BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0948c
Length=105
Score E
Sequences producing significant alignments: (Bits) Value
gi|289744680|ref|ZP_06504058.1| conserved hypothetical protein [... 209 1e-52
gi|289555270|ref|ZP_06444480.1| conserved hypothetical protein [... 207 5e-52
gi|15608088|ref|NP_215463.1| hypothetical protein Rv0948c [Mycob... 206 1e-51
gi|289749472|ref|ZP_06508850.1| conserved hypothetical protein [... 204 3e-51
gi|253800025|ref|YP_003033026.1| hypothetical protein TBMG_03040... 204 5e-51
gi|167967810|ref|ZP_02550087.1| hypothetical protein MtubH3_0716... 175 3e-42
gi|254549929|ref|ZP_05140376.1| hypothetical protein Mtube_05608... 173 9e-42
gi|15826974|ref|NP_301237.1| hypothetical protein ML0151 [Mycoba... 152 2e-35
gi|118619543|ref|YP_907875.1| hypothetical protein MUL_4413 [Myc... 145 3e-33
gi|254819356|ref|ZP_05224357.1| hypothetical protein MintA_05493... 129 1e-28
gi|41406990|ref|NP_959826.1| hypothetical protein MAP0892c [Myco... 129 2e-28
gi|333989533|ref|YP_004522147.1| hypothetical protein JDM601_089... 122 2e-26
gi|118463684|ref|YP_880323.1| hypothetical protein MAV_1069 [Myc... 122 2e-26
gi|342860555|ref|ZP_08717206.1| hypothetical protein MCOL_16811 ... 120 5e-26
gi|108801295|ref|YP_641492.1| hypothetical protein Mmcs_4331 [My... 117 6e-25
gi|296169706|ref|ZP_06851324.1| chorismate mutase [Mycobacterium... 115 2e-24
gi|256380500|ref|YP_003104160.1| chorismate mutase [Actinosynnem... 114 4e-24
gi|240172873|ref|ZP_04751532.1| hypothetical protein MkanA1_2640... 114 7e-24
gi|145222450|ref|YP_001133128.1| chorismate mutase [Mycobacteriu... 111 4e-23
gi|300782727|ref|YP_003763018.1| chorismate mutase [Amycolatopsi... 108 3e-22
gi|333921243|ref|YP_004494824.1| Chorismate mutase [Amycolicicoc... 106 1e-21
gi|257054558|ref|YP_003132390.1| monofunctional chorismate mutas... 104 4e-21
gi|118469683|ref|YP_889773.1| chorismate mutase [Mycobacterium s... 104 4e-21
gi|120405824|ref|YP_955653.1| chorismate mutase [Mycobacterium v... 104 6e-21
gi|169628148|ref|YP_001701797.1| hypothetical protein MAB_1053c ... 103 9e-21
gi|226307920|ref|YP_002767880.1| chorismate mutase [Rhodococcus ... 99.8 1e-19
gi|38233431|ref|NP_939198.1| hypothetical protein DIP0834 [Coryn... 99.0 2e-19
gi|229495062|ref|ZP_04388808.1| chorismate mutase [Rhodococcus e... 98.2 4e-19
gi|111022535|ref|YP_705507.1| hypothetical protein RHA1_ro05569 ... 97.4 6e-19
gi|54026970|ref|YP_121212.1| hypothetical protein nfa49960 [Noca... 97.4 7e-19
gi|312138579|ref|YP_004005915.1| chorismate mutase [Rhodococcus ... 95.9 2e-18
gi|296141011|ref|YP_003648254.1| chorismate mutase [Tsukamurella... 94.4 6e-18
gi|300781706|ref|ZP_07091560.1| chorismate mutase [Corynebacteri... 92.8 1e-17
gi|227548289|ref|ZP_03978338.1| chorismate mutase [Corynebacteri... 92.0 3e-17
gi|21323619|dbj|BAB98246.1| Chorismate mutase [Corynebacterium g... 90.1 9e-17
gi|19552080|ref|NP_600082.1| hypothetical protein NCgl0819 [Cory... 90.1 9e-17
gi|302524113|ref|ZP_07276455.1| chorismate mutase [Streptomyces ... 89.7 1e-16
gi|227501453|ref|ZP_03931502.1| chorismate mutase [Corynebacteri... 89.4 2e-16
gi|324999174|ref|ZP_08120286.1| hypothetical protein PseP1_10436... 89.0 2e-16
gi|258651493|ref|YP_003200649.1| chorismate mutase [Nakamurella ... 89.0 2e-16
gi|227487770|ref|ZP_03918086.1| chorismate mutase [Corynebacteri... 88.6 3e-16
gi|25027485|ref|NP_737539.1| hypothetical protein CE0929 [Coryne... 88.2 3e-16
gi|262201307|ref|YP_003272515.1| chorismate mutase [Gordonia bro... 88.2 4e-16
gi|296118284|ref|ZP_06836865.1| chorismate mutase [Corynebacteri... 87.8 5e-16
gi|134103113|ref|YP_001108774.1| chorismate mutase [Saccharopoly... 87.4 6e-16
gi|255324816|ref|ZP_05365929.1| chorismate mutase [Corynebacteri... 87.4 6e-16
gi|213964912|ref|ZP_03393111.1| chorismate mutase [Corynebacteri... 87.0 8e-16
gi|227832629|ref|YP_002834336.1| chorismate mutase [Corynebacter... 86.7 1e-15
gi|68536651|ref|YP_251356.1| hypothetical protein jk1565 [Coryne... 86.7 1e-15
gi|326383699|ref|ZP_08205384.1| chorismate mutase [Gordonia neof... 86.3 1e-15
>gi|289744680|ref|ZP_06504058.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|308377556|ref|ZP_07479653.2| hypothetical protein TMIG_03504 [Mycobacterium tuberculosis SUMu009]
gi|13880538|gb|AAK45223.1| hypothetical protein MT0975 [Mycobacterium tuberculosis CDC1551]
gi|289685208|gb|EFD52696.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|308355382|gb|EFP44233.1| hypothetical protein TMIG_03504 [Mycobacterium tuberculosis SUMu009]
Length=217
Score = 209 bits (531), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 105/105 (100%), Positives = 105/105 (100%), Gaps = 0/105 (0%)
