix adjust. Identities = 505/753 (68%), Positives = 580/753 (78%), Gaps = 21/753 (2%) Query 17 VLYPAT----GTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQPAFFEKQLALSA 72 +LYPAT TTK+D+F YY +A ML HIAGRP TRKRWPNG+DQP+FFEK LA SA Sbjct 1 MLYPATDTSPATTKADVFGYYTAIAPFMLPHIAGRPVTRKRWPNGIDQPSFFEKDLASSA 60 Query 73 PPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAEPGSGELNPGPAT 132 P WL R + H+S +YP+ID++ LAWIAQQAALEVHVPQWRF E NPGPAT Sbjct 61 PDWLPRRRIEHKSRYVSYPLIDTSVALAWIAQQAALEVHVPQWRFAGE------NPGPAT 114 Query 133 RLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLYTPLDEPVSSRGA 192 RLVFDLDPGEGV MAQLAEVARA+RD+LADIGL TFPVTSGSKGLHLY PL +P SS GA Sbjct 115 RLVFDLDPGEGVGMAQLAEVARAIRDVLADIGLTTFPVTSGSKGLHLYVPLAQPASSSGA 174 Query 193 TVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAPYSLRGRTHPTVA 252 +AK+VA +LEQ MP LVT+TMT+ LRAGKVFVDWSQNSGSKTT+APYSLRGR PTVA Sbjct 175 VAVAKKVAVQLEQVMPDLVTATMTRQLRAGKVFVDWSQNSGSKTTVAPYSLRGRAVPTVA 234 Query 253 APRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRYRRMRDASKTPEP 312 APRTW ELDDP LRQL YDEVLTR RDGDLL LD DRL+ YR MRD ++TPEP Sbjct 235 APRTWEELDDPGLRQLRYDEVLTRAQRDGDLLAGLDDVEIAEDRLSTYRSMRDPTRTPEP 294 Query 313 IPTAKPVTGDGNTFVIQEHHARRPHYDFRLECDGVLVSWAVPKNLPDNTSVNHLAIHTED 372 +P KP G N+FVIQEHHA HYDFRLE DGVLVSWAVPKNLP SVNHLA+HTED Sbjct 295 VPAVKPEAGQDNSFVIQEHHATALHYDFRLERDGVLVSWAVPKNLPLEPSVNHLAVHTED 354 Query 373 HPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKF--------HDDPHTGEVIVNLHGGR 424 HPLEY +FEG IP GEYGAG+V IWDSGTYDTEKF D GEVIV LHG R Sbjct 355 HPLEYGSFEGTIPKGEYGAGEVTIWDSGTYDTEKFIDPRDDSGADGGQKGEVIVTLHGKR 414 Query 425 ISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQWAFEGKWDG 484 I+GRYALIRTNG +WL HR+K+Q+ LAPML T G+VAGL A +WAFEGKWDG Sbjct 415 ITGRYALIRTNGKQWLVHRMKDQRPAGSMPV-GLAPMLPTTGSVAGLTAEEWAFEGKWDG 473 Query 485 YRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVPSFSQ 544 YRL++E D G +R +RSGRDVTAE+P L+ LA +L+DH VVLDGE VV D G+PSF+ Sbjct 474 YRLILECDRGQLRALARSGRDVTAEFPALQRLAHELSDHRVVLDGEVVVPDRKGLPSFAL 533 Query 545 MQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANAT-SLTVPELLPGDGAQA 603 +QNR + FWAFDLLYLDG++LL T+Y+DRR+LLE L T S+TVP+ L GDGA A Sbjct 534 LQNRTPGADIRFWAFDLLYLDGKSLLRTKYRDRRRLLEVLVTGTESMTVPQQLSGDGAAA 593 Query 604 FACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRSSGVGSL 663 A S+ GWEGV+AKR DS Y PG R SW+K K+W++QEVVIGGWR G+GGRSSG+GSL Sbjct 594 LAYSQDQGWEGVVAKRLDSTYVPG-RTQSWIKAKNWSSQEVVIGGWRKGQGGRSSGIGSL 652 Query 664 LMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYVKPA 723 LMGIP GGL++AGRVGTG +EREL++LKE L PLH ESPFD PL +AK + +V+P Sbjct 653 LMGIPVEGGLRYAGRVGTGFTERELSSLKERLEPLHRAESPFDAPLSTVEAKDVQFVEPV 712 Query 724 LVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEV 756 LVAEVRY + TP G L+ SSWRGLR DK +V Sbjct 713 LVAEVRYGDRTPGGILKHSSWRGLRTDKSVRDV 745 >gi|229489180|ref|ZP_04383046.1| ATP dependent DNA ligase C region family protein [Rhodococcus erythropolis SK121] gi|229324684|gb|EEN90439.1| ATP dependent DNA ligase C region family protein [Rhodococcus erythropolis SK121] Length=760 Score = 872 bits (2254), Expect = 0.0, Method: Compositional matrix adjust. Identities = 443/755 (59%), Positives = 530/755 (71%), Gaps = 17/755 (2%) Query 9 VTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQPAFFEKQL 68 V++TN K+LYP +GTTK+++ DYY +A VML H+ GRP TRKRWPNGVD +FFEK L Sbjct 16 VSVTNLGKILYPESGTTKAEVIDYYTRIAAVMLPHVVGRPGTRKRWPNGVDGQSFFEKNL 75 Query 69 ALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAEPGSGELNP 128 A SAP WL+RA++ H TYP+ DS LAW+ QQAALE+HVPQWRF GS Sbjct 76 ASSAPQWLTRASLQHSDRVVTYPVFDSVASLAWLGQQAALELHVPQWRF---DGS---ER 129 Query 129 GPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLYTPLDEPVS 188 GPATRLVFDLDPGEGV + + AEVAR++RDL+A +G +PVTSGSKG+HLY PLD + Sbjct 130 GPATRLVFDLDPGEGVGLTECAEVARSIRDLVATLGWTAYPVTSGSKGIHLYVPLDRALD 189 Query 189 SRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAPYSLRGRTH 248 GA+ +AK++A LE+ P LVT+TM +++RAGK+FVDWSQN+ +KTTIAPYS+RGR Sbjct 190 GSGASTVAKQIATGLEKLHPDLVTATMARNVRAGKIFVDWSQNNAAKTTIAPYSMRGRDQ 249 Query 249 PTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLD--ADAPVADRLTRYRRMRDA 306 P VAAPR+W ELDDP LR L +DEVL R+ DGDLL LD A VAD LT YR R A Sbjct 250 PYVAAPRSWDELDDPKLRHLLFDEVLERVESDGDLLGDLDPPVSAAVADTLTHYRNKRSA 309 Query 307 SKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLECDGVLVSWAVPKNLPDNTSVNHL 366 +TPEPIP A GNTFVIQEHHARR HYD RLE DGVLVSWAVPK +P + N L Sbjct 310 DRTPEPIPAAVTKETAGNTFVIQEHHARRLHYDVRLERDGVLVSWAVPKGVPTSAGENRL 369 Query 367 AIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNLHGGRIS 426 A+HTEDHPLEYATF G IP GEYG G + IWDSGTY+TEK+ +D EVIV L G R+ Sbjct 370 AVHTEDHPLEYATFSGTIPKGEYGGGSMTIWDSGTYETEKWRED----EVIVRLSGKRVQ 425 Query 427 GRYALIRTNGDRWLAHRLKNQKDQKVFEF-DNLAPMLATHGTVAGLKASQWAFEGKWDGY 485 GR+ALIRT GD+WL H +K+Q EF NL PMLAT GT+ GL + +WAFEGKWDG Sbjct 426 GRFALIRTKGDQWLMHLMKDQNASFGTEFPKNLEPMLATAGTLEGLDSQEWAFEGKWDGI 485 Query 486 RLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVPSFSQM 545 R+++E G + LRSR+G D T +YP L LAE L H VVLDGE V + +GV F + Sbjct 486 RVILEYHSGTMSLRSRAGNDKTGDYPSLAGLAEVLDGHDVVLDGEVVAYNDAGVTDFGLL 545 Query 546 QNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANAT-SLTVPELLPGDGAQAF 604 Q G F AFDLLYLDG +LL Y DRR +L LA L VP + G A Sbjct 546 QRGGEPV---FLAFDLLYLDGVSLLRKSYSDRRTVLNALAGKVGELEVPPQIEGTAENAL 602 Query 605 ACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRSSGVGSLL 664 S GWEG++AKRR S Y PGRR +SW+K K+W TQEVVIGGWR G+G R+ G+G+LL Sbjct 603 EVSTDAGWEGIVAKRRASVYLPGRRGSSWIKVKNWRTQEVVIGGWRTGQGNRAQGIGALL 662 Query 665 MGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYVKPAL 724 MGIPG GL + GRVGTG S+R+L +L L PL ESPF LPA D KG +V+P L Sbjct 663 MGIPGEDGLTYVGRVGTGFSDRDLESLLATLEPLRQKESPFGEELPADDRKGAVWVRPEL 722 Query 725 VAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE 759 V EVR+ +WT RLR SWRGLR DKKP +VVRE Sbjct 723 VGEVRFMDWTKTERLRHPSWRGLREDKKPGDVVRE 757 >gi|226308009|ref|YP_002767969.1| ATP-dependent DNA ligase LigD [Rhodococcus erythropolis PR4] gi|226187126|dbj|BAH35230.1| ATP-dependent DNA ligase LigD [Rhodococcus erythropolis PR4] Length=758 Score = 864 bits (2233), Expect = 0.0, Method: Compositional matrix adjust. Identities = 439/752 (59%), Positives = 526/752 (70%), Gaps = 17/752 (2%) Query 9 VTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQPAFFEKQL 68 V++TN K+ YP +GTTK+++ DYY +A VML H+ GRP TRKRWPNGVD +FFEK L Sbjct 16 VSVTNLGKIFYPESGTTKAEVIDYYTRIAAVMLPHVVGRPGTRKRWPNGVDGQSFFEKNL 75 Query 69 ALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAEPGSGELNP 128 A SAP WL+RA++ H TYPI DS LAW+ QQAALE+HVPQWRF GS Sbjct 76 ASSAPQWLTRASLQHSDRVVTYPIFDSVASLAWLGQQAALELHVPQWRF---DGS---ER 129 Query 129 GPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLYTPLDEPVS 188 GPATRLVFDLDPGEGV +A+ AEVAR++RDL+A +G +PVTSGSKG+HLY PLD + Sbjct 130 GPATRLVFDLDPGEGVGLAECAEVARSIRDLVATLGWTAYPVTSGSKGIHLYVPLDRALD 189 Query 189 SRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAPYSLRGRTH 248 GA+ +AK++A LE+ P LVT+TM +++RAGK+FVDWSQN+ +KTTIAPYS+RGR Sbjct 190 GSGASTVAKQIATGLEKLHPDLVTATMARNVRAGKIFVDWSQNNAAKTTIAPYSMRGRDQ 249 Query 249 PTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLD--ADAPVADRLTRYRRMRDA 306 P VAAPR+W ELDDP LR L +DEVL R+ DGDLL LD A VAD L YR R A Sbjct 250 PYVAAPRSWDELDDPKLRHLLFDEVLERVESDGDLLGDLDPPVSAAVADTLAHYRNKRSA 309 Query 307 SKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLECDGVLVSWAVPKNLPDNTSVNHL 366 +TPEPIP A GNTFVIQEHHARR HYD RLE DGVLVSWAVPK +P + N L Sbjct 310 DRTPEPIPAAVANETAGNTFVIQEHHARRLHYDVRLERDGVLVSWAVPKGVPTSAGENRL 369 Query 367 AIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNLHGGRIS 426 A+HTEDHPLEYATF G IP GEYG G + IWDSGTY+TEK+ +D EVIV L G R+ Sbjct 370 AVHTEDHPLEYATFAGTIPKGEYGGGSMTIWDSGTYETEKWRED----EVIVRLSGERVQ 425 Query 427 GRYALIRTNGDRWLAHRLKNQKDQKVFEF-DNLAPMLATHGTVAGLKASQWAFEGKWDGY 485 GR+ALIRT GD+WL H +K+Q EF NL PMLAT GT+ GL +WAFEGKWDG Sbjct 426 GRFALIRTKGDQWLMHLMKDQNASFGTEFPKNLEPMLATAGTLEGLDPQEWAFEGKWDGI 485 Query 486 RLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVPSFSQM 545 R+++E G + LRSR+G D T +YP L LA L H VVLDGE V + +GV F + Sbjct 486 RVILEYRSGTMSLRSRAGNDKTRDYPALAGLAAVLDGHDVVLDGEVVAYNDAGVTDFGLL 545 Query 546 QNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANAT-SLTVPELLPGDGAQAF 604 Q G F AFDLLYLDG +LL Y DRR +L LA L VP + G A Sbjct 546 