BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0944
Length=158
Score E
Sequences producing significant alignments: (Bits) Value
gi|15840367|ref|NP_335404.1| formamidopyrimidine-DNA-glycosylase... 321 3e-86
gi|167967805|ref|ZP_02550082.1| hypothetical formamidopyrimidine... 320 5e-86
gi|298524435|ref|ZP_07011844.1| hypothetical formamidopyrimidine... 319 9e-86
gi|15608084|ref|NP_215459.1| formamidopyrimidine-DNA glycosylase... 319 1e-85
gi|289744675|ref|ZP_06504053.1| formamidopyrimidine-DNA-glycosyl... 318 1e-85
gi|289568914|ref|ZP_06449141.1| formamidopyrimidine-DNA glycosyl... 317 5e-85
gi|340625956|ref|YP_004744408.1| dna glycosylase [Mycobacterium ... 303 6e-81
gi|240172877|ref|ZP_04751536.1| hypothetical protein MkanA1_2642... 280 4e-74
gi|296169701|ref|ZP_06851319.1| possible DNA-(apurinic or apyrim... 276 9e-73
gi|254819353|ref|ZP_05224354.1| hypothetical protein MintA_05478... 273 4e-72
gi|41406987|ref|NP_959823.1| hypothetical protein MAP0889 [Mycob... 273 5e-72
gi|118464184|ref|YP_880320.1| formamidopyrimidine-DNA glycosylas... 273 5e-72
gi|118468423|ref|YP_889782.1| formamidopyrimidine-DNA glycosylas... 262 1e-68
gi|183984529|ref|YP_001852820.1| formamidopyrimidine-DNA glycosy... 256 7e-67
gi|120405833|ref|YP_955662.1| DNA-formamidopyrimidine glycosylas... 256 8e-67
gi|333989530|ref|YP_004522144.1| formamidopyrimidine-DNA glycosy... 256 1e-66
gi|118619547|ref|YP_907879.1| formamidopyrimidine-DNA glycosylas... 251 3e-65
gi|342860552|ref|ZP_08717203.1| DNA-formamidopyrimidine glycosyl... 251 3e-65
gi|108801300|ref|YP_641497.1| DNA-formamidopyrimidine glycosylas... 249 9e-65
gi|169628133|ref|YP_001701782.1| putative formamidopyrimidine-DN... 247 5e-64
gi|145222442|ref|YP_001133120.1| DNA-formamidopyrimidine glycosy... 240 5e-62
gi|331694040|ref|YP_004330279.1| DNA-formamidopyrimidine glycosy... 239 1e-61
gi|258650476|ref|YP_003199632.1| DNA-(apurinic or apyrimidinic s... 227 4e-58
gi|325003039|ref|ZP_08124151.1| DNA-formamidopyrimidine glycosyl... 224 2e-57
gi|111019239|ref|YP_702211.1| DNA-formamidopyrimidine glycosylas... 223 7e-57
gi|343927235|ref|ZP_08766713.1| putative DNA glycosylase [Gordon... 223 8e-57
gi|226361374|ref|YP_002779152.1| DNA glycosylase [Rhodococcus op... 223 1e-56
gi|262201295|ref|YP_003272503.1| DNA-formamidopyrimidine glycosy... 221 2e-56
gi|300782065|ref|YP_003762356.1| formamidopyrimidine-DNA glycosy... 221 3e-56
gi|54026994|ref|YP_121236.1| putative formamidopyrimidine-DNA gl... 221 3e-56
gi|326383692|ref|ZP_08205377.1| DNA-formamidopyrimidine glycosyl... 218 3e-55
gi|312138559|ref|YP_004005895.1| DNA-formamidopyrimidine glycosy... 218 3e-55
gi|302531490|ref|ZP_07283832.1| formamidopyrimidine-DNA glycosyl... 217 4e-55
gi|229495049|ref|ZP_04388795.1| DNA-formamidopyrimidine glycosyl... 216 8e-55
gi|226307944|ref|YP_002767904.1| DNA glycosylase [Rhodococcus er... 216 9e-55
gi|291008458|ref|ZP_06566431.1| formamidopyrimidine-DNA glycosyl... 214 4e-54
gi|134096732|ref|YP_001102393.1| formamidopyrimidine-DNA glycosy... 214 4e-54
gi|284988837|ref|YP_003407391.1| DNA-formamidopyrimidine glycosy... 211 3e-53
gi|296141029|ref|YP_003648272.1| DNA-formamidopyrimidine glycosy... 210 6e-53
gi|159040486|ref|YP_001539739.1| DNA-(apurinic or apyrimidinic s... 209 7e-53
gi|302870627|ref|YP_003839264.1| DNA-(apurinic or apyrimidinic s... 209 2e-52
gi|315506864|ref|YP_004085751.1| DNA-(apurinic or apyrimidinic s... 208 2e-52
gi|330470731|ref|YP_004408474.1| DNA-formamidopyrimidine glycosy... 208 2e-52
gi|333919500|ref|YP_004493081.1| fomramidopyrimidine-DNA glycosy... 208 2e-52
gi|145597000|ref|YP_001161297.1| DNA-(apurinic or apyrimidinic s... 207 3e-52
gi|297155165|gb|ADI04877.1| formamidopyrimidine-DNA glycosylase ... 199 2e-49
gi|317508930|ref|ZP_07966566.1| formamidopyrimidine-DNA glycosyl... 197 5e-49
gi|238061799|ref|ZP_04606508.1| DNA-(apurinic or apyrimidinic si... 193 6e-48
gi|345011400|ref|YP_004813754.1| Formamidopyrimidine-DNA glycosy... 191 2e-47
gi|290955721|ref|YP_003486903.1| formamidopyrimidine-DNA glycosy... 190 6e-47
>gi|15840367|ref|NP_335404.1| formamidopyrimidine-DNA-glycosylase [Mycobacterium tuberculosis
CDC1551]
gi|148822152|ref|YP_001286906.1| formamidopyrimidine-DNA glycosylase [Mycobacterium tuberculosis
F11]
gi|253800030|ref|YP_003033031.1| formamidopyrimidine-DNA glycosylase [Mycobacterium tuberculosis
KZN 1435]
13 more sequence titles
Length=166
Score = 321 bits (822), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 158/158 (100%), Positives = 158/158 (100%), Gaps = 0/158 (0%)
Query 1 VAGTPQPRALGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKI 60
VAGTPQPRALGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKI
Sbjct 9 VAGTPQPRALGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKI 68
Query 61 SPFATAGKLSGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPV 120
SPFATAGKLSGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPV
Sbjct 69 SPFATAGKLSGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPV 128
Query 121 CGDTVREVSFADKSFQYCPTCQTGGKALADRRMSRLLK 158
CGDTVREVSFADKSFQYCPTCQTGGKALADRRMSRLLK
Sbjct 129 CGDTVREVSFADKSFQYCPTCQTGGKALADRRMSRLLK 166
>gi|167967805|ref|ZP_02550082.1| hypothetical formamidopyrimidine-DNA glycosylase [Mycobacterium
tuberculosis H37Ra]
gi|254363871|ref|ZP_04979917.1| hypothetical formamidopyrimidine-DNA glycosylase [Mycobacterium
tuberculosis str. Haarlem]
gi|254549924|ref|ZP_05140371.1| formamidopyrimidine-DNA glycosylase [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
22 more sequence titles
Length=160
Score = 320 bits (819), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 158/158 (100%), Positives = 158/158 (100%), Gaps = 0/158 (0%)
Query 1 VAGTPQPRALGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKI 60
VAGTPQPRALGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKI
Sbjct 3 VAGTPQPRALGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKI 62
Query 61 SPFATAGKLSGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPV 120
SPFATAGKLSGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPV
Sbjct 63 SPFATAGKLSGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPV 122
Query 121 CGDTVREVSFADKSFQYCPTCQTGGKALADRRMSRLLK 158
CGDTVREVSFADKSFQYCPTCQTGGKALADRRMSRLLK
Sbjct 123 CGDTVREVSFADKSFQYCPTCQTGGKALADRRMSRLLK 160
>gi|298524435|ref|ZP_07011844.1| hypothetical formamidopyrimidine-DNA glycosylase [Mycobacterium
tuberculosis 94_M4241A]
gi|298494229|gb|EFI29523.1| hypothetical formamidopyrimidine-DNA glycosylase [Mycobacterium
tuberculosis 94_M4241A]
Length=166
Score = 319 bits (817), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 157/158 (99%), Positives = 158/158 (100%), Gaps = 0/158 (0%)
Query 1 VAGTPQPRALGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKI 60
VAGTPQPRALGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKI
Sbjct 9 VAGTPQPRALGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKI 68
Query 61 SPFATAGKLSGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPV 120
SPFATAGKLSGAQLTCLHEA+ASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPV
Sbjct 69 SPFATAGKLSGAQLTCLHEAIASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPV 128
Query 121 CGDTVREVSFADKSFQYCPTCQTGGKALADRRMSRLLK 158
CGDTVREVSFADKSFQYCPTCQTGGKALADRRMSRLLK
Sbjct 129 CGDTVREVSFADKSFQYCPTCQTGGKALADRRMSRLLK 166
>gi|15608084|ref|NP_215459.1| formamidopyrimidine-DNA glycosylase [Mycobacterium tuberculosis
H37Rv]
gi|31792133|ref|NP_854626.1| formamidopyrimidine-DNA glycosylase [Mycobacterium bovis AF2122/97]
gi|121636869|ref|YP_977092.1| putative formamidopyrimidine-DNA glycosylase [Mycobacterium bovis