Query 1 MRPEPPHHENAELAAMNLEMLESQPVPEIDTLREEIDRLDAEILALVKRRAEVSKAIGKA 60
MRPEPPHHENAELAAMNLEMLESQPVPEIDTLREEIDRLDAEILALVKRRAEVSKAIGKA
Sbjct 113 MRPEPPHHENAELAAMNLEMLESQPVPEIDTLREEIDRLDAEILALVKRRAEVSKAIGKA 172
Query 61 RMASGGTRLVHSREMKVIERYSELGPDGKDLAILLLRLGRGRLGH 105
RMASGGTRLVHSREMKVIERYSELGPDGKDLAILLLRLGRGRLGH
Sbjct 173 RMASGGTRLVHSREMKVIERYSELGPDGKDLAILLLRLGRGRLGH 217
>gi|289555270|ref|ZP_06444480.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
605]
gi|289439902|gb|EFD22395.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
605]
gi|328459766|gb|AEB05189.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
4207]
Length=217
Score = 207 bits (526), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 104/105 (99%), Positives = 104/105 (99%), Gaps = 0/105 (0%)
Query 1 MRPEPPHHENAELAAMNLEMLESQPVPEIDTLREEIDRLDAEILALVKRRAEVSKAIGKA 60
MRPEPPHHENAELAAMNLEMLESQPVPEIDTLREEIDRLDAEILALVKRRAEVSKAIG A
Sbjct 113 MRPEPPHHENAELAAMNLEMLESQPVPEIDTLREEIDRLDAEILALVKRRAEVSKAIGTA 172
Query 61 RMASGGTRLVHSREMKVIERYSELGPDGKDLAILLLRLGRGRLGH 105
RMASGGTRLVHSREMKVIERYSELGPDGKDLAILLLRLGRGRLGH
Sbjct 173 RMASGGTRLVHSREMKVIERYSELGPDGKDLAILLLRLGRGRLGH 217
>gi|15608088|ref|NP_215463.1| hypothetical protein Rv0948c [Mycobacterium tuberculosis H37Rv]
gi|31792137|ref|NP_854630.1| hypothetical protein Mb0973c [Mycobacterium bovis AF2122/97]
gi|121636873|ref|YP_977096.1| hypothetical protein BCG_1002c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
37 more sequence titles
Length=105
Score = 206 bits (523), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 105/105 (100%), Positives = 105/105 (100%), Gaps = 0/105 (0%)
Query 1 MRPEPPHHENAELAAMNLEMLESQPVPEIDTLREEIDRLDAEILALVKRRAEVSKAIGKA 60
MRPEPPHHENAELAAMNLEMLESQPVPEIDTLREEIDRLDAEILALVKRRAEVSKAIGKA
Sbjct 1 MRPEPPHHENAELAAMNLEMLESQPVPEIDTLREEIDRLDAEILALVKRRAEVSKAIGKA 60
Query 61 RMASGGTRLVHSREMKVIERYSELGPDGKDLAILLLRLGRGRLGH 105
RMASGGTRLVHSREMKVIERYSELGPDGKDLAILLLRLGRGRLGH
Sbjct 61 RMASGGTRLVHSREMKVIERYSELGPDGKDLAILLLRLGRGRLGH 105
>gi|289749472|ref|ZP_06508850.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289690059|gb|EFD57488.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length=105
Score = 204 bits (519), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 104/105 (99%), Positives = 105/105 (100%), Gaps = 0/105 (0%)
Query 1 MRPEPPHHENAELAAMNLEMLESQPVPEIDTLREEIDRLDAEILALVKRRAEVSKAIGKA 60
MRPEPPHHENAELAAMNLEMLESQPVP+IDTLREEIDRLDAEILALVKRRAEVSKAIGKA
Sbjct 1 MRPEPPHHENAELAAMNLEMLESQPVPKIDTLREEIDRLDAEILALVKRRAEVSKAIGKA 60
Query 61 RMASGGTRLVHSREMKVIERYSELGPDGKDLAILLLRLGRGRLGH 105
RMASGGTRLVHSREMKVIERYSELGPDGKDLAILLLRLGRGRLGH
Sbjct 61 RMASGGTRLVHSREMKVIERYSELGPDGKDLAILLLRLGRGRLGH 105
>gi|253800025|ref|YP_003033026.1| hypothetical protein TBMG_03040 [Mycobacterium tuberculosis KZN
1435]
gi|289761083|ref|ZP_06520461.1| conserved hypothetical protein [Mycobacterium tuberculosis GM
1503]
gi|253321528|gb|ACT26131.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
1435]
gi|289708589|gb|EFD72605.1| conserved hypothetical protein [Mycobacterium tuberculosis GM
1503]
gi|344218774|gb|AEM99404.1| hypothetical protein MTCTRI2_0971 [Mycobacterium tuberculosis
CTRI-2]
Length=105
Score = 204 bits (518), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 104/105 (99%), Positives = 104/105 (99%), Gaps = 0/105 (0%)
Query 1 MRPEPPHHENAELAAMNLEMLESQPVPEIDTLREEIDRLDAEILALVKRRAEVSKAIGKA 60
MRPEPPHHENAELAAMNLEMLESQPVPEIDTLREEIDRLDAEILALVKRRAEVSKAIG A
Sbjct 1 MRPEPPHHENAELAAMNLEMLESQPVPEIDTLREEIDRLDAEILALVKRRAEVSKAIGTA 60
Query 61 RMASGGTRLVHSREMKVIERYSELGPDGKDLAILLLRLGRGRLGH 105
RMASGGTRLVHSREMKVIERYSELGPDGKDLAILLLRLGRGRLGH
Sbjct 61 RMASGGTRLVHSREMKVIERYSELGPDGKDLAILLLRLGRGRLGH 105
>gi|167967810|ref|ZP_02550087.1| hypothetical protein MtubH3_07167 [Mycobacterium tuberculosis
H37Ra]
gi|294996433|ref|ZP_06802124.1| hypothetical protein Mtub2_18499 [Mycobacterium tuberculosis
210]
gi|306775078|ref|ZP_07413415.1| hypothetical protein TMAG_00883 [Mycobacterium tuberculosis SUMu001]
27 more sequence titles
Length=90
Score = 175 bits (443), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 90/90 (100%), Positives = 90/90 (100%), Gaps = 0/90 (0%)
Query 16 MNLEMLESQPVPEIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREM 75
MNLEMLESQPVPEIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREM
Sbjct 1 MNLEMLESQPVPEIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREM 60
Query 76 KVIERYSELGPDGKDLAILLLRLGRGRLGH 105
KVIERYSELGPDGKDLAILLLRLGRGRLGH
Sbjct 61 KVIERYSELGPDGKDLAILLLRLGRGRLGH 90