QRGGEPV---FLAFDLLYLDGVSLLRKSYSDRRTVLNALAGKVGELEVPPQIEGTAENAL 602 Query 605 ACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRSSGVGSLL 664 S GWEG++AKRR S Y PGRR +SW+K K+W TQEVVIGGWR G+G R+ G+G+LL Sbjct 603 EVSTDAGWEGIVAKRRASVYLPGRRGSSWIKVKNWRTQEVVIGGWRTGQGNRAQGIGALL 662 Query 665 MGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYVKPAL 724 MGIPG GL + GRVGTG S+R+L +L +L PL ESPF+ LPA D KG +V+P L Sbjct 663 MGIPGEDGLTYVGRVGTGFSDRDLESLLAVLEPLRQKESPFEEELPADDRKGAVWVRPEL 722 Query 725 VAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEV 756 V E R+ +WT GRLR SWRGLR DKKP +V Sbjct 723 VGEARFMDWTATGRLRHPSWRGLREDKKPGDV 754 >gi|226364522|ref|YP_002782304.1| ATP-dependent DNA ligase [Rhodococcus opacus B4] gi|226243011|dbj|BAH53359.1| ATP-dependent DNA ligase LigD [Rhodococcus opacus B4] Length=758 Score = 825 bits (2130), Expect = 0.0, Method: Compositional matrix adjust. Identities = 435/755 (58%), Positives = 529/755 (71%), Gaps = 20/755 (2%) Query 7 QRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQPAFFEK 66 R++LTN KVLYP +GT K ++ DYY+ +A ML H+ RPATRKRWPNGVD FFEK Sbjct 14 HRLSLTNLGKVLYPESGTVKGEVIDYYSRIAPAMLPHVVDRPATRKRWPNGVDSEPFFEK 73 Query 67 QLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAEPGSGEL 126 LA SAP WL R + H + YP+++S L W QQAALE+HVPQWRF Sbjct 74 NLAASAPGWLERRALEHSDRSVHYPLLNSVAALVWAGQQAALELHVPQWRFDGS------ 127 Query 127 NPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLYTPLDEP 186 + GPATR+VFDLDPG GV + + AEVARAVRDL+A++G +PVTSGSKG+HLY PLD Sbjct 128 HRGPATRIVFDLDPGPGVGLVECAEVARAVRDLVANLGWTAYPVTSGSKGIHLYVPLDRK 187 Query 187 VSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAPYSLRGR 246 + GA+ +AK+VA LE+ P LVT+TM KS+RAGKVFVDWSQN+ SKTTIAPYSLRGR Sbjct 188 LDGSGASTVAKQVATGLEKLRPELVTATMAKSVRAGKVFVDWSQNNPSKTTIAPYSLRGR 247 Query 247 THPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRYRRMRDA 306 + P VAAPR+W ELDDP LRQL ++EVL R DGDLL LD L YRR RD Sbjct 248 SEPYVAAPRSWDELDDPGLRQLRFEEVLERWESDGDLLAGLDPPIEDDTALAEYRRKRDP 307 Query 307 SKTPEPIP-TAKPVTGDGNTFVIQEHHARRPHYDFRLECDGVLVSWAVPKNLPDNTSVNH 365 +TPEP+P T +P G GN+FVIQEHHARR HYD RLE DGVLVSWAVPKN+P T N Sbjct 308 GRTPEPMPHTVQP--GAGNSFVIQEHHARRLHYDLRLERDGVLVSWAVPKNVPTTTGENR 365 Query 366 LAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNLHGGRI 425 LA+HTEDHPLEY TF G+IP GEYG G++ IWD+GTYDTEK+ DD EVIV LHG ++ Sbjct 366 LAVHTEDHPLEYLTFSGSIPKGEYGGGQMTIWDTGTYDTEKWRDD----EVIVQLHGEQV 421 Query 426 SGRYALIRTNGDRWLAHRLKNQK--DQKVFEF-DNLAPMLATHGTVAGLKASQWAFEGKW 482 GR+ALIRT GD+WL H +K+Q + E L+PMLA+ GT+ GL A +WAFEGKW Sbjct 422 EGRFALIRTKGDQWLMHLMKDQSPGGSRSSELPRGLSPMLASPGTLDGLGADEWAFEGKW 481 Query 483 DGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVPSF 542 DG R++ E G +++ SR+G D T +Y QL LA+ L DH VVLDGE V D GV +F Sbjct 482 DGIRVIAEISGGELKMTSRAGNDKTRDYAQLGWLADSLEDHEVVLDGEVVAFDERGVANF 541 Query 543 SQMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETL-ANATSLTVPELLPGDGA 601 +Q + F AFD+LYLDG +LL +Y DRR++LE L A L VP L G Sbjct 542 GLLQ---QGNEPHFLAFDVLYLDGVSLLRKKYTDRRRVLEALAAKVDDLVVPPQLHGSAQ 598 Query 602 QAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRSSGVG 661 +A SR+ GWEGV+AKRR+S Y PG+R +SW+K K+W TQE VIGGWR G+GGRSSG+G Sbjct 599 EALDESRRKGWEGVVAKRRESVYLPGKRGSSWIKVKNWRTQEAVIGGWRRGQGGRSSGIG 658 Query 662 SLLMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYVK 721 S+L+G+P GL++ GRVGTG +ER+L L L PL TD SPF LP D KG +V Sbjct 659 SVLLGVPEDEGLRYIGRVGTGFTERDLQELAATLGPLETDTSPFVEDLPTADRKGAVWVT 718 Query 722 PALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEV 756 P LVAEVR+ +WT RLR SWRGLR DK P +V Sbjct 719 PTLVAEVRFMDWTGSRRLRHPSWRGLRNDKAPEDV 753 >gi|111022015|ref|YP_704987.1| ATP-dependent DNA ligase [Rhodococcus jostii RHA1] gi|110821545|gb|ABG96829.1| DNA ligase (ATP) [Rhodococcus jostii RHA1] Length=766 Score = 820 bits (2117), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/755 (58%), Positives = 526/755 (70%), Gaps = 20/755 (2%) Query 7 QRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQPAFFEK 66 R++LTN KVLYP + TTK ++ DYY +A ML H+ RPATRKRWPNGVD FFEK Sbjct 22 HRLSLTNLGKVLYPESETTKGEVIDYYTRIAPAMLPHVVDRPATRKRWPNGVDSEPFFEK 81 Query 67 QLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAEPGSGEL 126 LA SAP WL R + H + YP+++S LAW QQAALE+HVPQWRF Sbjct 82 NLAASAPAWLERRALEHSDRSVHYPLLNSVAALAWAGQQAALELHVPQWRFDGP------ 135 Query 127 NPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLYTPLDEP 186 + GPATR+VFDLDPG GV + + AEVARAVRDL+A++G +PVTSGSKG+HLY PLD Sbjct 136 HRGPATRIVFDLDPGPGVGLVECAEVARAVRDLVANLGWTAYPVTSGSKGIHLYVPLDRK 195 Query 187 VSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAPYSLRGR 246 + GA+ +AK+VA LE+ P LVT+TM K++RAGKVFVDWSQN+ SKTTIAPYSLRGR Sbjct 196 LDGSGASTVAKQVATGLEKLRPELVTATMAKAVRAGKVFVDWSQNNPSKTTIAPYSLRGR 255 Query 247 THPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRYRRMRDA 306 P VAAPR+W ELDDP LRQL ++EVL R DGDLL LD L YRR RD Sbjct 256 AQPYVAAPRSWDELDDPDLRQLRFEEVLERWESDGDLLAGLDPPIENDATLAEYRRKRDP 315 Query 307 SKTPEPIP-TAKPVTGDGNTFVIQEHHARRPHYDFRLECDGVLVSWAVPKNLPDNTSVNH 365 +TPEP+P T +P G+GN+FVIQEHHARR HYD RLE +GVLVSWAVPKN+P T N Sbjct 316 GRTPEPMPDTVQP--GEGNSFVIQEHHARRLHYDLRLEREGVLVSWAVPKNVPTTTGENR 373 Query 366 LAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNLHGGRI 425 LA+HTEDHPLEY TF G IP GEYG G++ IWD+GTYDTEK+ DD EVIV LHG ++ Sbjct 374 LAVHTEDHPLEYLTFSGTIPKGEYGGGEMAIWDTGTYDTEKWRDD----EVIVQLHGEQV 429 Query 426 SGRYALIRTNGDRWLAHRLKNQKDQKVFEFD---NLAPMLATHGTVAGLKASQWAFEGKW 482 GR+ALIRT GD+WL H +K+Q + L+PMLA+ GT+ GL A +WAFEGKW Sbjct 430 EGRFALIRTKGDQWLMHLMKDQTPGGSHTSELPRGLSPMLASPGTLDGLDADEWAFEGKW 489 Query 483 DGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVPSF 542 DG R++ E G ++L SR+G D T +Y +L LA+ L DH VVLDGE V D GV +F Sbjct 490 DGIRVIAEISGGELKLTSRAGNDKTRDYARLGWLADALGDHEVVLDGEVVAFDERGVANF 549 Query 543 SQMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETL-ANATSLTVPELLPGDGA 601 +Q + F AFD+LYLDG +LL +Y DRR++LE L A L VP L G Sbjct 550 GLLQ---QGNEPHFLAFDVLYLDGVSLLRKKYTDRRRVLEALAAKVDDLVVPPQLHGSAQ 606 Query 602 QAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRSSGVG 661 A SR GWEGV+AKRR+S Y PG+R +SW+K K+W TQE VIGGWR G+GGRS+G+G Sbjct 607 DALDESRGKGWEGVVAKRRESVYLPGKRGSSWIKVKNWRTQEAVIGGWRRGQGGRSTGIG 666 Query 662 SLLMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYVK 721 S+L+G+P GGL++ GRVGTG +ER+L L L PL TD SPF LP D KG +V Sbjct 667 SVLLGVPEDGGLRYIGRVGTGFTERDLQELASTLGPLETDTSPFVEDLPTADRKGAVWVT 726 Query 722 PALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEV 756 P LVAEVR+ +WT RLR SWRGLR DK P +V Sbjct 727 PTLVAEVRFMDWTGSKRLRHPSWRGLRDDKAPEDV 761 >gi|312138527|ref|YP_004005863.1| ATP-dependent DNA ligase [Rhodococcus equi 103S] gi|311887866|emb|CBH47178.1| putative ATP-dependent DNA ligase [Rhodococcus equi 103S] Length=746 Score = 819 bits (2116), Expect = 0.0, Method: Compositional matrix adjust. Identities = 449/755 (60%), Positives = 531/755 (71%), Gaps = 25/755 (3%) Query 7 QRVTLTNADKVLYPATGT----TKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQPA 62 +RV ++ DKVLYPAT TK ++ DYY +A ML H+ RP TRKRWPNGVD+P+ Sbjct 9 RRVAVSRLDKVLYPATANGPAVTKGEVIDYYEAIAPAMLPHVVDRPVTRKRWPNGVDEPS 68 Query 63 FFEKQLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAEPG 122 FFEK LA SAP WL+R V H+ YP+IDSA L WI QQAALEVHVPQWRFV Sbjct 69 FFEKNLAASAPDWLTRHAVHHKDRAVRYPVIDSAAALVWIGQQAALEVHVPQWRFV---- 124 Query 123 SGELNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLYTP 182 GE PGPATRLVFDLDPG+GV +A+ A VA AVRDL+A +G +PVTSGSKG+H+Y P Sbjct 125 DGE--PGPATRLVFDLDPGDGVGLAECARVAAAVRDLVASLGWTAYPVTSGSKGIHVYVP 182 Query 183 LDEPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAPYS 242 LD ++ GA+ +A++VA LEQ P LVT+TM KS+RAG+VFVDWSQN+ +KTTIAPYS Sbjct 183 LDRTLAPGGASTVARKVATSLEQLHPDLVTATMAKSVRAGRVFVDWSQNNAAKTTIAPYS 242 Query 243 LRGRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRYRR 302 LRGR PTVAAPRTW EL+DP LR L +DEVL R RDGDL+ LD P D LT YRR Sbjct 243 LRGRAAPTVAAPRTWDELEDPGLRHLRFDEVLDRFRRDGDLIADLD---PRMDALTEYRR 299 Query 303 MRDASKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLECDGVLVSWAVPKNLPDNTS 362 RDA +TPEPIP G+GN+FVIQEHHARR HYDFRLE DGV+VSWAVP+ LP ++ Sbjct 300 KRDADRTPEPIPQTAAEGGEGNSFVIQEHHARRLHYDFRLERDGVMVSWAVPRGLPTSSK 359 Query 363 VNHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNLHG 422 N LA+HTEDHPLEYA+F G+IP GEYG G V IWD+GTY+ EK+ DD EVIV L G Sbjct 360 