BCG str. Pasteur 1173P2]
31 more sequence titles
Length=158
Score = 319 bits (817), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 157/158 (99%), Positives = 158/158 (100%), Gaps = 0/158 (0%)
Query 1 VAGTPQPRALGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKI 60
+AGTPQPRALGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKI
Sbjct 1 MAGTPQPRALGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKI 60
Query 61 SPFATAGKLSGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPV 120
SPFATAGKLSGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPV
Sbjct 61 SPFATAGKLSGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPV 120
Query 121 CGDTVREVSFADKSFQYCPTCQTGGKALADRRMSRLLK 158
CGDTVREVSFADKSFQYCPTCQTGGKALADRRMSRLLK
Sbjct 121 CGDTVREVSFADKSFQYCPTCQTGGKALADRRMSRLLK 158
>gi|289744675|ref|ZP_06504053.1| formamidopyrimidine-DNA-glycosylase [Mycobacterium tuberculosis
02_1987]
gi|289685203|gb|EFD52691.1| formamidopyrimidine-DNA-glycosylase [Mycobacterium tuberculosis
02_1987]
Length=166
Score = 318 bits (816), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 157/158 (99%), Positives = 158/158 (100%), Gaps = 0/158 (0%)
Query 1 VAGTPQPRALGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKI 60
VAGTPQPRALGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNA+SDEILHVAKI
Sbjct 9 VAGTPQPRALGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAHSDEILHVAKI 68
Query 61 SPFATAGKLSGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPV 120
SPFATAGKLSGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPV
Sbjct 69 SPFATAGKLSGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPV 128
Query 121 CGDTVREVSFADKSFQYCPTCQTGGKALADRRMSRLLK 158
CGDTVREVSFADKSFQYCPTCQTGGKALADRRMSRLLK
Sbjct 129 CGDTVREVSFADKSFQYCPTCQTGGKALADRRMSRLLK 166
>gi|289568914|ref|ZP_06449141.1| formamidopyrimidine-DNA glycosylase [Mycobacterium tuberculosis
T17]
gi|289542668|gb|EFD46316.1| formamidopyrimidine-DNA glycosylase [Mycobacterium tuberculosis
T17]
Length=158
Score = 317 bits (811), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 156/158 (99%), Positives = 158/158 (100%), Gaps = 0/158 (0%)
Query 1 VAGTPQPRALGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKI 60
+AGTPQPRALGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKI
Sbjct 1 MAGTPQPRALGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKI 60
Query 61 SPFATAGKLSGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPV 120
SPFATAGKLSGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRV+ARTGLPCPV
Sbjct 61 SPFATAGKLSGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVYARTGLPCPV 120
Query 121 CGDTVREVSFADKSFQYCPTCQTGGKALADRRMSRLLK 158
CGDTVREVSFADKSFQYCPTCQTGGKALADRRMSRLLK
Sbjct 121 CGDTVREVSFADKSFQYCPTCQTGGKALADRRMSRLLK 158
>gi|340625956|ref|YP_004744408.1| dna glycosylase [Mycobacterium canettii CIPT 140010059]
gi|340004146|emb|CCC43284.1| dna glycosylase [Mycobacterium canettii CIPT 140010059]
Length=287
Score = 303 bits (776), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 151/154 (99%), Positives = 151/154 (99%), Gaps = 0/154 (0%)
Query 5 PQPRALGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFA 64
P ALGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFA
Sbjct 134 PGIAALGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFA 193
Query 65 TAGKLSGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPVCGDT 124
TAGKLSGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPVCGDT
Sbjct 194 TAGKLSGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPVCGDT 253
Query 125 VREVSFADKSFQYCPTCQTGGKALADRRMSRLLK 158
VREVSFADKSFQYCPTCQTGGKALADRRMSRLLK
Sbjct 254 VREVSFADKSFQYCPTCQTGGKALADRRMSRLLK 287
>gi|240172877|ref|ZP_04751536.1| hypothetical protein MkanA1_26427 [Mycobacterium kansasii ATCC
12478]
Length=287
Score = 280 bits (717), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 138/150 (92%), Positives = 142/150 (95%), Gaps = 0/150 (0%)
Query 9 ALGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFATAGK 68
ALGPDAL++ST+DLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFATAGK
Sbjct 138 ALGPDALELSTEDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFATAGK 197
Query 69 LSGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPVCGDTVREV 128
LS QL LH+AM SVLSDAV RSVGQGAAMLKGEKRSGLRVHARTGLPCPVCGDTVREV
Sbjct 198 LSAGQLATLHDAMVSVLSDAVHRSVGQGAAMLKGEKRSGLRVHARTGLPCPVCGDTVREV 257
Query 129 SFADKSFQYCPTCQTGGKALADRRMSRLLK 158
SFADKSFQYCP CQTGGK LADRRMSRLLK
Sbjct 258 SFADKSFQYCPRCQTGGKVLADRRMSRLLK 287
>gi|296169701|ref|ZP_06851319.1| possible DNA-(apurinic or apyrimidinic site) lyase [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295895698|gb|EFG75394.1| possible DNA-(apurinic or apyrimidinic site) lyase [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length=287
Score = 276 bits (705), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 136/150 (91%), Positives = 140/150 (94%), Gaps = 0/150 (0%)
Query 9 ALGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFATAGK 68
ALGPDAL++ DDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFATAGK
Sbjct 138 ALGPDALELGVDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFATAGK 197
Query 69 LSGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPVCGDTVREV 128
L+ QLT LH+AM SVL DAV RSVGQGAA LKGEKRSGLRVHARTGLPCPVCGDTVREV
Sbjct 198 LTDEQLTTLHDAMVSVLRDAVSRSVGQGAATLKGEKRSGLRVHARTGLPCPVCGDTVREV 257
Query 129 SFADKSFQYCPTCQTGGKALADRRMSRLLK 158
SFADKSFQYCPTCQTGGK LADRRMSRLLK
Sbjct 258 SFADKSFQYCPTCQTGGKVLADRRMSRLLK 287
>gi|254819353|ref|ZP_05224354.1| hypothetical protein MintA_05478 [Mycobacterium intracellulare
ATCC 13950]
Length=287
Score = 273 bits (699), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 135/154 (88%), Positives = 141/154 (92%), Gaps = 0/154 (0%)
Query 5 PQPRALGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFA 64
PQ +LGPDALD+ DDLA +LAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFA
Sbjct 134 PQIASLGPDALDLGPDDLARVLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFA 193
Query 65 TAGKLSGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPVCGDT 124
TAGKLS QL LH+AM +VL+DAV RSVGQGAA LKGEKRSGLRVHARTGLPCPVCGDT
Sbjct 194 TAGKLSEKQLAALHDAMITVLTDAVSRSVGQGAATLKGEKRSGLRVHARTGLPCPVCGDT 253
Query 125 VREVSFADKSFQYCPTCQTGGKALADRRMSRLLK 158
VREVSFADKSFQYCPTCQTGGK LADRRMSRLLK
Sbjct 254 VREVSFADKSFQYCPTCQTGGKVLADRRMSRLLK 287
>gi|41406987|ref|NP_959823.1| hypothetical protein MAP0889 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41395338|gb|AAS03206.1| hypothetical protein MAP_0889 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336461437|gb|EGO40308.1| formamidopyrimidine-DNA glycosylase [Mycobacterium avium subsp.
paratuberculosis S397]
Length=287
Score = 273 bits (699), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 137/157 (88%), Positives = 141/157 (90%), Gaps = 0/157 (0%)
Query 2 AGTPQPRALGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKIS 61
A P ALGPDALD+ D LA LLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKIS
Sbjct 131 ARVPGIAALGPDALDLDVDALADLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKIS 190
Query 62 PFATAGKLSGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPVC 121
PFATAGKLS QL LH+AM +VL+DAV RSVGQGAAMLKGEKRSGLRVHARTGLPCPVC
Sbjct 191 PFATAGKLSDKQLATLHDAMVTVLTDAVSRSVGQGAAMLKGEKRSGLRVHARTGLPCPVC 250
Query 122 GDTVREVSFADKSFQYCPTCQTGGKALADRRMSRLLK 158
GDTVREVSFADKSFQYCPTCQTGGK LADRRMSRLLK
Sbjct 251 GDTVREVSFADKSFQYCPTCQTGGKILADRRMSRLLK 287
>gi|118464184|ref|YP_880320.1| formamidopyrimidine-DNA glycosylase [Mycobacterium avium 104]
gi|254773947|ref|ZP_05215463.1| formamidopyrimidine-DNA glycosylase [Mycobacterium avium subsp.