>gi|254549929|ref|ZP_05140376.1| hypothetical protein Mtube_05608 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|297633470|ref|ZP_06951250.1| hypothetical protein MtubK4_05076 [Mycobacterium tuberculosis
KZN 4207]
gi|297730455|ref|ZP_06959573.1| hypothetical protein MtubKR_05156 [Mycobacterium tuberculosis
KZN R506]
gi|313657783|ref|ZP_07814663.1| hypothetical protein MtubKV_05151 [Mycobacterium tuberculosis
KZN V2475]
Length=90
Score = 173 bits (438), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 89/90 (99%), Positives = 89/90 (99%), Gaps = 0/90 (0%)
Query 16 MNLEMLESQPVPEIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREM 75
MNLEMLESQPVPEIDTLREEIDRLDAEILALVKRRAEVSKAIG ARMASGGTRLVHSREM
Sbjct 1 MNLEMLESQPVPEIDTLREEIDRLDAEILALVKRRAEVSKAIGTARMASGGTRLVHSREM 60
Query 76 KVIERYSELGPDGKDLAILLLRLGRGRLGH 105
KVIERYSELGPDGKDLAILLLRLGRGRLGH
Sbjct 61 KVIERYSELGPDGKDLAILLLRLGRGRLGH 90
>gi|15826974|ref|NP_301237.1| hypothetical protein ML0151 [Mycobacterium leprae TN]
gi|221229452|ref|YP_002502868.1| hypothetical protein MLBr_00151 [Mycobacterium leprae Br4923]
gi|13092521|emb|CAC29659.1| conserved hypothetical protein [Mycobacterium leprae]
gi|219932559|emb|CAR70244.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length=105
Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/93 (82%), Positives = 84/93 (91%), Gaps = 0/93 (0%)
Query 1 MRPEPPHHENAELAAMNLEMLESQPVPEIDTLREEIDRLDAEILALVKRRAEVSKAIGKA 60
MRPEPPHHENAEL MN E++E+ + +I+ LREEIDRLDA+ILA VKRRAEVS+AIGK
Sbjct 1 MRPEPPHHENAELTEMNTEVVEAPLLTDIEELREEIDRLDAQILATVKRRAEVSQAIGKV 60
Query 61 RMASGGTRLVHSREMKVIERYSELGPDGKDLAI 93
RMASGGTRLVHSREMKVIERYSELGPDGKDLAI
Sbjct 61 RMASGGTRLVHSREMKVIERYSELGPDGKDLAI 93
>gi|118619543|ref|YP_907875.1| hypothetical protein MUL_4413 [Mycobacterium ulcerans Agy99]
gi|183984525|ref|YP_001852816.1| hypothetical protein MMAR_4555 [Mycobacterium marinum M]
gi|118571653|gb|ABL06404.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
gi|183177851|gb|ACC42961.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=104
Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 75/93 (81%), Positives = 83/93 (90%), Gaps = 1/93 (1%)
Query 1 MRPEPPHHENAELAAMNLEMLESQPVPEIDTLREEIDRLDAEILALVKRRAEVSKAIGKA 60
MRPEPP HENAEL MN E ++++ +P ID LREEIDRLD EILA VKRRAEVS+AIGKA
Sbjct 1 MRPEPPPHENAELE-MNTETIDTEDLPSIDELREEIDRLDREILAAVKRRAEVSQAIGKA 59
Query 61 RMASGGTRLVHSREMKVIERYSELGPDGKDLAI 93
RMASGGTRLVH+REMKVIERYSELGP+GKDLAI
Sbjct 60 RMASGGTRLVHNREMKVIERYSELGPEGKDLAI 92
>gi|254819356|ref|ZP_05224357.1| hypothetical protein MintA_05493 [Mycobacterium intracellulare
ATCC 13950]
Length=90
Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/78 (84%), Positives = 70/78 (90%), Gaps = 0/78 (0%)
Query 16 MNLEMLESQPVPEIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREM 75
MN+E +E+Q +ID LR EIDRLDAEILA VKRR EVS+AIGKARMASGGTRLVHSREM
Sbjct 1 MNIETVEAQGATDIDDLRLEIDRLDAEILAAVKRRTEVSQAIGKARMASGGTRLVHSREM 60
Query 76 KVIERYSELGPDGKDLAI 93
KVIERYSELGPDGKDLAI
Sbjct 61 KVIERYSELGPDGKDLAI 78
>gi|41406990|ref|NP_959826.1| hypothetical protein MAP0892c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41395341|gb|AAS03209.1| hypothetical protein MAP_0892c [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=106
Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/94 (73%), Positives = 78/94 (83%), Gaps = 1/94 (1%)
Query 1 MRPEPPHHEN-AELAAMNLEMLESQPVPEIDTLREEIDRLDAEILALVKRRAEVSKAIGK 59
MRP+ P ++ AE A MN E ++ + +ID LR EIDRLDAEILA VKRR EVS+AIG+
Sbjct 1 MRPQSPDDDDDAESAEMNTETVDPREATDIDQLRREIDRLDAEILAAVKRRTEVSQAIGR 60
Query 60 ARMASGGTRLVHSREMKVIERYSELGPDGKDLAI 93
ARMASGGTRLVHSREMKVIERYSELGPDGKDLA+
Sbjct 61 ARMASGGTRLVHSREMKVIERYSELGPDGKDLAM 94
>gi|333989533|ref|YP_004522147.1| hypothetical protein JDM601_0893 [Mycobacterium sp. JDM601]
gi|333485501|gb|AEF34893.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=102
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/93 (70%), Positives = 74/93 (80%), Gaps = 3/93 (3%)
Query 1 MRPEPPHHENAELAAMNLEMLESQPVPEIDTLREEIDRLDAEILALVKRRAEVSKAIGKA 60
M PE + EN E M + +Q +P+ID LR+EIDRLDAEILA VKRR EVS+ IGKA
Sbjct 1 MGPEHTNSENLESEPMTNQ---TQQLPDIDELRQEIDRLDAEILAAVKRRTEVSQEIGKA 57
Query 61 RMASGGTRLVHSREMKVIERYSELGPDGKDLAI 93
RMASGGTRLVHSREM+VIERYSELG DGKDLA+
Sbjct 58 RMASGGTRLVHSREMQVIERYSELGQDGKDLAM 90
>gi|118463684|ref|YP_880323.1| hypothetical protein MAV_1069 [Mycobacterium avium 104]
gi|254773950|ref|ZP_05215466.1| hypothetical protein MaviaA2_04649 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|118164971|gb|ABK65868.1| chorismate mutase [Mycobacterium avium 104]
gi|336461434|gb|EGO40305.1| monofunctional chorismate mutase [Mycobacterium avium subsp.