ENRLAVHTEDHPLEYASFAGSIPKGEYGGGTVSIWDAGTYEPEKWRDD----EVIVRLSG 415 Query 423 GRISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQWAFEGKW 482 R GRYALIRT GD+WL H +K+ LAPMLAT GT+ GL+ QWAFEGKW Sbjct 416 QRAQGRYALIRTEGDQWLMHLMKDDGGATDLP-RGLAPMLATAGTLDGLEPEQWAFEGKW 474 Query 483 DGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVPSF 542 DG RL+VE D VRLR R+G DVT YP L+ALA L H VVLDGE V LDS G SF Sbjct 475 DGIRLIVEFDGTTVRLRGRAGNDVTERYPALQALAAALDGHRVVLDGEVVSLDSHGNTSF 534 Query 543 SQMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANAT-SLTVPELLPGDGA 601 +Q G +F AFD+LYLDG +LL RY DRR++L+ LA AT L VP L G A Sbjct 535 PALQAGGVP---QFRAFDILYLDGVSLLRKRYDDRRRILDALAAATVGLDVPPQLTGSVA 591 Query 602 QAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRSSGVG 661 A S+ EGV+AKRRDS Y PGRR +W+K K+W TQEVVIGGWR G G R +G+G Sbjct 592 DVRAQSKD--LEGVVAKRRDSIYLPGRRGTAWIKTKNWLTQEVVIGGWRRGRGAREAGIG 649 Query 662 SLLMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYVK 721 SLL+G+P GL++ GRVGTG SERE L E+L PL + SPF +P D + +V Sbjct 650 SLLLGVPDKAGLRYVGRVGTGFSERERERLIELLGPLERESSPFAGEVPDVD-RDTVWVT 708 Query 722 PALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEV 756 P++V EVRY E T GRLR +WRGLR DK P +V Sbjct 709 PSVVGEVRYRERTDAGRLRHPAWRGLRDDKSPDDV 743 >gi|325676187|ref|ZP_08155867.1| DNA ligase [Rhodococcus equi ATCC 33707] gi|325552971|gb|EGD22653.1| DNA ligase [Rhodococcus equi ATCC 33707] Length=736 Score = 815 bits (2105), Expect = 0.0, Method: Compositional matrix adjust. Identities = 447/753 (60%), Positives = 529/753 (71%), Gaps = 25/753 (3%) Query 9 VTLTNADKVLYPATGT----TKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQPAFF 64 + ++ DKVLYPAT TK ++ DYY +A ML H+ RP TRKRWPNGVD+P+FF Sbjct 1 MAVSRLDKVLYPATANGPAVTKGEVIDYYEAIAPAMLPHVVDRPVTRKRWPNGVDEPSFF 60 Query 65 EKQLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAEPGSG 124 EK LA SAP WL+R V H+ YP+IDSA L WI QQAALEVHVPQWRFV G Sbjct 61 EKNLAASAPDWLTRHAVHHKDRAVRYPVIDSAAALVWIGQQAALEVHVPQWRFV----DG 116 Query 125 ELNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLYTPLD 184 E PGPATRLVFDLDPG+GV +A+ A VA AVRDL+A +G +PVTSGSKG+H+Y PLD Sbjct 117 E--PGPATRLVFDLDPGDGVGLAECARVAAAVRDLVASLGWTAYPVTSGSKGIHVYVPLD 174 Query 185 EPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAPYSLR 244 ++ GA+ +A++VA LEQ P LVT+TM KS+RAG+VFVDWSQN+ +KTTIAPYSLR Sbjct 175 RTLAPGGASTVARKVATSLEQLHPDLVTATMAKSVRAGRVFVDWSQNNAAKTTIAPYSLR 234 Query 245 GRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRYRRMR 304 GR PTVAAPRTW EL+DP LR L +DEVL R RDGDL+ LD P D LT YRR R Sbjct 235 GRAAPTVAAPRTWDELEDPGLRHLRFDEVLDRFRRDGDLIADLD---PRMDALTEYRRKR 291 Query 305 DASKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLECDGVLVSWAVPKNLPDNTSVN 364 DA +TPEPIP G+GN+FVIQEHHARR HYDFRLE DGV+VSWAVP+ LP ++ N Sbjct 292 DADRTPEPIPQTAAEGGEGNSFVIQEHHARRLHYDFRLERDGVMVSWAVPRGLPTSSKEN 351 Query 365 HLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNLHGGR 424 LA+HTEDHPLEYA+F G+IP GEYG G V IWD+GTY+ EK+ DD EVIV L G R Sbjct 352 RLAVHTEDHPLEYASFAGSIPKGEYGGGTVSIWDAGTYEPEKWRDD----EVIVRLSGQR 407 Query 425 ISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQWAFEGKWDG 484 GRYALIRT GD+WL H +K+ LAPMLAT GT+ GL+ QWAFEGKWDG Sbjct 408 AQGRYALIRTEGDQWLMHLMKDDGGATDLP-RGLAPMLATAGTLDGLEPEQWAFEGKWDG 466 Query 485 YRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVPSFSQ 544 RL+VE D VRLR R+G DVT YP L+ALA L H VVLDGE V LDS G SF Sbjct 467 IRLIVEFDGTTVRLRGRAGNDVTERYPALQALAAALDGHRVVLDGEVVSLDSHGNTSFPA 526 Query 545 MQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANAT-SLTVPELLPGDGAQA 603 +Q G +F AFD+LYLDG +LL RY DRR++L+ LA AT L VP L G A Sbjct 527 LQAGGVP---QFRAFDILYLDGVSLLRKRYDDRRRILDALAAATVGLDVPPQLTGSVADV 583 Query 604 FACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRSSGVGSL 663 A S+ EGV+AKRRDS Y PGRR +W+K K+W TQEVVIGGWR G G R +G+GSL Sbjct 584 RAQSKD--LEGVVAKRRDSIYLPGRRGTTWIKTKNWLTQEVVIGGWRRGRGAREAGIGSL 641 Query 664 LMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYVKPA 723 L+G+P GL++ GRVGTG SERE L E+L PL SPF +P D + +V P+ Sbjct 642 LLGVPDKAGLRYVGRVGTGFSERERERLIELLGPLERGSSPFAGEVPDVD-RDTVWVTPS 700 Query 724 LVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEV 756 +V EVRY E T GRLR +WRGLR DK P++V Sbjct 701 VVGEVRYRERTDAGRLRHPAWRGLRDDKSPNDV 733 >gi|54022644|ref|YP_116886.1| ATP-dependent DNA ligase [Nocardia farcinica IFM 10152] gi|54014152|dbj|BAD55522.1| putative ATP-dependent DNA ligase [Nocardia farcinica IFM 10152] Length=808 Score = 746 bits (1926), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/803 (52%), Positives = 502/803 (63%), Gaps = 80/803 (9%) Query 9 VTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQPAFFEKQL 68 V L+N DKVLYPATGTTK ++ YY +AE ML HIAGRP TRKRWPNGV+ P+FFEK L Sbjct 18 VELSNLDKVLYPATGTTKGEVIAYYTAIAEAMLPHIAGRPVTRKRWPNGVEAPSFFEKNL 77 Query 69 ALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAEPGSGELNP 128 A APPWL R + H YP+IDS GLAWI QQA+LEVHVPQWRF Sbjct 78 AEHAPPWLERRVLEHSDRRVAYPLIDSEAGLAWIGQQASLEVHVPQWRFDGA------AM 131 Query 129 GPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLYTPLDEPVS 188 GPATR+VFDLDPG GV + + AEVA AVRD++ DIG+ FPVTSGSKG+HLY PLD +S Sbjct 132 GPATRIVFDLDPGPGVGLPECAEVALAVRDMIEDIGMHAFPVTSGSKGIHLYVPLDRVLS 191 Query 189 SRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAPYSLRGRTH 248 GA+ +AK+VA LE+ P LVT+TM K++R GKVF+DWSQN+ +KTTIAPYSLRGR Sbjct 192 PGGASTVAKQVATNLEKLRPDLVTATMAKAVRRGKVFLDWSQNNPAKTTIAPYSLRGRAE 251 Query 249 PTVAAPRTWAELDDPA-LRQLSYDEVLTR-------IARDGDLLERLDADAPV--ADRLT 298 P AAPRTWAE++D A LR L +DEVL R +A L R ADA AD L Sbjct 252 PNAAAPRTWAEIEDAATLRHLRFDEVLARWRDDGDLLADLDPPLSRRGADALPGGADALA 311 Query 299 RYRRMRDASKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLECDGVLVSWAVPKNLP 358 +YR MRD ++TPEP+P P G N FV+QEHHARR H+D RLE DGVL SWAVPK P Sbjct 312 KYRSMRDPARTPEPVPAEPPSRGADNRFVVQEHHARRLHWDVRLERDGVLASWAVPKGPP 371 Query 359 DNTSVNHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIV 418 N LA+HTEDHPLEY F G IP GEYGAG++ IWD+GTY+TEK+ DD EVIV Sbjct 372 TTPKQNRLAVHTEDHPLEYLHFHGVIPKGEYGAGEMTIWDTGTYETEKWRDD----EVIV 427 Query 419 NLHGGRISGRYALIRTNGDRWLAHRLKNQ----------------------------KDQ 450 HG +++GRYALI+TNG++WL H ++ Q +D+ Sbjct 428 RFHGSKLTGRYALIQTNGNQWLMHLMREQPADAETPVGAETPVGAEDSGGPAVDAEIRDE 487 Query 451 KVFEFD-------------------------NLAPMLATHGTVAGLKASQWAFEGKWDGY 485 + D L+PMLA G V L QW FE KWDG+ Sbjct 488 TAGDADAAGGRRSRTTAGAEVGRRGATPVPRGLSPMLAVSGEVGPLDGEQWCFETKWDGF 547 Query 486 RLLVEADHGAVRLRSRSGRDVTAEYPQLRA-LAEDLADHHVVLDGEAVVLDSSGVPSFSQ 544 RL+ E D GAV LRSR+G VT YP++ A LAE+LA H VLDGEAVV D V + Sbjct 548 RLIAEIDAGAVTLRSRAGNVVTDRYPRIAAVLAEELAGHRAVLDGEAVVFDEHNVAQVAL 607 Query 545 MQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETL-ANATSLTVPELLPGDGAQA 603 +Q R EF AFD+LYLDG +LL R+ DRR++LE L A A SL VP L G GA+A Sbjct 608 LQ--ADPARAEFVAFDVLYLDGTSLLRKRFADRRRVLEALGAAAPSLRVPPALDGPGAEA 665 Query 604 FACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRSSGVGSL 663 S +HG EGVIAKR DS Y PG+R SWVK ++W Q VV+GG+R G R SL Sbjct 666 LRYSEEHGLEGVIAKRWDSVYLPGKRGHSWVKQRNWRIQPVVVGGYRR-SGARD--FKSL 722 Query 664 LMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYVKPA 723 L+GIP G L + GRVGTG E+++ L L L SPF L A + K +V+P Sbjct 723 LVGIPHDGELIYVGRVGTGFGEQDMTALARRLRGLERKTSPFANALTAEERKEAVWVRPT 782 Query 724 LVAEVRYSEWTPEGRLRQSSWRG 746 + VR+ WT GRL +W G Sbjct 783 ITGRVRFMNWTDTGRLWHPAWLG 805 >gi|333921832|ref|YP_004495413.1| ATP-dependent DNA ligase LigD [Amycolicicoccus subflavus DQS3-9A1] gi|333484053|gb|AEF42613.1| ATP-dependent DNA ligase LigD [Amycolicicoccus subflavus DQS3-9A1] Length=750 Score = 744 bits (1922), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/751 (54%), Positives = 501/751 (67%), Gaps = 29/751 (3%) Query 9 VTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQPAFFEKQL 68 V LT+ DKVLYP TGTTK +I YY +A VML HI RPATRKRWP+GV FFEK + Sbjct 11 VALTHLDKVLYPETGTTKGEIIAYYEAIASVMLPHIRDRPATRKRWPDGVTATPFFEKNI 70 Query 69 ALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAEPGSGELNP 128 SAP W+ R + H+S T TYP+++S L WI QQAALEVHVPQW +A G P Sbjct 71 PFSAPDWIPRLPLEHKSRTVTYPLLNSTAALVWIGQQAALEVHVPQW--IARSG----KP 124 Query 129 GPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLYTPLDEPVS 188 GPA R+VFDLDPG G +A A VA+ +R++ +IGL +PVTSGSKGLHLY PL +PVS Sbjct 125 GPANRIVFDLDPGPGTTLADCAVVAKRIREIFREIGLPVYPVTSGSKGLHLYVPLVDPVS 184 Query 189 SRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAPYSLRGRTH 248 S A+ +A+ VA LE+A+P LVT+TM+K+ R GK+FVDWSQNS +KTTIAPYSLRG++H Sbjct 185 SAQASRVAQSVAASLERALPELVTATMSKAARPGKIFVDWSQNSAAKTTIAPYSLRGQSH 244 Query 249 PTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLL--ERLDADAPVADRLTRYRRMRDA 306 P VAAPR+W ELDDP + L++ +VL R+ GDLL ER DRL YR RD Sbjct 245 PYVAAPRSWEELDDPHIAHLTFSDVLRRVDEFGDLLSPERPRPSESGPDRLALYRAKRDR 304 Query 307 SKTPEPIPTAKPVTGDGNT---FVIQEHHARRPHYDFRLECDGVLVSWAVPKNLPDNTSV 363 + TPEP+P + + FVIQEHHARR HYDFRLE DGVLVSWAVPKN+PD V Sbjct 305 ALTPEPVPEPSENLKENESEPLFVIQEHHARRLHYDFRLERDGVLVSWAVPKNIPDTPDV 364 Query 364 NHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNLHGG 423 NHLA+ TE+HP+ Y +F G IP G+YGAG+V IWD GTY EK+ DD EVIV LHG Sbjct 365 NHLAVQTEEHPMAYGSFAGEIPRGQYGAGEVKIWDRGTYTLEKWRDD----EVIVELHGK 420 Query 424 RISGRYALIRTNGDRWLAHRLK----NQKDQKVFEFDNLAPMLATHGTVAGLKASQWAFE 479 R GRYALI+T G WL H++K N++ + + L+PMLA ++ L A +WAFE Sbjct 421 RAQGRYALIKTGGKNWLMHKMKAPDANRRVRGIPR--GLSPMLAKSASIKRLDAGEWAFE 478 Query 480 GKWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGV 539 GKWDGYR + E G VRL SRSG DVT +YPQLR L+EDL H VVLDGE V GV Sbjct 479 GKWDGYRAIAEISEGTVRLLSRSGIDVTRDYPQLRQLSEDLGGHEVVLDGELVGFGEEGV 538 Query 540 PSFSQMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSL-TVPELLPG 598 SF++++ R+ + FD+LYLDG +L + DRRK+LE +A +VP LL G Sbjct 539 TSFARLREAPREA--TYLVFDVLYLDGTSLTRKPWSDRRKVLEAVAGLLRCASVPPLLTG 596 Query 599 DGAQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRSS 658 A A S + GWEGVIAKRRDS Y PG+R +W+K K+W TQ VV+GGW+ GEGG Sbjct 597 SAEDAIAESVQRGWEGVIAKRRDSIYLPGQRGTAWLKHKNWRTQNVVVGGWKPGEGGHGG 656 Query 659 GVGSLLMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPF-----DVPLPARD 713 G+G+LL+G+ G L++AGRVGTG SE++ A L E L L ++SPF + Sbjct 657 GIGALLVGVMRDGKLRYAGRVGTGWSEKQRAELLERLTLLVQEKSPFADWASEPESSETQ 716 Query 714 AKGITYVKPALVAEVRYSEWTPEGRLRQSSW 744 + + +V+P + VR+ EWT RLR W Sbjct 717 LRDVVWVRPEMEGTVRFQEWTSARRLRHPVW 747 >gi|258650395|ref|YP_003199551.1| ATP-dependent DNA ligase [Nakamurella multipartita DSM 44233] gi|258553620|gb|ACV76562.1| DNA polymerase LigD, polymerase domain protein [Nakamurella multipartita DSM 44233] Length=831 Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/819 (51%), Positives = 501/819 (62%), Gaps = 76/819 (9%) Query 7 QRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQPAFFEK 66 R+ LT+ KVLYPA+GTTKS++ Y+A VA M+ H+A RP TRKRWP+GV FF K Sbjct 13 HRIALTHLRKVLYPASGTTKSEVIAYFAEVAHAMIPHLADRPVTRKRWPDGVTTAPFFHK 72 Query 67 QLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAEP----- 121 L P W+ R T+ H G YP++DS LAW+ Q AALE+HVPQW F + Sbjct 73 DLPKGTPSWVPRRTIRHSDGPKDYPLVDSPATLAWLGQIAALELHVPQWTFGSAAASVAG 132 Query 122 GSGELNPG-----PATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKG 176 G GE+ RLVFDLDPG GV + A VARAVR+ + LV PVTSGSKG Sbjct 133 GDGEITEAVFDAVHPNRLVFDLDPGPGVELVDCAHVARAVRERMGGAALV--PVTSGSKG 190 Query 177 LHLYTPLDEPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKT 236 +HLY LD ++S A+ A+ +A+ +EQ MP LV S M KSLR GKVF+DWSQN+GSKT Sbjct 191 IHLYAWLDGSLTSDDASAYAREIAEAIEQDMPDLVVSRMAKSLRRGKVFIDWSQNNGSKT 250 Query 237 TIAPYSLRGRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERL-DADAPVAD 295 TIAPYSLRGR HPTVAAPRTW EL DP LR L Y EVL +A D ++ L D D A+ Sbjct 251 TIAPYSLRGREHPTVAAPRTWEELADPELRHLEYTEVLELLAAAPDPMQGLEDGDNDGAE 310 Query 296 --------------RLTRYRRMRDASKTPEPIPTAKPV-TGDGNTFVIQEHHARRPHYDF 340 +L YR MR A KTPEP+P + GD +TFVIQEHHARR HYDF Sbjct 311 TRGGSRRRGRGPDTKLDTYRSMRSADKTPEPVPEPGLLPQGDDDTFVIQEHHARRLHYDF 370 Query 341 RLECDGVLVSWAVPKNLPDNTSVNHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSG 400 RLE DGVLVSWAVPK +P++T NHLA+HTEDHP++YA F G IP GEYG G V IWD G Sbjct 371 RLERDGVLVSWAVPKGVPESTGRNHLAVHTEDHPMDYADFAGEIPHGEYGGGTVSIWDRG 430 Query 401 TYDTEKFHDDPHTGEVIVNLHGGRISGRYALIRTNGDRWLAHRLKNQKDQKVFEFD---- 456 TY TEK+ +D EVI+ LHGG+ GRYALIRT G WL HR+K+Q Q ++D Sbjct 431 TYATEKWRED----EVIIVLHGGKARGRYALIRTGGKNWLMHRMKDQSPQPK-QYDDHRP 485 Query 457 -----------------------NLAPMLATHGTVAGL-KASQWAFEGKWDGYRLLVEAD 492 +L PMLAT G+V + +W FEGKWDG R + Sbjct 486 ATPTAPVTARPAPARSTRPEPPKDLRPMLATAGSVEDVADERRWRFEGKWDGIRAIATVG 545 Query 493 HGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVPSFSQMQNR---- 548 + LRSR G DVT YP+L LAE L H VLDGE V L G SF +MQ R Sbjct 546 PSGLTLRSRLGNDVTPTYPELAVLAELLDGHSAVLDGEIVAL-QDGRTSFHEMQKRMNVQ 604 Query 549 --------GRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSLT-VPELLPGD 599 RD V+FW FD+L LDG +LL RY DRR++LE L + VP L G Sbjct 605 RARDVARVMRDVPVQFWIFDVLNLDGISLLDKRYDDRRRILEALPLTGGVCLVPPQLAGP 664 Query 600 GAQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRSSG 659 A S WEG++AK DS YQPGRR SW+K K++ EVV+ GW G G R Sbjct 665 ARDALRGSADRQWEGIVAKLGDSTYQPGRRSHSWLKIKNFLDLEVVVVGWSPGTGRREGT 724 Query 660 VGSLLMGIP-GPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGIT 718 VG+LL+ +P G GGL++AG+VGTG ++ L L + LAPL D S +P DA G Sbjct 725 VGALLLAVPDGAGGLRYAGKVGTGFTDAILDQLMQALAPLRADRSAVADTIPRADAAGAI 784 Query 719 YVKPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVV 757 +V+P LV EV+Y +WTPE RLR +SWRGLRPDK ++++ Sbjct 785 WVRPELVGEVKYGQWTPERRLRATSWRGLRPDKTVADLI 823 >gi|296137951|ref|YP_003645194.1| DNA polymerase LigD, polymerase domain-containing protein [Tsukamurella paurometabola DSM 20162] gi|296026085|gb|ADG76855.1| DNA polymerase LigD, polymerase domain protein [Tsukamurella paurometabola DSM 20162] Length=778 Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/759 (52%), Positives = 492/759 (65%), Gaps = 19/759 (2%) Query 9 VTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQPAFFEKQL 68 V LTN DKVLYPATGTTK+++ DYY +A V + H+ RP TRKRWPNGVD+ AFFEK+L Sbjct 15 VQLTNLDKVLYPATGTTKAEVIDYYQAIAPVAVPHLRDRPLTRKRWPNGVDKTAFFEKRL 74 Query 69 ALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAEPGSGELNP 128 AP W+ R H G + YP++++ + W+ QQAALE+HVPQW F+A+ G E P Sbjct 75 PSHAPAWIRRGAQHHSDGESLYPVVENTADMVWLGQQAALELHVPQWTFIAD-GENE-EP 132 Query 129 GPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLYTPLDEPVS 188 GP RLV DLDPG G + A +A +RDLLA +GL PVTSGSKG+H+Y+ L +S Sbjct 133 GPPDRLVLDLDPGPGSTLDDCAALALRIRDLLAAMGLDGHPVTSGSKGMHIYSTLPGGLS 192 Query 189 SRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAPYSLRGRTH 248 S GA +A +A +LE P LVT++M+K R G++FVDWSQNSGSKTTI+PYSLRGR H Sbjct 193 SPGARKVAHAIASQLEAESPELVTASMSKDQRGGRIFVDWSQNSGSKTTISPYSLRGREH 252 Query 249 PTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADR---LTRYRRMRD 305 P VAAPR+W EL P L+QL + +VL R+ GDLL L + P L YR RD Sbjct 253 PWVAAPRSWDELSRPGLQQLEFHDVLARVRTSGDLLAPLLSGTPAPPEPVDLDEYRAKRD 312 Query 306 ASKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLECDGVLVSWAVPKNLPDNTSVNH 365 A+KTPEP A TGD FVIQEHHARR HYDFRLE DGVL SWAVPKNLPD+ +VNH Sbjct 313 AAKTPEPFGGAA-STGD-PIFVIQEHHARRLHYDFRLEHDGVLASWAVPKNLPDDPAVNH 370 Query 366 LAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNLHGGRI 425 LA+ TEDHP++YA FEG+IP GEYG G V IWD GTY+ EK+ D EVIV LHG R+ Sbjct 371 LAVRTEDHPMDYAAFEGSIPKGEYGGGDVSIWDHGTYELEKWRKD----EVIVTLHGARL 426 Query 426 SG-RYALIRTNGDRWLAH-RLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQWAFEGKWD 483 G RYALIRT WLAH K PML + T+ L WAFEGKWD Sbjct 427 RGLRYALIRTGEKNWLAHLTKDKTAPAKAAAAQAPDPMLPSESTIDRLSGEDWAFEGKWD 486 Query 484 GYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVPSFS 543 GYR++ GA+ LR+RSGR VT E+P+ +LA DL VVLDGEAVVLD +GVPSF Sbjct 487 GYRIMATVRGGALSLRTRSGRVVTGEFPEFESLARDLDGMDVVLDGEAVVLDDAGVPSFH 546 Query 544 QMQ-NRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLA----NATSLTVPELLPG 598 M R V + FD+L L+G L + RR++LE+LA + S+ VP L+ Sbjct 547 LMAGGESRTGAVRLYLFDVLELNGVDLTKRPWSVRREVLESLAPLLDSDDSIGVPALVEA 606 Query 599 D-GAQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRS 657 G A S + GWEG++AKRRDS Y PG+R +W+K K+W +V IGGW+ G+G R+ Sbjct 607 STGLVAATLSAERGWEGIVAKRRDSPYLPGQRVRAWLKHKNWRDLQVAIGGWKPGKGSRA 666 Query 658 SGVGSLLMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGI 717 + +GS+L+G+P GL + G VG+GL +R+L L + L PL SPF + DA+ Sbjct 667 NRIGSVLVGLPAETGLVYLGSVGSGLRDRDLDALAQRLEPLRMKRSPFTASIDDPDARDA 726 Query 718 TYVKPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEV 756 +V P +V +VRYS G LRQ SWRG R D P ++ Sbjct 727 VWVLPQVVGDVRYSSLRRGGHLRQPSWRGFRDDLLPGDL 765 >gi|262204350|ref|YP_003275558.1| DNA polymerase LigD [Gordonia bronchialis DSM 43247] gi|262087697|gb|ACY23665.1| DNA