avium ATCC 25291]
gi|118165471|gb|ABK66368.1| formamidopyrimidine-DNA glycosylase [Mycobacterium avium 104]
Length=287
Score = 273 bits (698), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 137/157 (88%), Positives = 141/157 (90%), Gaps = 0/157 (0%)
Query 2 AGTPQPRALGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKIS 61
A P ALGPDALD+ D LA LLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKIS
Sbjct 131 ARVPGIAALGPDALDLDVDALADLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKIS 190
Query 62 PFATAGKLSGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPVC 121
PFATAGKLS QL LH+AM +VL+DAV RSVGQGAAMLKGEKRSGLRVHARTGLPCPVC
Sbjct 191 PFATAGKLSDKQLATLHDAMVTVLTDAVSRSVGQGAAMLKGEKRSGLRVHARTGLPCPVC 250
Query 122 GDTVREVSFADKSFQYCPTCQTGGKALADRRMSRLLK 158
GDTVREVSFADKSFQYCPTCQTGGK LADRRMSRLLK
Sbjct 251 GDTVREVSFADKSFQYCPTCQTGGKILADRRMSRLLK 287
>gi|118468423|ref|YP_889782.1| formamidopyrimidine-DNA glycosylase [Mycobacterium smegmatis
str. MC2 155]
gi|118169710|gb|ABK70606.1| formamidopyrimidine-DNA glycosylase [Mycobacterium smegmatis
str. MC2 155]
Length=288
Score = 262 bits (670), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 128/154 (84%), Positives = 139/154 (91%), Gaps = 0/154 (0%)
Query 5 PQPRALGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFA 64
PQ +LGPDAL + + LAG+LAGN+GRIKTVITDQKV+AGIGNAYSDEILHVAK+SPF
Sbjct 135 PQIASLGPDALSLDSTALAGVLAGNSGRIKTVITDQKVMAGIGNAYSDEILHVAKLSPFT 194
Query 65 TAGKLSGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPVCGDT 124
TAGKL+ AQL LH+AM +VL+DAV RSVGQ AA LKGEKRSGLRVHARTGLPCPVCGDT
Sbjct 195 TAGKLTDAQLGALHDAMITVLTDAVSRSVGQQAATLKGEKRSGLRVHARTGLPCPVCGDT 254
Query 125 VREVSFADKSFQYCPTCQTGGKALADRRMSRLLK 158
VREVSFADKSFQYCPTCQTGGK LADRRMSRLLK
Sbjct 255 VREVSFADKSFQYCPTCQTGGKVLADRRMSRLLK 288
>gi|183984529|ref|YP_001852820.1| formamidopyrimidine-DNA glycosylase [Mycobacterium marinum M]
gi|183177855|gb|ACC42965.1| formamidopyrimidine-DNA glycosylase [Mycobacterium marinum M]
Length=287
Score = 256 bits (654), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 126/149 (85%), Positives = 135/149 (91%), Gaps = 0/149 (0%)
Query 10 LGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFATAGKL 69
LGPDAL++ ++LAG+L +TGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFATA KL
Sbjct 139 LGPDALELGPEELAGVLGPHTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFATAAKL 198
Query 70 SGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPVCGDTVREVS 129
S QL LH+A+ SVL+DAV RSVGQGAA LKGEKRSGLRVHARTGLPCPVCGDTVREVS
Sbjct 199 SEEQLAALHDAVVSVLTDAVSRSVGQGAATLKGEKRSGLRVHARTGLPCPVCGDTVREVS 258
Query 130 FADKSFQYCPTCQTGGKALADRRMSRLLK 158
FADKSFQYC TCQTGGK LADRRMSRLLK
Sbjct 259 FADKSFQYCATCQTGGKVLADRRMSRLLK 287
>gi|120405833|ref|YP_955662.1| DNA-formamidopyrimidine glycosylase [Mycobacterium vanbaalenii
PYR-1]
gi|119958651|gb|ABM15656.1| DNA-formamidopyrimidine glycosylase [Mycobacterium vanbaalenii
PYR-1]
Length=297
Score = 256 bits (654), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 126/154 (82%), Positives = 136/154 (89%), Gaps = 0/154 (0%)
Query 5 PQPRALGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFA 64
PQ +LGPDAL ++ LA +L G +GRIKTVITDQKVIAGIGNAYSDEILHVAK+SPFA
Sbjct 144 PQIASLGPDALSLTGQALAEVLGGQSGRIKTVITDQKVIAGIGNAYSDEILHVAKLSPFA 203
Query 65 TAGKLSGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPVCGDT 124
TA KL+ +QL LH+AM SVL+DAV RSVGQ AA LKGEKRSGLRVHARTGLPCPVCGDT
Sbjct 204 TANKLTPSQLVTLHDAMISVLTDAVTRSVGQQAATLKGEKRSGLRVHARTGLPCPVCGDT 263
Query 125 VREVSFADKSFQYCPTCQTGGKALADRRMSRLLK 158
VREVSFADKSFQYCPTCQTGGK LADRRMSRLLK
Sbjct 264 VREVSFADKSFQYCPTCQTGGKVLADRRMSRLLK 297
>gi|333989530|ref|YP_004522144.1| formamidopyrimidine-DNA glycosylase [Mycobacterium sp. JDM601]
gi|333485498|gb|AEF34890.1| formamidopyrimidine-DNA glycosylase [Mycobacterium sp. JDM601]
Length=287
Score = 256 bits (653), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 122/149 (82%), Positives = 134/149 (90%), Gaps = 0/149 (0%)
Query 10 LGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFATAGKL 69
LGPDAL+V+ D+L LL GNTGRIKTVITDQKV+AGIGNAYSDEILH A++SPFATA KL
Sbjct 139 LGPDALEVTADELVALLTGNTGRIKTVITDQKVLAGIGNAYSDEILHTARLSPFATAAKL 198
Query 70 SGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPVCGDTVREVS 129
S Q+ LH+AM +VL+DAV RSVGQ AA LKGEKRSG+RVHARTGLPCPVCGDTVRE+S
Sbjct 199 SDEQVAALHQAMQAVLADAVARSVGQQAATLKGEKRSGMRVHARTGLPCPVCGDTVREIS 258
Query 130 FADKSFQYCPTCQTGGKALADRRMSRLLK 158
FADKSFQYCPTCQTGGK LADRRMSRLLK
Sbjct 259 FADKSFQYCPTCQTGGKVLADRRMSRLLK 287
>gi|118619547|ref|YP_907879.1| formamidopyrimidine-DNA glycosylase [Mycobacterium ulcerans Agy99]
gi|118571657|gb|ABL06408.1| formamidopyrimidine-DNA glycosylase [Mycobacterium ulcerans Agy99]
Length=287
Score = 251 bits (640), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 123/149 (83%), Positives = 133/149 (90%), Gaps = 0/149 (0%)
Query 10 LGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFATAGKL 69
LGPDAL++ ++LAG+L +TGRIKTV+TDQKVIAGIGNAYSDEILHVAKISPFATA KL
Sbjct 139 LGPDALELGPEELAGVLGPHTGRIKTVMTDQKVIAGIGNAYSDEILHVAKISPFATAAKL 198
Query 70 SGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPVCGDTVREVS 129
S QL LH+A+ SVL+DAV RSVGQGAA LKGEKRSGLRVHARTGLPCPVCGDTVREVS
Sbjct 199 SEEQLAALHDAVVSVLTDAVSRSVGQGAATLKGEKRSGLRVHARTGLPCPVCGDTVREVS 258
Query 130 FADKSFQYCPTCQTGGKALADRRMSRLLK 158
FADKSFQYC TCQTGGK L RRMSRLLK
Sbjct 259 FADKSFQYCATCQTGGKVLPHRRMSRLLK 287
>gi|342860552|ref|ZP_08717203.1| DNA-formamidopyrimidine glycosylase [Mycobacterium colombiense
CECT 3035]
gi|342132207|gb|EGT85448.1| DNA-formamidopyrimidine glycosylase [Mycobacterium colombiense
CECT 3035]
Length=287
Score = 251 bits (640), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 135/157 (86%), Positives = 141/157 (90%), Gaps = 0/157 (0%)
Query 2 AGTPQPRALGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKIS 61
A P ALGPDALD+ D LA +L+GNTGRIKTVITDQKVIAGIGNAYSDEILHVA+IS
Sbjct 131 AQVPGIAALGPDALDLDADALADVLSGNTGRIKTVITDQKVIAGIGNAYSDEILHVARIS 190