paratuberculosis S397]
Length=90
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/78 (79%), Positives = 68/78 (88%), Gaps = 0/78 (0%)
Query 16 MNLEMLESQPVPEIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREM 75
MN E ++ + +ID LR EIDRLDAEILA VKRR EVS+AIG+ARMASGGTRLVHSREM
Sbjct 1 MNTETVDPREATDIDQLRREIDRLDAEILAAVKRRTEVSQAIGRARMASGGTRLVHSREM 60
Query 76 KVIERYSELGPDGKDLAI 93
KVIERYSELGPDGKDLA+
Sbjct 61 KVIERYSELGPDGKDLAM 78
>gi|342860555|ref|ZP_08717206.1| hypothetical protein MCOL_16811 [Mycobacterium colombiense CECT
3035]
gi|342132210|gb|EGT85451.1| hypothetical protein MCOL_16811 [Mycobacterium colombiense CECT
3035]
Length=90
Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/78 (76%), Positives = 69/78 (89%), Gaps = 0/78 (0%)
Query 16 MNLEMLESQPVPEIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREM 75
M+ + +++Q V +ID LR EIDRLDA ILA V+RR +VS+AIGKARMASGGTRLVHSREM
Sbjct 1 MDSDTVQTQEVTDIDELRHEIDRLDAAILAAVQRRTQVSQAIGKARMASGGTRLVHSREM 60
Query 76 KVIERYSELGPDGKDLAI 93
KVIERYSELGP+GKDLAI
Sbjct 61 KVIERYSELGPEGKDLAI 78
>gi|108801295|ref|YP_641492.1| hypothetical protein Mmcs_4331 [Mycobacterium sp. MCS]
gi|119870446|ref|YP_940398.1| hypothetical protein Mkms_4417 [Mycobacterium sp. KMS]
gi|126437276|ref|YP_001072967.1| hypothetical protein Mjls_4711 [Mycobacterium sp. JLS]
gi|108771714|gb|ABG10436.1| Chorismate mutase [Mycobacterium sp. MCS]
gi|119696535|gb|ABL93608.1| chorismate mutase [Mycobacterium sp. KMS]
gi|126237076|gb|ABO00477.1| chorismate mutase [Mycobacterium sp. JLS]
Length=98
Score = 117 bits (293), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 64/93 (69%), Positives = 74/93 (80%), Gaps = 7/93 (7%)
Query 1 MRPEPPHHENAELAAMNLEMLESQPVPEIDTLREEIDRLDAEILALVKRRAEVSKAIGKA 60
MRPEPPH E+ M++E +S +ID LR+EID LDA ILA V+RR EVSK IG+A
Sbjct 1 MRPEPPHEESE----MSIETDQSL---DIDALRQEIDELDAAILAAVQRRTEVSKIIGRA 53
Query 61 RMASGGTRLVHSREMKVIERYSELGPDGKDLAI 93
RMASGGTRLVHSREMKVIERYS LGP+GKDLA+
Sbjct 54 RMASGGTRLVHSREMKVIERYSVLGPEGKDLAM 86
>gi|296169706|ref|ZP_06851324.1| chorismate mutase [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295895703|gb|EFG75399.1| chorismate mutase [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=95
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/83 (78%), Positives = 68/83 (82%), Gaps = 5/83 (6%)
Query 16 MNLEMLESQPV--PE---IDTLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLV 70
M +E +E+ PE ID LR EIDRLDAEILA VKRR EVS+AIGK RMASGGTRLV
Sbjct 1 MKVETVETPETADPEELSIDELRHEIDRLDAEILAAVKRRTEVSQAIGKVRMASGGTRLV 60
Query 71 HSREMKVIERYSELGPDGKDLAI 93
HSREMKVIERYSELGPDGKDLAI
Sbjct 61 HSREMKVIERYSELGPDGKDLAI 83
>gi|256380500|ref|YP_003104160.1| chorismate mutase [Actinosynnema mirum DSM 43827]
gi|255924803|gb|ACU40314.1| chorismate mutase [Actinosynnema mirum DSM 43827]
Length=96
Score = 114 bits (285), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/83 (67%), Positives = 69/83 (84%), Gaps = 0/83 (0%)
Query 22 ESQPVPEIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREMKVIERY 81
+ V ++D LR+EID LDAE+L LVKRR EVSK IG ARMA+GGT++VH+RE+ VI RY
Sbjct 13 QGAAVQDVDALRQEIDHLDAELLRLVKRRVEVSKVIGAARMAAGGTKIVHNREIDVINRY 72
Query 82 SELGPDGKDLAILLLRLGRGRLG 104
ELGP+G+DLA++LLRLGRG LG
Sbjct 73 RELGPEGRDLAMILLRLGRGALG 95
>gi|240172873|ref|ZP_04751532.1| hypothetical protein MkanA1_26407 [Mycobacterium kansasii ATCC
12478]
Length=87
Score = 114 bits (284), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 56/72 (78%), Positives = 65/72 (91%), Gaps = 0/72 (0%)
Query 22 ESQPVPEIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREMKVIERY 81
++Q +P I+ LREEIDRLD EILA VKRRAEVS+AIG+ RMASGGTRLVH+REM+VIERY
Sbjct 4 DTQQLPSIEELREEIDRLDREILAAVKRRAEVSQAIGRVRMASGGTRLVHNREMQVIERY 63
Query 82 SELGPDGKDLAI 93
SELGPDGK LA+
Sbjct 64 SELGPDGKHLAM 75
>gi|145222450|ref|YP_001133128.1| chorismate mutase [Mycobacterium gilvum PYR-GCK]
gi|315442897|ref|YP_004075776.1| monofunctional chorismate mutase [Mycobacterium sp. Spyr1]
gi|145214936|gb|ABP44340.1| chorismate mutase [Mycobacterium gilvum PYR-GCK]
gi|315261200|gb|ADT97941.1| monofunctional chorismate mutase [Mycobacterium sp. Spyr1]
Length=92
Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/73 (76%), Positives = 64/73 (88%), Gaps = 0/73 (0%)
Query 21 LESQPVPEIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREMKVIER 80
+E+ +P+ID LR+EIDRLDAEIL VKRR EVS+ IGKARMASGGTRLVHSREMKVIER
Sbjct 8 METTQLPDIDDLRQEIDRLDAEILEAVKRRTEVSQMIGKARMASGGTRLVHSREMKVIER 67
Query 81 YSELGPDGKDLAI 93
YS LG +GK+LA+
Sbjct 68 YSVLGEEGKNLAM 80
>gi|300782727|ref|YP_003763018.1| chorismate mutase [Amycolatopsis mediterranei U32]
gi|299792241|gb|ADJ42616.1| chorismate mutase [Amycolatopsis mediterranei U32]
gi|340524100|gb|AEK39305.1| chorismate mutase [Amycolatopsis mediterranei S699]
Length=98
Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/77 (72%), Positives = 64/77 (84%), Gaps = 0/77 (0%)
Query 28 EIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREMKVIERYSELGPD 87
+I +LREEID LD EIL LVKRR EVSK IG ARMA+GGTR+V++REM V+ RY ELGPD
Sbjct 21 DIASLREEIDWLDKEILRLVKRRVEVSKTIGAARMAAGGTRIVYNREMDVLARYRELGPD 80
Query 88 GKDLAILLLRLGRGRLG 104
G+ LA+ LL LGRGRLG
Sbjct 81 GRQLAMALLNLGRGRLG 97
>gi|333921243|ref|YP_004494824.1| Chorismate mutase [Amycolicicoccus subflavus DQS3-9A1]
gi|333483464|gb|AEF42024.1| Chorismate mutase [Amycolicicoccus subflavus DQS3-9A1]
Length=101
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/68 (75%), Positives = 60/68 (89%), Gaps = 0/68 (0%)
Query 26 VPEIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREMKVIERYSELG 85
P+ID LR+EIDRLDAEILA V+RR EVS+ IG+ RMASGGTRLVH+REMKVIER+S LG
Sbjct 21 APDIDALRQEIDRLDAEILAAVQRRTEVSRTIGQLRMASGGTRLVHNREMKVIERFSSLG 80
Query 86 PDGKDLAI 93
P+G +LAI
Sbjct 81 PEGHNLAI 88
>gi|257054558|ref|YP_003132390.1| monofunctional chorismate mutase [Saccharomonospora viridis DSM
43017]
gi|256584430|gb|ACU95563.1| monofunctional chorismate mutase [Saccharomonospora viridis DSM
43017]
Length=95
Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/77 (68%), Positives = 64/77 (84%), Gaps = 0/77 (0%)
Query 28 EIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREMKVIERYSELGPD 87
ID LR+EID LD+EIL LVKRRAEVS+ IG+ RMA+GG R+V++REM V+ RY ELGP+
Sbjct 18 NIDELRKEIDWLDSEILRLVKRRAEVSQTIGRVRMAAGGPRIVYNREMDVLARYRELGPE 77
Query 88 GKDLAILLLRLGRGRLG 104
G+ LA+ LL LGRGRLG
Sbjct 78 GRQLAMALLNLGRGRLG 94
>gi|118469683|ref|YP_889773.1| chorismate mutase [Mycobacterium smegmatis str. MC2 155]
gi|118170970|gb|ABK71866.1| chorismate mutase [Mycobacterium smegmatis str. MC2 155]
Length=88
Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/69 (79%), Positives = 60/69 (87%), Gaps = 1/69 (1%)
Query 26 VPEIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREMKVIERYSE-L 84
VPEID LR EID LDA I+A ++RR EVSK IGKARMASGGTRLVHSREMKVIERY + L
Sbjct 8 VPEIDDLRREIDELDATIIAAIQRRTEVSKTIGKARMASGGTRLVHSREMKVIERYIDAL 67
Query 85 GPDGKDLAI 93
GP+GKDLA+
Sbjct 68 GPEGKDLAM 76
>gi|120405824|ref|YP_955653.1| chorismate mutase [Mycobacterium vanbaalenii PYR-1]
gi|119958642|gb|ABM15647.1| chorismate mutase [Mycobacterium vanbaalenii PYR-1]
Length=94
Score = 104 bits (259), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 53/71 (75%), Positives = 59/71 (84%), Gaps = 0/71 (0%)
Query 23 SQPVPEIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREMKVIERYS 82
S +ID LREEIDRLDA IL V+RR EVS+ IGKARMASGGTRLVHSREMKVIERYS
Sbjct 12 SSEANDIDELREEIDRLDAAILEAVQRRTEVSQLIGKARMASGGTRLVHSREMKVIERYS 71
Query 83 ELGPDGKDLAI 93
LG +GK+LA+
Sbjct 72 VLGDEGKNLAM 82
>gi|169628148|ref|YP_001701797.1| hypothetical protein MAB_1053c [Mycobacterium abscessus ATCC
19977]
gi|169240115|emb|CAM61143.1| Conserved hypothetical protein (chorismate mutase?) [Mycobacterium
abscessus]
Length=92
Score = 103 bits (257), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 52/69 (76%), Positives = 60/69 (87%), Gaps = 0/69 (0%)
Query 25 PVPEIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREMKVIERYSEL 84
P+ +ID LR+EIDRLDAEILA +KRR EVS+ IGKARMASGG RLVHSREMKV+ERYSEL
Sbjct 12 PILDIDELRKEIDRLDAEILAAIKRRTEVSREIGKARMASGGPRLVHSREMKVLERYSEL 71
Query 85 GPDGKDLAI 93
G +G LA+
Sbjct 72 GQEGHTLAM 80
>gi|226307920|ref|YP_002767880.1| chorismate mutase [Rhodococcus erythropolis PR4]
gi|226187037|dbj|BAH35141.1| probable chorismate mutase [Rhodococcus erythropolis PR4]
Length=105
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/88 (60%), Positives = 68/88 (78%), Gaps = 2/88 (2%)
Query 6 PHHENAELAAMNLEMLESQPVPEIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMASG 65
P+ A ++E+ +S+ EID LR+EIDRLDAEILA +KRR+EVS+ IG+ RMASG
Sbjct 8 PNGNTVNTAPTDVEIPQSE--AEIDELRKEIDRLDAEILAAIKRRSEVSQIIGRTRMASG 65
Query 66 GTRLVHSREMKVIERYSELGPDGKDLAI 93
G RLVHSREMKV+ER++ELG +G LA+
Sbjct 66 GPRLVHSREMKVLERFNELGQEGHTLAM 93
>gi|38233431|ref|NP_939198.1| hypothetical protein DIP0834 [Corynebacterium diphtheriae NCTC
13129]
gi|38199691|emb|CAE49350.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
Length=110
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/79 (65%), Positives = 62/79 (79%), Gaps = 1/79 (1%)
Query 28 EIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREMKVIERY-SELGP 86
EI REEIDRLD EILA VKRR E+S+AIGK RM SGGTRLVH+RE+ +I ++ E+G
Sbjct 30 EIQQYREEIDRLDKEILAAVKRRTEISRAIGKTRMGSGGTRLVHTREVAIINQFREEIGE 89
Query 87 DGKDLAILLLRLGRGRLGH 105
+G LA +LLR+GRGRLG
Sbjct 90 EGPALAGILLRMGRGRLGE 108
>gi|229495062|ref|ZP_04388808.1| chorismate mutase [Rhodococcus erythropolis SK121]
gi|229317993|gb|EEN83868.1| chorismate mutase [Rhodococcus erythropolis SK121]
Length=108
Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/85 (60%), Positives = 68/85 (80%), Gaps = 2/85 (2%)