polymerase LigD, polymerase domain protein [Gordonia bronchialis DSM 43247] Length=797 Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/793 (49%), Positives = 494/793 (63%), Gaps = 52/793 (6%) Query 7 QRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQPAFFEK 66 R+++TN KVLYP TGT K ++ DYY+ +A+V+L H+ GR TRKRWPNGV+ FFEK Sbjct 14 HRISITNLTKVLYPQTGTRKFEVIDYYSRIADVLLPHLRGRLVTRKRWPNGVESTPFFEK 73 Query 67 QLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAEPGSGEL 126 + SAP W++R + H Y ++DS L W+AQ AALE+H QWR + Sbjct 74 DMPESAPAWITRHGIEHSQRVINYAVVDSRATLVWLAQMAALELHAHQWRLPVIDDALRA 133 Query 127 NPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLYTPLDEP 186 N R+V DLDPG GV + + A VAR +RDLLAD G+ T+PVTSG KG+H+Y L P Sbjct 134 N-----RMVLDLDPGPGVPLTECAAVARLIRDLLADAGMDTYPVTSGGKGIHVYARLPRP 188 Query 187 VSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAPYSLRGR 246 VS A LAK +A RL + P +T+TM K+ R ++F+DWSQNSGSKTT++PYSLRGR Sbjct 189 VSPDAARTLAKEIATRLSREHPDTITATMAKTHREQRIFIDWSQNSGSKTTLSPYSLRGR 248 Query 247 THPTVAAPRTWAELDDPALRQLSYDEVLTRIAR--------------DGDLLERLDADAP 292 P VAAPRTW ELDDP L QL Y +VL R+ G E+ + P Sbjct 249 EQPWVAAPRTWDELDDPGLDQLLYTDVLDRVDERGDLLDGLDDDYPASGPPSEQTEVHTP 308 Query 293 ---------VADR----LTRYRRMRDASKTPEPI-------PTAKPVTGDGN-TFVIQEH 331 DR L YRR RDA+KTPEP TA+ G+ FVIQEH Sbjct 309 RPPTEDSTGTDDRQVINLREYRRKRDAAKTPEPFGDESHQSRTAQTAAPSGDPIFVIQEH 368 Query 332 HARRPHYDFRLECDGVLVSWAVPKNLPDNTSVNHLAIHTEDHPLEYATFEGAIPSGEYGA 391 HARR HYDFRLE DGVLVSWAVPKNLP + N LA+ TEDHP++YA FEG IP+GEYG Sbjct 369 HARRLHYDFRLEHDGVLVSWAVPKNLPTDPDQNRLAVRTEDHPMDYADFEGDIPAGEYGG 428 Query 392 GKVIIWDSGTYDTEKFHDDPHTGEVIVNLHGGRISGRYALIRTNGDRWLAHRLKNQKDQK 451 G V IWD GT+ TEK+ + E+IV L G R+ GRYALI+T WLAH + ++ Sbjct 429 GHVSIWDRGTFTTEKWREK----EIIVRLAGERVQGRYALIKTGDKNWLAHLMSDEPRPI 484 Query 452 VFE-FDNLAPMLATHGTVAGLKASQWAFEGKWDGYRLLVEADHGAVRLRSRSGRDVTAEY 510 V + + PMLAT + GL S+WAFEGKWDGYR+L+ G +RL SRSG D+T ++ Sbjct 485 VPDSLSDPRPMLATDEDIEGLSESEWAFEGKWDGYRILLRYIGGELRLTSRSGIDMTRDF 544 Query 511 PQLRALAEDLADHHVVLDGEAVVLDSSGVPSFSQMQNRGRDTR---VEFWAFDLLYLDGR 567 P++ + E L VVLDGE V LDS+G +F+ + +R + + FD+LYL+G Sbjct 545 PEIAEITEHLGLLDVVLDGEVVALDSTGRTNFTLLTSRNHTDEPYTLRLYLFDILYLNGA 604 Query 568 ALLGTRYQDRRKLLETLA----NATSLTVPELLPGDGAQAFACSRKHGWEGVIAKRRDSR 623 +LL + RR+LLE LA ++ + VP LLPG G A SR+H EGV+AKRR S Sbjct 605 SLLRKTWTQRRELLEELAPAFRHSRYVEVPPLLPGPGQVAADHSREHNMEGVVAKRRSSI 664 Query 624 YQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRSSGVGSLLMGIPGPGGLQFAGRVGTGL 683 YQ GRR ASW+K K+W+ EVVIGGWR G G R + +GSLL+G+P GL++ GRVGTG Sbjct 665 YQQGRRSASWLKHKNWSDIEVVIGGWRPGRGSRENTIGSLLLGLPEETGLRYVGRVGTGF 724 Query 684 SERELANLKEMLAPLHTDESPFDVPLPARDAKGITYVKPALVAEVRYSEWTPEGRLRQSS 743 ++ LA+L + L PL SPF L A +V P +V EVR+ +WT G LR S Sbjct 725 TDAALASLAQELEPLRISRSPFLEKLDRPVASTAIWVLPKIVGEVRFMDWTTTGHLRHPS 784 Query 744 WRGLRPDKKPSEV 756 WRG+R DK P ++ Sbjct 785 WRGIRRDKLPGDL 797 >gi|343925398|ref|ZP_08764918.1| ATP-dependent DNA ligase LigD [Gordonia alkanivorans NBRC 16433] gi|343764664|dbj|GAA11844.1| ATP-dependent DNA ligase LigD [Gordonia alkanivorans NBRC 16433] Length=798 Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/797 (48%), Positives = 484/797 (61%), Gaps = 57/797 (7%) Query 7 QRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQPAFFEK 66 +R+++TN KVLYPATGT K D+ DYY+ +A+VML H+ R TRKRWPNGV+ FFEK Sbjct 12 RRISITNLSKVLYPATGTRKYDVIDYYSRIADVMLPHLRNRIVTRKRWPNGVESTPFFEK 71 Query 67 QLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAEPGSGEL 126 + SAP W+ R + H Y + + L W+AQ AALE+HVPQW+ P + Sbjct 72 DMPDSAPDWVRRYGIQHSERVIEYALAEDRATLVWLAQMAALEIHVPQWQLPIGPDGERM 131 Query 127 NPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLYTPLDEP 186 A R+VFDLDPG V + + A VA +R+ L G T+PVTSG KG+H+Y L +P Sbjct 132 ----ANRIVFDLDPGPRVPLHETAAVAVEIRNWLG--GTTTYPVTSGGKGIHIYARLPKP 185 Query 187 VSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAPYSLRGR 246 VSS A +A+ VA + +T+ M+K +R KV +DWSQN+ SKTT++PYSLRGR Sbjct 186 VSSEAARKVAREVANEFARQNSDFITANMSKKIRDDKVLIDWSQNNASKTTLSPYSLRGR 245 Query 247 THPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDA---DAPVAD-------- 295 P VAAPRTW E++DP + QL Y EVL R+A GDLL LDA D P D Sbjct 246 EQPWVAAPRTWDEIEDPKIAQLLYTEVLDRVADVGDLLGGLDAPYDDDPATDADKHGAEE 305 Query 296 ------------RLTRYRRMRDASKTPEPI------PTAKPVTGDGNT----------FV 327 L YRR RD SKTPEP + D +T FV Sbjct 306 PDAEDSQAGQIINLREYRRKRDESKTPEPFGDENHRQRLRESDEDADTESETGPREPIFV 365 Query 328 IQEHHARRPHYDFRLECDGVLVSWAVPKNLPDNTSVNHLAIHTEDHPLEYATFEGAIPSG 387 IQEHHARR HYDFRLE DGVLVSWAVPKNLP + N LA+ TEDHP++YA FEG IP+G Sbjct 366 IQEHHARRLHYDFRLEHDGVLVSWAVPKNLPTDPDQNRLAVQTEDHPMDYADFEGDIPAG 425 Query 388 EYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNLHGGRISGRYALIRTNGDRWLAHRLKNQ 447 EYG G V IWD GT++ EK+ + EVIV LHG ++ GRYALIRT WLAH + ++ Sbjct 426 EYGGGHVSIWDKGTFELEKWREK----EVIVRLHGEKVQGRYALIRTGDKNWLAHLMTDE 481 Query 448 KDQKVFE-FDNLAPMLATHGTVAGLKASQWAFEGKWDGYRLLVEADHGAVRLRSRSGRDV 506 V + + PMLAT + L WAFEGKWDGYRLLV + G RL SRSG D+ Sbjct 482 PRPIVPDSLTDPRPMLATDDPIDKLNERDWAFEGKWDGYRLLVRSIGGEFRLTSRSGIDM 541 Query 507 TAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVPSFSQMQNRGRDTR---VEFWAFDLLY 563 T ++P+ +A+DL VVLDGEAV +DS+G +F+ +R ++ FD+LY Sbjct 542 TKDFPEFAGIADDLGLMDVVLDGEAVAIDSTGRTNFTLFTSRKHTEEQYTLKLHLFDILY 601 Query 564 LDGRALLGTRYQDRRKLLETLANATS----LTVPELLPGDGAQAFACSRKHGWEGVIAKR 619 L+G +LL + RR+LLE LA A + VP LLP + A SR+H EGV+AKR Sbjct 602 LNGTSLLRKPWSVRRELLEELATAFRRSPYVDVPPLLPAPASAAIEYSREHNLEGVVAKR 661 Query 620 RDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRSSGVGSLLMGIPGPGGLQFAGRV 679 RDS YQ GRR W+K K+W+ EVV+GG+R G G RS +GSLL+G+P GL++ GRV Sbjct 662 RDSVYQQGRRSTKWLKHKNWSDIEVVVGGYRPGRGNRSHTIGSLLLGLPEETGLRYVGRV 721 Query 680 GTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYVKPALVAEVRYSEWTPEGRL 739 GTG ++ +L L E L PL SPF L A +V P +V EVR+ +WT G L Sbjct 722 GTGFTDAQLRALAEELEPLEISRSPFLDKLDRPIASSAVWVLPKIVGEVRFMDWTTAGHL 781 Query 740 RQSSWRGLRPDKKPSEV 756 R SWRG+R DK P ++ Sbjct 782 RHPSWRGIRRDKLPGDL 798 >gi|336116132|ref|YP_004570898.1| DNA ligase D [Microlunatus phosphovorus NM-1] gi|334683910|dbj|BAK33495.1| DNA ligase D [Microlunatus phosphovorus NM-1] Length=812 Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/807 (50%), Positives = 496/807 (62%), Gaps = 59/807 (7%) Query 3 SASEQRVT-------LTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWP 55 + SEQ VT LTN DKVLYP TGTTK+++ YYA +A VML H+ RPATRKRWP Sbjct 4 AGSEQTVTVDGHAIKLTNLDKVLYPLTGTTKAEVIGYYAEIAAVMLPHLVDRPATRKRWP 63 Query 56 NGV----DQP-AFFEKQLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEV 110 +GV D P FF K LA P W++R T+AHR YP+++ L W+ Q AALE+ Sbjct 64 DGVGDGTDSPTVFFNKNLARGTPDWVTRFTIAHRDHDNDYPVVNDLATLTWLGQLAALEI 123 Query 111 HVPQWRFVAEPGSGELNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPV 170 HVPQWRF + P RLV DLDPGEGV + + AEVAR + +L DIG ++ PV Sbjct 124 HVPQWRF-----GKDGQPRKPDRLVLDLDPGEGVSLDECAEVARWAKQILDDIGHLSVPV 178 Query 171 TSGSKGLHLYTPLDEPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQ 230 TSGSKG+HLY PLD + + AT +A+ +AQ LE P VT+TM +SLRAGKVF+DWSQ Sbjct 179 TSGSKGIHLYAPLDGSLDAEQATEVARELAQALEADHPDEVTATMKRSLRAGKVFIDWSQ 238 Query 231 NSGSKTTIAPYSLRGRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERL--- 287 N+G+KTT++PYSLRGR HP VAAPRTW EL +P L QL Y EVL R D L Sbjct 239 NNGAKTTVSPYSLRGRLHPWVAAPRTWEELAEPDLAQLDYTEVLERARNRPDPLAAFVTS 298 Query 288 ---DADAPVADRLTRYRRMRDASKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLEC 344 +D ADRLT YR MRD +KTPEP+P P G G+TFVIQEHHARR HYDFRLE Sbjct 299 ASGISDPATADRLTTYRSMRDPAKTPEPVPATPPSGGSGDTFVIQEHHARRLHYDFRLEH 358 Query 345 DGVLVSWAVPKNLPDNTSVNHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDT 404 DGVLVSWAVPK P +T NHLA+ TEDHPLEYATF G IP GEYG G V IWDSGTY+ Sbjct 359 DGVLVSWAVPKGPPTDTGSNHLAVQTEDHPLEYATFAGDIPKGEYGGGHVKIWDSGTYEL 418 Query 405 EKFHDDPHTGEVIVNLHG---GRISGR---YALIRTNG------DRWLAHRLKNQK---D 449 K+ D EVIV LHG G + G+ YALI T G WL H +K + Sbjct 419 HKWRDGK---EVIVTLHGQPNGGLGGQARSYALIHTGGGSRQPEKNWLMHLMKEKPAYGG 475 Query 450 QKVFEFDNLAPMLATHGTVAGLKASQ--WAFEGKWDGYRLLVEADHGAVRLRSRSGRDVT 507 Q++ + MLA+ T ++ +Q +A+E KWDG R +V VR+ SR GRD T Sbjct 476 QEIPFPAEVEAMLASPATPEEIRPAQDEYAYEMKWDGVRSIVSLAGHRVRMTSRRGRDDT 535 Query 508 AEYPQLRALAEDLADHHVVLDGEAVVLDSSGVPSFSQMQNRGRDTR------------VE 555 A YP L + + VLDGE VV