Query 62 PFATAGKLSGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPVC 121
PFATAGKLS AQL LH+AM SVL+DAV RSVGQGAA LKGEKRSGLRVHARTGLPCPVC
Sbjct 191 PFATAGKLSDAQLATLHDAMVSVLTDAVSRSVGQGAATLKGEKRSGLRVHARTGLPCPVC 250
Query 122 GDTVREVSFADKSFQYCPTCQTGGKALADRRMSRLLK 158
GDTVREVSFADKSFQYCPTCQTGGK LADRRMSRLLK
Sbjct 251 GDTVREVSFADKSFQYCPTCQTGGKILADRRMSRLLK 287
>gi|108801300|ref|YP_641497.1| DNA-formamidopyrimidine glycosylase [Mycobacterium sp. MCS]
gi|119870451|ref|YP_940403.1| DNA-formamidopyrimidine glycosylase [Mycobacterium sp. KMS]
gi|126437281|ref|YP_001072972.1| DNA-formamidopyrimidine glycosylase [Mycobacterium sp. JLS]
gi|108771719|gb|ABG10441.1| DNA-formamidopyrimidine glycosylase [Mycobacterium sp. MCS]
gi|119696540|gb|ABL93613.1| DNA-formamidopyrimidine glycosylase [Mycobacterium sp. KMS]
gi|126237081|gb|ABO00482.1| DNA-formamidopyrimidine glycosylase [Mycobacterium sp. JLS]
Length=287
Score = 249 bits (636), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 120/150 (80%), Positives = 135/150 (90%), Gaps = 0/150 (0%)
Query 9 ALGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFATAGK 68
ALGPDAL+++ D+L LL+ +GRIKTVITDQKV+AGIGNAYSDEILHVA++SPFATA K
Sbjct 138 ALGPDALELTADELGVLLSKQSGRIKTVITDQKVLAGIGNAYSDEILHVAQLSPFATANK 197
Query 69 LSGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPVCGDTVREV 128
L+ Q+ LH+AM SVL+DAV RSVGQ AA LKGEKRSGLRVHARTGLPCPVCGDTVREV
Sbjct 198 LTPEQVATLHDAMLSVLTDAVSRSVGQQAATLKGEKRSGLRVHARTGLPCPVCGDTVREV 257
Query 129 SFADKSFQYCPTCQTGGKALADRRMSRLLK 158
SFADKSFQYCPTCQTGG+ LADRR+SRLLK
Sbjct 258 SFADKSFQYCPTCQTGGRVLADRRLSRLLK 287
>gi|169628133|ref|YP_001701782.1| putative formamidopyrimidine-DNA glycosylase [Mycobacterium abscessus
ATCC 19977]
gi|169240100|emb|CAM61128.1| Putative formamidopyrimidine-DNA glycosylase [Mycobacterium abscessus]
Length=287
Score = 247 bits (630), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 120/157 (77%), Positives = 133/157 (85%), Gaps = 0/157 (0%)
Query 2 AGTPQPRALGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKIS 61
A PQ +LGPDAL ++ D LA +LAG T R+K VITDQ+VI+GIGNAYSDEILHVAK+S
Sbjct 131 AAVPQIASLGPDALSLTADGLADILAGTTARLKNVITDQRVISGIGNAYSDEILHVAKLS 190
Query 62 PFATAGKLSGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPVC 121
PFA+ LS QLT L+EAM SVL+DAV RSVGQ AA LKGEKRSGLRVHAR G+PCPVC
Sbjct 191 PFASGKTLSEGQLTALYEAMQSVLTDAVERSVGQQAATLKGEKRSGLRVHARAGMPCPVC 250
Query 122 GDTVREVSFADKSFQYCPTCQTGGKALADRRMSRLLK 158
GD VREVSFADKSFQYCPTCQTGGK LADRR+SRLLK
Sbjct 251 GDVVREVSFADKSFQYCPTCQTGGKVLADRRLSRLLK 287
>gi|145222442|ref|YP_001133120.1| DNA-formamidopyrimidine glycosylase [Mycobacterium gilvum PYR-GCK]
gi|315442889|ref|YP_004075768.1| formamidopyrimidine-DNA glycosylase [Mycobacterium sp. Spyr1]
gi|145214928|gb|ABP44332.1| DNA-formamidopyrimidine glycosylase [Mycobacterium gilvum PYR-GCK]
gi|315261192|gb|ADT97933.1| formamidopyrimidine-DNA glycosylase [Mycobacterium sp. Spyr1]
Length=287
Score = 240 bits (613), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 118/154 (77%), Positives = 132/154 (86%), Gaps = 0/154 (0%)
Query 5 PQPRALGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFA 64
PQ +LGPDAL ++ +L+G +GRIKTVITDQKVI+GIGNAYSDEILHVA++SPFA
Sbjct 134 PQIASLGPDALSLTLPAFTEMLSGESGRIKTVITDQKVISGIGNAYSDEILHVARLSPFA 193
Query 65 TAGKLSGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPVCGDT 124
TA KL+ AQ L++AM +VL+DAV RSVGQ AA LKGEKRSGLRVHARTGLPCPVC DT
Sbjct 194 TANKLTEAQRADLYDAMITVLTDAVTRSVGQQAATLKGEKRSGLRVHARTGLPCPVCVDT 253
Query 125 VREVSFADKSFQYCPTCQTGGKALADRRMSRLLK 158
VREVSFADKSFQYC TCQTGGK LADRRMSRLLK
Sbjct 254 VREVSFADKSFQYCATCQTGGKVLADRRMSRLLK 287
>gi|331694040|ref|YP_004330279.1| DNA-formamidopyrimidine glycosylase [Pseudonocardia dioxanivorans
CB1190]
gi|326948729|gb|AEA22426.1| DNA-formamidopyrimidine glycosylase [Pseudonocardia dioxanivorans
CB1190]
Length=291
Score = 239 bits (609), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 114/149 (77%), Positives = 131/149 (88%), Gaps = 0/149 (0%)
Query 10 LGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFATAGKL 69
LGPDAL +S D+LA LLAG+T RIKT+I DQK IAGIGNAYSDEILH A++SP+A +G+L
Sbjct 143 LGPDALALSRDELAELLAGHTERIKTLIVDQKTIAGIGNAYSDEILHTARLSPYAVSGRL 202
Query 70 SGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPVCGDTVREVS 129
QL L+EAM +VL+DAV RSVGQGAA LKGEKRSGLRVHARTGLPCPVCGDTVREVS
Sbjct 203 RPEQLDALYEAMRTVLTDAVERSVGQGAAELKGEKRSGLRVHARTGLPCPVCGDTVREVS 262
Query 130 FADKSFQYCPTCQTGGKALADRRMSRLLK 158
FA++SFQYCP CQTGGK LADRR+SRL++
Sbjct 263 FAERSFQYCPGCQTGGKPLADRRLSRLVR 291
>gi|258650476|ref|YP_003199632.1| DNA-(apurinic or apyrimidinic site) lyase [Nakamurella multipartita
DSM 44233]
gi|258553701|gb|ACV76643.1| DNA-(apurinic or apyrimidinic site) lyase [Nakamurella multipartita
DSM 44233]
Length=294
Score = 227 bits (579), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 111/149 (75%), Positives = 128/149 (86%), Gaps = 0/149 (0%)
Query 10 LGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFATAGKL 69
LGPDALD+ LA +LA TGRIK V+TDQ+VIAG+GNAYSDEILH A++SPFATA KL
Sbjct 146 LGPDALDLDRAALAQVLATQTGRIKNVLTDQRVIAGVGNAYSDEILHTARLSPFATAAKL 205
Query 70 SGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPVCGDTVREVS 129
S +L L++A+A+VL+DAV RSVG AA LKGEKR+GLRVHARTGLPCPVCGD V EVS
Sbjct 206 SPDELDRLYDALATVLTDAVLRSVGGQAARLKGEKRTGLRVHARTGLPCPVCGDVVAEVS 265
Query 130 FADKSFQYCPTCQTGGKALADRRMSRLLK 158
FAD+SFQYCPTCQTGGK LADRR+SRL+K
Sbjct 266 FADRSFQYCPTCQTGGKKLADRRLSRLVK 294
>gi|325003039|ref|ZP_08124151.1| DNA-formamidopyrimidine glycosylase [Pseudonocardia sp. P1]
Length=292
Score = 224 bits (572), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 108/149 (73%), Positives = 128/149 (86%), Gaps = 0/149 (0%)
Query 10 LGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFATAGKL 69
LGPDAL+++ L LL G+T R+KT++TDQ +AGIGNAYSDEILH A++SP+ATAG+L
Sbjct 144 LGPDALELTRPGLDELLDGDTRRLKTLVTDQSTVAGIGNAYSDEILHTARLSPYATAGRL 203
Query 70 SGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPVCGDTVREVS 129
