BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0941c
Length=257
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608081|ref|NP_215456.1| hypothetical protein Rv0941c [Mycob... 503 8e-141
gi|340625950|ref|YP_004744402.1| hypothetical protein MCAN_09411... 502 2e-140
gi|289761075|ref|ZP_06520453.1| conserved hypothetical protein [... 501 4e-140
gi|306806786|ref|ZP_07443454.1| hypothetical protein TMGG_03007 ... 501 4e-140
gi|339293949|gb|AEJ46060.1| hypothetical protein CCDC5079_0870 [... 499 2e-139
gi|183984536|ref|YP_001852827.1| hypothetical protein MMAR_4567 ... 375 3e-102
gi|118619552|ref|YP_907884.1| hypothetical protein MUL_4427 [Myc... 374 7e-102
gi|240173279|ref|ZP_04751937.1| hypothetical protein MkanA1_2846... 348 3e-94
gi|296169697|ref|ZP_06851315.1| stas domain protein [Mycobacteri... 318 4e-85
gi|254819349|ref|ZP_05224350.1| hypothetical protein MintA_05458... 292 3e-77
gi|342860548|ref|ZP_08717199.1| hypothetical protein MCOL_16776 ... 292 4e-77
gi|41406983|ref|NP_959819.1| hypothetical protein MAP0885c [Myco... 291 6e-77
gi|254773943|ref|ZP_05215459.1| hypothetical protein MaviaA2_046... 287 8e-76
gi|118462473|ref|YP_880317.1| stas domain-containing protein [My... 277 9e-73
gi|118473452|ref|YP_889787.1| stas domain-containing protein [My... 206 2e-51
gi|240173155|ref|ZP_04751813.1| hypothetical protein MkanA1_2783... 206 3e-51
gi|333991717|ref|YP_004524331.1| hypothetical protein JDM601_307... 201 7e-50
gi|296169156|ref|ZP_06850811.1| stas domain protein [Mycobacteri... 199 2e-49
gi|120404185|ref|YP_954014.1| anti-sigma-factor antagonist [Myco... 198 7e-49
gi|41409332|ref|NP_962168.1| hypothetical protein MAP3234c [Myco... 195 6e-48
gi|342861088|ref|ZP_08717737.1| hypothetical protein MCOL_19492 ... 187 1e-45
gi|118465250|ref|YP_883219.1| stas domain-containing protein [My... 182 5e-44
gi|145224035|ref|YP_001134713.1| anti-sigma-factor antagonist [M... 181 8e-44
gi|254823083|ref|ZP_05228084.1| hypothetical protein MintA_24355... 160 2e-37
gi|262204129|ref|YP_003275337.1| sulfate transporter/antisigma-f... 101 8e-20
gi|300785485|ref|YP_003765776.1| hypothetical protein AMED_3589 ... 94.4 2e-17
gi|300785163|ref|YP_003765454.1| anti-anti-sigma factor [Amycola... 93.6 2e-17
gi|54026352|ref|YP_120594.1| hypothetical protein nfa43810 [Noca... 92.4 6e-17
gi|256375952|ref|YP_003099612.1| signal transduction histidine k... 89.4 4e-16
gi|302867343|ref|YP_003835980.1| ATP-binding region ATPase domai... 84.3 2e-14
gi|300786020|ref|YP_003766311.1| hypothetical protein AMED_4132 ... 83.2 4e-14
gi|238064465|ref|ZP_04609174.1| hypothetical protein MCAG_05431 ... 80.9 2e-13
gi|238060901|ref|ZP_04605610.1| stas domain-containing protein [... 75.9 6e-12
gi|330468591|ref|YP_004406334.1| ATP-binding region ATPase domai... 73.6 3e-11
gi|300785484|ref|YP_003765775.1| hypothetical protein AMED_3588 ... 73.2 4e-11
gi|300788349|ref|YP_003768640.1| hypothetical protein AMED_6507 ... 72.4 6e-11
gi|291452862|ref|ZP_06592252.1| conserved hypothetical protein [... 64.7 1e-08
gi|315503808|ref|YP_004082695.1| ATP-binding region ATPase domai... 64.3 2e-08
gi|284033261|ref|YP_003383192.1| protein serine phosphatase with... 63.2 3e-08
gi|297203318|ref|ZP_06920715.1| regulatory protein [Streptomyces... 62.0 8e-08
gi|302869710|ref|YP_003838347.1| ATP-binding region ATPase domai... 61.2 2e-07
gi|302543646|ref|ZP_07295988.1| conserved hypothetical protein [... 59.7 4e-07
gi|300787037|ref|YP_003767328.1| two-component system histidine ... 59.3 5e-07
gi|119715499|ref|YP_922464.1| response regulator receiver [Nocar... 59.3 6e-07
gi|29826736|ref|NP_821370.1| hypothetical protein SAV_196 [Strep... 58.5 8e-07
gi|295838615|ref|ZP_06825548.1| serine phosphatase [Streptomyces... 58.5 9e-07
gi|289767420|ref|ZP_06526798.1| integral membrane sensor protein... 58.5 1e-06
gi|21225438|ref|NP_631217.1| hypothetical protein SCO7158 [Strep... 58.2 1e-06
gi|152964316|ref|YP_001360100.1| anti-sigma regulatory factor, s... 58.2 1e-06
gi|297159117|gb|ADI08829.1| regulatory protein [Streptomyces bin... 57.8 1e-06
>gi|15608081|ref|NP_215456.1| hypothetical protein Rv0941c [Mycobacterium tuberculosis H37Rv]
gi|15840364|ref|NP_335401.1| hypothetical protein MT0968 [Mycobacterium tuberculosis CDC1551]
gi|31792130|ref|NP_854623.1| hypothetical protein Mb0966c [Mycobacterium bovis AF2122/97]
70 more sequence titles
Length=257
Score = 503 bits (1296), Expect = 8e-141, Method: Compositional matrix adjust.
Identities = 256/257 (99%), Positives = 257/257 (100%), Gaps = 0/257 (0%)
Query 1 VVAVSTAAKSPTALAIAVRTQDSVVILTADGALDSSSSALLRDSLTRATLEQPSAVIVNV 60
+VAVSTAAKSPTALAIAVRTQDSVVILTADGALDSSSSALLRDSLTRATLEQPSAVIVNV
Sbjct 1 MVAVSTAAKSPTALAIAVRTQDSVVILTADGALDSSSSALLRDSLTRATLEQPSAVIVNV 60
Query 61 TELQVAEESAWSVFISARWQADFRADVPVLLVCGHRAGRAAVTRTGVARFMPVYPTEKAA 120
TELQVAEESAWSVFISARWQADFRADVPVLLVCGHRAGRAAVTRTGVARFMPVYPTEKAA
Sbjct 61 TELQVAEESAWSVFISARWQADFRADVPVLLVCGHRAGRAAVTRTGVARFMPVYPTEKAA 120
Query 121 SKAIGRLARRNFKRSDAQLPANLNSLRESRQLVREWLTQWSRPGLIPVALVVVNVFVENV 180
SKAIGRLARRNFKRSDAQLPANLNSLRESRQLVREWLTQWSRPGLIPVALVVVNVFVENV
Sbjct 121 SKAIGRLARRNFKRSDAQLPANLNSLRESRQLVREWLTQWSRPGLIPVALVVVNVFVENV 180
Query 181 LKHTGSDPVMRIESDGPTATIAVSDGSSAPAVRLASPPKGIDVSGLAIVAALSRAWGSSP 240
LKHTGSDPVMRIESDGPTATIAVSDGSSAPAVRLASPPKGIDVSGLAIVAALSRAWGSSP
Sbjct 181 LKHTGSDPVMRIESDGPTATIAVSDGSSAPAVRLASPPKGIDVSGLAIVAALSRAWGSSP 240
Query 241 TSSGKTVWAIIGPENQL 257
TSSGKTVWAIIGPENQL
Sbjct 241 TSSGKTVWAIIGPENQL 257
>gi|340625950|ref|YP_004744402.1| hypothetical protein MCAN_09411 [Mycobacterium canettii CIPT
140010059]
gi|340004140|emb|CCC43278.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=257
Score = 502 bits (1293), Expect = 2e-140, Method: Compositional matrix adjust.
Identities = 255/257 (99%), Positives = 257/257 (100%), Gaps = 0/257 (0%)
Query 1 VVAVSTAAKSPTALAIAVRTQDSVVILTADGALDSSSSALLRDSLTRATLEQPSAVIVNV 60
+VAVSTAAKSPTALAIAVRTQDSVVILTADGALDSSSSALLRDSLTRATLEQPSAVIVNV
Sbjct 1 MVAVSTAAKSPTALAIAVRTQDSVVILTADGALDSSSSALLRDSLTRATLEQPSAVIVNV 60
Query 61 TELQVAEESAWSVFISARWQADFRADVPVLLVCGHRAGRAAVTRTGVARFMPVYPTEKAA 120
TELQVAEESAWSVFISARWQA+FRADVPVLLVCGHRAGRAAVTRTGVARFMPVYPTEKAA
Sbjct 61 TELQVAEESAWSVFISARWQAEFRADVPVLLVCGHRAGRAAVTRTGVARFMPVYPTEKAA 120
Query 121 SKAIGRLARRNFKRSDAQLPANLNSLRESRQLVREWLTQWSRPGLIPVALVVVNVFVENV 180
SKAIGRLARRNFKRSDAQLPANLNSLRESRQLVREWLTQWSRPGLIPVALVVVNVFVENV
Sbjct 121 SKAIGRLARRNFKRSDAQLPANLNSLRESRQLVREWLTQWSRPGLIPVALVVVNVFVENV 180
Query 181 LKHTGSDPVMRIESDGPTATIAVSDGSSAPAVRLASPPKGIDVSGLAIVAALSRAWGSSP 240
LKHTGSDPVMRIESDGPTATIAVSDGSSAPAVRLASPPKGIDVSGLAIVAALSRAWGSSP
Sbjct 181 LKHTGSDPVMRIESDGPTATIAVSDGSSAPAVRLASPPKGIDVSGLAIVAALSRAWGSSP 240
Query 241 TSSGKTVWAIIGPENQL 257
TSSGKTVWAIIGPENQL
Sbjct 241 TSSGKTVWAIIGPENQL 257
>gi|289761075|ref|ZP_06520453.1| conserved hypothetical protein [Mycobacterium tuberculosis GM
1503]
gi|289708581|gb|EFD72597.1| conserved hypothetical protein [Mycobacterium tuberculosis GM
1503]
Length=257
Score = 501 bits (1290), Expect = 4e-140, Method: Compositional matrix adjust.
Identities = 255/257 (99%), Positives = 256/257 (99%), Gaps = 0/257 (0%)
Query 1 VVAVSTAAKSPTALAIAVRTQDSVVILTADGALDSSSSALLRDSLTRATLEQPSAVIVNV 60
+VAVSTAAKSPTALAIAVRTQDSVVILTADGALDSSSSALLRDSL RATLEQPSAVIVNV
Sbjct 1 MVAVSTAAKSPTALAIAVRTQDSVVILTADGALDSSSSALLRDSLARATLEQPSAVIVNV 60
Query 61 TELQVAEESAWSVFISARWQADFRADVPVLLVCGHRAGRAAVTRTGVARFMPVYPTEKAA 120
TELQVAEESAWSVFISARWQADFRADVPVLLVCGHRAGRAAVTRTGVARFMPVYPTEKAA
Sbjct 61 TELQVAEESAWSVFISARWQADFRADVPVLLVCGHRAGRAAVTRTGVARFMPVYPTEKAA 120
Query 121 SKAIGRLARRNFKRSDAQLPANLNSLRESRQLVREWLTQWSRPGLIPVALVVVNVFVENV 180
SKAIGRLARRNFKRSDAQLPANLNSLRESRQLVREWLTQWSRPGLIPVALVVVNVFVENV
Sbjct 121 SKAIGRLARRNFKRSDAQLPANLNSLRESRQLVREWLTQWSRPGLIPVALVVVNVFVENV 180
Query 181 LKHTGSDPVMRIESDGPTATIAVSDGSSAPAVRLASPPKGIDVSGLAIVAALSRAWGSSP 240
LKHTGSDPVMRIESDGPTATIAVSDGSSAPAVRLASPPKGIDVSGLAIVAALSRAWGSSP
Sbjct 181 LKHTGSDPVMRIESDGPTATIAVSDGSSAPAVRLASPPKGIDVSGLAIVAALSRAWGSSP 240
Query 241 TSSGKTVWAIIGPENQL 257
TSSGKTVWAIIGPENQL
Sbjct 241 TSSGKTVWAIIGPENQL 257
>gi|306806786|ref|ZP_07443454.1| hypothetical protein TMGG_03007 [Mycobacterium tuberculosis SUMu007]
gi|306966985|ref|ZP_07479646.1| hypothetical protein TMIG_03497 [Mycobacterium tuberculosis SUMu009]
gi|308346798|gb|EFP35649.1| hypothetical protein TMGG_03007 [Mycobacterium tuberculosis SUMu007]
gi|308355375|gb|EFP44226.1| hypothetical protein TMIG_03497 [Mycobacterium tuberculosis SUMu009]
Length=257
Score = 501 bits (1290), Expect = 4e-140, Method: Compositional matrix adjust.