D +G P+F +QNR TR + Sbjct 536 AAYPDLVSALTTIDVETAVLDGEIVVTDENGRPTFGLLQNRMNLTRPADIQHAVAAWPAQ 595 Query 556 FWAFDLLYLDGRALLGTRYQDRRKLLETLANAT---SLTVPELLPGDGAQAFACSRKHGW 612 FDLL L+GR+L+ Y+ RR+LLE L + VP + GD A SR Sbjct 596 LMVFDLLELNGRSLIREPYERRRELLEELLPEPVGGRVQVPPIFEGDLDAALETSRALRM 655 Query 613 EGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRSSGVGSLLMGIPGPGG 672 EGV+AKR S YQPGRR +W K K+ +QEVVIGGWR G G R G+GSLL+GIP G Sbjct 656 EGVVAKRHGSIYQPGRRSYTWRKIKYQQSQEVVIGGWRPGHGRREGGMGSLLLGIPDSEG 715 Query 673 LQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYVKPALVAEVRYSE 732 L++ GRVG+G ++ +L + +LA L +SP +P DA+ +V+P LV EV Y E Sbjct 716 LRYVGRVGSGFNDHQLDEMDRLLAGLARHDSPLH-GVPREDARDANWVEPELVGEVVYGE 774 Query 733 WTPEGRLRQSSWRGLRPDKKPSEVVRE 759 T GRLR W+GLR DK P +VV E Sbjct 775 LTGPGRLRHPVWKGLRTDKSPDQVVWE 801 >gi|323359610|ref|YP_004226006.1| ATP-dependent DNA ligase [Microbacterium testaceum StLB037] gi|323275981|dbj|BAJ76126.1| ATP-dependent DNA ligase [Microbacterium testaceum StLB037] Length=825 Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/834 (48%), Positives = 492/834 (59%), Gaps = 101/834 (12%) Query 7 QRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGV---DQPA- 62 +R+ L+N DKVLYP TGTTK ++ DYY+ VA +L H+A RP TRKRWP+GV D P Sbjct 11 RRLRLSNLDKVLYPETGTTKGEVIDYYSRVAARLLPHVADRPVTRKRWPDGVGTADAPGE 70 Query 63 -FFEKQLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAEP 121 FF K L AP W+ R + H SG YP++D L +AQ A+LE+HVPQWRF P Sbjct 71 PFFAKALEPGAPAWVRRFPIDHSSGAKDYPLVDDLPTLVSLAQVASLELHVPQWRF--SP 128 Query 122 GSGELNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLYT 181 NP RLV DLDPG GV + + AEVAR R +L DIGL PVTSGSKG+HLY Sbjct 129 DGERQNP---DRLVLDLDPGPGVGLVECAEVARWARAILRDIGLDPLPVTSGSKGIHLYA 185 Query 182 PLDEPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAPY 241 LD SS A+ +AK +A+ +E P LV S M+K+ R GKVF+DWSQN+GSKTTIAPY Sbjct 186 HLDGKQSSEAASAIAKELARAIEADHPDLVVSQMSKAARPGKVFIDWSQNNGSKTTIAPY 245 Query 242 SLRGRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRYR 301 SLRGR PTVAAPRTW ELDDPALR L + +VL R GD L ++ + L Y Sbjct 246 SLRGRAQPTVAAPRTWEELDDPALRHLLFTDVLERT---GDPLAAVERE---TGPLRAYI 299 Query 302 RMRDASKTPEPIPTA---KPVTGDGNTFVIQEHHARRPHYDFRLECDGVLVSWAVPKNLP 358 R A +TPEP+P A +P FVIQEHHA R H+D RLE GVLVSWAVPK +P Sbjct 300 SKRTAGRTPEPVPEAPHGEPAPEGLPRFVIQEHHASRLHWDLRLEHGGVLVSWAVPKGIP 359 Query 359 DNTSVNHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIV 418 T+ N LA+ TEDHP++Y F G IP GEYGAG + +WD+GTY+ EK+ DD EVI Sbjct 360 STTAKNSLAVMTEDHPMQYLDFTGEIPRGEYGAGIMTVWDTGTYELEKWRDD----EVIA 415 Query 419 NLHG------GRISGRYALIRTNG----DRWLAHRLKNQKDQK-------VFEFD----- 456 L G GR+ R ALIRT G +WL HR+K + + V D Sbjct 416 TLQGRDDGPLGRV--RVALIRTEGRGEKSQWLLHRMKTDAEGRPQADGAPVVALDHGRVG 473 Query 457 -------------------------------NLAPMLATHGT--VAGLKASQWA---FEG 480 ++ PMLAT T +A A +W E Sbjct 474 RDPEPRGAAAGHADGDVDAPDGSRRGAPSPADVRPMLATSATPGLARAAAGRWGQAWVEM 533 Query 481 KWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVP 540 KWDG R + D +RLRSR+G D+TA YP+L + L ++DGE V LD G P Sbjct 534 KWDGIRGIGLWDGRRLRLRSRNGNDLTAAYPELTTVDLGLGPEPAIIDGEIVALDPQGRP 593 Query 541 SFSQMQNR------------GRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANAT 588 SF +Q R R T V + FD+L + R + +RR +LE+LA Sbjct 594 SFPLLQKRMNLAQPREIEREARRTPVHLYLFDVLSVGDRDVSPLPLAERRGILESLAQKA 653 Query 589 SLTVPELLP---GDGAQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVV 645 T P ++P D A A S + G EGV+ K S Y+ G R W+K KH TQEVV Sbjct 654 --TAPVVIPPVFDDVDAAVATSGRFGLEGVVVKDPRSPYRRGERSEQWLKVKHSRTQEVV 711 Query 646 IGGWRAGEGGRSSGVGSLLMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPF 705 +GG R G+G R+ +GSLL+G+P P GL++AGRVG+G SE+ LA L E+LAPL +D PF Sbjct 712 VGGVRPGKGNRAGTIGSLLVGVPDPDGLRYAGRVGSGFSEQTLARLSELLAPLGSDADPF 771 Query 706 DVPLPARDAKGITYVKPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE 759 V +PA DA+ +V+P LVAEV ++E+TP+G LRQ+ WRGLRPDK PSEVVRE Sbjct 772 -VGVPAADARDAIWVRPELVAEVEFAEFTPDGILRQARWRGLRPDKDPSEVVRE 824 >gi|334337489|ref|YP_004542641.1| DNA polymerase LigD, polymerase domain protein [Isoptericola variabilis 225] gi|334107857|gb|AEG44747.1| DNA polymerase LigD, polymerase domain protein [Isoptericola variabilis 225] Length=853 Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/844 (47%), Positives = 486/844 (58%), Gaps = 99/844 (11%) Query 3 SASEQRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQPA 62 S R+ LTN DKVLYPATGTTK ++ Y A +A V++ H A RPATRKRWP+GVD Sbjct 16 SVEGHRLQLTNLDKVLYPATGTTKGEVLHYLAEIAPVLIPHAANRPATRKRWPDGVDGQV 75 Query 63 FFEKQLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAEPG 122 FF+K S P W+ + H++ Y +++ L W+ Q A LEVHVPQW+F G Sbjct 76 FFQKNADKSTPSWVRTRRIEHKTSANDYVLVNDLATLTWLGQTATLEVHVPQWQF----G 131 Query 123 SGELNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLYTP 182 + P RLV DLDPG G + + A+VAR R +L +GL PVTSGSKG+HLY Sbjct 132 RTGVRHNP-DRLVLDLDPGPGAGLPECAQVARWARAILVGMGLEPMPVTSGSKGIHLYAA 190 Query 183 LDEPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAPYS 242 LD S + +AK +A+ LE P LV S M KSLR GKV VDWSQN+G+KTTIAPYS Sbjct 191 LDGKQDSEQVSAVAKELARYLESEHPDLVVSDMKKSLRGGKVLVDWSQNNGNKTTIAPYS 250 Query 243 LRGRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLE-----RLDADAPVADRL 297 LRGR HPTVAAPRTW ELDDP LR L Y EVL R+ARDGDLL L A P + + Sbjct 251 LRGRDHPTVAAPRTWDELDDPDLRHLEYPEVLERVARDGDLLADLTQGHLAALEPTPEHM 310 Query 298 TRYRRM------RDASKTPEPI----PTAKPVTGDGN-TFVIQEHHARRPHYDFRLECDG 346 R+ R+ RD KTPEP P A GD TFVIQEHHARR H+DFRLE DG Sbjct 311 ARFERLEVYRSKRDPDKTPEPFGPSSPAADAPPGDTRPTFVIQEHHARRLHWDFRLEHDG 370 Query 347 VLVSWAVPKNLPDNTSVNHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEK 406 VLVSWA+PK P + + NHLA+ TEDHPLEY +FEG IP+GEYGAG+V IWD+GTYD EK Sbjct 371 VLVSWALPKGEPTDPAKNHLAVQTEDHPLEYGSFEGTIPAGEYGAGEVTIWDAGTYDLEK 430 Query 407 FHDDPHTGEVIVNLHGGRI-SGRYALIRTNG-----DRWLAHRLKNQ------KDQKVFE 454 + D EVIV LH R S R ALI+T G + WL HR K Q ++ Sbjct 431 WVD---GKEVIVTLHSERRGSRRLALIQTGGRDGDENSWLIHRTKEQPGGAGPAEEPATG 487 Query 455 FDNLA------------------PMLATHGT---VAGLKASQWAFEGKWDGYRLLVEA-- 491 D PMLAT T + GL A++WAFE KWDG+R L Sbjct 488 RDGPGRRPRSGTARRAPVELPDRPMLATAATQRELRGLDAAEWAFEMKWDGFRTLATVTM 547 Query 492 -DHG------AVRLRSRSGRDVTAEYPQLRALAEDLA--DHHVVLDGEAVVLDSSGVPSF 542 D G +VRL SR+G D+T YP+L+ALA L+ D VLDGE V LD+ G P F Sbjct 548 PDDGTRGGEPSVRLTSRTGLDMTKTYPELQALAGMLSPDDLPAVLDGEIVALDARGRPEF 607 Query 543 SQMQNRG------------RDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLE-TLANATS 589 ++Q R R +V+ FD+L L G L Y +RR+LLE T+ A Sbjct 608 RRLQQRANLQKKGDVEAARRRVKVDLMLFDVLALAGETLTDRTYDERRRLLERTVRPARP 667 Query 590 LTVPELLPGDGAQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGW 649 + VP GD A SR+ EG++AKRR SRY PGRR W+K KH QEVV+ GW Sbjct 668 VHVPPAFDGDLEAATDTSRELRLEGILAKRRSSRYAPGRRSREWLKLKHSRMQEVVVVGW 727 Query 650 RAGEGGRS----SGVGSLLMGIPGP----GGLQFAGRVGTGLSERELANLKEMLAPLHTD 701 R G + +GSLL+ +P P G L++ G+VGTG E+E + L + Sbjct 728 RPLHAGEAREDDRTMGSLLLALPAPQHGDGALRYVGKVGTGFREKERTQIATRLRGIERA 787 Query 702 ESPFDVPLPARDAKGITYVKPALVAEVRYSEWTP---------EGRLRQSSWRGLRPDKK 752 P D +P +A+ +V P LV EV Y +WT E RLR ++WRG R DK Sbjct 788 TPPVDG-VPRAEARHARWVTPRLVGEVEYGDWTADPTDPDLVDEARLRHATWRGWREDKA 846 Query 753 PSEV 756 P++V Sbjct 847 PADV 850 >gi|229819151|ref|YP_002880677.1| ATP-dependent DNA ligase [Beutenbergia cavernae DSM 12333] gi|229565064|gb|ACQ78915.1| DNA polymerase LigD, polymerase domain protein [Beutenbergia cavernae DSM 12333] Length=816 Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/812 (48%), Positives = 489/812 (61%), Gaps = 77/812 (9%) Query 9 VTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQPAFFEKQL 68 ++LTN DKVL+PATGTTK+++ DYY +A VM+ H+AGR TRKRWPNGV+ FF K L Sbjct 17 LSLTNLDKVLFPATGTTKAELIDYYRRIAPVMIPHLAGRAVTRKRWPNGVETEPFFTKNL 76 Query 69 ALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAEPG-SGELN 127 P W+ R + H T+TYP+++ L W+AQ A++E+HVPQWRF PG S + Sbjct 77 DSGTPDWVPRRGIVHHERTSTYPLVEDTATLVWLAQMASIELHVPQWRF--PPGDSPFVL 134 Query 128 PGPAT---RLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLYTPLD 184 G AT R V DLDPG GV +AQ AEVA A + L D+GL PVTSGSKGLHLY + Sbjct 135 DGSATRPDRFVLDLDPGPGVGLAQCAEVALAAKGYLDDVGLAAIPVTSGSKGLHLYATI- 193 Query 185 EPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAPYSLR 244 VSS A+ AK +A L + +P LV + M +SLR GKVFVD+SQN+ +KTT++PYS+R Sbjct 194 