BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0949 Length=771 Score E Sequences producing significant alignments: (Bits) Value gi|15840373|ref|NP_335410.1| ATP-dependent helicase PcrA [Mycoba... 1559 0.0 gi|340625962|ref|YP_004744414.1| putative ATP-dependent DNA heli... 1549 0.0 gi|289744679|ref|ZP_06504057.1| ATP-dependent helicase PcrA [Myc... 1534 0.0 gi|289442365|ref|ZP_06432109.1| ATP-dependent DNA helicase PcrA ... 1525 0.0 gi|240172870|ref|ZP_04751529.1| putative ATP dependent dna helic... 1433 0.0 gi|342860556|ref|ZP_08717207.1| ATP-dependent DNA helicase PcrA ... 1416 0.0 gi|296169707|ref|ZP_06851325.1| ATP-dependent helicase PcrA [Myc... 1404 0.0 gi|254819357|ref|ZP_05224358.1| ATP-dependent DNA helicase PcrA ... 1395 0.0 gi|183984523|ref|YP_001852814.1| ATP-dependent DNA helicase II U... 1392 0.0 gi|118619792|ref|YP_908124.1| ATP-dependent DNA helicase II UvrD... 1385 0.0 gi|118466048|ref|YP_880325.1| ATP-dependent DNA helicase PcrA [M... 1375 0.0 gi|41406991|ref|NP_959827.1| hypothetical protein MAP0893 [Mycob... 1373 0.0 gi|336461433|gb|EGO40304.1| ATP-dependent DNA helicase PcrA [Myc... 1370 0.0 gi|298524440|ref|ZP_07011849.1| ATP-dependent helicase [Mycobact... 1346 0.0 gi|289573579|ref|ZP_06453806.1| ATP-dependent DNA helicase II uv... 1333 0.0 gi|289761084|ref|ZP_06520462.1| ATP-dependent DNA helicase II uv... 1333 0.0 gi|289757034|ref|ZP_06516412.1| ATP-dependent DNA helicase pcrA ... 1308 0.0 gi|120405823|ref|YP_955652.1| ATP-dependent DNA helicase PcrA [M... 1303 0.0 gi|289446520|ref|ZP_06436264.1| ATP-dependent DNA helicase II uv... 1295 0.0 gi|145222451|ref|YP_001133129.1| ATP-dependent DNA helicase PcrA... 1288 0.0 gi|333989534|ref|YP_004522148.1| ATP-dependent DNA helicase II U... 1287 0.0 gi|15826976|ref|NP_301239.1| ATP-dependent DNA helicase [Mycobac... 1284 0.0 gi|126437275|ref|YP_001072966.1| ATP-dependent DNA helicase PcrA... 1278 0.0 gi|289749473|ref|ZP_06508851.1| ATP-dependent DNA helicase II uv... 1276 0.0 gi|289753005|ref|ZP_06512383.1| ATP-dependent DNA helicase pcrA ... 1276 0.0 gi|108801294|ref|YP_641491.1| ATP-dependent DNA helicase PcrA [M... 1269 0.0 gi|254773951|ref|ZP_05215467.1| ATP-dependent DNA helicase PcrA ... 1266 0.0 gi|118471354|ref|YP_889771.1| ATP-dependent DNA helicase PcrA [M... 1266 0.0 gi|169628149|ref|YP_001701798.1| putative ATP-dependent DNA heli... 1142 0.0 gi|312138580|ref|YP_004005916.1| uvrd/rep family ATP-dependent D... 1088 0.0 gi|325676354|ref|ZP_08156033.1| ATP-dependent DNA helicase [Rhod... 1087 0.0 gi|54026969|ref|YP_121211.1| putative ATP-dependent DNA helicase... 1080 0.0 gi|111022536|ref|YP_705508.1| ATP-dependent DNA helicase [Rhodoc... 1071 0.0 gi|229495094|ref|ZP_04388840.1| ATP-dependent DNA helicase PcrA ... 1065 0.0 gi|226307919|ref|YP_002767879.1| ATP-dependent DNA helicase UvrD... 1065 0.0 gi|226365048|ref|YP_002782831.1| ATP-dependent DNA helicase UvrD... 1063 0.0 gi|319947691|ref|ZP_08021905.1| UvrD/Rep family ATP-dependent DN... 1008 0.0 gi|333921242|ref|YP_004494823.1| ATP-dependent DNA helicase UvrD... 1006 0.0 gi|296141008|ref|YP_003648251.1| ATP-dependent DNA helicase PcrA... 1001 0.0 gi|262201311|ref|YP_003272519.1| ATP-dependent DNA helicase PcrA... 995 0.0 gi|343927253|ref|ZP_08766731.1| ATP-dependent DNA helicase UvrD1... 989 0.0 gi|337290308|ref|YP_004629329.1| ATP-dependent DNA helicase II [... 974 0.0 gi|227832630|ref|YP_002834337.1| putative ATP-dependent DNA heli... 974 0.0 gi|302205782|gb|ADL10124.1| ATP-dependent DNA helicase pcrA [Cor... 974 0.0 gi|262182885|ref|ZP_06042306.1| putative ATP-dependent DNA helic... 974 0.0 gi|334696424|gb|AEG81221.1| ATP-dependent DNA helicase II [Coryn... 973 0.0 gi|300858060|ref|YP_003783043.1| ATP-dependent DNA helicase II [... 973 0.0 gi|300781705|ref|ZP_07091559.1| ATP-dependent DNA helicase PcrA ... 965 0.0 gi|302330341|gb|ADL20535.1| ATP-dependent DNA helicase pcrA [Cor... 963 0.0 gi|326383701|ref|ZP_08205386.1| ATP-dependent DNA helicase PcrA ... 961 0.0 >gi|15840373|ref|NP_335410.1| ATP-dependent helicase PcrA [Mycobacterium tuberculosis CDC1551] gi|31792138|ref|NP_854631.1| ATP dependent DNA helicase UVRD1 [Mycobacterium bovis AF2122/97] gi|57116803|ref|YP_177772.1| ATP-dependent DNA helicase II UVRD1 [Mycobacterium tuberculosis H37Rv] 56 more sequence titles Length=771 Score = 1559 bits (4037), Expect = 0.0, Method: Compositional matrix adjust. Identities = 771/771 (100%), Positives = 771/771 (100%), Gaps = 0/771 (0%) Query 1 MSVHATDAKPPGPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLM 60 MSVHATDAKPPGPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLM Sbjct 1 MSVHATDAKPPGPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLM 60 Query 61 AARGVGVGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEG 120 AARGVGVGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEG Sbjct 61 AARGVGVGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEG 120 Query 121 LNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTED 180 LNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTED Sbjct 121 LNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTED 180 Query 181 SDDLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEY 240 SDDLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEY Sbjct 181 SDDLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEY 240 Query 241 QDTNHAQYVLVRELVGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTR 300 QDTNHAQYVLVRELVGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTR Sbjct 241 QDTNHAQYVLVRELVGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTR 300 Query 301 TILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAE 360 TILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAE Sbjct 301 TILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAE 360 Query 361 EIDALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAY 420 EIDALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAY Sbjct 361 EIDALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAY 420 Query 421 LRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNT 480 LRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNT Sbjct 421 LRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNT 480 Query 481 RAEKAIAGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELV 540 RAEKAIAGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELV Sbjct 481 RAEKAIAGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELV 540 Query 541 SVAHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHT 600 SVAHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHT Sbjct 541 SVAHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHT 600 Query 601 AKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVSRAIVRSSW 660 AKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVSRAIVRSSW Sbjct 601 AKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVSRAIVRSSW 660 Query 661 GQPMLNPESRFLREIPQELIDWRRTAPKPSFSAPVSGAGRFGSARPSPTRSGASRRPLLV 720 GQPMLNPESRFLREIPQELIDWRRTAPKPSFSAPVSGAGRFGSARPSPTRSGASRRPLLV Sbjct 661 GQPMLNPESRFLREIPQELIDWRRTAPKPSFSAPVSGAGRFGSARPSPTRSGASRRPLLV 720 Query 721 LQVGDRVTHDKYGLGRVEEVSGVGESAMSLIDFGSSGRVKLMHNHAPVTKL 771 LQVGDRVTHDKYGLGRVEEVSGVGESAMSLIDFGSSGRVKLMHNHAPVTKL Sbjct 721 LQVGDRVTHDKYGLGRVEEVSGVGESAMSLIDFGSSGRVKLMHNHAPVTKL 771 >gi|340625962|ref|YP_004744414.1| putative ATP-dependent DNA helicase II UVRD1 [Mycobacterium canettii CIPT 140010059] gi|340004152|emb|CCC43290.1| putative ATP-dependent DNA helicase II UVRD1 [Mycobacterium canettii CIPT 140010059] Length=771 Score = 1549 bits (4010), Expect = 0.0, Method: Compositional matrix adjust. Identities = 764/771 (99%), Positives = 767/771 (99%), Gaps = 0/771 (0%) Query 1 MSVHATDAKPPGPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLM 60 MSVHATDAKPPGPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLM Sbjct 1 MSVHATDAKPPGPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLM 60 Query 61 AARGVGVGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEG 120 AARGVGVGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEG Sbjct 61 AARGVGVGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEG 120 Query 121 LNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTED 180 LNSNFSIYDADDSRRLLQMVGRD+GLDIKRYSPRLLANAISNLKNELIDPHQALAGLTED Sbjct 121 LNSNFSIYDADDSRRLLQMVGRDMGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTED 180 Query 181 SDDLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEY 240 SDDLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEY Sbjct 181 SDDLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEY 240 Query 241 QDTNHAQYVLVRELVGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTR 300 QDTNHAQYVLVRELVGRDSNDG+PP ELCVVGDADQSIYAFRGATIRNIEDFERDYPDTR Sbjct 241 QDTNHAQYVLVRELVGRDSNDGVPPAELCVVGDADQSIYAFRGATIRNIEDFERDYPDTR 300 Query 301 TILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAE 360 TILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAE Sbjct 301 TILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAE 360 Query 361 EIDALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAY 420 EIDALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAY Sbjct 361 EIDALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAY 420 Query 421 LRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNT 480 LRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTG GFGDALVAAAQGKVPMLNT Sbjct 421 LRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGAGFGDALVAAAQGKVPMLNT 480 Query 481 RAEKAIAGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELV 540 RAEKAIAGFVEM DELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELV Sbjct 481 RAEKAIAGFVEMLDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELV 540 Query 541 SVAHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHT 600 SVAHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHT Sbjct 541 SVAHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHT 600 Query 601 AKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVSRAIVRSSW 660 AKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVSRAIVRSSW Sbjct 601 AKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVSRAIVRSSW 660 Query 661 GQPMLNPESRFLREIPQELIDWRRTAPKPSFSAPVSGAGRFGSARPSPTRSGASRRPLLV 720 GQPMLNPESRFLREIPQELIDWRRTAPKPSFSAPVSGAGRFGS RPSPTRSGASRRPLLV Sbjct 661 GQPMLNPESRFLREIPQELIDWRRTAPKPSFSAPVSGAGRFGSPRPSPTRSGASRRPLLV 720 Query 721 LQVGDRVTHDKYGLGRVEEVSGVGESAMSLIDFGSSGRVKLMHNHAPVTKL 771 LQVGDRVTHDKYGLGRVEEVSGVGESAMSLIDFGS+GRVKLMHNHAPVTKL Sbjct 721 LQVGDRVTHDKYGLGRVEEVSGVGESAMSLIDFGSAGRVKLMHNHAPVTKL 771 >gi|289744679|ref|ZP_06504057.1| ATP-dependent helicase PcrA [Mycobacterium tuberculosis 02_1987] gi|289685207|gb|EFD52695.1| ATP-dependent helicase PcrA [Mycobacterium tuberculosis 02_1987] Length=770 Score = 1534 bits (3971), Expect = 0.0, Method: Compositional matrix adjust. Identities = 762/771 (99%), Positives = 763/771 (99%), Gaps = 1/771 (0%) Query 1 MSVHATDAKPPGPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLM 60 MSVHATDAKPPGPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLM Sbjct 1 MSVHATDAKPPGPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLM 60 Query 61 AARGVGVGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEG 120 AARGVGVGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEG Sbjct 61 AARGVGVGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEG 120 Query 121 LNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTED 180 LNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTED Sbjct 121 LNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTED 180 Query 181 SDDLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEY 240 SDDLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEY Sbjct 181 SDDLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEY 240 Query 241 QDTNHAQYVLVRELVGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTR 300 QDTNHAQYVLVRELVGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTR Sbjct 241 QDTNHAQYVLVRELVGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTR 300 Query 301 TILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAE 360 TILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAE Sbjct 301 TILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAE 360 Query 361 EIDALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAY 420 EIDALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAY Sbjct 361 EIDALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAY 420 Query 421 LRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNT 480 LRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNT Sbjct 421 LRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNT 480 Query 481 RAEKAIAGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELV 540 RAEKAIAGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELV Sbjct 481 RAEKAIAGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELV 540 Query 541 SVAHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHT 600 SVAHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHT Sbjct 541 SVAHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHT 600 Query 601 AKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVSRAIVRSSW 660 AKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEER + R RQRLYVSRAIVRSSW Sbjct 601 AKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERGWSMSASPR-RQRLYVSRAIVRSSW 659 Query 661 GQPMLNPESRFLREIPQELIDWRRTAPKPSFSAPVSGAGRFGSARPSPTRSGASRRPLLV 720 GQPMLNPESRFLREIPQELIDWRRTAPKPSFSAPVSGAGRFGSARPSPTRSGASRRPLLV Sbjct 660 GQPMLNPESRFLREIPQELIDWRRTAPKPSFSAPVSGAGRFGSARPSPTRSGASRRPLLV 719 Query 721 LQVGDRVTHDKYGLGRVEEVSGVGESAMSLIDFGSSGRVKLMHNHAPVTKL 771 LQVGDRVTHDKYGLGRVEEVSGVGESAMSLIDFGSSGRVKLMHNHAPVTKL Sbjct 720 LQVGDRVTHDKYGLGRVEEVSGVGESAMSLIDFGSSGRVKLMHNHAPVTKL 770 >gi|289442365|ref|ZP_06432109.1| ATP-dependent DNA helicase PcrA [Mycobacterium tuberculosis T46] gi|289415284|gb|EFD12524.1| ATP-dependent DNA helicase PcrA [Mycobacterium tuberculosis T46] Length=769 Score = 1525 bits (3948), Expect = 0.0, Method: Compositional matrix adjust. Identities = 760/774 (99%), Positives = 762/774 (99%), Gaps = 8/774 (1%) Query 1 MSVHATDAKPPGPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLM 60 MSVHATDAKPPGPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLM Sbjct 1 MSVHATDAKPPGPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLM 60 Query 61 AARGVGVGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEG 120 AARGVGVGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEG Sbjct 61 AARGVGVGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEG 120 Query 121 LNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTED 180 LNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTED Sbjct 121 LNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTED 180 Query 181 SDDLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEY 240 SDDLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEY Sbjct 181 SDDLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEY 240 Query 241 QDTNHAQYVLVRELVGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTR 300 QDTNHAQYVLVRELVGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTR Sbjct 241 QDTNHAQYVLVRELVGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTR 300 Query 301 TILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAE 360 TILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAE Sbjct 301 TILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAE 360 Query 361 EIDALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAY 420 EIDALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAY Sbjct 361 EIDALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAY 420 Query 421 LRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNT 480 LRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNT Sbjct 421 LRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNT 480 Query 481 RAEKAIAGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELV 540 RAEKAIAGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELV Sbjct 481 RAEKAIAGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELV 540 Query 541 SVAHEFSTDRENAAALGP---DDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMT 597 SVAHEFSTDR+ GP + PDTGVLADFLERVSLVADADEIPEHGAGVVTLMT Sbjct 541 SVAHEFSTDRD-----GPRWTSEAGRPDTGVLADFLERVSLVADADEIPEHGAGVVTLMT 595 Query 598 LHTAKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVSRAIVR 657 LHTAKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVSRAIVR Sbjct 596 LHTAKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVSRAIVR 655 Query 658 SSWGQPMLNPESRFLREIPQELIDWRRTAPKPSFSAPVSGAGRFGSARPSPTRSGASRRP 717 SSWGQPMLNPESRFLREIPQELIDWRRTAPKPSFSAPVSGAGRFGSARPSPTRSGASRRP Sbjct 656 SSWGQPMLNPESRFLREIPQELIDWRRTAPKPSFSAPVSGAGRFGSARPSPTRSGASRRP 715 Query 718 LLVLQVGDRVTHDKYGLGRVEEVSGVGESAMSLIDFGSSGRVKLMHNHAPVTKL 771 LLVLQVGDRVTHDKYGLGRVEEVSGVGESAMSLIDFGSSGRVKLMHNHAPVTKL Sbjct 716 LLVLQVGDRVTHDKYGLGRVEEVSGVGESAMSLIDFGSSGRVKLMHNHAPVTKL 769 >gi|240172870|ref|ZP_04751529.1| putative ATP dependent dna helicase [Mycobacterium kansasii ATCC 12478] Length=768 Score = 1433 bits (3710), Expect = 0.0, Method: Compositional matrix adjust. Identities = 710/772 (92%), Positives = 734/772 (96%), Gaps = 5/772 (0%) Query 1 MSVHATDAKPPGPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLM 60 MSVHATDAK S DQLLDGLNPQQRQAV+HEG+PLLIVAGAGSGKTAVLTRRIAYL+ Sbjct 1 MSVHATDAK----SETDQLLDGLNPQQRQAVLHEGAPLLIVAGAGSGKTAVLTRRIAYLI 56 Query 61 AARGVGVGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEG 120 AARGV VGQILAITFTNKAAAEMRERVV LVG +ARYMWVSTFHSTCVRILRNQA+LIEG Sbjct 57 AARGVAVGQILAITFTNKAAAEMRERVVRLVGARARYMWVSTFHSTCVRILRNQASLIEG 116 Query 121 LNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTED 180 LNSNFSIYDADDSRRLLQM+GRD+GLDIKRYSPRLLANAISNLKNELIDPH+ALA LT+D Sbjct 117 LNSNFSIYDADDSRRLLQMIGRDMGLDIKRYSPRLLANAISNLKNELIDPHRALAHLTDD 176 Query 181 SDDLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEY 240 SDDLAR VASVY EYQRRLRAANALDFDDLIGETVAVLQ FP IAQYYRRRFRHVLVDEY Sbjct 177 SDDLARTVASVYAEYQRRLRAANALDFDDLIGETVAVLQTFPDIAQYYRRRFRHVLVDEY 236 Query 241 QDTNHAQYVLVRELVGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTR 300 QDTNHAQYVLVRELVGRD+ D +PP ELCVVGDADQSIYAFRGATIRNIEDFERDYPD Sbjct 237 QDTNHAQYVLVRELVGRDTEDDVPPAELCVVGDADQSIYAFRGATIRNIEDFERDYPDAT 296 Query 301 TILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAE 360 TILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAG GELIVGYVADNEHDEARFVAE Sbjct 297 TILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGEGELIVGYVADNEHDEARFVAE 356 Query 361 EIDALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAY 420 EIDALAE EITYNDVAVFYRTNNSSRSLEEV IRAGIPYKVVGGVRFYERKEIRDIVAY Sbjct 357 EIDALAERGEITYNDVAVFYRTNNSSRSLEEVFIRAGIPYKVVGGVRFYERKEIRDIVAY 416 Query 421 LRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNT 480 LRVLDNPGDAVS+RRILNTPRRGIGDRAEACVAVYAENTG F DAL AAA+GKVPMLNT Sbjct 417 LRVLDNPGDAVSMRRILNTPRRGIGDRAEACVAVYAENTGSSFADALQAAAEGKVPMLNT 476 Query 481 RAEKAIAGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELV 540 RAEKAIAGFVE+ D LRGRLDDDLGELVEAVLERTGYRRELE+STDPQELARLDNLNELV Sbjct 477 RAEKAIAGFVEILDGLRGRLDDDLGELVEAVLERTGYRRELESSTDPQELARLDNLNELV 536 Query 541 SVAHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHT 600 SVAHEFS D+ N AAL PD+EDVPDTGVLA FLERVSL+AD+DEIPEHGAGVVTLMTLHT Sbjct 537 SVAHEFSADQANTAALEPDNEDVPDTGVLAAFLERVSLIADSDEIPEHGAGVVTLMTLHT 596 Query 601 AKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVSRAIVRSSW 660 AKGLEFPVVFVTGWEDGMFPHMRALD+PTELSEERRLAYVGITRARQRLYVSRA+VRSSW Sbjct 597 AKGLEFPVVFVTGWEDGMFPHMRALDDPTELSEERRLAYVGITRARQRLYVSRAMVRSSW 656 Query 661 GQPMLNPESRFLREIPQELIDWRRTAPKPSFSAPVSGAGRFGSARPSPTRS-GASRRPLL 719 GQPMLNPESRFLREIPQELIDWRRTAPKPSFSAPVSGAGRFG+ R +PTRS GAS+RPLL Sbjct 657 GQPMLNPESRFLREIPQELIDWRRTAPKPSFSAPVSGAGRFGAPRSAPTRSAGASKRPLL 716 Query 720 VLQVGDRVTHDKYGLGRVEEVSGVGESAMSLIDFGSSGRVKLMHNHAPVTKL 771 VLQ GDRVTHDKYGLGRVEEVSGVGESAMSLIDFGSSGRVKLMHNHAPVTKL Sbjct 717 VLQPGDRVTHDKYGLGRVEEVSGVGESAMSLIDFGSSGRVKLMHNHAPVTKL 768 >gi|342860556|ref|ZP_08717207.1| ATP-dependent DNA helicase PcrA [Mycobacterium colombiense CECT 3035] gi|342132211|gb|EGT85452.1| ATP-dependent DNA helicase PcrA [Mycobacterium colombiense CECT 3035] Length=774 Score = 1416 bits (3665), Expect = 0.0, Method: Compositional matrix adjust. Identities = 695/776 (90%), Positives = 734/776 (95%), Gaps = 7/776 (0%) Query 1 MSVHATDAKPPGPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLM 60 MSVHATDAKP S ADQLL+GLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYL+ Sbjct 1 MSVHATDAKPA--SEADQLLEGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLI 58 Query 61 AARGVGVGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEG 120 A RGVGVGQ+LAITFTNKAAAEMRERVV LVG +AR MWVSTFHSTCVRILRNQA+LIEG Sbjct 59 AERGVGVGQVLAITFTNKAAAEMRERVVRLVGNRARAMWVSTFHSTCVRILRNQASLIEG 118 Query 121 LNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTED 180 LNSNFSIYDADDSRRLLQM+GRD+GLDIKRYSPRLLANAISNLKNELIDP QA+ LT+D Sbjct 119 LNSNFSIYDADDSRRLLQMIGRDMGLDIKRYSPRLLANAISNLKNELIDPAQAVGNLTDD 178 Query 181 SDDLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEY 240 SD+L+R VASVY EYQRRLRAANALDFDDLIGETVAVL+AFPQ+AQ+YRRRFRHVLVDEY Sbjct 179 SDELSRTVASVYGEYQRRLRAANALDFDDLIGETVAVLRAFPQVAQHYRRRFRHVLVDEY 238 Query 241 QDTNHAQYVLVRELVGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTR 300 QDTNHAQYVLVRELVG D+ DG+PPGELCVVGDADQSIYAFRGATIRNIEDFERDYPD Sbjct 239 QDTNHAQYVLVRELVGTDTEDGVPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDAT 298 Query 301 TILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAE 360 TILLEQNYRSTQNILSAANSVIARN GRR+KRLWT GAGELIVGYVADNEHDEARFVAE Sbjct 299 TILLEQNYRSTQNILSAANSVIARNTGRRDKRLWTAEGAGELIVGYVADNEHDEARFVAE 358 Query 361 EIDALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAY 420 EIDALA+ EITYNDVAVFYRTNNSSRS EEV IRAGIPYKVVGGVRFYERKEIRDIVAY Sbjct 359 EIDALAQKGEITYNDVAVFYRTNNSSRSFEEVFIRAGIPYKVVGGVRFYERKEIRDIVAY 418 Query 421 LRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNT 480 LRVLDNPGDAVS+RRILNTPRRGIGDRAEACVAVYAENTG GF DALVAAA+GKVPMLN+ Sbjct 419 LRVLDNPGDAVSMRRILNTPRRGIGDRAEACVAVYAENTGAGFADALVAAAEGKVPMLNS 478 Query 481 RAEKAIAGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELV 540 RAEKAIAGFVE+ DELRGRLDDDLG+LVE+VLERTGYRRELE+STDPQELARLDNLNELV Sbjct 479 RAEKAIAGFVELLDELRGRLDDDLGDLVESVLERTGYRRELESSTDPQELARLDNLNELV 538 Query 541 SVAHEFSTDRENAAALG-----PDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTL 595 SVAHEFSTDR NAAALG P+DEDVPDTGVLA+FLERVSLV+D+DEIPE AG+VTL Sbjct 539 SVAHEFSTDRANAAALGESLQTPEDEDVPDTGVLAEFLERVSLVSDSDEIPEDDAGMVTL 598 Query 596 MTLHTAKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVSRAI 655 MTLHTAKGLEFPVVFVTGWEDGMFPHMR+LD+P ELSEERRLAYVGITRARQRLYVSRAI Sbjct 599 MTLHTAKGLEFPVVFVTGWEDGMFPHMRSLDDPVELSEERRLAYVGITRARQRLYVSRAI 658 Query 656 VRSSWGQPMLNPESRFLREIPQELIDWRRTAPKPSFSAPVSGAGRFGSARPSPTRSGASR 715 VRSSWGQPMLNPESRFL+EIPQELI+WRRTAP PSFSAPVSGAGRFG+ R +PTRSG S+ Sbjct 659 VRSSWGQPMLNPESRFLQEIPQELIEWRRTAPAPSFSAPVSGAGRFGTPRAAPTRSGTSK 718 Query 716 RPLLVLQVGDRVTHDKYGLGRVEEVSGVGESAMSLIDFGSSGRVKLMHNHAPVTKL 771 RPLLVL GDRVTHDKYGLGRVEEVSGVGESAMSLIDFGSSGRVKLMHNHAP++KL Sbjct 719 RPLLVLAAGDRVTHDKYGLGRVEEVSGVGESAMSLIDFGSSGRVKLMHNHAPISKL 774 >gi|296169707|ref|ZP_06851325.1| ATP-dependent helicase PcrA [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895704|gb|EFG75400.1| ATP-dependent helicase PcrA [Mycobacterium parascrofulaceum ATCC BAA-614] Length=777 Score = 1404 bits (3634), Expect = 0.0, Method: Compositional matrix adjust. Identities = 696/779 (90%), Positives = 735/779 (95%), Gaps = 10/779 (1%) Query 1 MSVHATDAKPPGPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLM 60 MSV+ATDA S ADQLL+GLNPQQRQAVVHEG+PLLIVAGAGSGKTAVLTRRIAYL+ Sbjct 1 MSVYATDANLT--SEADQLLEGLNPQQRQAVVHEGTPLLIVAGAGSGKTAVLTRRIAYLI 58 Query 61 AARGVGVGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEG 120 AARGVGVGQILAITFTNKAAAEMRERVV LVG +AR MWVSTFHSTCVRILRNQAALIEG Sbjct 59 AARGVGVGQILAITFTNKAAAEMRERVVRLVGNRARAMWVSTFHSTCVRILRNQAALIEG 118 Query 121 LNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTED 180 LNSNFSIYDADDSRRLLQM+GRD+GLDIKRYSPRLLANAISNLKNELIDP +A+A LT+D Sbjct 119 LNSNFSIYDADDSRRLLQMIGRDMGLDIKRYSPRLLANAISNLKNELIDPAEAVAKLTDD 178 Query 181 SDDLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEY 240 SDDLAR VASVY EYQRRLRAANALDFDDLIGETVAVL+AFPQIAQ+YRRRFRHVLVDEY Sbjct 179 SDDLARTVASVYGEYQRRLRAANALDFDDLIGETVAVLRAFPQIAQHYRRRFRHVLVDEY 238 Query 241 QDTNHAQYVLVRELVGRD---SNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYP 297 QDTNHAQYVLVRELVG D S D +PP ELCVVGDADQSIYAFRGATIRNIEDFERDYP Sbjct 239 QDTNHAQYVLVRELVGHDVTESGDDVPPAELCVVGDADQSIYAFRGATIRNIEDFERDYP 298 Query 298 DTRTILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARF 357 D TILLEQNYRSTQNILSAANSVIARN+GRREKRLWTDAGAGELIVGYVADNEHDEARF Sbjct 299 DATTILLEQNYRSTQNILSAANSVIARNSGRREKRLWTDAGAGELIVGYVADNEHDEARF 358 Query 358 VAEEIDALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDI 417 VAEEIDALA+ EITYNDVAVFYRTNNSSRS EEV IRAGIPYKVVGGVRFYERKEIRDI Sbjct 359 VAEEIDALADRGEITYNDVAVFYRTNNSSRSFEEVFIRAGIPYKVVGGVRFYERKEIRDI 418 Query 418 VAYLRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPM 477 VAYLRVLDNPGDAVS+RRILNTPRRGIGDRAEACVAVYAENTG F DALVAAA+GKVPM Sbjct 419 VAYLRVLDNPGDAVSMRRILNTPRRGIGDRAEACVAVYAENTGASFADALVAAAEGKVPM 478 Query 478 LNTRAEKAIAGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNLN 537 LN+RAEKAIAGFVE+ DELRGRLD+DLG+LVE+VLERTGYRRELE+STDPQ+LARLDNLN Sbjct 479 LNSRAEKAIAGFVELLDELRGRLDEDLGDLVESVLERTGYRRELESSTDPQDLARLDNLN 538 Query 538 ELVSVAHEFSTDRENAAAL-----GPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGV 592 ELVSVAHEFSTDR NAAAL PDDEDVPDTGVLA+FLERVSLV+D+DEIP+ GAG+ Sbjct 539 ELVSVAHEFSTDRANAAALDESLQAPDDEDVPDTGVLAEFLERVSLVSDSDEIPDDGAGM 598 Query 593 VTLMTLHTAKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVS 652 VTLMTLHTAKGLEFPVVFVTGWEDGMFPHMRALD+P ELSEERRLAYVGITRARQRLY+S Sbjct 599 VTLMTLHTAKGLEFPVVFVTGWEDGMFPHMRALDDPRELSEERRLAYVGITRARQRLYLS 658 Query 653 RAIVRSSWGQPMLNPESRFLREIPQELIDWRRTAPKPSFSAPVSGAGRFGSARPSPTRSG 712 RAIVRSSWGQPMLNPESRFLREIPQELI+WRRTAP PSFSAPVSGAGRFG+ R +PTRSG Sbjct 659 RAIVRSSWGQPMLNPESRFLREIPQELIEWRRTAPAPSFSAPVSGAGRFGAPRAAPTRSG 718 Query 713 ASRRPLLVLQVGDRVTHDKYGLGRVEEVSGVGESAMSLIDFGSSGRVKLMHNHAPVTKL 771 A +RPLLVL+ GDRVTHDKYGLGRVEEVSGVGESAMSLIDFGS+GRVKLMHNHAP++KL Sbjct 719 AGKRPLLVLEPGDRVTHDKYGLGRVEEVSGVGESAMSLIDFGSAGRVKLMHNHAPISKL 777 >gi|254819357|ref|ZP_05224358.1| ATP-dependent DNA helicase PcrA [Mycobacterium intracellulare ATCC 13950] Length=780 Score = 1395 bits (3610), Expect = 0.0, Method: Compositional matrix adjust. Identities = 691/782 (89%), Positives = 732/782 (94%), Gaps = 13/782 (1%) Query 1 MSVHATDAKPPGPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLM 60 MSVHATD K S ADQLL+GLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYL+ Sbjct 1 MSVHATDTKLA--SEADQLLEGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLI 58 Query 61 AARGVGVGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEG 120 AARGVGVGQ+LAITFTNKAAAEMRERVV LVG +AR MWVSTFHSTCVRILRNQA+LIEG Sbjct 59 AARGVGVGQVLAITFTNKAAAEMRERVVRLVGNRARAMWVSTFHSTCVRILRNQASLIEG 118 Query 121 LNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTED 180 LNSNFSIYDADDSRRLLQM+GRD+GLDIKRYSPRLLANAISNLKNELIDP A++ LT+D Sbjct 119 LNSNFSIYDADDSRRLLQMIGRDMGLDIKRYSPRLLANAISNLKNELIDPADAVSKLTDD 178 Query 181 SDDLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEY 240 SD+L+R VASVY EYQRRLRAANALDFDDLIGETVAVL+AFPQIAQ+YRRRFRHVLVDEY Sbjct 179 SDELSRTVASVYGEYQRRLRAANALDFDDLIGETVAVLRAFPQIAQHYRRRFRHVLVDEY 238 Query 241 QDTNHAQYVLVRELVGRD------SNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFER 294 QDTNHAQYVLVRELVGR S+D +PP ELCVVGDADQSIYAFRGATIRNIEDFER Sbjct 239 QDTNHAQYVLVRELVGRGGTEAPASSDDVPPAELCVVGDADQSIYAFRGATIRNIEDFER 298 Query 295 DYPDTRTILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDE 354 DYPD TILLEQNYRSTQNILSAANSVIARN+GRR+KRLWT GAGELIVGYVADNEHDE Sbjct 299 DYPDATTILLEQNYRSTQNILSAANSVIARNSGRRDKRLWTAEGAGELIVGYVADNEHDE 358 Query 355 ARFVAEEIDALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEI 414 ARFVAEEIDALA+ EITYNDVAVFYRTNNSSRSLEEV IRAGIPYKVVGGVRFYERKEI Sbjct 359 ARFVAEEIDALADKGEITYNDVAVFYRTNNSSRSLEEVFIRAGIPYKVVGGVRFYERKEI 418 Query 415 RDIVAYLRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGK 474 RDIVAYLRVLDNPGDAVS+RRILNTPRRGIGDRAEACVAVYAENTG F DALVAAA+GK Sbjct 419 RDIVAYLRVLDNPGDAVSMRRILNTPRRGIGDRAEACVAVYAENTGASFADALVAAAEGK 478 Query 475 VPMLNTRAEKAIAGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARLD 534 VPMLN+RAEKAIAGFVE+ DELRGRLDDDLG+LVE+VLERTGYRRELE+S+DPQELARLD Sbjct 479 VPMLNSRAEKAIAGFVELLDELRGRLDDDLGDLVESVLERTGYRRELESSSDPQELARLD 538 Query 535 NLNELVSVAHEFSTDRENAAAL-----GPDDEDVPDTGVLADFLERVSLVADADEIPEHG 589 NLNELVSVAHEFSTDR NA AL P+DEDVPDTGVLA+FLERVSLV+D+DEIPE G Sbjct 539 NLNELVSVAHEFSTDRANADALDESLHTPEDEDVPDTGVLAEFLERVSLVSDSDEIPEDG 598 Query 590 AGVVTLMTLHTAKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRL 649 AG+VTLMTLHTAKGLEFPVVFVTGWEDGMFPHMR+LD+PTELSEERRLAYVGITRAR+RL Sbjct 599 AGMVTLMTLHTAKGLEFPVVFVTGWEDGMFPHMRSLDDPTELSEERRLAYVGITRARRRL 658 Query 650 YVSRAIVRSSWGQPMLNPESRFLREIPQELIDWRRTAPKPSFSAPVSGAGRFGSARPSPT 709 Y+SRAIVRSSWGQPMLNPESRFLREIPQELIDWRRTAP PSFSAPVSG GRFG R +PT Sbjct 659 YLSRAIVRSSWGQPMLNPESRFLREIPQELIDWRRTAPAPSFSAPVSGVGRFGPPRAAPT 718 Query 710 RSGASRRPLLVLQVGDRVTHDKYGLGRVEEVSGVGESAMSLIDFGSSGRVKLMHNHAPVT 769 RSG S+RPLLVL+ GDRVTHDKYGLGRVEEVSGVGESAMSLIDFGSSGRVKLMHNHAP++ Sbjct 719 RSGMSKRPLLVLEPGDRVTHDKYGLGRVEEVSGVGESAMSLIDFGSSGRVKLMHNHAPIS 778 Query 770 KL 771 KL Sbjct 779 KL 780 >gi|183984523|ref|YP_001852814.1| ATP-dependent DNA helicase II UvrD1 [Mycobacterium marinum M] gi|183177849|gb|ACC42959.1| ATP-dependent DNA helicase II UvrD1 [Mycobacterium marinum M] Length=769 Score = 1392 bits (3604), Expect = 0.0, Method: Compositional matrix adjust. Identities = 691/777 (89%), Positives = 725/777 (94%), Gaps = 14/777 (1%) Query 1 MSVHATDAKPPGPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLM 60 M+V ATDA DQLL+GLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYL+ Sbjct 1 MTVQATDA--------DQLLEGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLI 52 Query 61 AARGVGVGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEG 120 AARGVGVGQILAITFTNKAAAEMRERVV LVG +A+YMWVSTFHSTCVRILRNQAALI+G Sbjct 53 AARGVGVGQILAITFTNKAAAEMRERVVSLVGGRAKYMWVSTFHSTCVRILRNQAALIKG 112 Query 121 LNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTED 180 LNSNFSIYDADDSRRLLQM+GRD+GLDIKRYSPRLLANAISNLKNELIDP +A++ L+ED Sbjct 113 LNSNFSIYDADDSRRLLQMIGRDMGLDIKRYSPRLLANAISNLKNELIDPDRAVSDLSED 172 Query 181 SDDLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEY 240 SDDLAR VASVY EYQRRLRAANALDFDDLIGETV +LQAFP IA +YRRRFRHVLVDEY Sbjct 173 SDDLARTVASVYAEYQRRLRAANALDFDDLIGETVGILQAFPDIAGHYRRRFRHVLVDEY 232 Query 241 QDTNHAQYVLVRELVGRDSND---GIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYP 297 QDTNHAQYVLVRELVGR S D +PP +LCVVGDADQSIYAFRGATIRNIEDFERDYP Sbjct 233 QDTNHAQYVLVRELVGRGSEDEPGDVPPAQLCVVGDADQSIYAFRGATIRNIEDFERDYP 292 Query 298 DTRTILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARF 357 D TILLEQNYRSTQNILSAANSVI+RN+GRREKRLWTDAGAGELIVGYVADNEHDEARF Sbjct 293 DATTILLEQNYRSTQNILSAANSVISRNSGRREKRLWTDAGAGELIVGYVADNEHDEARF 352 Query 358 VAEEIDALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDI 417 VAEEIDALAE EITYNDVAVFYRTNNSSRSLEEV IRAGIPYKVVGGVRFYERKEIRDI Sbjct 353 VAEEIDALAERDEITYNDVAVFYRTNNSSRSLEEVFIRAGIPYKVVGGVRFYERKEIRDI 412 Query 418 VAYLRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPM 477 +AYLRVLDNPGDAVS+RRILNTPRRGIGDRAEACVAVYAENTG GF DALVAAA+GKVPM Sbjct 413 IAYLRVLDNPGDAVSMRRILNTPRRGIGDRAEACVAVYAENTGAGFSDALVAAAEGKVPM 472 Query 478 LNTRAEKAIAGFVEMFDELRGRLDD---DLGELVEAVLERTGYRRELEASTDPQELARLD 534 LN+RAEKAIAGFVE+ DELRGRLD DLGELVEAVLERTGYRRELE+STDPQELARLD Sbjct 473 