Identities = 255/257 (99%), Positives = 256/257 (99%), Gaps = 0/257 (0%)
Query 1 VVAVSTAAKSPTALAIAVRTQDSVVILTADGALDSSSSALLRDSLTRATLEQPSAVIVNV 60
+VAVSTAAKSPTALAIAVRTQDSVVILTADGALDSSSSALLRDSLTRATLEQPSAVIVNV
Sbjct 1 MVAVSTAAKSPTALAIAVRTQDSVVILTADGALDSSSSALLRDSLTRATLEQPSAVIVNV 60
Query 61 TELQVAEESAWSVFISARWQADFRADVPVLLVCGHRAGRAAVTRTGVARFMPVYPTEKAA 120
TELQVAEESAWSVFISARWQADFRADVPVLLVCGHRAGRAAVTRTGVARFMPVYPTEKAA
Sbjct 61 TELQVAEESAWSVFISARWQADFRADVPVLLVCGHRAGRAAVTRTGVARFMPVYPTEKAA 120
Query 121 SKAIGRLARRNFKRSDAQLPANLNSLRESRQLVREWLTQWSRPGLIPVALVVVNVFVENV 180
SKAIGRLARRNFKRSDAQLPANLNSLRESRQLVREWLTQWSRPGLIPVALVVVNVFVENV
Sbjct 121 SKAIGRLARRNFKRSDAQLPANLNSLRESRQLVREWLTQWSRPGLIPVALVVVNVFVENV 180
Query 181 LKHTGSDPVMRIESDGPTATIAVSDGSSAPAVRLASPPKGIDVSGLAIVAALSRAWGSSP 240
L HTGSDPVMRIESDGPTATIAVSDGSSAPAVRLASPPKGIDVSGLAIVAALSRAWGSSP
Sbjct 181 LTHTGSDPVMRIESDGPTATIAVSDGSSAPAVRLASPPKGIDVSGLAIVAALSRAWGSSP 240
Query 241 TSSGKTVWAIIGPENQL 257
TSSGKTVWAIIGPENQL
Sbjct 241 TSSGKTVWAIIGPENQL 257
>gi|339293949|gb|AEJ46060.1| hypothetical protein CCDC5079_0870 [Mycobacterium tuberculosis
CCDC5079]
gi|339297588|gb|AEJ49698.1| hypothetical protein CCDC5180_0861 [Mycobacterium tuberculosis
CCDC5180]
Length=254
Score = 499 bits (1285), Expect = 2e-139, Method: Compositional matrix adjust.
Identities = 253/254 (99%), Positives = 254/254 (100%), Gaps = 0/254 (0%)
Query 4 VSTAAKSPTALAIAVRTQDSVVILTADGALDSSSSALLRDSLTRATLEQPSAVIVNVTEL 63
+STAAKSPTALAIAVRTQDSVVILTADGALDSSSSALLRDSLTRATLEQPSAVIVNVTEL
Sbjct 1 MSTAAKSPTALAIAVRTQDSVVILTADGALDSSSSALLRDSLTRATLEQPSAVIVNVTEL 60
Query 64 QVAEESAWSVFISARWQADFRADVPVLLVCGHRAGRAAVTRTGVARFMPVYPTEKAASKA 123
QVAEESAWSVFISARWQADFRADVPVLLVCGHRAGRAAVTRTGVARFMPVYPTEKAASKA
Sbjct 61 QVAEESAWSVFISARWQADFRADVPVLLVCGHRAGRAAVTRTGVARFMPVYPTEKAASKA 120
Query 124 IGRLARRNFKRSDAQLPANLNSLRESRQLVREWLTQWSRPGLIPVALVVVNVFVENVLKH 183
IGRLARRNFKRSDAQLPANLNSLRESRQLVREWLTQWSRPGLIPVALVVVNVFVENVLKH
Sbjct 121 IGRLARRNFKRSDAQLPANLNSLRESRQLVREWLTQWSRPGLIPVALVVVNVFVENVLKH 180
Query 184 TGSDPVMRIESDGPTATIAVSDGSSAPAVRLASPPKGIDVSGLAIVAALSRAWGSSPTSS 243
TGSDPVMRIESDGPTATIAVSDGSSAPAVRLASPPKGIDVSGLAIVAALSRAWGSSPTSS
Sbjct 181 TGSDPVMRIESDGPTATIAVSDGSSAPAVRLASPPKGIDVSGLAIVAALSRAWGSSPTSS 240
Query 244 GKTVWAIIGPENQL 257
GKTVWAIIGPENQL
Sbjct 241 GKTVWAIIGPENQL 254
>gi|183984536|ref|YP_001852827.1| hypothetical protein MMAR_4567 [Mycobacterium marinum M]
gi|183177862|gb|ACC42972.1| conserved hypothetical membrane protein [Mycobacterium marinum
M]
Length=254
Score = 375 bits (963), Expect = 3e-102, Method: Compositional matrix adjust.
Identities = 176/254 (70%), Positives = 218/254 (86%), Gaps = 0/254 (0%)
Query 4 VSTAAKSPTALAIAVRTQDSVVILTADGALDSSSSALLRDSLTRATLEQPSAVIVNVTEL 63
++ AKSP ALAI R++DS+V+L+ +GA+DS++ A LRD++ +ATL++PSAV+VNV+ L
Sbjct 1 MNATAKSPNALAIDTRSEDSLVVLSVEGAIDSTNCAALRDAIIKATLDEPSAVVVNVSAL 60
Query 64 QVAEESAWSVFISARWQADFRADVPVLLVCGHRAGRAAVTRTGVARFMPVYPTEKAASKA 123
QV +E++WS+F+SARWQ D VP+LLVC RAGR +TRTGV RFMPVYPTEK A KA
Sbjct 61 QVPDEASWSIFVSARWQVDTPQHVPILLVCASRAGRELITRTGVTRFMPVYPTEKGAIKA 120
Query 124 IGRLARRNFKRSDAQLPANLNSLRESRQLVREWLTQWSRPGLIPVALVVVNVFVENVLKH 183
+GRLARR + + QLPANL SLRESR+LVREWLT WS+PGLIPVALV+VNVFVENVL+H
Sbjct 121 VGRLARRKVRYAQVQLPANLGSLRESRKLVREWLTSWSKPGLIPVALVIVNVFVENVLEH 180
Query 184 TGSDPVMRIESDGPTATIAVSDGSSAPAVRLASPPKGIDVSGLAIVAALSRAWGSSPTSS 243
TGSDPV++++ DG ATIAVSDGS+APA+RL +PPKGIDVSGLAIV AL RAWGS+PT++
Sbjct 181 TGSDPVIKVQCDGTAATIAVSDGSNAPAIRLQTPPKGIDVSGLAIVEALCRAWGSTPTAT 240
Query 244 GKTVWAIIGPENQL 257
GKTVWAIIGPENQL
Sbjct 241 GKTVWAIIGPENQL 254
>gi|118619552|ref|YP_907884.1| hypothetical protein MUL_4427 [Mycobacterium ulcerans Agy99]
gi|118571662|gb|ABL06413.1| conserved hypothetical membrane protein [Mycobacterium ulcerans
Agy99]
Length=254
Score = 374 bits (960), Expect = 7e-102, Method: Compositional matrix adjust.
Identities = 176/254 (70%), Positives = 218/254 (86%), Gaps = 0/254 (0%)
Query 4 VSTAAKSPTALAIAVRTQDSVVILTADGALDSSSSALLRDSLTRATLEQPSAVIVNVTEL 63
++ AKSP ALAI R++DS+V+L+ +GA+DS++ A LRD++ +ATL++PSAV+VNV+ L
Sbjct 1 MNATAKSPNALAIDTRSEDSLVVLSVEGAIDSTNCAALRDAIIKATLDEPSAVVVNVSAL 60
Query 64 QVAEESAWSVFISARWQADFRADVPVLLVCGHRAGRAAVTRTGVARFMPVYPTEKAASKA 123
QV +E++WS+F+SARWQ D VP+LLVC RAGR +TRTGV RFMPVYPTEK A KA
Sbjct 61 QVPDEASWSIFVSARWQVDTPQHVPILLVCASRAGRELITRTGVTRFMPVYPTEKRAIKA 120
Query 124 IGRLARRNFKRSDAQLPANLNSLRESRQLVREWLTQWSRPGLIPVALVVVNVFVENVLKH 183
+GRLARR + + QLPANL SLRESR+LVREWLT WS+PGLIPVALV+VNVFVENVL+H
Sbjct 121 VGRLARRKVRYAQVQLPANLGSLRESRKLVREWLTSWSKPGLIPVALVIVNVFVENVLEH 180
Query 184 TGSDPVMRIESDGPTATIAVSDGSSAPAVRLASPPKGIDVSGLAIVAALSRAWGSSPTSS 243
TGSDPV++++ DG ATIAVSDGS+APA+RL +PPKGIDVSGLAIV AL RAWGS+PT++
Sbjct 181 TGSDPVIKVQCDGTAATIAVSDGSNAPAIRLQTPPKGIDVSGLAIVEALCRAWGSTPTAT 240
Query 244 GKTVWAIIGPENQL 257
GKTVWAIIGPENQL
Sbjct 241 GKTVWAIIGPENQL 254
>gi|240173279|ref|ZP_04751937.1| hypothetical protein MkanA1_28461 [Mycobacterium kansasii ATCC
12478]
Length=253
Score = 348 bits (894), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 187/254 (74%), Positives = 220/254 (87%), Gaps = 1/254 (0%)
Query 4 VSTAAKSPTALAIAVRTQDSVVILTADGALDSSSSALLRDSLTRATLEQPSAVIVNVTEL 63
+S AKS T+LA+A R + S V+L +G L +++SA LRDS+ +ATL++P+AVIVNVT L
Sbjct 1 MSAVAKS-TSLAVATRLEQSAVMLAVEGVLGAANSAALRDSIMKATLDEPTAVIVNVTGL 59
Query 64 QVAEESAWSVFISARWQADFRADVPVLLVCGHRAGRAAVTRTGVARFMPVYPTEKAASKA 123
QV +++AWS FI ARWQAD R +VP++LVC RAGR AVTR+GVA FMPVYPTEK A KA
Sbjct 60 QVPDDAAWSAFIGARWQADTRPNVPIVLVCASRAGRDAVTRSGVAAFMPVYPTEKGAIKA 119
Query 124 IGRLARRNFKRSDAQLPANLNSLRESRQLVREWLTQWSRPGLIPVALVVVNVFVENVLKH 183
+GRLARRN + + AQLPA+LNSLRESRQLVREWLT WS+PGLIPVALVVVNVFVENVLKH
Sbjct 120 VGRLARRNVRHAQAQLPAHLNSLRESRQLVREWLTSWSKPGLIPVALVVVNVFVENVLKH 179
Query 184 TGSDPVMRIESDGPTATIAVSDGSSAPAVRLASPPKGIDVSGLAIVAALSRAWGSSPTSS 243
T S+P++R+ SDGPTATIAVSDGS+APA+RL SPPKGIDVSGLAIV AL RAWGS+PTSS
Sbjct 180 TSSEPMVRVFSDGPTATIAVSDGSTAPAIRLKSPPKGIDVSGLAIVDALCRAWGSTPTSS 239
Query 244 GKTVWAIIGPENQL 257
GKTVWAIIGPENQL
Sbjct 240 GKTVWAIIGPENQL 253
>gi|296169697|ref|ZP_06851315.1| stas domain protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295895694|gb|EFG75390.1| stas domain protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=255
Score = 318 bits (815), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 175/254 (69%), Positives = 206/254 (82%), Gaps = 0/254 (0%)
Query 4 VSTAAKSPTALAIAVRTQDSVVILTADGALDSSSSALLRDSLTRATLEQPSAVIVNVTEL 63
VS+ A+SP +LA+A RT SV ILT DG LDSS+SA LRD + +ATL++P+AVIVN++ L
Sbjct 2 VSSVAESPGSLAVATRTDQSVAILTVDGVLDSSNSAALRDHMLQATLDEPAAVIVNISAL 61
Query 64 QVAEESAWSVFISARWQADFRADVPVLLVCGHRAGRAAVTRTGVARFMPVYPTEKAASKA 123
+V E AWS FI A WQ + +VP++LVC HRA R A+TR+GVA FMPVY TEKAA KA