+ Q L EA+ VL+DAV RSVGQGAA LKGEKRSGLRVHARTGLPCPVCGDTVREVS
Sbjct 204 TTEQRDALFEAVHGVLADAVGRSVGQGAAELKGEKRSGLRVHARTGLPCPVCGDTVREVS 263
Query 130 FADKSFQYCPTCQTGGKALADRRMSRLLK 158
FA++SFQYCPTCQTGGK LADRR+SRL++
Sbjct 264 FAERSFQYCPTCQTGGKPLADRRLSRLVR 292
>gi|111019239|ref|YP_702211.1| DNA-formamidopyrimidine glycosylase [Rhodococcus jostii RHA1]
gi|110818769|gb|ABG94053.1| DNA-formamidopyrimidine glycosylase [Rhodococcus jostii RHA1]
Length=288
Score = 223 bits (568), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 107/149 (72%), Positives = 124/149 (84%), Gaps = 0/149 (0%)
Query 10 LGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFATAGKL 69
LGPDAL V+ + A LL+ + RIK + DQ ++AG+GNAYSDEILH AKISPFAT+ L
Sbjct 140 LGPDALAVTEPEFAALLSTTSARIKNALVDQSLLAGVGNAYSDEILHTAKISPFATSRTL 199
Query 70 SGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPVCGDTVREVS 129
Q+ L++AM SVLSDAV+RS+GQ AA LKGEKRSG+RVHARTGLPCPVCGDT+REVS
Sbjct 200 PEDQVHVLYDAMRSVLSDAVQRSLGQDAARLKGEKRSGMRVHARTGLPCPVCGDTIREVS 259
Query 130 FADKSFQYCPTCQTGGKALADRRMSRLLK 158
FA+KSFQYC TCQTGGK LADRRMSRLLK
Sbjct 260 FAEKSFQYCATCQTGGKVLADRRMSRLLK 288
>gi|343927235|ref|ZP_08766713.1| putative DNA glycosylase [Gordonia alkanivorans NBRC 16433]
gi|343762852|dbj|GAA13639.1| putative DNA glycosylase [Gordonia alkanivorans NBRC 16433]
Length=301
Score = 223 bits (568), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 105/149 (71%), Positives = 124/149 (84%), Gaps = 0/149 (0%)
Query 10 LGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFATAGKL 69
LGPDAL+++ + A +LAG TGR+K V+TDQ IAGIGNAYSDEILH A++SPFA++ L
Sbjct 153 LGPDALELTEEHFAEILAGTTGRVKNVLTDQHTIAGIGNAYSDEILHTARLSPFASSKTL 212
Query 70 SGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPVCGDTVREVS 129
Q++ L++AM +VL+DA R GQ A LK EKR+GLRVHARTGLPCPVCGDTVREVS
Sbjct 213 KPDQVSALYDAMRAVLTDATGRLEGQTVARLKSEKRTGLRVHARTGLPCPVCGDTVREVS 272
Query 130 FADKSFQYCPTCQTGGKALADRRMSRLLK 158
FAD+SFQYCPTCQTGGK LADRRMSRLLK
Sbjct 273 FADRSFQYCPTCQTGGKVLADRRMSRLLK 301
>gi|226361374|ref|YP_002779152.1| DNA glycosylase [Rhodococcus opacus B4]
gi|226239859|dbj|BAH50207.1| putative DNA glycosylase [Rhodococcus opacus B4]
Length=288
Score = 223 bits (567), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 107/149 (72%), Positives = 123/149 (83%), Gaps = 0/149 (0%)
Query 10 LGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFATAGKL 69
LGPDAL V+ + A LL+ + RIK + DQ ++AG+GNAYSDEILH AKISPFAT+ L
Sbjct 140 LGPDALAVTEPEFAALLSTTSARIKNALVDQSLLAGVGNAYSDEILHTAKISPFATSRTL 199
Query 70 SGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPVCGDTVREVS 129
Q+ L++AM SVL+DAV RS+GQ AA LKGEKRSG+RVHARTGLPCPVCGDTVREVS
Sbjct 200 PEDQVHVLYDAMRSVLTDAVERSLGQDAARLKGEKRSGMRVHARTGLPCPVCGDTVREVS 259
Query 130 FADKSFQYCPTCQTGGKALADRRMSRLLK 158
FA+KSFQYC TCQTGGK LADRRMSRLLK
Sbjct 260 FAEKSFQYCATCQTGGKVLADRRMSRLLK 288
>gi|262201295|ref|YP_003272503.1| DNA-formamidopyrimidine glycosylase [Gordonia bronchialis DSM
43247]
gi|262084642|gb|ACY20610.1| DNA-formamidopyrimidine glycosylase [Gordonia bronchialis DSM
43247]
Length=295
Score = 221 bits (564), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 105/149 (71%), Positives = 121/149 (82%), Gaps = 0/149 (0%)
Query 10 LGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFATAGKL 69
LGPD L +S + +LA GRIK V+ DQ+V+AGIGNAYSDEILH A++SPFATA L
Sbjct 147 LGPDVLSLSVSEFGAILAQTAGRIKNVLADQRVMAGIGNAYSDEILHTARLSPFATAKSL 206
Query 70 SGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPVCGDTVREVS 129
+ Q++ L++AM SVL+DA R GQ A LK EKR+GLRVHARTGLPCPVCGDTVREVS
Sbjct 207 TEEQVSTLYDAMRSVLADATGRLEGQTVARLKSEKRTGLRVHARTGLPCPVCGDTVREVS 266
Query 130 FADKSFQYCPTCQTGGKALADRRMSRLLK 158
FAD+SFQYCPTCQTGGK LADRRMSRLLK
Sbjct 267 FADRSFQYCPTCQTGGKVLADRRMSRLLK 295
>gi|300782065|ref|YP_003762356.1| formamidopyrimidine-DNA glycosylase [Amycolatopsis mediterranei
U32]
gi|299791579|gb|ADJ41954.1| formamidopyrimidine-DNA glycosylase [Amycolatopsis mediterranei
U32]
gi|340523422|gb|AEK38627.1| DNA-formamidopyrimidine glycosylase [Amycolatopsis mediterranei
S699]
Length=286
Score = 221 bits (563), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 107/149 (72%), Positives = 119/149 (80%), Gaps = 0/149 (0%)
Query 10 LGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFATAGKL 69
LGPDAL V L L AG R+K +TDQ ++AGIGNAYSDEI+H AK+SP+AT GKL
Sbjct 138 LGPDALAVDAAQLRELFAGKNTRLKWALTDQSLLAGIGNAYSDEIMHRAKLSPYATIGKL 197
Query 70 SGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPVCGDTVREVS 129
L L EA+ + +DAV RSVGQ AA LKGEKRSGLRVHARTGLPCPVCGDT+RE+S
Sbjct 198 DEGALETLAEAIHDIETDAVERSVGQKAARLKGEKRSGLRVHARTGLPCPVCGDTIREIS 257
Query 130 FADKSFQYCPTCQTGGKALADRRMSRLLK 158
FADKSFQYCPTCQTGGK LADRRMSRLLK
Sbjct 258 FADKSFQYCPTCQTGGKPLADRRMSRLLK 286
>gi|54026994|ref|YP_121236.1| putative formamidopyrimidine-DNA glycosylase [Nocardia farcinica
IFM 10152]
gi|54018502|dbj|BAD59872.1| putative formamidopyrimidine-DNA glycosylase [Nocardia farcinica
IFM 10152]
Length=289
Score = 221 bits (563), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 106/149 (72%), Positives = 122/149 (82%), Gaps = 0/149 (0%)
Query 10 LGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFATAGKL 69
LGPDAL+VS A LL G + R+KT + DQ ++AGIGNAYSDEILH AKISPFA L
Sbjct 141 LGPDALEVSEPQFAELLHGTSQRLKTALVDQALLAGIGNAYSDEILHTAKISPFANTKTL 200
Query 70 SGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPVCGDTVREVS 129
++ L+ AM +VL+DAV+RSVGQ AA LKGEKRSG+RVHARTG PCPVCGDTVREVS
Sbjct 201 PAEKIAELYAAMRAVLTDAVQRSVGQDAARLKGEKRSGMRVHARTGQPCPVCGDTVREVS 260
Query 130 FADKSFQYCPTCQTGGKALADRRMSRLLK 158
+A++SFQYCPTCQTGGK LADRRMSRLLK
Sbjct 261 YAERSFQYCPTCQTGGKVLADRRMSRLLK 289
>gi|326383692|ref|ZP_08205377.1| DNA-formamidopyrimidine glycosylase [Gordonia neofelifaecis NRRL
B-59395]
gi|326197456|gb|EGD54645.1| DNA-formamidopyrimidine glycosylase [Gordonia neofelifaecis NRRL
B-59395]
Length=294
Score = 218 bits (554), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 103/150 (69%), Positives = 122/150 (82%), Gaps = 0/150 (0%)