Query 9 ENAELAAMNLEMLESQPVPEIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTR 68
+ + A ++E+ +S+ EID LR+EIDRLDAEILA +KRR+EVS+ IG+ RMASGG R
Sbjct 14 DTVKTAPTDVEIPQSE--AEIDELRKEIDRLDAEILAAIKRRSEVSQIIGRTRMASGGPR 71
Query 69 LVHSREMKVIERYSELGPDGKDLAI 93
LVHSREMKV+ER++ELG +G LA+
Sbjct 72 LVHSREMKVLERFNELGQEGHTLAM 96
>gi|111022535|ref|YP_705507.1| hypothetical protein RHA1_ro05569 [Rhodococcus jostii RHA1]
gi|226365047|ref|YP_002782830.1| hypothetical protein ROP_56380 [Rhodococcus opacus B4]
gi|110822065|gb|ABG97349.1| possible chorismate mutase [Rhodococcus jostii RHA1]
gi|226243537|dbj|BAH53885.1| chorismate mutase [Rhodococcus opacus B4]
Length=98
Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/66 (72%), Positives = 58/66 (88%), Gaps = 0/66 (0%)
Query 28 EIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREMKVIERYSELGPD 87
EI+ LR+EID+LDAEILA +KRRAEVS+ IG+ RMASGG RLVHSREMKV+ER++ELG +
Sbjct 21 EIEVLRQEIDKLDAEILAAIKRRAEVSQLIGRTRMASGGPRLVHSREMKVLERFNELGQE 80
Query 88 GKDLAI 93
G LA+
Sbjct 81 GHTLAM 86
>gi|54026970|ref|YP_121212.1| hypothetical protein nfa49960 [Nocardia farcinica IFM 10152]
gi|54018478|dbj|BAD59848.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=100
Score = 97.4 bits (241), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 48/70 (69%), Positives = 58/70 (83%), Gaps = 0/70 (0%)
Query 24 QPVPEIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREMKVIERYSE 83
Q EID LR+EID+LDAEILA +KRR E+S+ IG+ RMASGG RLVHSREMKV+ER+SE
Sbjct 19 QTEAEIDKLRKEIDQLDAEILAAIKRRTEISRLIGRTRMASGGPRLVHSREMKVLERFSE 78
Query 84 LGPDGKDLAI 93
LG +G LA+
Sbjct 79 LGQEGHTLAM 88
>gi|312138579|ref|YP_004005915.1| chorismate mutase [Rhodococcus equi 103S]
gi|325676355|ref|ZP_08156034.1| chorismate mutase [Rhodococcus equi ATCC 33707]
gi|311887918|emb|CBH47230.1| putative chorismate mutase [Rhodococcus equi 103S]
gi|325552916|gb|EGD22599.1| chorismate mutase [Rhodococcus equi ATCC 33707]
Length=97
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/66 (75%), Positives = 57/66 (87%), Gaps = 0/66 (0%)
Query 28 EIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREMKVIERYSELGPD 87
EI LR+EIDRLDAEILA VKRR+EVS+ IG+ RMASGG RLVHSREMKV+ER+SELG +
Sbjct 20 EIAELRKEIDRLDAEILAAVKRRSEVSQIIGRTRMASGGPRLVHSREMKVLERFSELGQE 79
Query 88 GKDLAI 93
G LA+
Sbjct 80 GHTLAM 85
>gi|296141011|ref|YP_003648254.1| chorismate mutase [Tsukamurella paurometabola DSM 20162]
gi|296029145|gb|ADG79915.1| chorismate mutase [Tsukamurella paurometabola DSM 20162]
Length=94
Score = 94.4 bits (233), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/66 (73%), Positives = 56/66 (85%), Gaps = 0/66 (0%)
Query 28 EIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREMKVIERYSELGPD 87
EI LREEIDRLDAEILA +KRR EVS+ IG+ RMASGG RLVHSREMKV++R+SELG +
Sbjct 17 EIAALREEIDRLDAEILAAIKRRTEVSRIIGRTRMASGGPRLVHSREMKVLDRFSELGRE 76
Query 88 GKDLAI 93
G LA+
Sbjct 77 GHTLAM 82
>gi|300781706|ref|ZP_07091560.1| chorismate mutase [Corynebacterium genitalium ATCC 33030]
gi|300533413|gb|EFK54474.1| chorismate mutase [Corynebacterium genitalium ATCC 33030]
Length=97
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/78 (63%), Positives = 61/78 (79%), Gaps = 1/78 (1%)
Query 28 EIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREMKVIERY-SELGP 86
EI R+EIDRLD IL VKRR E+S+AIGK RM SGGTRLVH+RE+ +I ++ ELG
Sbjct 20 EIQRYRQEIDRLDRLILDSVKRRTEISQAIGKTRMGSGGTRLVHNREVAIINQFRDELGE 79
Query 87 DGKDLAILLLRLGRGRLG 104
+G +LA +LLRLGRG+LG
Sbjct 80 EGPNLAAILLRLGRGKLG 97
>gi|227548289|ref|ZP_03978338.1| chorismate mutase [Corynebacterium lipophiloflavum DSM 44291]
gi|227079607|gb|EEI17570.1| chorismate mutase [Corynebacterium lipophiloflavum DSM 44291]
Length=97
Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/78 (65%), Positives = 61/78 (79%), Gaps = 1/78 (1%)
Query 28 EIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREMKVIERY-SELGP 86
EI R+EIDRLD IL VKRR+EVS+AIGK RM SGGTRLVH+RE+ +I ++ ELG
Sbjct 20 EIQAYRKEIDRLDRVILDAVKRRSEVSRAIGKTRMGSGGTRLVHTREVAIINQFRDELGE 79
Query 87 DGKDLAILLLRLGRGRLG 104
+G LA +LLRLGRG+LG
Sbjct 80 EGPALAGILLRLGRGKLG 97
>gi|21323619|dbj|BAB98246.1| Chorismate mutase [Corynebacterium glutamicum ATCC 13032]
Length=103
Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 46/78 (59%), Positives = 61/78 (79%), Gaps = 1/78 (1%)
Query 28 EIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREMKVIERY-SELGP 86
EI REEI+RLD EIL VKRR ++S+ IGK RM+SGGTRLVH+RE+ +I ++ E+G
Sbjct 26 EIQKYREEINRLDREILDAVKRRTKISQTIGKTRMSSGGTRLVHTREVAIINQFREEIGE 85
Query 87 DGKDLAILLLRLGRGRLG 104
+G LA +LLR+GRG+LG
Sbjct 86 EGPALAGILLRMGRGKLG 103
>gi|19552080|ref|NP_600082.1| hypothetical protein NCgl0819 [Corynebacterium glutamicum ATCC
13032]
gi|62389743|ref|YP_225145.1| hypothetical protein cg0975 [Corynebacterium glutamicum ATCC
13032]
gi|41325078|emb|CAF19559.1| putative chorismate mutase [Corynebacterium glutamicum ATCC 13032]