Sbjct 62 KVLAELAWSTFIGAHWQVRSKPNVPIVLVCAHRATREAITRSGVAYFMPVYSTEKAAMKA 121
Query 124 IGRLARRNFKRSDAQLPANLNSLRESRQLVREWLTQWSRPGLIPVALVVVNVFVENVLKH 183
+ + +RR +R+DA LPA+L SLRESR+LVREWLT WS+ LIPVALVVVNVFVENVL+H
Sbjct 122 LSQQSRRAVRRADAPLPADLTSLRESRRLVREWLTAWSQSALIPVALVVVNVFVENVLEH 181
Query 184 TGSDPVMRIESDGPTATIAVSDGSSAPAVRLASPPKGIDVSGLAIVAALSRAWGSSPTSS 243
T S PVMRIES G TATIAVSD S APA+RL SP GIDVSGLAIV ALSRAWGS+PTS
Sbjct 182 TASVPVMRIESHGATATIAVSDSSHAPALRLPSPANGIDVSGLAIVEALSRAWGSTPTSD 241
Query 244 GKTVWAIIGPENQL 257
GKTVWA+IGPENQL
Sbjct 242 GKTVWAVIGPENQL 255
>gi|254819349|ref|ZP_05224350.1| hypothetical protein MintA_05458 [Mycobacterium intracellulare
ATCC 13950]
Length=254
Score = 292 bits (748), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 160/254 (63%), Positives = 200/254 (79%), Gaps = 0/254 (0%)
Query 4 VSTAAKSPTALAIAVRTQDSVVILTADGALDSSSSALLRDSLTRATLEQPSAVIVNVTEL 63
+S A+S ++LA+A RT DS+ +LT DG LD+++S LRD L +AT + SAVI++V+ L
Sbjct 1 MSPVAESASSLAVATRTDDSIAVLTVDGVLDAANSTALRDRLIKATSDAASAVILDVSGL 60
Query 64 QVAEESAWSVFISARWQADFRADVPVLLVCGHRAGRAAVTRTGVARFMPVYPTEKAASKA 123
++ E AWS F+ A WQ A VP++ VC +RA R A+TR+G+A FMPVY ++KAA K+
Sbjct 61 KLNAEPAWSTFMGAYWQIGSAAHVPIVFVCSNRATREAITRSGIAHFMPVYSSQKAAMKS 120
Query 124 IGRLARRNFKRSDAQLPANLNSLRESRQLVREWLTQWSRPGLIPVALVVVNVFVENVLKH 183
+G+ RR +R+DAQLPA+L SLRESR+LVREWLT WS+ LIPVALVVVNVFVENVL+H
Sbjct 121 LGQNGRRAVRRADAQLPADLTSLRESRRLVREWLTTWSQAKLIPVALVVVNVFVENVLEH 180
Query 184 TGSDPVMRIESDGPTATIAVSDGSSAPAVRLASPPKGIDVSGLAIVAALSRAWGSSPTSS 243
T PVMR+E+ G TATIAVSD S+ PAVRL SP KGIDVSGLAIV ALSR WGS+PT S
Sbjct 181 TAGVPVMRLEAQGTTATIAVSDASNTPAVRLPSPAKGIDVSGLAIVDALSRTWGSTPTGS 240
Query 244 GKTVWAIIGPENQL 257
GKTVWA+IGPENQL
Sbjct 241 GKTVWAVIGPENQL 254
>gi|342860548|ref|ZP_08717199.1| hypothetical protein MCOL_16776 [Mycobacterium colombiense CECT
3035]
gi|342132203|gb|EGT85444.1| hypothetical protein MCOL_16776 [Mycobacterium colombiense CECT
3035]
Length=247
Score = 292 bits (747), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 159/244 (66%), Positives = 197/244 (81%), Gaps = 0/244 (0%)
Query 14 LAIAVRTQDSVVILTADGALDSSSSALLRDSLTRATLEQPSAVIVNVTELQVAEESAWSV 73
+A+A+RT DS+ +LT DG LD++ S LR+ + +ATL+ +AVIVNV+ L V ESAW+
Sbjct 4 VAVAMRTDDSIAVLTVDGELDAAHSTALRERILKATLDDAAAVIVNVSGLTVHTESAWTA 63
Query 74 FISARWQADFRADVPVLLVCGHRAGRAAVTRTGVARFMPVYPTEKAASKAIGRLARRNFK 133
F+ A WQA +P++LVC ++A R A+T++GVA FMPVY +EKAA KA+G+ +RR +
Sbjct 64 FMGAYWQAGSAPHIPIVLVCTNKATREAITKSGVAHFMPVYASEKAALKALGQNSRRPVR 123
Query 134 RSDAQLPANLNSLRESRQLVREWLTQWSRPGLIPVALVVVNVFVENVLKHTGSDPVMRIE 193
R+D QLPA+L SLRESR+LVREWLT WS+ LIPVALVVVNVFVENVL+HT S P +RIE
Sbjct 124 RADVQLPADLTSLRESRRLVREWLTTWSQSKLIPVALVVVNVFVENVLEHTASVPAVRIE 183
Query 194 SDGPTATIAVSDGSSAPAVRLASPPKGIDVSGLAIVAALSRAWGSSPTSSGKTVWAIIGP 253
+ G TATIAVSD S+ PAVRL SP KGIDVSGLAIV ALSRAWGS+PTSSGKTVWA+IGP
Sbjct 184 AQGTTATIAVSDASNTPAVRLPSPKKGIDVSGLAIVDALSRAWGSTPTSSGKTVWAVIGP 243
Query 254 ENQL 257
ENQL
Sbjct 244 ENQL 247
>gi|41406983|ref|NP_959819.1| hypothetical protein MAP0885c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41395334|gb|AAS03202.1| hypothetical protein MAP_0885c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336461441|gb|EGO40312.1| STAS domain-containing protein [Mycobacterium avium subsp. paratuberculosis
S397]
Length=254
Score = 291 bits (745), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 160/254 (63%), Positives = 199/254 (79%), Gaps = 0/254 (0%)
Query 4 VSTAAKSPTALAIAVRTQDSVVILTADGALDSSSSALLRDSLTRATLEQPSAVIVNVTEL 63
+S A+S +LA++ RT D+ +LT DG LD +SS LLRD + +ATL+Q AV+++V+ L
Sbjct 1 MSRVAESAGSLAVSTRTDDAATVLTVDGVLDPASSTLLRDRIIKATLDQTRAVVIDVSAL 60
Query 64 QVAEESAWSVFISARWQADFRADVPVLLVCGHRAGRAAVTRTGVARFMPVYPTEKAASKA 123
+V ES WS F++ WQ VP++LVC +A R A+ R+G+ FMPVY ++KAA KA
Sbjct 61 KVNAESTWSTFMATYWQLGNTPHVPLVLVCAKKAAREAIARSGITHFMPVYSSQKAALKA 120
Query 124 IGRLARRNFKRSDAQLPANLNSLRESRQLVREWLTQWSRPGLIPVALVVVNVFVENVLKH 183
+G +RR +R+DAQLPA+L SLRESR+LVREWLT WS+ LIPVALVVVNVFVENVL+H
Sbjct 121 LGPNSRRIVRRADAQLPADLTSLRESRRLVREWLTTWSQSKLIPVALVVVNVFVENVLEH 180
Query 184 TGSDPVMRIESDGPTATIAVSDGSSAPAVRLASPPKGIDVSGLAIVAALSRAWGSSPTSS 243
T S PVMR+E+ G TATIAVSD S+ PAVRL SP KGIDVSGLAIV ALSRAWGS+PT+S
Sbjct 181 TASVPVMRVEAQGTTATIAVSDASNTPAVRLPSPVKGIDVSGLAIVDALSRAWGSTPTAS 240
Query 244 GKTVWAIIGPENQL 257
GKTVWAIIGPENQL
Sbjct 241 GKTVWAIIGPENQL 254
>gi|254773943|ref|ZP_05215459.1| hypothetical protein MaviaA2_04614 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=244
Score = 287 bits (735), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 156/244 (64%), Positives = 193/244 (80%), Gaps = 0/244 (0%)
Query 14 LAIAVRTQDSVVILTADGALDSSSSALLRDSLTRATLEQPSAVIVNVTELQVAEESAWSV 73
+A++ RT D+ +LT DG LD +SS LLRD + +ATL+Q AV+++V+ L+V ES WS
Sbjct 1 MAVSTRTDDAATVLTVDGVLDPASSTLLRDRIIKATLDQTPAVVIDVSALKVNAESTWST 60
Query 74 FISARWQADFRADVPVLLVCGHRAGRAAVTRTGVARFMPVYPTEKAASKAIGRLARRNFK 133
F++ WQ VP++LVC +A R A+ R+G+ FMPVY ++KAA KA+G +RR +
Sbjct 61 FMATYWQLGNTPHVPLVLVCAKKAAREAIARSGITHFMPVYSSQKAALKALGPNSRRIVR 120
Query 134 RSDAQLPANLNSLRESRQLVREWLTQWSRPGLIPVALVVVNVFVENVLKHTGSDPVMRIE 193
R+DAQLPA+L SLRESR+LVREWLT WS+ LIPVALVVVNVFVENVL+HT S PVMR+E
Sbjct 121 RADAQLPADLTSLRESRRLVREWLTTWSQSKLIPVALVVVNVFVENVLEHTASVPVMRVE 180
Query 194 SDGPTATIAVSDGSSAPAVRLASPPKGIDVSGLAIVAALSRAWGSSPTSSGKTVWAIIGP 253
+ G TATIAVSD S+ PAVRL SP KGIDVSGLAIV ALSRAWGS+PT+SGKTVWAIIGP
Sbjct 181 AQGTTATIAVSDASNTPAVRLPSPVKGIDVSGLAIVDALSRAWGSTPTASGKTVWAIIGP 240
Query 254 ENQL 257
ENQL
Sbjct 241 ENQL 244
>gi|118462473|ref|YP_880317.1| stas domain-containing protein [Mycobacterium avium 104]
gi|118163760|gb|ABK64657.1| stas domain protein [Mycobacterium avium 104]
Length=232
Score = 277 bits (709), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 152/232 (66%), Positives = 185/232 (80%), Gaps = 0/232 (0%)
Query 26 ILTADGALDSSSSALLRDSLTRATLEQPSAVIVNVTELQVAEESAWSVFISARWQADFRA 85
+LT DG LD +SS LLRD + +ATL+Q AV+++V+ L+V ES WS F++ WQ
Sbjct 1 MLTVDGVLDPASSTLLRDRIIKATLDQTPAVVIDVSALKVNAESTWSTFMATYWQLGNTP 60
Query 86 DVPVLLVCGHRAGRAAVTRTGVARFMPVYPTEKAASKAIGRLARRNFKRSDAQLPANLNS 145
VP++LVC +A R A+ R+G+ FMPVY ++KAA KA+G +RR +R+DAQLPA+L S
Sbjct 61 HVPLVLVCAKKAAREAIARSGITHFMPVYSSQKAALKALGPNSRRIVRRADAQLPADLTS 120
Query 146 LRESRQLVREWLTQWSRPGLIPVALVVVNVFVENVLKHTGSDPVMRIESDGPTATIAVSD 205
LRESR+LVREWLT WS+ LIPVALVVVNVFVENVL+HT S PVMR+E+ G TATIAVSD
Sbjct 121 LRESRRLVREWLTTWSQSKLIPVALVVVNVFVENVLEHTASVPVMRVEAQGTTATIAVSD 180
Query 206 GSSAPAVRLASPPKGIDVSGLAIVAALSRAWGSSPTSSGKTVWAIIGPENQL 257
S+ PAVRL SP KGIDVSGLAIV ALSRAWGS+PT+SGKTVWAIIGPENQL
Sbjct 181 ASNTPAVRLPSPVKGIDVSGLAIVDALSRAWGSTPTASGKTVWAIIGPENQL 232
>gi|118473452|ref|YP_889787.1| stas domain-containing protein [Mycobacterium smegmatis str.