LNSRAEKAIAGFVELLDELRGRLDSSEGDLGELVEAVLERTGYRRELESSTDPQELARLD 532 Query 535 NLNELVSVAHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVT 594 NLNELVSVAHEFSTD NAA PD EDVPDTG+LA FLERVSLVAD D+IPEHGAGVVT Sbjct 533 NLNELVSVAHEFSTDLANAAEPEPDAEDVPDTGMLAAFLERVSLVADTDDIPEHGAGVVT 592 Query 595 LMTLHTAKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVSRA 654 LMTLHTAKGLEFPVVFVTGWEDGMFPHMRALD+PTELSEERRLAYVGITRARQRLY+SRA Sbjct 593 LMTLHTAKGLEFPVVFVTGWEDGMFPHMRALDDPTELSEERRLAYVGITRARQRLYLSRA 652 Query 655 IVRSSWGQPMLNPESRFLREIPQELIDWRRTAPKPSFSAPVSGAGRFGSARPSPTRSGAS 714 IVRSSWGQPMLNPESRFLREIPQEL++WRR APKPSFSAPVSGAGRFG+AR +P R+ S Sbjct 653 IVRSSWGQPMLNPESRFLREIPQELLNWRRLAPKPSFSAPVSGAGRFGTARSAPVRTSTS 712 Query 715 RRPLLVLQVGDRVTHDKYGLGRVEEVSGVGESAMSLIDFGSSGRVKLMHNHAPVTKL 771 +RPLLVLQ GDRVTHDKYGLGRVEEVSGVGESAMSLIDFGSSGRVKLMHNHAPV KL Sbjct 713 KRPLLVLQPGDRVTHDKYGLGRVEEVSGVGESAMSLIDFGSSGRVKLMHNHAPVAKL 769 >gi|118619792|ref|YP_908124.1| ATP-dependent DNA helicase II UvrD1 [Mycobacterium ulcerans Agy99] gi|118571902|gb|ABL06653.1| ATP-dependent DNA helicase II UvrD1 [Mycobacterium ulcerans Agy99] Length=769 Score = 1385 bits (3584), Expect = 0.0, Method: Compositional matrix adjust. Identities = 687/777 (89%), Positives = 724/777 (94%), Gaps = 14/777 (1%) Query 1 MSVHATDAKPPGPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLM 60 M+V ATDA DQL++GLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYL+ Sbjct 1 MTVQATDA--------DQLVEGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLI 52 Query 61 AARGVGVGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEG 120 AARGVGVGQILAITFTNKAAAE+RERVV LVG +A+YMWVSTFHSTCVRILRNQAALI+G Sbjct 53 AARGVGVGQILAITFTNKAAAEVRERVVSLVGGRAKYMWVSTFHSTCVRILRNQAALIKG 112 Query 121 LNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTED 180 LNSNFSIYDADDSRRLLQM+GRD+GLDIKRYSPRLL NAISNLKNELIDP +A++ L+ED Sbjct 113 LNSNFSIYDADDSRRLLQMIGRDMGLDIKRYSPRLLTNAISNLKNELIDPDRAVSDLSED 172 Query 181 SDDLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEY 240 SDDLAR VASVY EYQRRLRAANALDFDDLIGETV +LQAFP IA +YRRRFRHVLVDEY Sbjct 173 SDDLARTVASVYAEYQRRLRAANALDFDDLIGETVGILQAFPDIAGHYRRRFRHVLVDEY 232 Query 241 QDTNHAQYVLVRELVGRDSND---GIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYP 297 QDTNHAQYVLVRELVGR S D +PP +LCVVGDADQSIYAFRGATIRNIEDFERDYP Sbjct 233 QDTNHAQYVLVRELVGRGSEDEPGDVPPAQLCVVGDADQSIYAFRGATIRNIEDFERDYP 292 Query 298 DTRTILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARF 357 D TILLEQNYRSTQNILSAANSVI+RN+GRREKRLWTDAGAGELIVGYVADNEHDEARF Sbjct 293 DATTILLEQNYRSTQNILSAANSVISRNSGRREKRLWTDAGAGELIVGYVADNEHDEARF 352 Query 358 VAEEIDALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDI 417 VAEEIDALAE EITY+DVAVFYRTNNSSRSLEEV IRAGIPYKVVGGVRFYERKEIRDI Sbjct 353 VAEEIDALAERDEITYSDVAVFYRTNNSSRSLEEVFIRAGIPYKVVGGVRFYERKEIRDI 412 Query 418 VAYLRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPM 477 VAYLRVLDNPGDAVS+RRILNTPRRGIGDRAEACVAVYAENTG GF DALVAAA+GKVPM Sbjct 413 VAYLRVLDNPGDAVSMRRILNTPRRGIGDRAEACVAVYAENTGAGFSDALVAAAEGKVPM 472 Query 478 LNTRAEKAIAGFVEMFDELRGRLDD---DLGELVEAVLERTGYRRELEASTDPQELARLD 534 LN+RAEKAIAGFVE+ DELRGRLD D+GELVEAVLERTGYRRELE+STDPQELARLD Sbjct 473 LNSRAEKAIAGFVELLDELRGRLDSSEGDVGELVEAVLERTGYRRELESSTDPQELARLD 532 Query 535 NLNELVSVAHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVT 594 NLNELVSVAHEFSTD NAA PD EDVPDTG+LA FLERVSLVAD D+IPEHGAGVVT Sbjct 533 NLNELVSVAHEFSTDLANAAEPEPDAEDVPDTGMLAAFLERVSLVADTDDIPEHGAGVVT 592 Query 595 LMTLHTAKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVSRA 654 LMTLHTAKGLEFPVVFVTGWEDGMFPHMRALD+PTELSEERRLAYVGITRARQRLY+SRA Sbjct 593 LMTLHTAKGLEFPVVFVTGWEDGMFPHMRALDDPTELSEERRLAYVGITRARQRLYLSRA 652 Query 655 IVRSSWGQPMLNPESRFLREIPQELIDWRRTAPKPSFSAPVSGAGRFGSARPSPTRSGAS 714 IVRSSWGQPMLNPESRFLREIPQEL++WRR APKPSFSAPVSGAGRFG+AR +P R+ S Sbjct 653 IVRSSWGQPMLNPESRFLREIPQELLNWRRLAPKPSFSAPVSGAGRFGTARSAPVRTSTS 712 Query 715 RRPLLVLQVGDRVTHDKYGLGRVEEVSGVGESAMSLIDFGSSGRVKLMHNHAPVTKL 771 +RPLLVLQ GDRVTHDKYGLGRVEEVSGVGESAMSLIDFGSSGRVKLMHNHAPV KL Sbjct 713 KRPLLVLQPGDRVTHDKYGLGRVEEVSGVGESAMSLIDFGSSGRVKLMHNHAPVAKL 769 >gi|118466048|ref|YP_880325.1| ATP-dependent DNA helicase PcrA [Mycobacterium avium 104] gi|118167335|gb|ABK68232.1| ATP-dependent DNA helicase PcrA [Mycobacterium avium 104] Length=774 Score = 1375 bits (3560), Expect = 0.0, Method: Compositional matrix adjust. Identities = 690/776 (89%), Positives = 733/776 (95%), Gaps = 7/776 (0%) Query 1 MSVHATDAKPPGPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLM 60 MSVH TDAKP S A+QLL+GLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRR+AYL+ Sbjct 1 MSVHVTDAKPV--SEAEQLLEGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRVAYLI 58 Query 61 AARGVGVGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEG 120 AARGVGVGQ+LAITFTNKAAAEMRERVV LVG +AR MWVSTFHSTCVRILRNQA+LIEG Sbjct 59 AARGVGVGQVLAITFTNKAAAEMRERVVRLVGNRARAMWVSTFHSTCVRILRNQASLIEG 118 Query 121 LNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTED 180 LNSNFSIYDADDSRRLLQM+GRD+GLDIKRYSPRLLANAISNLKNELIDP A+A LT+D Sbjct 119 LNSNFSIYDADDSRRLLQMIGRDMGLDIKRYSPRLLANAISNLKNELIDPAAAVANLTDD 178 Query 181 SDDLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEY 240 SD+L+R VASVY EYQRRLRAANALDFDDLIGETVAVL+AFPQIAQ+YRRRFRHVLVDEY Sbjct 179 SDELSRTVASVYGEYQRRLRAANALDFDDLIGETVAVLRAFPQIAQHYRRRFRHVLVDEY 238 Query 241 QDTNHAQYVLVRELVGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTR 300 QDTNHAQYVLVRELVG D+ DG+PPGELCVVGDADQSIYAFRGATIRNIEDFERDYPD Sbjct 239 QDTNHAQYVLVRELVGTDTEDGVPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDAT 298 Query 301 TILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAE 360 TILLEQNYRSTQNILSAANSVIARN+GRR+KRLWTDAGAGELIVGYVADNEHDEARFVAE Sbjct 299 TILLEQNYRSTQNILSAANSVIARNSGRRDKRLWTDAGAGELIVGYVADNEHDEARFVAE 358 Query 361 EIDALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAY 420 EIDALA+ EITYNDVAVFYRTNNSSRS EEV IRAGIPYKVVGGVRFYERKEIRDI+AY Sbjct 359 EIDALAQKGEITYNDVAVFYRTNNSSRSFEEVFIRAGIPYKVVGGVRFYERKEIRDIIAY 418 Query 421 LRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNT 480 LRVLDNPGDAVS+RRILNTPRRGIGDRAEACVAVYAENTG F DALVAAA+GKVPMLN+ Sbjct 419 LRVLDNPGDAVSMRRILNTPRRGIGDRAEACVAVYAENTGASFADALVAAAEGKVPMLNS 478 Query 481 RAEKAIAGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELV 540 RAEKAIAGFVE+ D+LRGRLDDDLG+LVE+VLERTGYRRELE+STDPQELARLDNLNELV Sbjct 479 RAEKAIAGFVELLDDLRGRLDDDLGDLVESVLERTGYRRELESSTDPQELARLDNLNELV 538 Query 541 SVAHEFSTDRENAAAL-----GPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTL 595 SVAHEFSTDR NAAAL DDEDVPDTGVLA+FLERVSLV+D+DEIPE GAG+VTL Sbjct 539 SVAHEFSTDRANAAALDESLDAADDEDVPDTGVLAEFLERVSLVSDSDEIPEDGAGMVTL 598 Query 596 MTLHTAKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVSRAI 655 MTLHTAKGLEFPVVFVTGWEDGMFPHMR+LD+P ELSEERRLAYVGITRARQRLY+SRAI Sbjct 599 MTLHTAKGLEFPVVFVTGWEDGMFPHMRSLDDPVELSEERRLAYVGITRARQRLYLSRAI 658 Query 656 VRSSWGQPMLNPESRFLREIPQELIDWRRTAPKPSFSAPVSGAGRFGSARPSPTRSGASR 715 VRSSWGQPMLNPESRFLREIPQELI+WRRTAP PSFSAPVSGAGRFG+ R +PTR+ S+ Sbjct 659 VRSSWGQPMLNPESRFLREIPQELIEWRRTAPAPSFSAPVSGAGRFGTPRAAPTRAAMSK 718 Query 716 RPLLVLQVGDRVTHDKYGLGRVEEVSGVGESAMSLIDFGSSGRVKLMHNHAPVTKL 771 RPLLVL GDRVTHDKYGLGRVEEVSG GESAMSLIDFGSSGRVKLMHNHAP++KL Sbjct 719 RPLLVLAPGDRVTHDKYGLGRVEEVSGAGESAMSLIDFGSSGRVKLMHNHAPISKL 774 >gi|41406991|ref|NP_959827.1| hypothetical protein MAP0893 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395342|gb|AAS03210.1| UvrD [Mycobacterium avium subsp. paratuberculosis K-10] Length=774 Score = 1373 bits (3554), Expect = 0.0, Method: Compositional matrix adjust. Identities = 689/776 (89%), Positives = 732/776 (95%), Gaps = 7/776 (0%) Query 1 MSVHATDAKPPGPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLM 60 MSVH TDAKP S A+QLL+GLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRR+AYL+ Sbjct 1 MSVHVTDAKPV--SEAEQLLEGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRVAYLI 58 Query 61 AARGVGVGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEG 120 