gi|344043596|gb|EGV39285.1| hypothetical protein CgS9114_13820 [Corynebacterium glutamicum
S9114]
Length=101
Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 46/78 (59%), Positives = 61/78 (79%), Gaps = 1/78 (1%)
Query 28 EIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREMKVIERY-SELGP 86
EI REEI+RLD EIL VKRR ++S+ IGK RM+SGGTRLVH+RE+ +I ++ E+G
Sbjct 24 EIQKYREEINRLDREILDAVKRRTKISQTIGKTRMSSGGTRLVHTREVAIINQFREEIGE 83
Query 87 DGKDLAILLLRLGRGRLG 104
+G LA +LLR+GRG+LG
Sbjct 84 EGPALAGILLRMGRGKLG 101
>gi|302524113|ref|ZP_07276455.1| chorismate mutase [Streptomyces sp. AA4]
gi|302433008|gb|EFL04824.1| chorismate mutase [Streptomyces sp. AA4]
Length=98
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/85 (57%), Positives = 62/85 (73%), Gaps = 1/85 (1%)
Query 10 NAELAAMNLEMLESQPVPEI-DTLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTR 68
NA+ + + E P E +LREEID LD+EIL LVKRR EVSK IG ARMA+GGT+
Sbjct 2 NAQTQNADGQPAEHTPAGEDISSLREEIDWLDSEILRLVKRRVEVSKTIGAARMAAGGTK 61
Query 69 LVHSREMKVIERYSELGPDGKDLAI 93
+V++REM V+ RY ELGP+G+ LA+
Sbjct 62 IVYNREMDVLARYRELGPEGRQLAM 86
>gi|227501453|ref|ZP_03931502.1| chorismate mutase [Corynebacterium accolens ATCC 49725]
gi|306835612|ref|ZP_07468622.1| chorismate mutase [Corynebacterium accolens ATCC 49726]
gi|227077478|gb|EEI15441.1| chorismate mutase [Corynebacterium accolens ATCC 49725]
gi|304568503|gb|EFM44058.1| chorismate mutase [Corynebacterium accolens ATCC 49726]
Length=107
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/78 (59%), Positives = 60/78 (77%), Gaps = 1/78 (1%)
Query 28 EIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREMKVIERY-SELGP 86
EI REEI+RLD IL VKRR EVS+A+G+ RM+SGGTRLVH+RE+ ++ + +ELG
Sbjct 30 EIQQYREEINRLDQIILDAVKRRTEVSRAVGRTRMSSGGTRLVHTREIAILNEFRAELGE 89
Query 87 DGKDLAILLLRLGRGRLG 104
+G +A LLR+GRGRLG
Sbjct 90 EGPTIASALLRMGRGRLG 107
>gi|324999174|ref|ZP_08120286.1| hypothetical protein PseP1_10436 [Pseudonocardia sp. P1]
Length=100
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/67 (66%), Positives = 57/67 (86%), Gaps = 0/67 (0%)
Query 28 EIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREMKVIERYSELGPD 87
EID LR+EIDRLD+EIL V RR EVSK IG ARMA+GG R+V+SREM V++R+ ELGP+
Sbjct 22 EIDDLRKEIDRLDSEILDAVLRRTEVSKRIGAARMAAGGPRIVYSREMAVLDRFHELGPE 81
Query 88 GKDLAIL 94
G++LA++
Sbjct 82 GRELALM 88
>gi|258651493|ref|YP_003200649.1| chorismate mutase [Nakamurella multipartita DSM 44233]
gi|258554718|gb|ACV77660.1| chorismate mutase [Nakamurella multipartita DSM 44233]
Length=125
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/90 (52%), Positives = 64/90 (72%), Gaps = 4/90 (4%)
Query 19 EMLESQPVPE----IDTLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSRE 74
E E PVP+ ID LR EID +DA+++ L+ RR +S AIG+AR + GG ++V+SRE
Sbjct 34 ETPEEVPVPDSQEGIDELRVEIDEIDAKLVELILRRTAISHAIGRARKSLGGPKIVYSRE 93
Query 75 MKVIERYSELGPDGKDLAILLLRLGRGRLG 104
M V+ER+ LGP G DL ++LL +GRG+LG
Sbjct 94 MAVLERFRALGPAGTDLGMMLLAMGRGKLG 123
>gi|227487770|ref|ZP_03918086.1| chorismate mutase [Corynebacterium glucuronolyticum ATCC 51867]
gi|227542413|ref|ZP_03972462.1| chorismate mutase [Corynebacterium glucuronolyticum ATCC 51866]
gi|227092272|gb|EEI27584.1| chorismate mutase [Corynebacterium glucuronolyticum ATCC 51867]
gi|227181611|gb|EEI62583.1| chorismate mutase [Corynebacterium glucuronolyticum ATCC 51866]
Length=91
Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/79 (59%), Positives = 61/79 (78%), Gaps = 1/79 (1%)
Query 27 PEIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREMKVIERY-SELG 85
EI LR+EIDRLD IL VKRR E+S+AIG+ R ASGG RLVH+RE++++ ++ E+G
Sbjct 13 AEITQLRKEIDRLDHVILDAVKRRTEISRAIGRTRRASGGVRLVHTREVEIVNQFREEIG 72
Query 86 PDGKDLAILLLRLGRGRLG 104
+G LA +LLRLGRG+LG
Sbjct 73 EEGPALAAILLRLGRGKLG 91
>gi|25027485|ref|NP_737539.1| hypothetical protein CE0929 [Corynebacterium efficiens YS-314]
gi|259507109|ref|ZP_05750009.1| chorismate mutase [Corynebacterium efficiens YS-314]
gi|23492767|dbj|BAC17739.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
gi|259165387|gb|EEW49941.1| chorismate mutase [Corynebacterium efficiens YS-314]
Length=100
Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/77 (59%), Positives = 60/77 (78%), Gaps = 1/77 (1%)
Query 28 EIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREMKVIERY-SELGP 86
EI REEIDRL+ EIL VKRR ++++AIGK RM SGGTRLVH+RE+ +I ++ E+G
Sbjct 24 EIQKYREEIDRLNREILDAVKRRTKIAQAIGKTRMESGGTRLVHTREVAIINQFRDEIGE 83
Query 87 DGKDLAILLLRLGRGRL 103
+G LA +LLR+GRG+L
Sbjct 84 EGPALAAILLRMGRGKL 100
>gi|262201307|ref|YP_003272515.1| chorismate mutase [Gordonia bronchialis DSM 43247]
gi|262084654|gb|ACY20622.1| chorismate mutase [Gordonia bronchialis DSM 43247]
Length=119
Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/66 (70%), Positives = 54/66 (82%), Gaps = 0/66 (0%)