MC2 155]
gi|118174739|gb|ABK75635.1| stas domain protein [Mycobacterium smegmatis str. MC2 155]
Length=253
Score = 206 bits (525), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 121/254 (48%), Positives = 170/254 (67%), Gaps = 8/254 (3%)
Query 6 TAAKSPTALAIAVRTQDSVVILTADGALDSSSSALLRDSLTRATLEQPSAVIVNVTELQV 65
T ++SP + I+V ++ + +LT DG LDS++ +RD++ +A L +P AV+VNV+ L V
Sbjct 2 TRSRSP--ITISVTSRGEITLLTVDGVLDSTTYREVRDTVIKAALSEPRAVVVNVSRLVV 59
Query 66 AEESAWSVFISARWQADFRADVPVLLVCGHRAGRAAVTRTGVARFMPVYPTEKAASKAIG 125
E+AWSVF SARW DVPVLLVC H+ GRA++ R G+ R++PV T A +
Sbjct 60 PTETAWSVFTSARWHVCVWPDVPVLLVCDHQQGRASLWRNGIQRYVPVCSTLDEACATV- 118
Query 126 RLARRNF---KRSDAQLPANLNSLRESRQLVREWLTQWSRPGLIPVALVVVNVFVENVLK 182
LA R +R+ A LPA +S+R SR+LV +WL WS IPV VV + VENVL+
Sbjct 119 -LADRMSPLRRRARAHLPAVHSSVRRSRELVTDWLLNWSLTKYIPVTCVVTDALVENVLE 177
Query 183 HTGSDPVMRIESDGPTATIAVSDGSSAPAVRLASPPKGID-VSGLAIVAALSRAWGSSPT 241
HT S P + +E+ G T +IAV D S APAVR P +G +SGLA+VA+++R+WG +PT
Sbjct 178 HTLSAPKIMLENRGDTVSIAVEDESPAPAVRHEDPYRGGGRLSGLALVASIARSWGCTPT 237
Query 242 SSGKTVWAIIGPEN 255
++GKTVWA+IGPE+
Sbjct 238 TTGKTVWALIGPES 251
>gi|240173155|ref|ZP_04751813.1| hypothetical protein MkanA1_27831 [Mycobacterium kansasii ATCC
12478]
Length=252
Score = 206 bits (523), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 118/241 (49%), Positives = 153/241 (64%), Gaps = 1/241 (0%)
Query 16 IAVRTQDSVVILTADGALDSSSSALLRDSLTRATLEQPSAVIVNVTELQVAEESAWSVFI 75
+ V D V+L +G LDS + LRD++ +A LE+P AVIV+ L V SAWSVF
Sbjct 10 VDVEHLDDAVVLVLEGVLDSLTYRELRDAVIKAALEEPRAVIVDANRLSVPSASAWSVFT 69
Query 76 SARWQADFRADVPVLLVCGHRAGRAAVTRTGVARFMPVYPTEKAASKAIGRLARRNFKRS 135
SARW DVP+LL C R +T GVAR++P +PT ++A +A+ ++ +RS
Sbjct 70 SARWHVSSWPDVPILLACQDPRTRRVITSVGVARYVPAHPTRESALRAVAAVSLHGRRRS 129
Query 136 DAQLPANLNSLRESRQLVREWLTQWSRPGLIPVALVVVNVFVENVLKHTGSDPVMRIESD 195
AQLPA S+R +R L++ WLT W+R L A V V VENVL HT S PV+ +E+
Sbjct 130 RAQLPATAVSVRVARSLIQAWLTAWARSDLAAAAATVATVLVENVLAHTDSAPVLVLENY 189
Query 196 GPTATIAVSDGSSAPAVRLASPPKGIDV-SGLAIVAALSRAWGSSPTSSGKTVWAIIGPE 254
T T+AV D S PAVR +G ++ SGLAIVAAL RAWGS PTSSGKTVWA++GPE
Sbjct 190 RDTVTVAVEDNSHRPAVRHEDAGRGAEMLSGLAIVAALCRAWGSMPTSSGKTVWALVGPE 249
Query 255 N 255
N
Sbjct 250 N 250
>gi|333991717|ref|YP_004524331.1| hypothetical protein JDM601_3077 [Mycobacterium sp. JDM601]
gi|333487685|gb|AEF37077.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=237
Score = 201 bits (512), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 113/234 (49%), Positives = 151/234 (65%), Gaps = 2/234 (0%)
Query 25 VILTADGALDSSSSALLRDSLTRATLEQPSAVIVNVTELQVAEESAWSVFISARWQADFR 84
+L A G LDSS+ LRDS+ +A L++P AV+V+V L V SAWSVF SARW
Sbjct 5 CLLRALGRLDSSTYLELRDSVIKAALDEPQAVMVDVGGLDVPAPSAWSVFASARWHVSTW 64
Query 85 ADVPVLLVCGHRAGRAAVTRTGVARFMPVYPTEKAASKAIGRLARRNFKRSDAQLPANLN 144
D+P+LL+C ++ TGV R++PV+ ++A ++ A+R +R +LP L+
Sbjct 65 PDIPILLICPRPEITDQISGTGVTRYVPVHADVESALVSL-VAAKRPRRRVRIELPRRLS 123
Query 145 SLRESRQLVREWLTQWSRPGLIPVALVVVNVFVENVLKHTGSDPVMRIESDGPTATIAVS 204
SLR R V EWLT WS+ LIP A V+V+V VENVL+HT S PV+ +E+ T TIAV
Sbjct 124 SLRGGRDFVAEWLTNWSQEQLIPTAKVIVDVLVENVLRHTESPPVILLENADSTVTIAVQ 183
Query 205 DGSSAPAVRLASPPKG-IDVSGLAIVAALSRAWGSSPTSSGKTVWAIIGPENQL 257
D +PA+R + G SGLA+V AL RAWGSSPT GKTVWA++GPEN+L
Sbjct 184 DADGSPAMRREAGAGGAYRTSGLAVVGALCRAWGSSPTPGGKTVWAVVGPENRL 237
>gi|296169156|ref|ZP_06850811.1| stas domain protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295896172|gb|EFG75837.1| stas domain protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=252
Score = 199 bits (507), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 110/246 (45%), Positives = 154/246 (63%), Gaps = 1/246 (0%)
Query 13 ALAIAVRTQDSVVILTADGALDSSSSALLRDSLTRATLEQPSAVIVNVTELQVAEESAWS 72
A+ + Q V IL DG LDSS+ LRD++ +A L++P AVIV+V L V +AW+
Sbjct 7 AIRVDTHAQRDVPILVVDGLLDSSTYRGLRDTMIKAALDEPPAVIVDVDRLTVPTGTAWT 66
Query 73 VFISARWQADFRADVPVLLVCGHRAGRAAVTRTGVARFMPVYPTEKAASKAIGRLARRNF 132
VF SARW DVP+LLVC R A+ GVAR++PV+P+ +AA A+G +
Sbjct 67 VFTSARWHVSVWPDVPILLVCSAPRVRRAIIAAGVARYVPVHPSREAALDAVGNRSIEAR 126
Query 133 KRSDAQLPANLNSLRESRQLVREWLTQWSRPGLIPVALVVVNVFVENVLKHTGSDPVMRI 192
+R+ +LP + ++ +R + +WLT+W +IP+A V VFVENVL HT S P + +
Sbjct 127 RRARTELPRSPGTVTLARAAITDWLTEWDNRDVIPIAATVATVFVENVLDHTESAPALIV 186
Query 193 ESDGPTATIAVSDGSSAPAVRLASPPKGID-VSGLAIVAALSRAWGSSPTSSGKTVWAII 251
ES T+AV D S+ R +G + VSGLAIV+AL RAWG++PTSSGKTVWA++
Sbjct 187 ESYRDDVTVAVEDCSNRLPGRHEDAARGAEIVSGLAIVSALCRAWGATPTSSGKTVWALV 246
Query 252 GPENQL 257
G EN+
Sbjct 247 GRENRF 252
>gi|120404185|ref|YP_954014.1| anti-sigma-factor antagonist [Mycobacterium vanbaalenii PYR-1]
gi|119957003|gb|ABM14008.1| anti-sigma-factor antagonist [Mycobacterium vanbaalenii PYR-1]
Length=281
Score = 198 bits (503), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 108/242 (45%), Positives = 155/242 (65%), Gaps = 2/242 (0%)
Query 17 AVRTQDSVVILTADGALDSSSSALLRDSLTRATLEQPSAVIVNVTELQVAEESAWSVFIS 76
A R+ D +L G LDS + +R+S+ +A L++P AV+V+V++L V SAW+ F S
Sbjct 41 ASRSLDGCAMLVLSGTLDSWTYREVRNSVIKAALDEPKAVVVDVSDLHVPASSAWTAFTS 100
Query 77 ARWQADFRADVPVLLVCGHRAGRAAVTRTGVARFMPVYPTEKAASKAIGRLARRNFKRSD 136
ARW DVP++LVC RAA+ R+G +R++PV+P E +A+ +IG R +R+
Sbjct 101 ARWHVSTWPDVPIVLVCAQEERRAAIQRSGASRWVPVHPDEASAAASIGE-PHRLRRRAR 159
Query 137 AQLPANLNSLRESRQLVREWLTQWSRPGLIPVALVVVNVFVENVLKHTGSDPVMRIESDG 196
+L A+ +SL +R LV WLT+W+ P LI A V V +ENVL+HT S P++ +E+
Sbjct 160 DELAADRSSLTRARGLVARWLTEWACPDLILAASTVATVLIENVLEHTSSRPILVLEAFD 219
Query 197 PTATIAVSDGSSAPAVRLASPPKGID-VSGLAIVAALSRAWGSSPTSSGKTVWAIIGPEN 255
T+AVSD PA S G VSGLAIVA LSR+WGS PT++GKTVW ++GPE+
Sbjct 220 GCVTVAVSDQCPTPAALHESSGSGAHTVSGLAIVATLSRSWGSIPTANGKTVWTVLGPES 279
Query 256 QL 257
+L
Sbjct 280 RL 281
>gi|41409332|ref|NP_962168.1| hypothetical protein MAP3234c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|254776490|ref|ZP_05218006.1| hypothetical protein MaviaA2_17724 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|41398152|gb|AAS05782.1| hypothetical protein MAP_3234c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336459310|gb|EGO38253.1| hypothetical protein MAPs_04090 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=252
Score = 195 bits (495), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 111/247 (45%), Positives = 156/247 (64%), Gaps = 1/247 (0%)
Query 12 TALAIAVRTQDSVVILTADGALDSSSSALLRDSLTRATLEQPSAVIVNVTELQVAEESAW 71
+A+ IA V +LT DG LDSS+ +RD++ +A +++P AV+V+V ++ SAW
Sbjct 6 SAVQIASEQDRDVPVLTVDGVLDSSTYRTVRDTVIKAAIDEPRAVVVDVDRVRAPSASAW 65
Query 72 SVFISARWQADFRADVPVLLVCGHRAGRAAVTRTGVARFMPVYPTEKAASKAIGRLARRN 131