Query 9 ALGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFATAGK 68
+LGPD L +S D+ +LAG+T RIK +ITDQ+VI+G+GNAYSDEILH A++SPFAT+
Sbjct 145 SLGPDVLGLSRDEFGAILAGSTARIKNLITDQRVISGVGNAYSDEILHTARLSPFATSKS 204
Query 69 LSGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPVCGDTVREV 128
+S + L+EA SVL A+ R GQ A LK EKR+GLRVHARTG+PCPVCGDTVREV
Sbjct 205 ISDDHVDDLYEATRSVLLGAIERLEGQEVARLKSEKRTGLRVHARTGMPCPVCGDTVREV 264
Query 129 SFADKSFQYCPTCQTGGKALADRRMSRLLK 158
SFAD+SFQYCPTCQTGGK LADRRMSRLLK
Sbjct 265 SFADRSFQYCPTCQTGGKVLADRRMSRLLK 294
>gi|312138559|ref|YP_004005895.1| DNA-formamidopyrimidine glycosylase [Rhodococcus equi 103S]
gi|325676377|ref|ZP_08156056.1| DNA-formamidopyrimidine glycosylase [Rhodococcus equi ATCC 33707]
gi|311887898|emb|CBH47210.1| DNA-formamidopyrimidine glycosylase [Rhodococcus equi 103S]
gi|325552938|gb|EGD22621.1| DNA-formamidopyrimidine glycosylase [Rhodococcus equi ATCC 33707]
Length=288
Score = 218 bits (554), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 103/149 (70%), Positives = 124/149 (84%), Gaps = 0/149 (0%)
Query 10 LGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFATAGKL 69
LGPDAL+V+ +LAG T RIKT + DQ ++AGIGNAYSDEILH A++SPFAT KL
Sbjct 140 LGPDALEVTRPQFGEILAGTTSRIKTALVDQSLLAGIGNAYSDEILHAARLSPFATTSKL 199
Query 70 SGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPVCGDTVREVS 129
+ ++ L++AM + LSDAV RSVGQ AA LKGEKR+G+ VHARTG+PCPVCGDTVREV+
Sbjct 200 APDEVDRLYDAMRAELSDAVERSVGQEAARLKGEKRAGMTVHARTGMPCPVCGDTVREVA 259
Query 130 FADKSFQYCPTCQTGGKALADRRMSRLLK 158
+A++SFQYCPTCQTGGK LADRRMSRLLK
Sbjct 260 YAERSFQYCPTCQTGGKILADRRMSRLLK 288
>gi|302531490|ref|ZP_07283832.1| formamidopyrimidine-DNA glycosylase [Streptomyces sp. AA4]
gi|302440385|gb|EFL12201.1| formamidopyrimidine-DNA glycosylase [Streptomyces sp. AA4]
Length=286
Score = 217 bits (553), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 107/149 (72%), Positives = 117/149 (79%), Gaps = 0/149 (0%)
Query 10 LGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFATAGKL 69
LGPDAL V L L G R+K +TDQ +IAGIGNAYSDEI+H AK+SP+AT GKL
Sbjct 138 LGPDALAVDASQLRELFQGKGTRLKWALTDQSLIAGIGNAYSDEIMHRAKLSPYATVGKL 197
Query 70 SGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPVCGDTVREVS 129
L L EA+ V +DAV RSVGQ AA LKGEKRSGLRVHARTGLPCPVCGDT+RE+S
Sbjct 198 DEGALEVLAEAIREVETDAVSRSVGQKAARLKGEKRSGLRVHARTGLPCPVCGDTIREIS 257
Query 130 FADKSFQYCPTCQTGGKALADRRMSRLLK 158
FADKSFQYC TCQTGGK LADRRMSRLLK
Sbjct 258 FADKSFQYCATCQTGGKPLADRRMSRLLK 286
>gi|229495049|ref|ZP_04388795.1| DNA-formamidopyrimidine glycosylase [Rhodococcus erythropolis
SK121]
gi|229317980|gb|EEN83855.1| DNA-formamidopyrimidine glycosylase [Rhodococcus erythropolis
SK121]
Length=288
Score = 216 bits (550), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 102/149 (69%), Positives = 121/149 (82%), Gaps = 0/149 (0%)
Query 10 LGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFATAGKL 69
LGPDA+ V+ + A +L G + RIK I DQ +IAGIGNAYSDEILH AK+SPFAT+ +L
Sbjct 140 LGPDAMAVTEAEFAQILGGTSARIKNSIVDQSLIAGIGNAYSDEILHTAKLSPFATSSRL 199
Query 70 SGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPVCGDTVREVS 129
+ Q++ L+ M S L+DA+ RS GQ AA LKGEKRSG+RVHARTGLPCPVCGD VREVS
Sbjct 200 TPDQISTLYAVMRSTLADAIERSEGQDAARLKGEKRSGMRVHARTGLPCPVCGDVVREVS 259
Query 130 FADKSFQYCPTCQTGGKALADRRMSRLLK 158
FA++SFQYC TCQTGGK LADRRMS+LLK
Sbjct 260 FAERSFQYCATCQTGGKPLADRRMSKLLK 288
>gi|226307944|ref|YP_002767904.1| DNA glycosylase [Rhodococcus erythropolis PR4]
gi|226187061|dbj|BAH35165.1| putative DNA glycosylase [Rhodococcus erythropolis PR4]
Length=288
Score = 216 bits (550), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 101/149 (68%), Positives = 121/149 (82%), Gaps = 0/149 (0%)
Query 10 LGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFATAGKL 69
LGPDA+ V+ + A +L G + RIK I DQ +IAGIGNAYSDEILH A++SPFAT+ +L
Sbjct 140 LGPDAMAVTEAEFAEILGGTSARIKNSIVDQSLIAGIGNAYSDEILHTARLSPFATSSRL 199
Query 70 SGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPVCGDTVREVS 129
+ Q++ L+ M S L+DA+ RS GQ AA LKGEKRSG+RVHARTGLPCPVCGD VREVS
Sbjct 200 TPEQISTLYAVMRSTLADAIERSEGQDAARLKGEKRSGMRVHARTGLPCPVCGDVVREVS 259
Query 130 FADKSFQYCPTCQTGGKALADRRMSRLLK 158
FA++SFQYC TCQTGGK LADRRMS+LLK
Sbjct 260 FAERSFQYCATCQTGGKPLADRRMSKLLK 288
>gi|291008458|ref|ZP_06566431.1| formamidopyrimidine-DNA glycosylase [Saccharopolyspora erythraea
NRRL 2338]
Length=284
Score = 214 bits (545), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 102/149 (69%), Positives = 119/149 (80%), Gaps = 0/149 (0%)
Query 10 LGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFATAGKL 69
LGPDAL + + L +L+G T RIKTV+TDQ +IAGIGNAYSDEILH AK+SP+ATAG+L
Sbjct 136 LGPDALSLDVEGLTAVLSGRTERIKTVLTDQSMIAGIGNAYSDEILHAAKLSPYATAGRL 195
Query 70 SGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPVCGDTVREVS 129
+ LH M +L+DAV RS+ Q AA LK EKRSG+RVH RTGLPCPVCGD VREVS
Sbjct 196 DADAVERLHATMREILTDAVERSLKQDAARLKAEKRSGMRVHGRTGLPCPVCGDKVREVS 255
Query 130 FADKSFQYCPTCQTGGKALADRRMSRLLK 158
FAD+S QYC TCQTGG+ LADRR+SRLLK
Sbjct 256 FADRSLQYCATCQTGGRPLADRRLSRLLK 284
>gi|134096732|ref|YP_001102393.1| formamidopyrimidine-DNA glycosylase [Saccharopolyspora erythraea
NRRL 2338]
gi|133909355|emb|CAL99467.1| formamidopyrimidine-DNA glycosylase [Saccharopolyspora erythraea
NRRL 2338]
Length=275
Score = 214 bits (544), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 102/149 (69%), Positives = 119/149 (80%), Gaps = 0/149 (0%)
Query 10 LGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFATAGKL 69
LGPDAL + + L +L+G T RIKTV+TDQ +IAGIGNAYSDEILH AK+SP+ATAG+L
Sbjct 127 LGPDALSLDVEGLTAVLSGRTERIKTVLTDQSMIAGIGNAYSDEILHAAKLSPYATAGRL 186
Query 70 SGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPVCGDTVREVS 129
+ LH M +L+DAV RS+ Q AA LK EKRSG+RVH RTGLPCPVCGD VREVS
Sbjct 187 DADAVERLHATMREILTDAVERSLKQDAARLKAEKRSGMRVHGRTGLPCPVCGDKVREVS 246
Query 130 FADKSFQYCPTCQTGGKALADRRMSRLLK 158
FAD+S QYC TCQTGG+ LADRR+SRLLK
Sbjct 247 FADRSLQYCATCQTGGRPLADRRLSRLLK 275