Query 28 EIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREMKVIERYSELGPD 87
+ID LR EIDRLDA ILA VKRR+ VSK IG ARMASGG RLVHSRE+KV+ER+ +LG +
Sbjct 42 DIDALRLEIDRLDAVILAAVKRRSAVSKKIGAARMASGGPRLVHSREVKVLERFKDLGQE 101
Query 88 GKDLAI 93
G LA+
Sbjct 102 GHTLAM 107
>gi|296118284|ref|ZP_06836865.1| chorismate mutase [Corynebacterium ammoniagenes DSM 20306]
gi|295968842|gb|EFG82086.1| chorismate mutase [Corynebacterium ammoniagenes DSM 20306]
Length=128
Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/78 (57%), Positives = 59/78 (76%), Gaps = 1/78 (1%)
Query 28 EIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREMKVIERY-SELGP 86
EI REEI+R+D IL +KRR +VS+AIGK RM SGGTRLVH+RE+ ++ ++ ELG
Sbjct 51 EIQKYREEINRMDRTILDAIKRRTKVSQAIGKTRMGSGGTRLVHTREISILNQFRDELGE 110
Query 87 DGKDLAILLLRLGRGRLG 104
+G +A LLR+GRG+LG
Sbjct 111 EGPAIASALLRMGRGKLG 128
>gi|134103113|ref|YP_001108774.1| chorismate mutase [Saccharopolyspora erythraea NRRL 2338]
gi|291003944|ref|ZP_06561917.1| chorismate mutase [Saccharopolyspora erythraea NRRL 2338]
gi|133915736|emb|CAM05849.1| chorismate mutase [Saccharopolyspora erythraea NRRL 2338]
Length=100
Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/73 (59%), Positives = 57/73 (79%), Gaps = 0/73 (0%)
Query 22 ESQPVPEIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREMKVIERY 81
E+ I R EID LDAEIL LVKRRAEVS+ +G+ARMA+GG R+V++REM V+ RY
Sbjct 17 ETGTADAIAGFRNEIDHLDAEILRLVKRRAEVSRQVGEARMAAGGPRIVYNREMDVLARY 76
Query 82 SELGPDGKDLAIL 94
ELGP+G++LA++
Sbjct 77 RELGPEGRELAMI 89
>gi|255324816|ref|ZP_05365929.1| chorismate mutase [Corynebacterium tuberculostearicum SK141]
gi|255298116|gb|EET77420.1| chorismate mutase [Corynebacterium tuberculostearicum SK141]
Length=107
Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 45/78 (58%), Positives = 59/78 (76%), Gaps = 1/78 (1%)
Query 28 EIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREMKVIERY-SELGP 86
EI REEI+R+D IL KRR EVS+AIG+ RM+SGGTRLVH+RE+ ++ ++ ELG
Sbjct 30 EIQQYREEINRMDRIILNAAKRRTEVSQAIGRTRMSSGGTRLVHTREIAILNQFRDELGE 89
Query 87 DGKDLAILLLRLGRGRLG 104
+G +A LLR+GRGRLG
Sbjct 90 EGPTIASALLRMGRGRLG 107
>gi|213964912|ref|ZP_03393111.1| chorismate mutase [Corynebacterium amycolatum SK46]
gi|213952448|gb|EEB63831.1| chorismate mutase [Corynebacterium amycolatum SK46]
Length=124
Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/78 (54%), Positives = 59/78 (76%), Gaps = 1/78 (1%)
Query 28 EIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREMKVIERYSE-LGP 86
EI+ R+EI+RLD I+ ++RR +SKA+GK R+ SGGTRLVH RE+++I + + LGP
Sbjct 47 EIEQYRKEINRLDGLIIDAIQRRTAISKAVGKTRLGSGGTRLVHGREVQIINEFRDALGP 106
Query 87 DGKDLAILLLRLGRGRLG 104
+G +A LLR+GRGRLG
Sbjct 107 EGPAIASALLRMGRGRLG 124
>gi|227832629|ref|YP_002834336.1| chorismate mutase [Corynebacterium aurimucosum ATCC 700975]
gi|262182886|ref|ZP_06042307.1| hypothetical protein CaurA7_02733 [Corynebacterium aurimucosum
ATCC 700975]
gi|227453645|gb|ACP32398.1| chorismate mutase [Corynebacterium aurimucosum ATCC 700975]
Length=120
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/106 (47%), Positives = 69/106 (66%), Gaps = 7/106 (6%)
Query 6 PHHENAELA--AMNLEMLESQPVP----EIDTLREEIDRLDAEILALVKRRAEVSKAIGK 59
P H++ + +++ M P EI REEI+RLD IL +KRR ++S+ IGK
Sbjct 15 PEHQDPNVVDNGLDIRMPSGTDDPLSDAEIQRYREEINRLDRVILDAIKRRTDISRTIGK 74
Query 60 ARMASGGTRLVHSREMKVIERY-SELGPDGKDLAILLLRLGRGRLG 104
RM+SGGTRLVH+RE+ ++ + SELG +G +A LLRLGRG+LG
Sbjct 75 TRMSSGGTRLVHTREIAILNEFRSELGEEGPAIASALLRLGRGKLG 120
>gi|68536651|ref|YP_251356.1| hypothetical protein jk1565 [Corynebacterium jeikeium K411]
gi|68264250|emb|CAI37738.1| hypothetical protein jk1565 [Corynebacterium jeikeium K411]
Length=108
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/78 (56%), Positives = 61/78 (79%), Gaps = 1/78 (1%)
Query 28 EIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREMKVIERY-SELGP 86
EI + REEI+RLD I+ + RR+EVSKAIGK R+ SGGT+LV++RE+ +I ++ +E G
Sbjct 31 EIQSYREEINRLDRVIIDAIHRRSEVSKAIGKTRLGSGGTKLVYTREVAIINQFRAEFGS 90
Query 87 DGKDLAILLLRLGRGRLG 104
+G ++A LL+LGRGRLG
Sbjct 91 EGVEIAKALLQLGRGRLG 108
>gi|326383699|ref|ZP_08205384.1| chorismate mutase [Gordonia neofelifaecis NRRL B-59395]
gi|326197463|gb|EGD54652.1| chorismate mutase [Gordonia neofelifaecis NRRL B-59395]
Length=118
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/82 (57%), Positives = 60/82 (74%), Gaps = 0/82 (0%)
Query 12 ELAAMNLEMLESQPVPEIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVH 71
+L A+NL + +ID LR EIDR+DA ILA ++RR+ VSK IG RMA+GG RLVH
Sbjct 25 DLDALNLSADVTALPEDIDELRVEIDRMDAVILAAIQRRSAVSKKIGAHRMAAGGPRLVH 84
Query 72 SREMKVIERYSELGPDGKDLAI 93
SREMKV++R+S LG +G LA+
Sbjct 85 SREMKVLDRFSALGSEGHTLAM 106
Lambda K H
0.317 0.136 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 131458853568
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40