+VF SARW DVP+LLVC H R +T GV R++PV+PT + A +A+ +
Sbjct 66 TVFTSARWHVSIWPDVPILLVCAHPQTRREITTAGVTRYVPVHPTRELAVRAVHGRTLQV 125
Query 132 FKRSDAQLPANLNSLRESRQLVREWLTQWSRPGLIPVALVVVNVFVENVLKHTGSDPVMR 191
+R+ +LP + SL +R ++ +WLTQW +IPVA V VFVENVL HT S PV+
Sbjct 126 RRRARTELPRSDTSLHLARAVLTDWLTQWDIREVIPVAATVATVFVENVLDHTESAPVLI 185
Query 192 IESDGPTATIAVSDGSSAPAVRLASPPKGID-VSGLAIVAALSRAWGSSPTSSGKTVWAI 250
+ES T T+AV D S A R +G D VSGLAIV+AL R WG++PTSSGKTVW
Sbjct 186 VESHRDTVTVAVEDNSFALPGRHEDADRGADIVSGLAIVSALCRVWGATPTSSGKTVWGS 245
Query 251 IGPENQL 257
+G E+++
Sbjct 246 VGREDRI 252
>gi|342861088|ref|ZP_08717737.1| hypothetical protein MCOL_19492 [Mycobacterium colombiense CECT
3035]
gi|342131532|gb|EGT84802.1| hypothetical protein MCOL_19492 [Mycobacterium colombiense CECT
3035]
Length=253
Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 106/246 (44%), Positives = 148/246 (61%), Gaps = 1/246 (0%)
Query 13 ALAIAVRTQDSVVILTADGALDSSSSALLRDSLTRATLEQPSAVIVNVTELQVAEESAWS 72
A+ I + LT +G LDSS+ +RD++ +A +++P AVIV++ L SAW+
Sbjct 8 AVRIHPESHQDAATLTVEGVLDSSTYRTVRDAVIKAAIDEPRAVIVDINRLHAPSASAWT 67
Query 73 VFISARWQADFRADVPVLLVCGHRAGRAAVTRTGVARFMPVYPTEKAASKAIGRLARRNF 132
VF SARW DVP+LL C + + + GV R++P+Y T + A A+ R A
Sbjct 68 VFTSARWHVSVWPDVPILLACADPRVQRELAKAGVTRYVPIYATLELALDAVRRRALSVR 127
Query 133 KRSDAQLPANLNSLRESRQLVREWLTQWSRPGLIPVALVVVNVFVENVLKHTGSDPVMRI 192
+R+ +L N++SL +R ++ +WLT+W P IP A V VFVENVL HT S P + +
Sbjct 128 RRARTELARNISSLDTARSVIADWLTRWGVPDAIPTAATVATVFVENVLDHTESAPALIV 187
Query 193 ESDGPTATIAVSDGSSAPAVRLASPPKGID-VSGLAIVAALSRAWGSSPTSSGKTVWAII 251
ES + +AV DG+S R +G D VSGLAIVAAL RAWG++PTSSGKTVW +
Sbjct 188 ESYQDSVAVAVEDGNSHLPGRHEDADRGADLVSGLAIVAALCRAWGATPTSSGKTVWGSV 247
Query 252 GPENQL 257
G E QL
Sbjct 248 GRETQL 253
>gi|118465250|ref|YP_883219.1| stas domain-containing protein [Mycobacterium avium 104]
gi|118166537|gb|ABK67434.1| stas domain protein [Mycobacterium avium 104]
Length=252
Score = 182 bits (462), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 112/247 (46%), Positives = 157/247 (64%), Gaps = 1/247 (0%)
Query 12 TALAIAVRTQDSVVILTADGALDSSSSALLRDSLTRATLEQPSAVIVNVTELQVAEESAW 71
+A+ IA V +LT DG LDSS+ +RD++ +A +++P AV+V+V ++ SAW
Sbjct 6 SAVQIASEQDRDVPVLTVDGVLDSSTYRTVRDTVIKAAIDEPRAVVVDVDRVRAPSASAW 65
Query 72 SVFISARWQADFRADVPVLLVCGHRAGRAAVTRTGVARFMPVYPTEKAASKAIGRLARRN 131
+VF SARW DVP+LLVC H R +T GV R++PV+PT + A +A+ +
Sbjct 66 TVFTSARWHVSIWPDVPILLVCAHPQTRREITTAGVTRYVPVHPTRELAVRAVHGRTLQV 125
Query 132 FKRSDAQLPANLNSLRESRQLVREWLTQWSRPGLIPVALVVVNVFVENVLKHTGSDPVMR 191
+R+ +LP + SL +R ++ +WLTQW +IPVA VV VFVENVL HT S PV+
Sbjct 126 RRRARTELPRSDTSLHLARAVLTDWLTQWDIREVIPVAATVVTVFVENVLDHTESAPVLI 185
Query 192 IESDGPTATIAVSDGSSAPAVRLASPPKGID-VSGLAIVAALSRAWGSSPTSSGKTVWAI 250
+ES T T+AV D S A R +G D VSGLAIV+AL R WG++PTSSGKTVW
Sbjct 186 VESHRDTVTVAVEDNSFALPGRHEDADRGADIVSGLAIVSALCRVWGATPTSSGKTVWGS 245
Query 251 IGPENQL 257
+G E+++
Sbjct 246 VGREDRI 252
>gi|145224035|ref|YP_001134713.1| anti-sigma-factor antagonist [Mycobacterium gilvum PYR-GCK]
gi|145216521|gb|ABP45925.1| anti-sigma-factor antagonist [Mycobacterium gilvum PYR-GCK]
Length=245
Score = 181 bits (459), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 102/234 (44%), Positives = 141/234 (61%), Gaps = 6/234 (2%)
Query 27 LTADGALDSSSSALLRDSLTRATLEQPSAVIVNVTELQVAEESAWSVFISARWQADFRAD 86
LT G LD S+ +RDS+ +A LE+P AVIV+V+ L+V ESAW SA W
Sbjct 15 LTITGTLDGSTYHEVRDSIIKAALEEPDAVIVDVSGLEVPSESAWKAITSAHWHVRRWPH 74
Query 87 VPVLLVCGHRAGRAAVTRTGVARFMPVYPTEKAASKAIG--RLARRNFKRSDAQLPANLN 144
VP+LLVC A RAA+TR+GV R + ++P +A++ + RR R+D +L A +
Sbjct 75 VPILLVCDEPARRAAITRSGVTRHVRLHPDHTSAARCVAAPTWMRR---RADVELDAGAD 131
Query 145 SLRESRQLVREWLTQWSRPGLIPVALVVVNVFVENVLKHTGSDPVMRIESDGPTATIAVS 204
L+ R+++ L++W RP + A V V VENVL+HT S P + +E+ G +AVS
Sbjct 132 CLQVMREVLARRLSEWGRPDMTLAASTVATVLVENVLEHTESRPTLIVETAGDFVAVAVS 191
Query 205 DGSSAPAVRLASPPKGID-VSGLAIVAALSRAWGSSPTSSGKTVWAIIGPENQL 257
D + P R P G VS LAIV ALS AWG +PT++GKTVWA++ PENQ
Sbjct 192 DENRIPPARREDPGTGAHTVSDLAIVTALSHAWGCTPTTTGKTVWALLAPENQF 245
>gi|254823083|ref|ZP_05228084.1| hypothetical protein MintA_24355 [Mycobacterium intracellulare
ATCC 13950]
Length=227
Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 100/226 (45%), Positives = 141/226 (63%), Gaps = 1/226 (0%)
Query 33 LDSSSSALLRDSLTRATLEQPSAVIVNVTELQVAEESAWSVFISARWQADFRADVPVLLV 92
LDS+S +R+S+ +++P AVIV++ L+ + SAW+VF SARW DVP+LLV
Sbjct 2 LDSASYLTIRNSVIATAIDEPHAVIVDIDRLRASSASAWTVFNSARWHVSVWPDVPILLV 61
Query 93 CGHRAGRAAVTRTGVARFMPVYPTEKAASKAIGRLARRNFKRSDAQLPANLNSLRESRQL 152
CG R A+ GVAR++PV+ T K A +A+ +R+ +L + S+ +R L
Sbjct 62 CGQLTVRRAIATAGVARYVPVHSTRKLALEAVRDQTFTVRRRARTELARSSGSIDHARGL 121
Query 153 VREWLTQWSRPGLIPVALVVVNVFVENVLKHTGSDPVMRIESDGPTATIAVSDGS-SAPA 211
V + LT+W ++ A V VFVEN L HT S PV+ +E+ T T+AV D S P
Sbjct 122 VTDRLTKWDIREVVAAAATVATVFVENALDHTESAPVLIVENYRGTVTVAVEDDSPRLPR 181
Query 212 VRLASPPKGIDVSGLAIVAALSRAWGSSPTSSGKTVWAIIGPENQL 257
R A + VSGLAIV+A+SRAWG++PTSSGKTVWA++G EN+L
Sbjct 182 RREAVDRRAEVVSGLAIVSAVSRAWGAAPTSSGKTVWALVGRENRL 227
>gi|262204129|ref|YP_003275337.1| sulfate transporter/antisigma-factor antagonist STAS [Gordonia
bronchialis DSM 43247]
gi|262087476|gb|ACY23444.1| Sulfate transporter/antisigma-factor antagonist STAS [Gordonia
bronchialis DSM 43247]
Length=256
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 76/238 (32%), Positives = 118/238 (50%), Gaps = 8/238 (3%)
Query 21 QDSVVILTADGALDSSSSALLRDSLTRATLEQPSAVIVNVTELQVAEESAWSVFISARWQ 80
V +L G L+S++ +R+++ E AV+V+ ++ A +SAW+ SA W
Sbjct 13 HHGVTVLHIVGQLNSATYLTIRNAIAATATETTGAVVVDARSMRAASDSAWTALSSAAWL 72
Query 81 ADFRADVPVLLVCGHRAGRAAVTRTGVARFMPVYPTEKAASKAI--GRLARRNFKRSDAQ 138
DVPV +V A R + GV R + VY A ++ + R R+
Sbjct 73 VRDWPDVPVTVVAD-DAARHQLDTVGVTRHIAVYDDLATALDSVRAENMPVRVTHRARHV 131
Query 139 LPANL-NSLRESRQLVREWLTQWSRPGLIPVALVVVNVFVENVLKHTGSDPVMRIESDGP 197
+P + + +R V L W RP + +A +V V V NV++HT DPV+R+E P
Sbjct 132 VPRGIAMPIGAARHFVASTLRDWRRPRYVELARMVTTVLVSNVIEHTRDDPVVRVELHTP 191
Query 198 TATIAVSDGSSAPAVRLASPPKGIDV---SGLAIVAALSRAWGSSPTSSGKTVWAIIG 252
A + V+ G P + + + V SGLA++ +LS WG +PT SGKTVWA+ G
Sbjct 192 -ARLVVAVGDHDPHLPAVTEDRHGHVPIASGLALLTSLSHHWGCTPTGSGKTVWAVAG 248
>gi|300785485|ref|YP_003765776.1| hypothetical protein AMED_3589 [Amycolatopsis mediterranei U32]
gi|299794999|gb|ADJ45374.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
gi|340526930|gb|AEK42135.1| hypothetical protein RAM_18245 [Amycolatopsis mediterranei S699]
Length=250
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/237 (32%), Positives = 116/237 (49%), Gaps = 14/237 (5%)