HGVSSEQASAFAKELAGHLAEDLPQLVVTQMKRSLRDGKVFVDYSQNNAAKTTVSPYSVR 253 Query 245 GRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRYRRMR 304 GR P VAAPRTW EL +P L L EVL R A DGDLL L D L+ YR R Sbjct 254 GRDQPWVAAPRTWGELGEPGLAHLELGEVLERAA-DGDLLAPLLP----PDPLSTYRAKR 308 Query 305 DASKTPE---PIPTAKPVTGDGNTFVIQEHHARRPHYDFRLECDGVLVSWAVPKNLPDNT 361 D+++TPE GD FVIQEHHARR H+D RLE DGVL SWAVP+ +P T Sbjct 309 DSARTPEPVPFAAPVAAPAGDPR-FVIQEHHARRLHWDLRLEHDGVLASWAVPRGVPTTT 367 Query 362 SVNHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNLH 421 N LA+HTEDHP+EY TF G+IP GEYG G++ +WD+GTY EKF DD EVI LH Sbjct 368 GHNRLAVHTEDHPMEYLTFHGSIPKGEYGGGEMTVWDTGTYTPEKFRDD----EVIFVLH 423 Query 422 GGRISGRYALIRTNGDR------WLAHRLKNQK------DQKVFEFD------------- 456 G R+ GR+ALIRT+ R WL H +K+Q +++ Sbjct 424 GQRVQGRFALIRTDPGRGGGKEQWLLHLMKDQSGVATSPEKRAHAVVDAPDAAADDGAHI 483 Query 457 -------------NLAPMLATHGTV--AGLKASQWAFEGKWDGYRLLVEADHGAVRLRSR 501 +L PMLAT G V A +WAFE KWDGYR LV V L+SR Sbjct 484 SLSDAVEPRRIAPDLRPMLATAGQVGDGDYPAREWAFEPKWDGYRALVRFSARGVALQSR 543 Query 502 SGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVPSFSQMQNRGRDTR--VEFWAF 559 SGRD T E+ +L + E+LA H VLD E V LD++G PSF +Q RG R + F Sbjct 544 SGRDFTQEFAELAVVPEELAAHAGVLDAEIVALDAAGRPSFHALQERGTGARPAMRLLVF 603 Query 560 DLLYLDGRALLGTRYQDRRKLLETL----ANATSLTVPELLPGDGAQ----------AFA 605 D+L+LDG +L+ RY DRR++L L A+ L E G + A Sbjct 604 DVLHLDGTSLVNKRYSDRRQVLLALPLPAADPDHLGREERDVGGWRRSVTIGTSVRAALR 663 Query 606 CSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRSSGVGSLLM 665 S + EGVIAKR D+RY PGRR +WVK KH EVVIGGWR G+G R+ G+GSLL+ Sbjct 664 ASAEARLEGVIAKRLDARYLPGRRGHAWVKLKHSLDAEVVIGGWRPGQGRRAGGIGSLLL 723 Query 666 GIP-GPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYVKPAL 724 G+P GGL++ G+VGTG ++ L L L P SPF +P +AK +V+P + Sbjct 724 GVPDDDGGLRYVGKVGTGFTDAALDALLATLEPRERTTSPFTTEVPRVEAKVAHWVRPDV 783 Query 725 VAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEV 756 V EV + WT +G LR + WRGLRPDK P+++ Sbjct 784 VGEVTFDSWTDDGVLRAARWRGLRPDKAPADL 815 >gi|269957020|ref|YP_003326809.1| DNA polymerase LigD, polymerase domain-containing protein [Xylanimonas cellulosilytica DSM 15894] gi|269305701|gb|ACZ31251.1| DNA polymerase LigD, polymerase domain protein [Xylanimonas cellulosilytica DSM 15894] Length=858 Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/858 (47%), Positives = 492/858 (58%), Gaps = 117/858 (13%) Query 7 QRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQPAFFEK 66 R+ LTN DKVLYPATGTTK ++ DY A +A V+L H RPATRKRWP+GV+ FF+K Sbjct 12 HRLQLTNLDKVLYPATGTTKGEVIDYLARIAPVLLPHARRRPATRKRWPDGVEGQVFFQK 71 Query 67 QLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAEPGSGEL 126 S P W+ + H++ Y ++D L W+ Q A+LE+HVPQW+ V G+ Sbjct 72 NADRSTPSWVRTHRIQHKTSANDYVLVDDVATLTWLGQTASLELHVPQWQ-VGRTGTHL- 129 Query 127 NPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLYTPLD-- 184 P RLV DLDPGEG + + AEVAR R +L +GL PVTSGSKG+HLY L Sbjct 130 ---PPDRLVLDLDPGEGAGLPECAEVARLARAILQGMGLEPLPVTSGSKGIHLYAALSAG 186 Query 185 ------EPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTI 238 +P S+ T +A +A+ LE P LV S M KSLR GKV VDWSQN+G+KTTI Sbjct 187 SSPEGAKPSSAEQITDVAHELARYLEAEHPDLVVSDMKKSLRGGKVLVDWSQNNGAKTTI 246 Query 239 APYSLRGRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDAD-----APV 293 APYSLRGRT PTVAAPRTWAELDDP LRQLSY+EVL R+ARDGDLL L A P Sbjct 247 APYSLRGRTRPTVAAPRTWAELDDPDLRQLSYEEVLDRVARDGDLLAGLTAGHLSQLEPT 306 Query 294 ADRLTRYRRM------RDASKTPEPIPTAKP--------------------VTGDGN--- 324 L R+ R+ RD ++TPEP TA P TG G+ Sbjct 307 PAHLARFERLATYNAKRDPARTPEPFDTAPPAPVVEPVETTPPVGGVSTGSTTGVGSTIG 366 Query 325 ----------TFVIQEHHARRPHYDFRLECDGVLVSWAVPKNLPDNTSVNHLAIHTEDHP 374 TFVIQEHHARR H+DFRLE DGVLVSWA+PK P + NHLA+ TEDHP Sbjct 367 VGSTTGVGAPTFVIQEHHARRLHWDFRLERDGVLVSWALPKGEPTDPGTNHLAVQTEDHP 426 Query 375 LEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNLHGGRI-SGRYALIR 433 L Y FEG IP+GEYGAG+V IWDSGTY+TEK+ D EVI LH R + R ALIR Sbjct 427 LAYGGFEGTIPNGEYGAGEVTIWDSGTYETEKWRDG---KEVIAVLHSERRGTRRLALIR 483 Query 434 T---NGD-RWLAHRLKNQKDQKVFE--------------------FDNLAPMLATHGTVA 469 T GD +WL HR K Q + V L PMLA+ A Sbjct 484 TGRAEGDNQWLIHRTKAQPAEDVASPAPVVEPVETTTPTRSTAEVAVRLEPMLASAAQPA 543 Query 470 GLKASQ---------WAFEGKWDGYRLLVEADHG-----AVRLRSRSGRDVTAEYPQLRA 515 ++A + W FE KWDGYR L + G A+RL SR+G+D T YP+L Sbjct 544 EVRALEADGESGSHDWVFEMKWDGYRTLAVVEPGPDGTRAIRLTSRTGQDFTRTYPELAP 603 Query 516 LAEDL-ADHHVVLDGEAVVLDSSGVPSFSQMQNRGRDTRVEFWAFDLLYLDGRALLGTRY 574 LA + + VVLD E V LD++G P F ++Q + VE FD+L + R+LL T Y Sbjct 604 LAAQVTGELPVVLDAEIVALDAAGRPDFRRLQQHAGN--VELMVFDVLQVGDRSLLHTPY 661 Query 575 QDRRKLLETLANA-TSLTVPELLPGDGAQAFACSRKHGWEGVIAKRRDSRYQPGRRCASW 633 +RR +L + +A + +P GD A SR+ EGV+AKRR+S YQPGRR W Sbjct 662 DERRTVLADVLDARRPVHLPAAFDGDLTAALETSRRLRLEGVMAKRRESTYQPGRRTRQW 721 Query 634 VKDKHWNTQEVVIGGWRAGEGGRSSG----VGSLLMGIPG-PGGLQFAGRVGTGLSEREL 688 +K KH QEVV+ GWR G + G LL+ +P G L++ GRVGTG S+ E Sbjct 722 LKLKHTAVQEVVVVGWRPLRAGETDEDPRYAGGLLLAVPADDGALRYVGRVGTGFSDAER 781 Query 689 ANLKEMLAPLHTDESPFD-VPLPARDAKGITYVKPALVAEVRYSEWT------PEGRLRQ 741 ++ LA + P D VP P DA +V P LV EV ++EWT PE RLR Sbjct 782 RDVATRLAAVERKTPPLDGVPRP--DAAHTRWVTPRLVGEVEFAEWTGDPTDDPEARLRA 839 Query 742 SSWRGLRPDKKPSEVVRE 759 + WRG RPDK+P++VV E Sbjct 840 ARWRGWRPDKEPADVVVE 857 >gi|148273255|ref|YP_001222816.1| ATP-dependent DNA ligase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831185|emb|CAN02137.1| conserved hypothetical protein/ATP-dependent DNA ligase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length=832 Score = 637 bits (1644), Expect = 2e-180, Method: Compositional matrix adjust. Identities = 379/835 (46%), Positives = 468/835 (57%), Gaps = 91/835 (10%) Query 7 QRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGV---DQPA- 62 R+ LTN DKVLYPATGTTK D+ YYA +A ML H+ RP TRKRW +GV + P Sbjct 6 HRIALTNLDKVLYPATGTTKGDVIAYYAAIAPHMLPHLRDRPVTRKRWVDGVGTDEAPGK 65 Query 63 -FFEKQLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAEP 121 FF+K L P W+ R + HR YP++ L W+ Q AALE+HVPQWRF Sbjct 66 MFFQKDLDAHTPEWVQRRAIQHRDHANDYPLVGDVATLTWLGQIAALELHVPQWRFGRT- 124 Query 122 GSGELNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLYT 181 E P RLV DLDPG G + + EVA+A R +L D+GL +PVTSGSKG+HLY Sbjct 125 -GDERRP---DRLVLDLDPGPGAGLPECVEVAKAARAILRDMGLEPYPVTSGSKGIHLYA 180 Query 182 PLDEPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAPY 241 LD + + +A +A+ LE P LV S M K+LR GKV VDWSQN+ +KTT+APY Sbjct 181 ALDGSHDASRVSEVAHELARALEADHPDLVVSDMKKALREGKVLVDWSQNNPNKTTVAPY 240 Query 242 SLRGRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLL---------------ER 286 SLRGR+ PTVA PRTW EL P L L DEV+ R+ R D L ER Sbjct 241 SLRGRSRPTVAVPRTWRELSSPTLLHLELDEVIARMRRRADPLAPVEEGHRESLEPTRER 300 Query 287 LDADA---------PVADRLTRYRRMRDASKTPEPIPTAKPVTGDGNTFVIQEHHARRPH 337 L A DRL YR RDA+KT EP+P P +G+TFVIQEHHAR H Sbjct 301 LAGFARKEPAADADGADDRLATYRSKRDAAKTSEPVPAESPAPSEGSTFVIQEHHARALH 360 Query 338 YDFRLECDGVLVSWAVPKNLPDNTSVNHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIW 397 +DFRLE DGVLVSWA+PK +P NHLA+ TEDHPLEY +FEG IP+GEYG G+V IW Sbjct 361 WDFRLEHDGVLVSWALPKGVPTEHGTNHLAVQTEDHPLEYGSFEGTIPAGEYGGGEVTIW 420 Query 398 DSGTYDTEKFHDDPHTGEVIVNLHG-GRISG-----RYALIRTNGD-----RWLAH---- 442 D+GT++ EK+ D EVI LHG G +G RYALI T G WL H Sbjct 421 DAGTFELEKWRDGE---EVIATLHGRGDGTGIDGPRRYALIHTGGHGKVDANWLIHLMEP 477 Query 443 ----------------------RLKNQKDQKVFEFDNLAPM-LATHGTVAGLKASQWAFE 479 R + +K APM +WA E Sbjct 478 ADAPATARAKPTRPASLEKAGGRTRVGARRKGGAASAPAPMLATAATAAGLDADEEWAVE 537 Query 480 GKWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGV 539 KWDGYR + G + SR+G D+T +P+L L + L VLDGE VVL G Sbjct 538 MKWDGYRAIAVVADGRATITSRNGVDLTPAFPELADLPDSLDVDAAVLDGEIVVLGDGGH 597 Query 540 PSFSQMQNR------------GRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANA 587 P F +Q R + V FD L + R L+ Y+DRR L + Sbjct 598 PDFGLLQTRLGLTGEKEIARARKAAPVHLMLFDALAIGDRVLVEEPYRDRRAALLDAVRS 657 Query 588 TS---LTVPELLPGDGAQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEV 644 + VP GD A A SR+ G EGV+AKR D+ Y+ GRR ++W+K KH QEV Sbjct 658 PGRGRIQVPPAFDGDLGGALATSRELGLEGVVAKRVDAPYESGRRSSAWIKIKHHRAQEV 717 Query 645 VIGGWRAGEGGRSSGVGSLLMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESP 704 V+GGWR G G R+SG+GSLL+G+PGP GL++AGRVGTG +ER+LA+ PL SP Sbjct 718 VVGGWRPGSGSRASGIGSLLVGVPGPDGLEYAGRVGTGFTERDLADALRRFGPLARKTSP 