>gi|284988837|ref|YP_003407391.1| DNA-formamidopyrimidine glycosylase [Geodermatophilus obscurus
DSM 43160]
gi|284062082|gb|ADB73020.1| DNA-formamidopyrimidine glycosylase [Geodermatophilus obscurus
DSM 43160]
Length=284
Score = 211 bits (537), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 101/149 (68%), Positives = 121/149 (82%), Gaps = 0/149 (0%)
Query 10 LGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFATAGKL 69
LGPDAL V D LLAG +G++K +TDQ ++AGIGNAYSDEILH A++SPF A KL
Sbjct 136 LGPDALAVDRDTFVALLAGRSGQLKGALTDQTLLAGIGNAYSDEILHAARLSPFKMADKL 195
Query 70 SGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPVCGDTVREVS 129
S + L++AM + L++A++R VGQ AA +KGEKRSGL+VHARTGLPCPVCGDTVREVS
Sbjct 196 SDDEALRLYDAMRATLTEALQRQVGQEAATMKGEKRSGLQVHARTGLPCPVCGDTVREVS 255
Query 130 FADKSFQYCPTCQTGGKALADRRMSRLLK 158
FAD S QYCPTCQTGGK LADRRMS+LL+
Sbjct 256 FADTSLQYCPTCQTGGKPLADRRMSKLLR 284
>gi|296141029|ref|YP_003648272.1| DNA-formamidopyrimidine glycosylase [Tsukamurella paurometabola
DSM 20162]
gi|296029163|gb|ADG79933.1| DNA-formamidopyrimidine glycosylase [Tsukamurella paurometabola
DSM 20162]
Length=290
Score = 210 bits (534), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 101/149 (68%), Positives = 117/149 (79%), Gaps = 0/149 (0%)
Query 10 LGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFATAGKL 69
LGPDAL VS + +LAG+ ++K ++ DQ+ IAGIGNAYSDEILH AK+SPFA A L
Sbjct 142 LGPDALTVSRAEFGAILAGSRAQLKNLLRDQRTIAGIGNAYSDEILHTAKLSPFAGAKSL 201
Query 70 SGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPVCGDTVREVS 129
AQ L+ AM + L DAV RSVGQ A LK EKRSG++VH RTG PCPVCGDTVREVS
Sbjct 202 DEAQTDALYAAMHTELDDAVARSVGQHVATLKAEKRSGMKVHGRTGSPCPVCGDTVREVS 261
Query 130 FADKSFQYCPTCQTGGKALADRRMSRLLK 158
FAD+SFQYCPTCQTGGK LADRR+S+LLK
Sbjct 262 FADRSFQYCPTCQTGGKILADRRLSKLLK 290
>gi|159040486|ref|YP_001539739.1| DNA-(apurinic or apyrimidinic site) lyase [Salinispora arenicola
CNS-205]
gi|157919321|gb|ABW00749.1| DNA-(apurinic or apyrimidinic site) lyase [Salinispora arenicola
CNS-205]
Length=286
Score = 209 bits (533), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 103/149 (70%), Positives = 116/149 (78%), Gaps = 0/149 (0%)
Query 10 LGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFATAGKL 69
LGPDAL V A L G G++K V+TDQ V+AG+GNAYSDEILH A++SPFA +L
Sbjct 138 LGPDALAVDPATFAERLRGRRGQVKGVLTDQTVLAGVGNAYSDEILHTARLSPFALTSRL 197
Query 70 SGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPVCGDTVREVS 129
+ QL LH A VL +AV RSVGQ AA LKGEKRSGLRVHARTGLPCPVCGDTVREVS
Sbjct 198 TDDQLAALHTATRDVLGEAVSRSVGQRAAELKGEKRSGLRVHARTGLPCPVCGDTVREVS 257
Query 130 FADKSFQYCPTCQTGGKALADRRMSRLLK 158
FAD S QYCP CQTGGK LADRR+SRL++
Sbjct 258 FADSSLQYCPACQTGGKPLADRRLSRLIR 286
>gi|302870627|ref|YP_003839264.1| DNA-(apurinic or apyrimidinic site) lyase [Micromonospora aurantiaca
ATCC 27029]
gi|302573486|gb|ADL49688.1| DNA-(apurinic or apyrimidinic site) lyase [Micromonospora aurantiaca
ATCC 27029]
Length=286
Score = 209 bits (531), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 101/149 (68%), Positives = 117/149 (79%), Gaps = 0/149 (0%)
Query 10 LGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFATAGKL 69
LGPDAL+ A L G++K V+TDQ V+AG+GNAYSDEILH A++SPFA +L
Sbjct 138 LGPDALEADLPTFAERLRSRRGQVKGVLTDQSVLAGVGNAYSDEILHAARLSPFAITDRL 197
Query 70 SGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPVCGDTVREVS 129
+ QL LH A +VL DAVRRS+GQ AA LKGEKRSGL+VHAR GLPCPVCGDTVREVS
Sbjct 198 TDDQLAGLHAATRTVLGDAVRRSMGQRAAELKGEKRSGLKVHARKGLPCPVCGDTVREVS 257
Query 130 FADKSFQYCPTCQTGGKALADRRMSRLLK 158
FAD S QYCPTCQTGGK LADRR+SRL++
Sbjct 258 FADSSLQYCPTCQTGGKPLADRRLSRLVR 286
>gi|315506864|ref|YP_004085751.1| DNA-(apurinic or apyrimidinic site) lyase [Micromonospora sp.
L5]
gi|315413483|gb|ADU11600.1| DNA-(apurinic or apyrimidinic site) lyase [Micromonospora sp.
L5]
Length=286
Score = 208 bits (530), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 101/149 (68%), Positives = 117/149 (79%), Gaps = 0/149 (0%)
Query 10 LGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFATAGKL 69
LGPDAL+ A L G++K V+TDQ V+AG+GNAYSDEILH A++SPFA +L
Sbjct 138 LGPDALEADLPTFAERLRSRRGQVKGVLTDQSVLAGVGNAYSDEILHAARLSPFAITDRL 197
Query 70 SGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPVCGDTVREVS 129
+ QL LH A +VL DAVRRS+GQ AA LKGEKRSGL+VHAR GLPCPVCGDTVREVS
Sbjct 198 TDDQLAGLHAATRTVLGDAVRRSMGQRAAELKGEKRSGLKVHARKGLPCPVCGDTVREVS 257
Query 130 FADKSFQYCPTCQTGGKALADRRMSRLLK 158
FAD S QYCPTCQTGGK LADRR+SRL++
Sbjct 258 FADSSLQYCPTCQTGGKPLADRRLSRLVR 286
>gi|330470731|ref|YP_004408474.1| DNA-formamidopyrimidine glycosylase [Verrucosispora maris AB-18-032]
gi|328813702|gb|AEB47874.1| DNA-formamidopyrimidine glycosylase [Verrucosispora maris AB-18-032]
Length=286
Score = 208 bits (530), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 102/149 (69%), Positives = 116/149 (78%), Gaps = 0/149 (0%)
Query 10 LGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFATAGKL 69
LGPDAL AG L G++K V+TDQ V+AG+GNAYSDEILH AK+SPFA +L
Sbjct 138 LGPDALSADLAAFAGALRSRRGQLKGVLTDQAVLAGVGNAYSDEILHAAKLSPFALTDRL 197
Query 70 SGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPVCGDTVREVS 129
+ Q+ LH A VL DAV RS+GQ AA LKGEKRSGL+VHARTGLPCPVCGDTVREVS
Sbjct 198 TDDQMATLHAATRRVLGDAVTRSLGQRAAELKGEKRSGLKVHARTGLPCPVCGDTVREVS 257
Query 130 FADKSFQYCPTCQTGGKALADRRMSRLLK 158
FAD S QYCPTCQTGGK LADRR+SRL++
Sbjct 258 FADSSLQYCPTCQTGGKPLADRRLSRLVR 286
>gi|333919500|ref|YP_004493081.1| fomramidopyrimidine-DNA glycosylase [Amycolicicoccus subflavus
DQS3-9A1]
gi|333481721|gb|AEF40281.1| Formamidopyrimidine-DNA glycosylase [Amycolicicoccus subflavus
DQS3-9A1]
Length=289
Score = 208 bits (530), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 102/158 (65%), Positives = 122/158 (78%), Gaps = 0/158 (0%)
Query 1 VAGTPQPRALGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKI 60
+A Q LG DAL+++ +L+G L G++ R+KT +TDQ V++GIGNAYSDEILH+AK+
Sbjct 132 LAALHQIERLGTDALEITESELSGKLQGSSARLKTFLTDQTVLSGIGNAYSDEILHLAKL 191