Query 26 ILTADGALDSSSSALLRDSLTRATLEQPSAVIVNVTELQVAEESAWSVF-ISARWQADFR 84
++T G LD S LRD L + + P +I +V L+++E S +VF + AR ++
Sbjct 21 LVTVTGELDLSGYGFLRDGLLKVAADGPPGLIADVDGLRISELSPAAVFPLVARRIGNWP 80
Query 85 ADVPVLLVCGHRAGRAAVTRTGVARFMPVYPTEKAASKA----IGRLARRNFKRSDAQLP 140
+P L+ R+G+ RF+ V+ +AA + I R A R F R+D
Sbjct 81 G-IPFSLITRRPDHLDTFHRSGIDRFVAVHTDVEAAERQQTIPIRRWALRGFPRTD---- 135
Query 141 ANLNSLRESRQLVREWLTQWSRPGLIPVALVVVNVFVENVLKHTGSDPVMRIESDGPTAT 200
N+ + +R +RE + W P L+ ++V V N L+HT S P +R++ T
Sbjct 136 ---NATKLARAFLREIMASWDVPKLVYDGTLIVGELVGNALQHTTSAPEVRLDLRRDLLT 192
Query 201 IAVSDGSSAPAVRLASPPKGIDVSGLAIVAALSRAWGSSPT-SSGKTVWAIIGPENQ 256
I+V+D S PA L GL I+A ++AWGSS S GK VWA + ++
Sbjct 193 ISVADDSPRPATLLERTDLRDPGLGLRIIAQTAQAWGSSRRWSGGKVVWATLTSDHH 249
>gi|300785163|ref|YP_003765454.1| anti-anti-sigma factor [Amycolatopsis mediterranei U32]
gi|299794677|gb|ADJ45052.1| anti-anti-sigma factor [Amycolatopsis mediterranei U32]
gi|340526603|gb|AEK41808.1| anti-anti-sigma factor [Amycolatopsis mediterranei S699]
Length=241
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/226 (34%), Positives = 111/226 (50%), Gaps = 16/226 (7%)
Query 31 GALDSSSSALLRDSLTRATLEQPSAVIVNVTELQVAEESAWSVFISARWQADFRADVPVL 90
G LD ++ LRD L + V+++V L++ + + VF + VP
Sbjct 24 GVLDRTTYPELRDRLLEFGADSEDGVLIDVERLELRDRALIRVFTLVALRVGEWPAVPFA 83
Query 91 LVCGHRAGRAAVTRTGVARFMPVYPTEKAASKAIGRLARRNFKRSDAQLPANLNSLRESR 150
LV G RAA+ TGV PVY A A+ R ARR R + P + +R
Sbjct 84 LVTGRPEQRAALAATGV----PVYADTATAEAALTRPARRQVGRLLDRSP---RTSARAR 136
Query 151 QLVREWLTQWSRPGLIPVALVVVNVFVENVLKHTGSDPVMRIESDGPTATIAVSDGSSAP 210
VR +W P L A ++ VEN L+HT S P +R+E T ++AVSD S P
Sbjct 137 GFVRGICAEWMVPELAEDAELIATELVENTLRHTDSAPRLRLELRRGTLSVAVSDESGRP 196
Query 211 AVRLASPPKGIDVS----GLAIVAALSRAWGSSPT-SSGKTVWAII 251
AV +G+D++ GL +V +++ WGSS + S GKTVWA++
Sbjct 197 AV----LREGLDLARAGLGLRMVTKVAKRWGSSRSRSGGKTVWALL 238
>gi|54026352|ref|YP_120594.1| hypothetical protein nfa43810 [Nocardia farcinica IFM 10152]
gi|54017860|dbj|BAD59230.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=264
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 75/225 (34%), Positives = 112/225 (50%), Gaps = 4/225 (1%)
Query 26 ILTADGALDSSSSALLRDSLTRATLEQPSAVIVNVTELQVAEESAWSVFISARWQADFRA 85
+L G LD S D L + +E+P A+IV + +L + S + F +AR +
Sbjct 29 VLRPAGVLDVESYRRFGDDLVKFAVEEPRALIVALDDLVLGGSSMLTAFSAARARVREWP 88
Query 86 DVPVLLVCGHRAGRAAVTRTGVARFMPVYPTEKAASKAIGRLARRNFKRSDAQLPANLNS 145
VP+LLV A R AV R + + +PV + AA++A+ +R+ +R L ++ S
Sbjct 89 GVPILLVVAEEADRRAV-RAALPQTVPVVGSVPAAAQAVDPPSRQRSER--LALYPDIAS 145
Query 146 LRESRQLVREWLTQWSRPGLIPVALVVVNVFVENVLKHTGSDPVMRIESDGPTATIAVSD 205
+R+ +RE W A +VV VEN L H D +R+E T+AV+D
Sbjct 146 PGRARRFLRELCRAWGVEHAEADAELVVTELVENALVHGRGDLDLRVELRPDALTVAVAD 205
Query 206 GSSAPAVRLASPPKGIDVSGLAIVAALSRAWGSSPT-SSGKTVWA 249
AV +PP + GL VAA++RAWG +P SGK VWA
Sbjct 206 ADPHAAVLREAPPGRMRRHGLHAVAAIARAWGCAPRWPSGKVVWA 250
>gi|256375952|ref|YP_003099612.1| signal transduction histidine kinase [Actinosynnema mirum DSM
43827]
gi|255920255|gb|ACU35766.1| putative signal transduction histidine kinase [Actinosynnema
mirum DSM 43827]
Length=244
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 77/235 (33%), Positives = 115/235 (49%), Gaps = 6/235 (2%)
Query 22 DSVVILTADGALDSSSSALLRDSLTRATLEQPSAVIVNVTE-LQVAEESAWSVFISARWQ 80
D ++ +G LD S+ LRD L + + PSAV+V + + + A + SVF + +
Sbjct 11 DGATVVRPEGRLDLSTYVPLRDGLLKCAVTGPSAVVVLLGDGFEFATPALMSVFSTVWTR 70
Query 81 ADFRADVPVLLVCGHRAGRAAVTRTGVARFMPVYPTEKAASKAIGRLARRNFKRSDAQLP 140
V ++LV RAA+ G RF+P YPT A +A+ + A+ +R +A LP
Sbjct 71 VAEWPGVRIMLVGESDPHRAALAGGGAGRFVPHYPTLADALEAVEQPAQP--RRDEALLP 128
Query 141 ANLNSLRESRQLVREWLTQWSRPGLIPVALVVVNVFVENVLKHTGSDPVMRIESDGPTAT 200
+RQ VRE +W I A++V VEN L+HT S P +R+E G
Sbjct 129 DTPVGALIARQFVRETCERWDLGDRIEDAVLVATELVENALEHTRSAPSLRLELRGGRLV 188
Query 201 IAVSDG--SSAPAVRLASPPKGIDVSGLAIVAALSRAWGSSP-TSSGKTVWAIIG 252
+AV DG + A G+ +V ++SR WG SP GK VWA++G
Sbjct 189 VAVRDGGATPPKPPPPAGRGLLPGGRGMRMVESVSRVWGHSPWPGGGKVVWAVLG 243
>gi|302867343|ref|YP_003835980.1| ATP-binding region ATPase domain-containing protein [Micromonospora
aurantiaca ATCC 27029]
gi|315506251|ref|YP_004085138.1| ATP-binding region ATPase domain-containing protein [Micromonospora
sp. L5]
gi|302570202|gb|ADL46404.1| ATP-binding region ATPase domain protein [Micromonospora aurantiaca
ATCC 27029]
gi|315412870|gb|ADU10987.1| ATP-binding region ATPase domain protein [Micromonospora sp.
L5]
Length=243
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/246 (31%), Positives = 120/246 (49%), Gaps = 7/246 (2%)
Query 12 TALAIAVRTQDSVVILTADGALDSSSSALLRDSLTRATLEQPSAVIVNVTELQVAEESAW 71
T + VR + V ++ GALD + + + L QP A++V++ E++V E A
Sbjct 3 TRIRCEVRDESPVTVVRLAGALDLGTMRAVHEVLDNCLAAQPDALVVDLEEIEVGEPLAL 62
Query 72 SVFISARWQADFRADVPVLLVCGHRAGRAAVTRTGVARFMPVYPTEKAASKAIGRLARRN 131
SVF +A +A VP++L A + T R +PV + ++A
Sbjct 63 SVFAAAARRAADWPAVPMVLAAPCAETAAWLNETTACRVVPV---RRDCAEATALAGAEA 119
Query 132 FKRSDAQLPANLNSLRESRQLVREWLTQWSRPGLIPVALVVVNVFVENVLKHTGSDPVMR 191
R A+L + R +R+LV E +W+ P L A +V+ V NV++H G+ +
Sbjct 120 APRLRARLEPVAGACRRARELVTEACGRWNVPELAGPASLVLTELVGNVVRHAGTPMHVT 179
Query 192 IESDGPTATIAVSDGSSAPAVRLAS--PPKGIDVSGLAIVAALSRAWGSSPTSSGKTVWA 249
+ P +AV DGS A A R AS P+ GL +V L++ WGS+P +GK VWA
Sbjct 180 LTLRRPYLRVAVMDGSPADA-RAASSRDPRAEGGRGLMLVRELTQRWGSTPVGAGKVVWA 238
Query 250 IIGPEN 255
++ P N
Sbjct 239 ML-PAN 243
>gi|300786020|ref|YP_003766311.1| hypothetical protein AMED_4132 [Amycolatopsis mediterranei U32]
gi|299795534|gb|ADJ45909.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
gi|340527485|gb|AEK42690.1| hypothetical protein RAM_21050 [Amycolatopsis mediterranei S699]
Length=254
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/240 (29%), Positives = 117/240 (49%), Gaps = 10/240 (4%)
Query 16 IAVRTQDSVVILTADGALDSSSSALLRDSLTRATLEQPSAVIVNVTELQVAEESAWSVFI 75
+A+ + ++T G L+ +S LRD L + + P ++ +++ L + + S SVF
Sbjct 8 LAITRLERATVVTVTGDLNLASYPSLRDGLLKIATDAPDGLVADISGLVIDDSSLVSVFS 67
Query 76 SARWQADFRADVPVLLVCGHRAGRAAVTRTGVARFMPVYPTEKAASKAIGRLARRNFKRS 135
+ +P +V + + R V R++P+ AA+ A+ + RR + +
Sbjct 68 LVAMRIGDWPGIPFTIVAAGAVHQLLLGRHVVDRYVPIRADLAAATAALDQPVRRRSEHT 127
Query 136 DAQLPANLNSLRESRQLVREWLTQWSRPGLIPVALVVVNVFVENVLKHTGSDPVMRIESD 195
A+ + +R V L +W P L A + VENVLKHT S+P +R++
Sbjct 128 FARFD---GASARARDFVTAKLIEWEVPELAEDARFIATELVENVLKHTTSEPRLRLDLR 184
Query 196 GPTATIAVSDGSSAPAV---RLASPPKGIDVSGLAIVAALSRAWGSSPT-SSGKTVWAII 251
T+AV+D + PA+ RL G+ GL +VA ++R WG S + S GK VWA++
Sbjct 185 RGVCTVAVADQDTRPAMLLERLTPFEPGL---GLKLVAQIARVWGCSRSWSGGKVVWAVL 241