777 Query 705 FDVPLPARDAKGITYVKPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE 759 F +PA DA+ ++ P LV EV ++EWT GRLRQ+SWRG R DK EVVRE Sbjct 778 F-ADVPAADARDAHWITPRLVGEVEFAEWTSTGRLRQASWRGWRHDKSSDEVVRE 831 >gi|269794626|ref|YP_003314081.1| DNA ligase D/DNA polymerase LigD [Sanguibacter keddieii DSM 10542] gi|269096811|gb|ACZ21247.1| DNA ligase D/DNA polymerase LigD [Sanguibacter keddieii DSM 10542] Length=852 Score = 632 bits (1630), Expect = 8e-179, Method: Compositional matrix adjust. Identities = 396/838 (48%), Positives = 480/838 (58%), Gaps = 95/838 (11%) Query 7 QRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQPAFFEK 66 RVTLTN KV+YP TGTTK+D+ Y A VA+ + H+ GRPATRKRW +G P FF+K Sbjct 23 HRVTLTNLSKVIYPETGTTKADVLAYLAAVAQPFVAHVTGRPATRKRWVHGTGGPVFFQK 82 Query 67 QLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAEPGSGEL 126 L SAP W+ R + H TYP++D L W+ Q AALE+HVPQWRF G + Sbjct 83 NLEDSAPTWVHRRDIQHSDHVNTYPLVDDLATLTWLGQVAALEIHVPQWRF----GRTGV 138 Query 127 NPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLYTPLDEP 186 P RLV DLDPG G + + +VA R++L + L FPVTSGSKG+HLY LD Sbjct 139 EHRP-DRLVLDLDPGPGTGLDECVQVALWAREILTGMDLEPFPVTSGSKGIHLYAALDGA 197 Query 187 VSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAPYSLRGR 246 S + +A +A+ L+ P LV S M KSLR GKV VDWSQN+ +KTTI+PYSLRGR Sbjct 198 HDSDAVSAVAHELARALQADHPDLVVSDMKKSLREGKVLVDWSQNNRNKTTISPYSLRGR 257 Query 247 THPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVA------------ 294 P VAAPR+WAEL+ L L DEV+ R+ RDGDLL L A Sbjct 258 DRPYVAAPRSWAELEAGGLTHLEADEVVARLERDGDLLAPLLTGGHAALEPTTARMAGFE 317 Query 295 --DRLTRYRRMRDASKTPEPIPTAKPVT---GDG---------NTFVIQEHHARRPHYDF 340 DRL YR RDASKTPEP+P A P GDG TFVIQEHHAR HYDF Sbjct 318 RTDRLEVYRSKRDASKTPEPVPEASPTEASPGDGPAGSADPAAPTFVIQEHHARALHYDF 377 Query 341 RLECDGVLVSWAVPKNLPDNTSVNHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSG 400 RLE DGVLVSWA+PK P +T+ N L + TEDHPLEY +FEG IP GEYGAG V IWD G Sbjct 378 RLEHDGVLVSWALPKGEPVDTTHNRLGVQTEDHPLEYGSFEGTIPRGEYGAGTVSIWDRG 437 Query 401 TYDTEKFHDDPHTGEVIVNLH----GG--RISGRYALIRT----NGDRWLAHRLKN---- 446 TYD K+ + EVIV LH GG R S R ALI T G WL HR+K+ Sbjct 438 TYDLHKWREGE---EVIVTLHSDGSGGTDRGSRRIALIHTAHTGGGTSWLVHRMKDDGHS 494 Query 447 ---------QKDQKVFEFDN----------------LAPMLATHGTVAGLKASQWAFEGK 481 ++D K + L PMLAT GTV L WAFE K Sbjct 495 GGGAAGASGEEDDKAEVAGSAPGEGSASSSGSRDRPLTPMLATPGTVDDLDEDDWAFEMK 554 Query 482 WDGYRLL--VEADH----GAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLD 535 WDG R + V AD G+VRL SR+G D+TA YP+L AL+ +A+ VVLDGE V LD Sbjct 555 WDGIRAVATVVADRDGSPGSVRLTSRNGNDLTASYPELAALSGCVAE-DVVLDGEIVALD 613 Query 536 SSGVPSFSQMQNRGRDTR------------VEFWAFDLLYLDGRALLGTRYQDRRKLLET 583 G PSF ++Q+R T V + AFDL+ GR Y RR LE Sbjct 614 QGGRPSFGRLQSRMNLTARRDVAAAQKAQGVVYMAFDLVERSGRRTTRVGYDGRRAALEE 673 Query 584 LANATS-LTVPELLPGDGAQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQ 642 L + + VP D A A A S++ G EG++AKRR S Y+PGR +WVK KH TQ Sbjct 674 LVTESGPVHVPPAFTSDAASALAASKELGLEGIVAKRRSSTYRPGRPAHTWVKVKHVQTQ 733 Query 643 EVVIGGWRAGEGGRSSGVGSLLMGIP-GPGGLQFAGRVGTGLSERELANLKEMLAPLHTD 701 EVV+ GWR G G R+ +GSLL+ +P G L++AGRVGTG ++ L L LA Sbjct 734 EVVVVGWRTGNGARAQTLGSLLVAVPDATGTLRYAGRVGTGFTDATLERLATELARNPRQ 793 Query 702 ESPFDVPLPARDAKGITYVKPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE 759 P D +PA DA +V+ V EV ++ WT +GRLR WRG R DK P +VVRE Sbjct 794 TPPVD-DVPAADAGDAHWVRADRVGEVAHAGWTDQGRLRHPVWRGWRSDKAPGDVVRE 850 >gi|319951272|ref|ZP_08025107.1| ATP-dependent DNA ligase [Dietzia cinnamea P4] gi|319435045|gb|EFV90330.1| ATP-dependent DNA ligase [Dietzia cinnamea P4] Length=864 Score = 622 bits (1604), Expect = 8e-176, Method: Compositional matrix adjust. Identities = 374/868 (44%), Positives = 489/868 (57%), Gaps = 131/868 (15%) Query 9 VTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQPAFFEKQL 68 V T+ DKVLY ATGTTK+D+ +YY VA +++ + RP TRKRWP+G D +FFEK L Sbjct 8 VRFTHPDKVLYEATGTTKADVLEYYTAVAPLLMTYAGNRPVTRKRWPDGTDADSFFEKNL 67 Query 69 ALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAEPGSGELNP 128 AP W+ T+ H S T TYP++DS LAW AQQAALE+HVPQW +GE P Sbjct 68 PQHAPDWVPSVTIEHSSRTVTYPVLDSPATLAWFAQQAALELHVPQWTLT----NGE--P 121 Query 129 GPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLYTPLDEPVS 188 G R+V DLDPGE V + A+VA VRDLL++ GL +FPVTSGSKG+HLY LD+ V+ Sbjct 122 GRTRRIVIDLDPGESVELDTTAKVALRVRDLLSEAGLESFPVTSGSKGIHLYARLDKAVT 181 Query 189 SRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAPYSLRGRTH 248 + A+ +AK +AQ L + P LVT+TM +S+R GKVFVDWSQNSG+KTT+APYSLRGR Sbjct 182 AASASKVAKEIAQSLAKQTPDLVTATMKRSIRDGKVFVDWSQNSGAKTTVAPYSLRGRAE 241 Query 249 PTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAP---------------- 292 P VAAPR+W EL D L L +DEVL R+ DGDLL+ L+ A Sbjct 242 PWVAAPRSWEELGDGGLTHLHWDEVLKRLDADGDLLDGLEGTAKKGGSAKEKASSSGSAS 301 Query 293 --VADRLTRYRRMRDASKTPEPIPT---------AKPVTGD------------------- 322 + A + PEP T A+P +GD Sbjct 302 RAKKSSGGKKSSSSSADEDPEPADTSSTDVEGCDAEPTSGDAVVTSLEEYRRKRDRRKTP 361 Query 323 ---------------GNTFVIQEHHARRPHYDFRLECDGVLVSWAVPKNLPDNTSVNHLA 367 G FVIQEHHARR HYD RLE GVL SWAVPKNLP LA Sbjct 362 EPFEGEVETDRSGGDGPIFVIQEHHARRLHYDLRLEHHGVLASWAVPKNLPTEPKDRRLA 421 Query 368 IHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNLHGGRISG 427 ++TEDHPL Y TFEG IP GEYGAG + IWD G Y+ EK+ +D E+IV L G ++SG Sbjct 422 VNTEDHPLGYETFEGTIPKGEYGAGHMTIWDRGWYECEKWRED----EIIVWLDGEKVSG 477 Query 428 RYALIRTNGDR--WLAHRLKNQKDQKVF------------------------EFDNLA-- 459 RY L+RT+ ++ W+ +K+Q + FD Sbjct 478 RYVLVRTSAEKNQWIVQYMKDQSPDSFYGGRDNPKSSYPDDDTRARGSGGSRRFDGAGDK 537 Query 460 --------------------PMLATHGTVAGLKASQWAFEGKWDGYRLLVEADHGAVRLR 499 PM+ T V L WAFEGKWDGYR+ + D RL Sbjct 538 ARSRSTDRTDSAARPDAPPLPMIPTAAEVTELPDDTWAFEGKWDGYRVTLATDGAQTRLV 597 Query 500 SRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVPSFSQMQNR----GRDTR-- 553 SR+G + LAE L + VLD E V+LD++GVP F+ + + G+D+ Sbjct 598 SRNGNSMDWLADGFPGLAEAL-ERRAVLDAELVILDANGVPDFASLAKQAAAEGKDSSLP 656 Query 554 -VEFWAFDLLYLDGRALLGTRYQDRRKLLETLANAT----SLTVPELLPGDGAQAFACSR 608 VE + FD+L +DG L ++ RR++L+ LA A + VPE+L G G +A A + Sbjct 657 PVELFVFDVLEVDGVDLQKQAWERRREVLDLLAPAVREVDRVHVPEVLDGPGDRALAEAE 716 Query 609 KHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRSSGVGSLLMGIP 668 ++GWEG++AKRRDS+Y+ GRR +W+K K T E V+GGWR G+GGRS +GSLL+G+P Sbjct 717 EYGWEGIVAKRRDSKYESGRRSKAWLKQKLLTTTEAVVGGWRPGKGGRSGSLGSLLLGLP 776 Query 669 GPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYVKPALVAEV 728 GL + GRVGTG ++++ L L PL SPF LPA + +V P +V EV Sbjct 777 AETGLAYIGRVGTGFTDKQARALLAELEPLRRKTSPFVEQLPADARRDAVWVTPKIVVEV 836 Query 729 RYSEWTPEGRLRQSSWRGLRPDKKPSEV 756 R+ +T +G +RQ SWR +R DK P ++ Sbjct 837 RHQGFTDDGNMRQPSWRDIRRDKLPGDL 864 >gi|90108455|pdb|1VS0|A Chain A, Crystal Structure Of The Ligase Domain From M. Tuberculosis Ligd At 2.4a gi|90108456|pdb|1VS0|B Chain B, Crystal Structure Of The Ligase Domain From M. Tuberculosis Ligd At 2.4a Length=310 Score = 615 bits (1585), Expect = 1e-173, Method: Compositional matrix adjust. Identities = 303/308 (99%), Positives = 303/308 (99%), Gaps = 0/308 (0%) Query 452 VFEFDNLAPMLATHGTVAGLKASQWAFEGKWDGYRLLVEADHGAVRLRSRSGRDVTAEYP 511 VFEFDNLAP LATHGTVAGLKASQWAFEG WDGYRLLVEADHGAVRLRSRSGRDVTAEYP Sbjct 3 VFEFDNLAPXLATHGTVAGLKASQWAFEGXWDGYRLLVEADHGAVRLRSRSGRDVTAEYP 62 Query 512 QLRALAEDLADHHVVLDGEAVVLDSSGVPSFSQMQNRGRDTRVEFWAFDLLYLDGRALLG 571 QLRALAEDLADHHVVLDGEAVVLDSSGVPSFSQ QNRGRDTRVEFWAFDLLYLDGRALLG Sbjct 63 QLRALAEDLADHHVVLDGEAVVLDSSGVPSFSQXQNRGRDTRVEFWAFDLLYLDGRALLG 122 Query 572 TRYQDRRKLLETLANATSLTVPELLPGDGAQAFACSRKHGWEGVIAKRRDSRYQPGRRCA 631 TRYQDRRKLLETLANATSLTVPELLPGDGAQAFACSRKHGWEGVIAKRRDSRYQPGRRCA Sbjct 123 TRYQDRRKLLETLANATSLTVPELLPGDGAQAFACSRKHGWEGVIAKRRDSRYQPGRRCA 182 Query 632 SWVKDKHWNTQEVVIGGWRAGEGGRSSGVGSLLMGIPGPGGLQFAGRVGTGLSERELANL 691 SWVKDKHWNTQEVVIGGWRAGEGGRSSGVGSLL GIPGPGGLQFAGRVGTGLSERELANL Sbjct 183 SWVKDKHWNTQEVVIGGWRAGEGGRSSGVGSLLXGIPGPGGLQFAGRVGTGLSERELANL 242 Query 692 KEMLAPLHTDESPFDVPLPARDAKGITYVKPALVAEVRYSEWTPEGRLRQSSWRGLRPDK 751 KE LAPLHTDESPFDVPLPARDAKGITYVKPALVAEVRYSEWTPEGRLRQSSWRGLRPDK Sbjct 243 KEXLAPLHTDESPFDVPLPARDAKGITYVKPALVAEVRYSEWTPEGRLRQSSWRGLRPDK 302 Query 752 KPSEVVRE 759 KPSEVVRE Sbjct 303 KPSEVVRE 310 Lambda K H 0.317 0.134 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1812158987964 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40