Query 61 SPFATAGKLSGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPV 120
SPFA A LS LH A+ +VLSDAV R VG+ A LKGEKRSGLRVHARTGLPCP
Sbjct 192 SPFAQANSLSEEAAQNLHTAIYAVLSDAVTRCVGESVARLKGEKRSGLRVHARTGLPCPE 251
Query 121 CGDTVREVSFADKSFQYCPTCQTGGKALADRRMSRLLK 158
CG VREV++AD+SFQYC CQTGGK LADRRMSRLLK
Sbjct 252 CGAPVREVAYADRSFQYCAQCQTGGKVLADRRMSRLLK 289
>gi|145597000|ref|YP_001161297.1| DNA-(apurinic or apyrimidinic site) lyase [Salinispora tropica
CNB-440]
gi|145306337|gb|ABP56919.1| DNA-(apurinic or apyrimidinic site) lyase / Formamidopyrimidine-DNA
glycosylase [Salinispora tropica CNB-440]
Length=286
Score = 207 bits (528), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 102/149 (69%), Positives = 115/149 (78%), Gaps = 0/149 (0%)
Query 10 LGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFATAGKL 69
LGPDAL V A L G++K V+TDQ V+AG+GNAYSDEILH A++SPFA +L
Sbjct 138 LGPDALAVDPATFADRLRSRKGQVKGVLTDQTVLAGVGNAYSDEILHTARLSPFALTTRL 197
Query 70 SGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPVCGDTVREVS 129
+ QL LH A VL DAV RSVGQ AA LKGEKRSGLRVHARTGLPCPVCGDTVREVS
Sbjct 198 TDEQLATLHAATRDVLGDAVSRSVGQRAAELKGEKRSGLRVHARTGLPCPVCGDTVREVS 257
Query 130 FADKSFQYCPTCQTGGKALADRRMSRLLK 158
FAD S QYCP CQTGGK LADRR+SR+++
Sbjct 258 FADSSLQYCPGCQTGGKPLADRRLSRIVR 286
>gi|297155165|gb|ADI04877.1| formamidopyrimidine-DNA glycosylase [Streptomyces bingchenggensis
BCW-1]
Length=288
Score = 199 bits (505), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 99/151 (66%), Positives = 114/151 (76%), Gaps = 2/151 (1%)
Query 10 LGPDAL--DVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFATAG 67
LGPD L + ++ AGLL G RIK V+ DQ VIAGIGNAYSDEILH A++SP+ AG
Sbjct 138 LGPDPLAESFTLEEFAGLLRGVRHRIKGVLRDQSVIAGIGNAYSDEILHAARMSPYRLAG 197
Query 68 KLSGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPVCGDTVRE 127
L+ ++ L+EAM + L DAV RS+G A LK EKRSG+RVH RTG PCPVCGD VRE
Sbjct 198 DLTEEEVARLYEAMGATLRDAVERSLGPAARDLKAEKRSGMRVHGRTGQPCPVCGDMVRE 257
Query 128 VSFADKSFQYCPTCQTGGKALADRRMSRLLK 158
VSFAD S QYCPTCQTGGK LADRR+SRLLK
Sbjct 258 VSFADSSLQYCPTCQTGGKPLADRRLSRLLK 288
>gi|317508930|ref|ZP_07966566.1| formamidopyrimidine-DNA glycosylase domain-containing protein
[Segniliparus rugosus ATCC BAA-974]
gi|316252771|gb|EFV12205.1| formamidopyrimidine-DNA glycosylase domain-containing protein
[Segniliparus rugosus ATCC BAA-974]
Length=282
Score = 197 bits (501), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 101/157 (65%), Positives = 114/157 (73%), Gaps = 3/157 (1%)
Query 2 AGTPQPRALGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKIS 61
A P LGPDALD+ LAG+LAG T RIK V+ DQ +IAGIGNAYSDEIL AKIS
Sbjct 129 ADVPSVAKLGPDALDLDEAGLAGILAGTTARIKNVLVDQHLIAGIGNAYSDEILFAAKIS 188
Query 62 PFATAGKLSGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPVC 121
PF+ + K QL A+ VL +AV R+VGQ AA+LK EKR G+RVH RTG PC C
Sbjct 189 PFSPSDKTDPGQL---FPALRGVLLEAVERAVGQEAALLKAEKREGMRVHGRTGEPCSAC 245
Query 122 GDTVREVSFADKSFQYCPTCQTGGKALADRRMSRLLK 158
GD VREVSFAD+S+QYC TCQTGG LADRRMSRLLK
Sbjct 246 GDVVREVSFADRSWQYCATCQTGGHVLADRRMSRLLK 282
>gi|238061799|ref|ZP_04606508.1| DNA-(apurinic or apyrimidinic site) lyase [Micromonospora sp.
ATCC 39149]
gi|237883610|gb|EEP72438.1| DNA-(apurinic or apyrimidinic site) lyase [Micromonospora sp.
ATCC 39149]
Length=286
Score = 193 bits (491), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 92/149 (62%), Positives = 110/149 (74%), Gaps = 0/149 (0%)
Query 10 LGPDALDVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFATAGKL 69
LGPD L A + G++K V+ DQ V+AG+GNAYSDEILH A++SPFA +L
Sbjct 138 LGPDVLAADLPTFAARIRSRRGQVKGVLMDQAVLAGVGNAYSDEILHAARLSPFALTDRL 197
Query 70 SGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPVCGDTVREVS 129
+ Q+ LHE+ VL DA+ RS+G AA LKGEKRSGL VHAR GLPCP CGDTVREVS
Sbjct 198 TDDQVAALHESTRRVLGDALSRSLGHRAAELKGEKRSGLAVHARAGLPCPTCGDTVREVS 257
Query 130 FADKSFQYCPTCQTGGKALADRRMSRLLK 158
FAD S QYCPTCQTGGK LADRR+SR+++
Sbjct 258 FADSSLQYCPTCQTGGKPLADRRLSRIVR 286
>gi|345011400|ref|YP_004813754.1| Formamidopyrimidine-DNA glycosylase catalytic domain-containing
protein [Streptomyces violaceusniger Tu 4113]
gi|344037749|gb|AEM83474.1| Formamidopyrimidine-DNA glycosylase catalytic domain protein
[Streptomyces violaceusniger Tu 4113]
Length=288
Score = 191 bits (486), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 96/151 (64%), Positives = 111/151 (74%), Gaps = 2/151 (1%)
Query 10 LGPDALD--VSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFATAG 67
LGPD L+ + + AGLL G RIK V+ DQ VIAGIGNAYSDEILH A++SP+ A
Sbjct 138 LGPDPLEDSFTLEAFAGLLRGVRHRIKGVLRDQSVIAGIGNAYSDEILHAARMSPYRLAS 197
Query 68 KLSGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPVCGDTVRE 127
L+ ++ ++EAM + L AV RS G A LKGEKR G+RVH RTG PCPVCGDTVRE
Sbjct 198 DLTEEEIAGVYEAMGATLRSAVERSHGLAATDLKGEKRGGMRVHGRTGQPCPVCGDTVRE 257
Query 128 VSFADKSFQYCPTCQTGGKALADRRMSRLLK 158
VSF D S QYCPTCQTGGK LADRR+SRLLK
Sbjct 258 VSFRDSSLQYCPTCQTGGKPLADRRLSRLLK 288
>gi|290955721|ref|YP_003486903.1| formamidopyrimidine-DNA glycosylase [Streptomyces scabiei 87.22]
gi|260645247|emb|CBG68333.1| putative formamidopyrimidine-DNA glycosylase [Streptomyces scabiei
87.22]
Length=289
Score = 190 bits (482), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 94/151 (63%), Positives = 109/151 (73%), Gaps = 2/151 (1%)
Query 10 LGPDAL--DVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFATAG 67
LGPD L + AGLLAG +IK + DQ +IAGIGNAYSDEILH A++SPF
Sbjct 139 LGPDPLADEFDVTRFAGLLAGERRQIKGALRDQSLIAGIGNAYSDEILHAARMSPFRLTS 198
Query 68 KLSGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCPVCGDTVRE 127
L ++ LHEA+ + L++AV RS G A LK EK+SGLRVH R G PCPVCGDTVRE
Sbjct 199 SLKPEEIRHLHEALRTTLTEAVERSRGLAAGRLKAEKKSGLRVHGRAGEPCPVCGDTVRE 258
Query 128 VSFADKSFQYCPTCQTGGKALADRRMSRLLK 158
VSF+D S QYCPTCQTGGK LADRR+SRLLK
Sbjct 259 VSFSDSSLQYCPTCQTGGKPLADRRLSRLLK 289
Lambda K H
0.318 0.133 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 128907826664
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40