>gi|238064465|ref|ZP_04609174.1| hypothetical protein MCAG_05431 [Micromonospora sp. ATCC 39149]
gi|237886276|gb|EEP75104.1| hypothetical protein MCAG_05431 [Micromonospora sp. ATCC 39149]
Length=243
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/243 (30%), Positives = 123/243 (51%), Gaps = 6/243 (2%)
Query 11 PTALAIAVRTQDSVVILTADGALDSSSSALLRDSLTRATLEQPSAVIVNVTELQVAEESA 70
P+ + VR + V ++ GALD ++ ++ L R QP A++V++ ++ V ++ A
Sbjct 2 PSRITCEVRDESPVTVVRIAGALDLATMRVVHRVLDRCLTAQPDALVVDLHDITVRDQLA 61
Query 71 WSVFISARWQADFRADVPVLLVCGHRAGRAA-VTRTGVARFMPVYPTEKAASKAIGRLAR 129
SVF +A +A VP +L C A A+ +T + R +PV + ++A
Sbjct 62 LSVFAAAARRAAGWPAVPFVL-CAPPAQTASWLTESTACRGLPV---RRDCAEATRAAVA 117
Query 130 RNFKRSDAQLPANLNSLRESRQLVREWLTQWSRPGLIPVALVVVNVFVENVLKHTGSDPV 189
R +L + R +R+LV + +W+ P L+ A VV++ V NV++H +
Sbjct 118 AAAPRLRVRLEPVAGACRRARELVADACGRWNLPELVGPASVVLSELVGNVVRHARTPMT 177
Query 190 MRIESDGPTATIAVSDGSSAPAVRLASP-PKGIDVSGLAIVAALSRAWGSSPTSSGKTVW 248
+ + P +AV+D S A A A+P P+ GL +V L++ WGS+P GK VW
Sbjct 178 VTLTLRRPYLQVAVADDSRAAARMGAAPDPRAEGGRGLLLVRELTQRWGSAPLVDGKVVW 237
Query 249 AII 251
A++
Sbjct 238 AML 240
>gi|238060901|ref|ZP_04605610.1| stas domain-containing protein [Micromonospora sp. ATCC 39149]
gi|237882712|gb|EEP71540.1| stas domain-containing protein [Micromonospora sp. ATCC 39149]
Length=260
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 68/249 (28%), Positives = 109/249 (44%), Gaps = 15/249 (6%)
Query 11 PTALAIAVRTQDSVVILTADGALDSSSSALLRDSLTRATLEQPSAVIVNVTELQVAEESA 70
PT + V T +S +L G LD++ +A +RD+L +P V+ +++ L++ + +A
Sbjct 22 PTDVRCVVETDESSGVLRLTGVLDAAGTAAVRDALLVRLCARPGPVVADLSRLRLPDPAA 81
Query 71 WSVFISARWQADFRADVPVLLVCGHRAGRAAVTRTGVAR--FMPVYPTEKAASKAIGRLA 128
+F + AD P AG V TG A +PV T A+ A+ R
Sbjct 82 RGLFAEVHREI---ADWPA-------AGLLVVDPTGAAAGPGLPVCSTVAEATAALSR-- 129
Query 129 RRNFKRSDAQLPANLNSLRESRQLVREWLTQWSRPGLIPVALVVVNVFVENVLKHTGSDP 188
+ LP + + R++R LV + +W L + V V NV+ H +
Sbjct 130 SPTVAATTTALPPFVGAARQARALVTDGCARWGIDELAEAGCIAVTEMVNNVVAHAHTPM 189
Query 189 VMRIESDGPTATIAVSDGS-SAPAVRLASPPKGIDVSGLAIVAALSRAWGSSPTSSGKTV 247
+R+ G T I V D S P +PP GL ++ +SR WG + GK V
Sbjct 190 TVRLAPGGSTLYIGVRDHSRRQPTHSGLTPPTLAGGRGLLLIDTVSRRWGRTLLPDGKFV 249
Query 248 WAIIGPENQ 256
WA++ P
Sbjct 250 WAVLHPAGN 258
>gi|330468591|ref|YP_004406334.1| ATP-binding region ATPase domain-containing protein [Verrucosispora
maris AB-18-032]
gi|328811562|gb|AEB45734.1| ATP-binding region atpase domain protein [Verrucosispora maris
AB-18-032]
Length=242
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/234 (30%), Positives = 112/234 (48%), Gaps = 8/234 (3%)
Query 24 VVILTADGALDSSSSALLRDSLTRATLEQPSAVIVNVTELQVAEESAWSVFISARWQADF 83
V ++ G LD +++ + L R QP A++V++T L V ++ A +VF +A +A+
Sbjct 15 VTVVRVAGGLDLTTTRQVYAVLERCLSTQPDALVVDLTGLTVHDQLAVAVFTAAARRAEG 74
Query 84 RADVPVLLVCGHRAGRAAVTRTGVARFMPVYPTEKAASKAIGRLARRNFKRSDAQLPANL 143
VP+++ H ++ + AR +PV A++ A R +L
Sbjct 75 WPVVPMVICAPHPDPATSLAASTAARVVPVRHDCDEATRVADASA---VARMRVRLEPVA 131
Query 144 NSLRESRQLVREWLTQWSRPGLIPVALVVVNVFVENVLKHTGSDPVMRIESDGPTATIAV 203
+ R +R+LV + +W P + A VV++ V NV++H G+ + + P +AV
Sbjct 132 AACRRARELVVDACARWDLPAAVEPASVVLSELVGNVVRHAGTPMQVTVTLRRPWLHLAV 191
Query 204 SDGSSAPAVRLASPPKGIDVS--GLAIVAALSRAWGSSPTSSGKTVWAIIGPEN 255
DGS PA P D GL +V L+ WGS+P GK VWA + P N
Sbjct 192 VDGS--PAAAEPGRPGEHDEGGRGLLLVRELAARWGSAPAGDGKAVWATL-PAN 242
>gi|300785484|ref|YP_003765775.1| hypothetical protein AMED_3588 [Amycolatopsis mediterranei U32]
gi|299794998|gb|ADJ45373.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
gi|340526929|gb|AEK42134.1| hypothetical protein RAM_18240 [Amycolatopsis mediterranei S699]
Length=249
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 73/226 (33%), Positives = 108/226 (48%), Gaps = 11/226 (4%)
Query 31 GALDSSSSALLRDSLTRATLEQPSAVIVNVTELQVAEESAWSVFISARWQADFRADVPVL 90
G L+ + +LRD L + +QP AVIV++ L++ + SVF+S + + VP++
Sbjct 24 GVLNIHTYPVLRDCLLKCAADQPRAVIVDLGRLEITHDFLISVFVSVWMRVSQWSTVPLM 83
Query 91 LVCG--HRAGRAAVTRTGVARFMPVYPTEKAASKAIGRLARRNFKRSDAQLPANLNSLRE 148
LV H A A + RF+ V+ AA R+ R++ LP + S+
Sbjct 84 LVPAPVHAAMFAG---SPTRRFITVHAGVDAALGLADEPPPRH--RTELWLPPSERSVLA 138
Query 149 SRQLVREWLTQWSRPGLIPVALVVVNVFVENVLKHTGSDPVMRIESDGPTATIAVSDGSS 208
S + V + W L A+VV N V N +HT S +R+E T+AV+D
Sbjct 139 SARFVADTCHNWGIEALTADAVVVANELVANAARHTTSPATLRLELWRGRLTVAVADDDP 198
Query 209 APAVRLASPPK--GIDVSGLAIVAALSRAWGSS-PTSSGKTVWAII 251
P V L P + SGL V L+RA G S SSGK VWA++
Sbjct 199 RP-VLLPRPDRTSADSGSGLLRVTRLARAAGCSRRHSSGKVVWAVL 243
>gi|300788349|ref|YP_003768640.1| hypothetical protein AMED_6507 [Amycolatopsis mediterranei U32]
gi|299797863|gb|ADJ48238.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
gi|340529942|gb|AEK45147.1| hypothetical protein RAM_33370 [Amycolatopsis mediterranei S699]
Length=249
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 71/233 (31%), Positives = 113/233 (49%), Gaps = 15/233 (6%)
Query 26 ILTADGALDSSSSALLRDSLTRATLEQPSAVIVNVTELQVAEESAWSVFISARWQADFRA 85
I+ G L + LLRD++ + +QP AVIV++ L++ + SVF++ + +
Sbjct 19 IIRPAGVLSIQTYPLLRDAMLKCAADQPRAVIVDLDALEITHDYLISVFVTVWMRVSAWS 78
Query 86 DVPVLLVCGHRAGRAAVTRTGVARFMPVYPTEKAASKAIGRLARRNFKRSDAQLPANLNS 145
V +++V G A AA RF+ V T A + + A R +R++ LP + S
Sbjct 79 AVSLVVVPG-PAHAAAFDHGPAHRFLTVRSTVLDALEQLEEPAPR--QRTELWLPPSALS 135
Query 146 LRESRQLVREWLTQWSRPGLIPVALVVVNVFVENVLKHTGSDPVMRIESDGPTATIAVSD 205
+R +++ V + W L P A+ V + V N +HT S +R+E T+AV+D
Sbjct 136 VRAAQRFVTDTCDNWKVDTLTPHAVAVASELVANTARHTTSPARLRLELRRRRLTVAVAD 195
Query 206 GSSAPAVRLASP------PKGIDVSGLAIVAALSRAWGSS-PTSSGKTVWAII 251
P V L P P+G GL +V L+ A G S S GK VWA++
Sbjct 196 DDPRP-VALPHPAGDLAEPRG----GLHLVTQLAHASGCSRRQSGGKVVWAVL 243
>gi|291452862|ref|ZP_06592252.1| conserved hypothetical protein [Streptomyces albus J1074]
gi|291355811|gb|EFE82713.1| conserved hypothetical protein [Streptomyces albus J1074]
Length=146
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/116 (38%), Positives = 60/116 (52%), Gaps = 4/116 (3%)
Query 139 LPANLNSLRESRQLVREWLTQWSRPGLIPVALVVVNVFVENVLKHTGSDPVMRI---ESD 195
LP S +R+L+R+ L W+ L A +V V N +HT S PV+R+ D
Sbjct 29 LPCTPESAPAARRLIRQALGAWALDALADDACLVAGEMVANACRHTRS-PVIRVSVTRLD 87
Query 196 GPTATIAVSDGSSAPAVRLASPPKGIDVSGLAIVAALSRAWGSSPTSSGKTVWAII 251
G IAV+D S A +R S P +D GL +V A++ WG+ P GK VWA +
Sbjct 88 GTRVEIAVTDRSHALPIRKPSRPDALDGRGLVLVDAIAARWGADPKRWGKRVWAEV 143
>gi|315503808|ref|YP_004082695.1| ATP-binding region ATPase domain-containing protein [Micromonospora
sp. L5]
gi|315410427|gb|ADU08544.1| ATP-binding region ATPase domain protein [Micromonospora sp.