AARGVGVGQ+LAITFTNKAAAEMRERVV LVG +AR MWVSTFHSTCVRILRNQA+LIEG Sbjct 59 AARGVGVGQVLAITFTNKAAAEMRERVVRLVGNRARAMWVSTFHSTCVRILRNQASLIEG 118 Query 121 LNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTED 180 LNSNFSIYDADDSRRLLQM+GRD+GLDIKRYSPRLLANAISNLKNELIDP A+A LT+ Sbjct 119 LNSNFSIYDADDSRRLLQMIGRDMGLDIKRYSPRLLANAISNLKNELIDPAAAVANLTDG 178 Query 181 SDDLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEY 240 SD+L+R VASVY EYQRRLRAANALDFDDLIGETVAVL+AFPQIAQ+YRRRFRHVLVDEY Sbjct 179 SDELSRTVASVYGEYQRRLRAANALDFDDLIGETVAVLRAFPQIAQHYRRRFRHVLVDEY 238 Query 241 QDTNHAQYVLVRELVGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTR 300 QDTNHAQYVLVRELVG D+ DG+PPGELCVVGDADQSIYAFRGATIRNIEDFERDYPD Sbjct 239 QDTNHAQYVLVRELVGTDTEDGVPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDAT 298 Query 301 TILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAE 360 TILLEQNYRSTQNILSAANSVIARN+GRR+KRLWTDAGAGELIVGYVADNEHDEARFVAE Sbjct 299 TILLEQNYRSTQNILSAANSVIARNSGRRDKRLWTDAGAGELIVGYVADNEHDEARFVAE 358 Query 361 EIDALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAY 420 EIDALA+ EITYNDVAVFYRTNNSSRS EEV IRAGIPYKVVGGVRFYERKEIRDI+AY Sbjct 359 EIDALAQKGEITYNDVAVFYRTNNSSRSFEEVFIRAGIPYKVVGGVRFYERKEIRDIIAY 418 Query 421 LRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNT 480 LRVLDNPGDAVS+RRILNTPRRGIGDRAEACVAVYAENTG F DALVAAA+GKVPMLN+ Sbjct 419 LRVLDNPGDAVSMRRILNTPRRGIGDRAEACVAVYAENTGASFADALVAAAEGKVPMLNS 478 Query 481 RAEKAIAGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELV 540 RAEKAIAGFVE+ D+LRGRLDDDLG+LVE+VLERTGYRRELE+STDPQELARLDNLNELV Sbjct 479 RAEKAIAGFVELLDDLRGRLDDDLGDLVESVLERTGYRRELESSTDPQELARLDNLNELV 538 Query 541 SVAHEFSTDRENAAAL-----GPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTL 595 SVAHEFSTDR NAAAL DDEDVPDTGVLA+FLERVSLV+D+DEIPE GAG+VTL Sbjct 539 SVAHEFSTDRANAAALDESLDAADDEDVPDTGVLAEFLERVSLVSDSDEIPEDGAGMVTL 598 Query 596 MTLHTAKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVSRAI 655 MTLHTAKGLEFPVVFVTGWEDGMFPHMR+LD+P ELSEERRLAYVGITRARQRLY+SRAI Sbjct 599 MTLHTAKGLEFPVVFVTGWEDGMFPHMRSLDDPVELSEERRLAYVGITRARQRLYLSRAI 658 Query 656 VRSSWGQPMLNPESRFLREIPQELIDWRRTAPKPSFSAPVSGAGRFGSARPSPTRSGASR 715 VRSSWGQPMLNPESRFLREIPQELI+WRRTAP PSFSAPVSGAGRFG+ R +PTR+ S+ Sbjct 659 VRSSWGQPMLNPESRFLREIPQELIEWRRTAPAPSFSAPVSGAGRFGTPRAAPTRAAMSK 718 Query 716 RPLLVLQVGDRVTHDKYGLGRVEEVSGVGESAMSLIDFGSSGRVKLMHNHAPVTKL 771 RPLLVL GDRVTHDKYGLGRVEEVSG GESAMSLIDFGSSGRVKLMHNHAP++KL Sbjct 719 RPLLVLAPGDRVTHDKYGLGRVEEVSGAGESAMSLIDFGSSGRVKLMHNHAPISKL 774 >gi|336461433|gb|EGO40304.1| ATP-dependent DNA helicase PcrA [Mycobacterium avium subsp. paratuberculosis S397] Length=774 Score = 1370 bits (3546), Expect = 0.0, Method: Compositional matrix adjust. Identities = 688/776 (89%), Positives = 731/776 (95%), Gaps = 7/776 (0%) Query 1 MSVHATDAKPPGPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLM 60 MSVH TDAKP S A+QLL+GLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRR+AYL+ Sbjct 1 MSVHVTDAKPV--SEAEQLLEGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRVAYLI 58 Query 61 AARGVGVGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEG 120 AARGVGVGQ+LAITFTNKAAAEMRERVV LVG +AR MWVSTFHSTCVRILRNQA+LIEG Sbjct 59 AARGVGVGQVLAITFTNKAAAEMRERVVRLVGNRARAMWVSTFHSTCVRILRNQASLIEG 118 Query 121 LNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTED 180 LNSNFSIYDADDSRRLLQM+GRD+GLDIKRYSPRLLANAISNLKNELIDP A+A LT+ Sbjct 119 LNSNFSIYDADDSRRLLQMIGRDMGLDIKRYSPRLLANAISNLKNELIDPAAAVANLTDG 178 Query 181 SDDLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEY 240 SD+L+R VASVY EYQRRLRAANALDFDDLIGETVAVL+AFPQIAQ+YRRRFRHVLVDEY Sbjct 179 SDELSRTVASVYGEYQRRLRAANALDFDDLIGETVAVLRAFPQIAQHYRRRFRHVLVDEY 238 Query 241 QDTNHAQYVLVRELVGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTR 300 QDTNHAQYVLVRELVG D+ DG+PPGELCVVGDADQSIYAFRGATIRNIEDFERDYPD Sbjct 239 QDTNHAQYVLVRELVGTDTEDGVPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDAT 298 Query 301 TILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAE 360 TILLEQNYRSTQNILSAANSVIARN+GRR+KRLWTDAGAGELIVGYVADNEHDEARFVAE Sbjct 299 TILLEQNYRSTQNILSAANSVIARNSGRRDKRLWTDAGAGELIVGYVADNEHDEARFVAE 358 Query 361 EIDALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAY 420 EIDALA+ EITYNDVAVFYRTNNS RS EEV IRAGIPYKVVGGVRFYERKEIRDI+AY Sbjct 359 EIDALAQKGEITYNDVAVFYRTNNSLRSFEEVFIRAGIPYKVVGGVRFYERKEIRDIIAY 418 Query 421 LRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNT 480 LRVLDNPGDAVS+RRILNTPRRGIGDRAEACVAVYAENTG F DALVAAA+GKVPMLN+ Sbjct 419 LRVLDNPGDAVSMRRILNTPRRGIGDRAEACVAVYAENTGASFADALVAAAEGKVPMLNS 478 Query 481 RAEKAIAGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELV 540 RAEKAIAGFVE+ D+LRGRLDDDLG+LVE+VLERTGYRRELE+STDPQELARLDNLNELV Sbjct 479 RAEKAIAGFVELLDDLRGRLDDDLGDLVESVLERTGYRRELESSTDPQELARLDNLNELV 538 Query 541 SVAHEFSTDRENAAAL-----GPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTL 595 SVAHEFSTDR NAAAL DDEDVPDTGVLA+FLERVSLV+D+DEIPE GAG+VTL Sbjct 539 SVAHEFSTDRANAAALDESLDAADDEDVPDTGVLAEFLERVSLVSDSDEIPEDGAGMVTL 598 Query 596 MTLHTAKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVSRAI 655 MTLHTAKGLEFPVVFVTGWEDGMFPHMR+LD+P ELSEERRLAYVGITRARQRLY+SRAI Sbjct 599 MTLHTAKGLEFPVVFVTGWEDGMFPHMRSLDDPVELSEERRLAYVGITRARQRLYLSRAI 658 Query 656 VRSSWGQPMLNPESRFLREIPQELIDWRRTAPKPSFSAPVSGAGRFGSARPSPTRSGASR 715 VRSSWGQPMLNPESRFLREIPQELI+WRRTAP PSFSAPVSGAGRFG+ R +PTR+ S+ Sbjct 659 VRSSWGQPMLNPESRFLREIPQELIEWRRTAPAPSFSAPVSGAGRFGTPRAAPTRAAMSK 718 Query 716 RPLLVLQVGDRVTHDKYGLGRVEEVSGVGESAMSLIDFGSSGRVKLMHNHAPVTKL 771 RPLLVL GDRVTHDKYGLGRVEEVSG GESAMSLIDFGSSGRVKLMHNHAP++KL Sbjct 719 RPLLVLAPGDRVTHDKYGLGRVEEVSGAGESAMSLIDFGSSGRVKLMHNHAPISKL 774 >gi|298524440|ref|ZP_07011849.1| ATP-dependent helicase [Mycobacterium tuberculosis 94_M4241A] gi|298494234|gb|EFI29528.1| ATP-dependent helicase [Mycobacterium tuberculosis 94_M4241A] Length=695 Score = 1346 bits (3484), Expect = 0.0, Method: Compositional matrix adjust. Identities = 668/670 (99%), Positives = 668/670 (99%), Gaps = 0/670 (0%) Query 1 MSVHATDAKPPGPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLM 60 MSVHATDAKPPGPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLM Sbjct 1 MSVHATDAKPPGPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLM 60 Query 61 AARGVGVGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEG 120 AARGVGVGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEG Sbjct 61 AARGVGVGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEG 120 Query 121 LNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTED 180 LNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTED Sbjct 121 LNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTED 180 Query 181 SDDLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEY 240 SDDLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEY Sbjct 181 SDDLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEY 240 Query 241 QDTNHAQYVLVRELVGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTR 300 QDTNHAQYVLVRELVGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTR Sbjct 241 QDTNHAQYVLVRELVGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTR 300 Query 301 TILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAE 360 TILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAE Sbjct 301 TILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAE 360 Query 361 EIDALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAY 420 EIDALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAY Sbjct 361 EIDALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAY 420 Query 421 LRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNT 480 LRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNT Sbjct 421 LRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNT 480 Query 481 RAEKAIAGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELV 540 RAEKAIAGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELV Sbjct 481 RAEKAIAGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELV 540 Query 541 SVAHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHT 600 SVAHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHT Sbjct 541 SVAHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHT 600 Query 601 AKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVSRAIVRSSW 660 AKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVSRAIVRSSW Sbjct 601 AKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVSRAIVRSSW 660 Query 661 GQPMLNPESR 670 GQPMLNP R Sbjct 661 GQPMLNPGVR 670 >gi|289573579|ref|ZP_06453806.