L5]
Length=229
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/254 (25%), Positives = 102/254 (41%), Gaps = 31/254 (12%)
Query 4 VSTAAKSPTALAIAVRTQDSVVILTADGALDSSSSALLRDSLTRATLEQPSAVIVNVTEL 63
+ A PT V T +S + G LDSS +RD+L P ++V+++ +
Sbjct 1 MHNGAIMPTDARCLVETDESSPTVRLTGVLDSSEVEAVRDALLARLWRHPGVLLVDLSGV 60
Query 64 QVAEESAWSVFISARWQADFRADVPVLLVCGHRAGRAAVTRTGVARFMPVYPTEKAASKA 123
++ + A R A+ V R + +P +
Sbjct 61 RIPDPVA----------------------------RDALDE--VCRAVDDWPAARLLLDP 90
Query 124 IGRLARRNFKRSDAQLPANLNSLRESRQLVREWLTQWSRPGLIPVALVVVNVFVENVLKH 183
G + DA+LP + RE+R LV +W P L A + V V NV+ H
Sbjct 91 HGPPPDAPPEPLDAELPPVAEAAREARVLVTGGCARWGLPELTEPACIAVTEMVNNVVAH 150
Query 184 TGSDPVMRIESDGPTATIAVSDGSSA-PAVRLASPPKGIDVSGLAIVAALSRAWGSSPTS 242
+ +R+ G +AV D S+ PA +P + GL ++ ++R WGS+
Sbjct 151 AVTPMTLRLAPRGGALHVAVRDHSTGRPAYGGPAPVDSVGGRGLLLIDTVARRWGSTALP 210
Query 243 SGKTVWAIIGPENQ 256
GK VW ++ E++
Sbjct 211 DGKVVWCVLYAEDE 224
>gi|284033261|ref|YP_003383192.1| protein serine phosphatase with GAF(s) sensor(s) [Kribbella flavida
DSM 17836]
gi|283812554|gb|ADB34393.1| protein serine phosphatase with GAF(s) sensor(s) [Kribbella flavida
DSM 17836]
Length=822
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/106 (37%), Positives = 56/106 (53%), Gaps = 4/106 (3%)
Query 148 ESRQLVREWLTQWSRPGLIPVALVVVNVFVENVLKHTGSDPVMRIESDGPTATIAVSD-G 206
++R VR+ LT+W +I AL V V N ++HTG +R+ DG T+ V+D G
Sbjct 711 QARAFVRDRLTEWGLADVIDRALTVTVELVSNAVRHTGEPGTLRLHHDGTRLTVDVADHG 770
Query 207 SSAPAVRLASPP-KGIDVSGLAIVAALSRAWGSSPTSSGKTVWAII 251
++ P RL P + GL +V A + WG+ T GK VWA I
Sbjct 771 ATTP--RLFEPSVEEEQHRGLYLVNAFAARWGTRSTPDGKVVWAEI 814
>gi|297203318|ref|ZP_06920715.1| regulatory protein [Streptomyces sviceus ATCC 29083]
gi|297148370|gb|EDY55440.2| regulatory protein [Streptomyces sviceus ATCC 29083]
Length=140
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/122 (36%), Positives = 64/122 (53%), Gaps = 9/122 (7%)
Query 129 RRNFKRSDAQLPANLNSLRESRQLVREWLTQWSRPGLIPVALVVVNVFVENVLKHTGSDP 188
RR +R+D L ++ E+R+ +RE L W RPG +A ++ + V N L HT D
Sbjct 18 RRTLERAD------LGAVPETRRALRELLRHWGRPGRSEIAELLTSELVTNALVHTDHDA 71
Query 189 VMRIESDGPTA-TIAVSDG-SSAPAVRLASPPKGIDVSGLAIVAALSRAWGSSPTSSGKT 246
V+ + GP A + V D + P VR+A+ GLA+V +L+ AWG GK+
Sbjct 72 VV-TATVGPRALRVEVRDFVARIPRVRVANADDHTHGRGLALVQSLADAWGVRAHGVGKS 130
Query 247 VW 248
VW
Sbjct 131 VW 132
>gi|302869710|ref|YP_003838347.1| ATP-binding region ATPase domain-containing protein [Micromonospora
aurantiaca ATCC 27029]
gi|302572569|gb|ADL48771.1| ATP-binding region ATPase domain protein [Micromonospora aurantiaca
ATCC 27029]
Length=243
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/254 (23%), Positives = 97/254 (39%), Gaps = 31/254 (12%)
Query 4 VSTAAKSPTALAIAVRTQDSVVILTADGALDSSSSALLRDSLTRATLEQPSAVIVNVTEL 63
V A PT V T +S + G LD S +RD+L P ++V+++ +
Sbjct 15 VHNGAIMPTDARCLVETDESSPTVRLTGVLDRSEVEAVRDALLARLWRHPGVLLVDLSGV 74
Query 64 QVAEESAWSVFISARWQADFRADVPVLLVCGHRAGRAAVTRTGVARFMPVYPTEKAASKA 123
++ + A V R + +P +
Sbjct 75 RIPDPVARDALDE------------------------------VCRAVDDWPAARLLLDP 104
Query 124 IGRLARRNFKRSDAQLPANLNSLRESRQLVREWLTQWSRPGLIPVALVVVNVFVENVLKH 183
G + DA+LP + RE+R LV +W P L A + V V NV+ H
Sbjct 105 HGPPPDAPPEPLDAELPPVAEAAREARVLVAGGCARWGLPELTEPACIAVTEMVNNVVAH 164
Query 184 TGSDPVMRIESDGPTATIAVSDGSSA-PAVRLASPPKGIDVSGLAIVAALSRAWGSSPTS 242
+ +R+ G +AV D S+ P +P + GL ++ ++R WGS+
Sbjct 165 AVTPMTLRLAPRGGALHLAVRDHSTGRPTYGGPAPVDSVGGRGLLLIDTVARRWGSTALP 224
Query 243 SGKTVWAIIGPENQ 256
GK VW ++ E++
Sbjct 225 DGKVVWCVLYAEDE 238
>gi|302543646|ref|ZP_07295988.1| conserved hypothetical protein [Streptomyces hygroscopicus ATCC
53653]
gi|302461264|gb|EFL24357.1| conserved hypothetical protein [Streptomyces himastatinicus ATCC
53653]
Length=210
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/108 (36%), Positives = 55/108 (51%), Gaps = 3/108 (2%)
Query 150 RQLVREWLTQWSRPGLIPVALVVVNVFVENVLKHTG--SDPVMRIESDGPTATIAVSD-G 206
R+++R LT W P L+ A + V+ V NV+ H G + M ++ +G IA+SD
Sbjct 21 RRIMRTHLTLWGLPDLVEAAQICVSELVANVITHVGLGTPTTMAVDMNGTYLRIAISDPD 80
Query 207 SSAPAVRLASPPKGIDVSGLAIVAALSRAWGSSPTSSGKTVWAIIGPE 254
S A L++ GLA+V A++ WG PT GKT W I E
Sbjct 81 SRALPTLLSASTTAESGRGLALVTAMTDRWGVIPTERGKTTWCEIATE 128
>gi|300787037|ref|YP_003767328.1| two-component system histidine kinase [Amycolatopsis mediterranei
U32]
gi|299796551|gb|ADJ46926.1| two-component system histidine kinase [Amycolatopsis mediterranei
U32]
gi|340528533|gb|AEK43738.1| two-component system histidine kinase [Amycolatopsis mediterranei
S699]
Length=156
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/117 (34%), Positives = 56/117 (48%), Gaps = 2/117 (1%)
Query 135 SDAQLPANLNSLRESRQLVREWLTQWSRPGLIPVALVVVNVFVENVLKHTGSDPVMRIES 194
++ L + L +R+ R L W+ I AL+VV N L+H DPV+R+
Sbjct 33 AECVLTGSAGDLAAARRFTRLALLAWTAGAAIDDALLVVTELAANALRHGCGDPVLRLSV 92
Query 195 DGPTATIAVSDGSSAPAVRLASPPKGIDVSGLAIVAALSRAWGSSPTSSGKTVWAII 251
DG I V D + AP VR + P G GL +V LS G++ GK VW ++
Sbjct 93 DGADVRIEVFDDNPAPPVRRPAGPDG--GWGLPLVDRLSSVRGTARHGRGKVVWCVL 147
>gi|119715499|ref|YP_922464.1| response regulator receiver [Nocardioides sp. JS614]
gi|119536160|gb|ABL80777.1| response regulator receiver [Nocardioides sp. JS614]
Length=282
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/119 (34%), Positives = 56/119 (48%), Gaps = 6/119 (5%)
Query 134 RSDAQLPANLNSLRESRQLVREWLTQWSRPGLIPVALVVVNVFVENVLKHTGSDPVMRIE 193
R+ LP +L S+ +R+ VRE L +W G + AL+V + N L H GS +R+
Sbjct 157 RATIDLPDDLRSVSTARRFVREKLAEWGVDGPVDDALLVTSELAANALTHAGSSYRLRLS 216
Query 194 SDGPTATIAVSDGSSA---PAVRLASPPKGIDVSGLAIVAALSRAWGSSPTSSGKTVWA 249
I V+DG P + G GL +V AL+ +WG SGK VWA
Sbjct 217 VSERALRIEVADGGPGTPEPQPLTETEEHG---RGLHLVGALAASWGMESAGSGKRVWA 272
>gi|29826736|ref|NP_821370.1| hypothetical protein SAV_196 [Streptomyces avermitilis MA-4680]
gi|29603832|dbj|BAC67905.1| hypothetical protein [Streptomyces avermitilis MA-4680]
Length=606
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/128 (33%), Positives = 65/128 (51%), Gaps = 10/128 (7%)
Query 131 NFKRSDAQLPANLNSLR-----ESRQLVREWLTQWSRPGLIPVALVVVNVFVENVLKH-T 184
+ +R A +P +L R+++R L W++P L+ A ++ V N +H +
Sbjct 24 SIERDPASMPGHLTKADSVWPGRLRRIIRAGLKLWNQPALVETAELLTTELVTNAFRHGS 83
Query 185 GSDPVMRIESDGPTATIAVSDGS-SAPAVRLASPPKGIDVSGLAIVAALSRAWGSSPTSS 243
G+D R+ G I V DGS P +R ASP + D GLA+V+A++ WG+ TS
Sbjct 84 GTDIGFRLLISGDHVVIEVRDGSPDRPVLRRASP-EDEDGRGLALVSAMADEWGT--TSD 140
Query 244 GKTVWAII 251
G T W +
Sbjct 141 GTTTWCTL 148
>gi|295838615|ref|ZP_06825548.1| serine phosphatase [Streptomyces sp. SPB74]
gi|295827092|gb|EDY46954.2| serine phosphatase [Streptomyces sp. SPB74]
Length=129
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/117 (34%), Positives = 57/117 (49%), Gaps = 6/117 (5%)
Query 137 AQLPANLNSLRESRQLVREWLTQWSRPGLIPVALVVVNVFVENVLKHTGSD----PVMRI 192
A+LP S +R L+RE LT W L A ++++ V N +KH V ++
Sbjct 11 AELPRTAESAATARMLIREVLTYWDLAHLTEPAALIISELVGNAVKHAEGGVIRLAVKKL 70
Query 193 ESDGPTATIAVSDGSSAPAVRLASPPKGIDVSGLAIVAALSRAWGSSPTSSGKTVWA 249
+ +G I VSD S A + P+ + GL +V A + AWG+ P GK VWA
Sbjct 71 DVEG--VRITVSDCSHARPLPRTPCPEALKGRGLTLVDAFASAWGTDPEPEGKRVWA 125
>gi|289767420|ref|ZP_06526798.1| integral membrane sensor protein [Streptomyces lividans TK24]
gi|289697619|gb|EFD65048.1| integral membrane sensor protein [Streptomyces lividans TK24]
Length=831
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/112 (38%), Positives = 60/112 (54%), Gaps = 8/112 (7%)
Query 149 SRQLVREWLTQWSRPGLIPVALVVVNVFVENVLKHTGSDPVMRIESDGPTATIA-VSDGS 207
+RQ VRE L W LIP ++V+ V NV++H V+R+ D T I V DGS
Sbjct 690 ARQHVREQLAAWGMDHLIPATELIVSELVGNVVRHAKGPIVLRLLYD--TELICEVYDGS 747
Query 208 -SAPAVRLASPPKGIDVSGLAIVAALSRAWGSSPTSSGKTVWA---IIGPEN 255
+ P +R A+ GL ++ ALSR WG+ T++GK +W + G EN
Sbjct 748 LTMPRIRRATDTDE-GGRGLQLITALSRRWGTRYTANGKCIWTEQDLAGAEN 798
>gi|21225438|ref|NP_631217.1| hypothetical protein SCO7158 [Streptomyces coelicolor A3(2)]
gi|9716978|emb|CAC01647.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
Length=812
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/112 (38%), Positives = 60/112 (54%), Gaps = 8/112 (7%)
Query 149 SRQLVREWLTQWSRPGLIPVALVVVNVFVENVLKHTGSDPVMRIESDGPTATIA-VSDGS 207
+RQ VRE L W LIP ++V+ V NV++H V+R+ D T I V DGS
Sbjct 671 ARQHVREQLAAWGMDHLIPATELIVSELVGNVVRHAKGPIVLRLLYD--TELICEVYDGS 728
Query 208 -SAPAVRLASPPKGIDVSGLAIVAALSRAWGSSPTSSGKTVWA---IIGPEN 255
+ P +R A+ GL ++ ALSR WG+ T++GK +W + G EN
Sbjct 729 LTMPRIRRAT-DTDEGGRGLQLITALSRRWGTRYTANGKCIWTEQDLAGAEN 779
>gi|152964316|ref|YP_001360100.1| anti-sigma regulatory factor, serine/threonine protein kinase
[Kineococcus radiotolerans SRS30216]
gi|151358833|gb|ABS01836.1| putative anti-sigma regulatory factor, serine/threonine protein
kinase [Kineococcus radiotolerans SRS30216]
Length=122
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/113 (37%), Positives = 58/113 (52%), Gaps = 2/113 (1%)
Query 138 QLPANLNSLRESRQLVREWLTQWSRPGLIPVALVVVNVFVENVLKHTGSDPV-MRIESDG 196
LPA+L++ RE+R VR L L+ AL+VV+ N ++H G PV +E
Sbjct 7 DLPADLSAAREARAFVRARLCPQHGGELLDRALLVVSELAVNAVEH-GEPPVRAGVECRS 65
Query 197 PTATIAVSDGSSAPAVRLASPPKGIDVSGLAIVAALSRAWGSSPTSSGKTVWA 249
+ VSDGS+AP A P+ G+ +V + AWG P +GKTVW
Sbjct 66 GVLHLEVSDGSAAPPRVSAPGPEAESGRGVNLVQTVCSAWGVRPEPAGKTVWC 118
>gi|297159117|gb|ADI08829.1| regulatory protein [Streptomyces bingchenggensis BCW-1]
Length=152
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/115 (40%), Positives = 58/115 (51%), Gaps = 6/115 (5%)
Query 139 LPANLNSLRESRQLVREWLTQWSRPGLIPVALVVVNVFVENVLKHTGSDPVMRIESDGPT 198
LP S R +R LVR W PGL A +V++ V N ++H+GS MR+ P
Sbjct 33 LPCEPESARRARLLVRTACDTWHLPGLADRAALVISELVSNSVEHSGSR-AMRVTVSRPA 91
Query 199 AT---IAVSDGSSA-PAVRLASPPKGIDVSGLAIVAALSRAWGSSPTSSGKTVWA 249
++V D S A PA R AS GLA+V A+S WG+ P GK VWA
Sbjct 92 PDRVRLSVVDRSHAKPAARTAS-EDDEHGRGLALVEAVSDRWGTDPLRWGKRVWA 145
Lambda K H
0.316 0.127 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 380985698940
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40