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis K85] gi|289538010|gb|EFD42588.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis K85] Length=694 Score = 1333 bits (3451), Expect = 0.0, Method: Compositional matrix adjust. Identities = 661/662 (99%), Positives = 662/662 (100%), Gaps = 0/662 (0%) Query 1 MSVHATDAKPPGPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLM 60 MSVHATDAKPPGPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLM Sbjct 1 MSVHATDAKPPGPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLM 60 Query 61 AARGVGVGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEG 120 AARGVGVGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEG Sbjct 61 AARGVGVGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEG 120 Query 121 LNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTED 180 LNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTED Sbjct 121 LNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTED 180 Query 181 SDDLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEY 240 SDDLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEY Sbjct 181 SDDLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEY 240 Query 241 QDTNHAQYVLVRELVGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTR 300 QDTNHAQYVLVRELVGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTR Sbjct 241 QDTNHAQYVLVRELVGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTR 300 Query 301 TILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAE 360 TILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAE Sbjct 301 TILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAE 360 Query 361 EIDALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAY 420 EIDALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAY Sbjct 361 EIDALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAY 420 Query 421 LRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNT 480 LRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNT Sbjct 421 LRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNT 480 Query 481 RAEKAIAGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELV 540 RAEKAIAGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELV Sbjct 481 RAEKAIAGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELV 540 Query 541 SVAHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHT 600 SVAHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHT Sbjct 541 SVAHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHT 600 Query 601 AKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVSRAIVRSSW 660 AKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVSRAIVRSSW Sbjct 601 AKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVSRAIVRSSW 660 Query 661 GQ 662 G+ Sbjct 661 GR 662 >gi|289761084|ref|ZP_06520462.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis GM 1503] gi|289708590|gb|EFD72606.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis GM 1503] Length=702 Score = 1333 bits (3449), Expect = 0.0, Method: Compositional matrix adjust. Identities = 670/700 (96%), Positives = 676/700 (97%), Gaps = 15/700 (2%) Query 1 MSVHATDAKPPGPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLM 60 MSVHATDAKPPGPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLM Sbjct 1 MSVHATDAKPPGPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLM 60 Query 61 AARGVGVGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEG 120 AARGVGVGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEG Sbjct 61 AARGVGVGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEG 120 Query 121 LNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTED 180 LNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTED Sbjct 121 LNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTED 180 Query 181 SDDLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEY 240 SDDLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEY Sbjct 181 SDDLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEY 240 Query 241 QDTNHAQYVLVRELVGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTR 300 QDTNHAQYVLVRELVGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTR Sbjct 241 QDTNHAQYVLVRELVGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTR 300 Query 301 TILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAE 360 TILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAE Sbjct 301 TILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAE 360 Query 361 EIDALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAY 420 EIDALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAY Sbjct 361 EIDALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAY 420 Query 421 LRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNT 480 LRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNT Sbjct 421 LRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNT 480 Query 481 RAEKAIAGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELV 540 RAEKAIAGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELV Sbjct 481 RAEKAIAGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELV 540 Query 541 SVAHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHT 600 SVAHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHT Sbjct 541 SVAHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHT 600 Query 601 AKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVSRAIVRSSW 660 AKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVSRAIVRSSW Sbjct 601 AKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVSRAIVRSSW 660 Query 661 G----QPML-----NPES--RFLREIPQELI----DWRRT 685 G QP + NP R P+ ++ +WRR+ Sbjct 661 GPADAQPGVAVSAGNPAGAHRLAAHRPEAVVQCPGEWRRS 700 >gi|289757034|ref|ZP_06516412.1| ATP-dependent DNA helicase pcrA [Mycobacterium tuberculosis T85] gi|289712598|gb|EFD76610.1| ATP-dependent DNA helicase pcrA [Mycobacterium tuberculosis T85] Length=650 Score = 1308 bits (3385), Expect = 0.0, Method: Compositional matrix adjust. Identities = 648/649 (99%), Positives = 648/649 (99%), Gaps = 0/649 (0%) Query 1 MSVHATDAKPPGPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLM 60 MSVHATDAKPPGPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLM Sbjct 1 MSVHATDAKPPGPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLM 60 Query 61 AARGVGVGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEG 120 AARGVGVGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEG Sbjct 61 AARGVGVGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEG 120 Query 121 LNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTED 180 LNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTED Sbjct 121 LNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTED 180 Query 181 SDDLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEY 240 SDDLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEY Sbjct 181 SDDLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEY 240 Query 241 QDTNHAQYVLVRELVGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTR 300 QDTNHAQYVLVRELVGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTR Sbjct 241 QDTNHAQYVLVRELVGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTR 300 Query 301 TILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAE 360 TILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAE Sbjct 301 TILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAE 360 Query 361 EIDALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAY 420 EIDALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAY Sbjct 361 EIDALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAY 420 Query 421 LRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNT 480 LRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNT Sbjct 421 LRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNT 480 Query 481 RAEKAIAGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELV 540 RAEKAIAGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELV Sbjct 481 RAEKAIAGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELV 540 Query 541 SVAHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHT 600 SVAHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHT Sbjct 541 SVAHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHT 600 Query 601 AKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRL 649 AKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQR Sbjct 601 AKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRC 649 >gi|120405823|ref|YP_955652.1| ATP-dependent DNA helicase PcrA [Mycobacterium vanbaalenii PYR-1] gi|119958641|gb|ABM15646.1| ATP-dependent DNA helicase PcrA [Mycobacterium vanbaalenii PYR-1] Length=775 Score = 1303 bits (3372), Expect = 0.0, Method: Compositional matrix adjust. Identities = 643/767 (84%), Positives = 697/767 (91%), Gaps = 7/767 (0%) Query 12 GPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQIL 71 GP+ D+LLDGLNPQQRQAV+H+G+PLLIVAGAGSGKTAVLTRRIAYL+AAR VGVGQ+L Sbjct 9 GPTGTDELLDGLNPQQRQAVLHQGTPLLIVAGAGSGKTAVLTRRIAYLLAARDVGVGQVL 68 Query 72 AITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDAD 131 AITFTNKAAAEMRERVV LVG +AR MWVSTFHSTCVRILRNQA+L+ GLNSNFSIYDAD Sbjct 69 AITFTNKAAAEMRERVVSLVGPRARNMWVSTFHSTCVRILRNQASLLPGLNSNFSIYDAD 128 Query 132 DSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTEDSDDLARAVASV 191 DSRRLL M+G+D+GLD KR+SPRLLAN ISNLKNELI P QA A +E DDLAR +ASV Sbjct 129 DSRRLLLMIGKDMGLDTKRHSPRLLANGISNLKNELIGPEQAAAEASEAEDDLARIIASV 188 Query 192 YDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEYQDTNHAQYVLV 251 Y EYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRH+LVDEYQDTNHAQYVLV Sbjct 189 YAEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHILVDEYQDTNHAQYVLV 248 Query 252 RELVGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTRTILLEQNYRST 311 RELVG ++ DG+PP ELCVVGDADQSIYAFRGATIRNIEDFERD+P+ TILLEQNYRST Sbjct 249 RELVGTETVDGVPPAELCVVGDADQSIYAFRGATIRNIEDFERDFPNATTILLEQNYRST 308 Query 312 QNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAEEIDALAEG-SE 370 Q IL+AANSVIARN GRR+KRLWTDAG GELIVGYVADNEHDEARFVA+EIDAL++ ++ Sbjct 309 QTILNAANSVIARNVGRRDKRLWTDAGEGELIVGYVADNEHDEARFVAQEIDALSDAVAD 368 Query 371 ITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAYLRVLDNPGDA 430 +YNDVAVFYRTNNSSR++EEV IRAGIPYKVVGGVRFYER+EIRDIVAYLRVLDNPGD+ Sbjct 369 FSYNDVAVFYRTNNSSRAIEEVFIRAGIPYKVVGGVRFYERREIRDIVAYLRVLDNPGDS 428 Query 431 VSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRAEKAIAGFV 490 VS+RRILNTPRRGIGDRAEACVAVYAE TG F DAL AAA+GKVPMLNTR+EKAI GFV Sbjct 429 VSMRRILNTPRRGIGDRAEACVAVYAETTGANFNDALAAAAEGKVPMLNTRSEKAIKGFV 488 Query 491 EMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELVSVAHEFSTDR 550 E+ DELRG LD +LG+LVE VL+RTGYR ELEAS+DPQ+LARLDNLNELVSVAHEFS D Sbjct 489 ELLDELRGGLDGELGDLVETVLDRTGYRAELEASSDPQDLARLDNLNELVSVAHEFSIDL 548 Query 551 ENAAALG------PDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHTAKGL 604 NA AL P DEDVPDTGVLA FLERVSLVADAD+IPEHGAGVVT+MTLHTAKGL Sbjct 549 ANAKALASEEGAEPQDEDVPDTGVLAAFLERVSLVADADDIPEHGAGVVTMMTLHTAKGL 608 Query 605 EFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVSRAIVRSSWGQPM 664 EFPVVFVTGWEDGMFPHMRAL +P ELSEERRLAYVGITRARQRLY+SRA VRSSWGQPM Sbjct 609 EFPVVFVTGWEDGMFPHMRALGDPGELSEERRLAYVGITRARQRLYLSRAKVRSSWGQPM 668 Query 665 LNPESRFLREIPQELIDWRRTAPKPSFSAPVSGAGRFGSARPSPTRSGASRRPLLVLQVG 724 LNPESRFLREIPQELIDWRRT SFSAPV AGR+G+ RPSPTR A +RPL+VL+ G Sbjct 669 LNPESRFLREIPQELIDWRRTEQPSSFSAPVGNAGRYGAPRPSPTRPAAGKRPLIVLEPG 728 Query 725 DRVTHDKYGLGRVEEVSGVGESAMSLIDFGSSGRVKLMHNHAPVTKL 771 DRVTHDKYGLGRVEEVSG GESAMSLIDFGS+GRVKLMHNHAPV+KL Sbjct 729 DRVTHDKYGLGRVEEVSGAGESAMSLIDFGSAGRVKLMHNHAPVSKL 775 >gi|289446520|ref|ZP_06436264.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis CPHL_A] gi|289419478|gb|EFD16679.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis CPHL_A] Length=702 Score = 1295 bits (3352), Expect = 0.0, Method: Compositional matrix adjust. Identities = 644/645 (99%), Positives = 644/645 (99%), Gaps = 0/645 (0%) Query 1 MSVHATDAKPPGPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLM 60 MSVHATDAKPPGPSPA QLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLM Sbjct 1 MSVHATDAKPPGPSPAGQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLM 60 Query 61 AARGVGVGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEG 120 AARGVGVGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEG Sbjct 61 AARGVGVGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEG 120 Query 121 LNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTED 180 LNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTED Sbjct 121 LNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTED 180 Query 181 SDDLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEY 240 SDDLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEY Sbjct 181 SDDLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEY 240 Query 241 QDTNHAQYVLVRELVGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTR 300 QDTNHAQYVLVRELVGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTR Sbjct 241 QDTNHAQYVLVRELVGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTR 300 Query 301 TILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAE 360 TILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAE Sbjct 301 TILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAE 360 Query 361 EIDALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAY 420 EIDALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAY Sbjct 361 EIDALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAY 420 Query 421 LRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNT 480 LRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNT Sbjct 421 LRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNT 480 Query 481 RAEKAIAGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELV 540 RAEKAIAGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELV Sbjct 481 RAEKAIAGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELV 540 Query 541 SVAHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHT 600 SVAHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHT Sbjct 541 SVAHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHT 600 Query 601 AKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRA 645 AKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRA Sbjct 601 AKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRA 645 >gi|145222451|ref|YP_001133129.1| ATP-dependent DNA helicase PcrA [Mycobacterium gilvum PYR-GCK] gi|315442898|ref|YP_004075777.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. Spyr1] gi|145214937|gb|ABP44341.1| ATP-dependent DNA helicase PcrA [Mycobacterium gilvum PYR-GCK] gi|315261201|gb|ADT97942.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. Spyr1] Length=780 Score = 1288 bits (3333), Expect = 0.0, Method: Compositional matrix adjust. Identities = 644/781 (83%), Positives = 703/781 (91%), Gaps = 11/781 (1%) Query 1 MSVHATDAKPPGPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLM 60 M+ H T + P D LL+GLNPQQRQAV+HEG+PLLIVAGAGSGKTAVLTRRIAYL+ Sbjct 1 MTAHVTLPEAT-PMAGDDLLEGLNPQQRQAVLHEGTPLLIVAGAGSGKTAVLTRRIAYLL 59 Query 61 AARGVGVGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEG 120 AAR VGVGQ+LAITFTNKAAAEMRERVVGLVG +AR MWVSTFHSTCVRILRNQA+L+ G Sbjct 60 AARDVGVGQVLAITFTNKAAAEMRERVVGLVGPRARNMWVSTFHSTCVRILRNQASLLPG 119 Query 121 LNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTED 180 LNSNFSIYDADDSRRLL M+G+D+GLD KR+SPRLLAN+ISNLKNELI P QA A +E Sbjct 120 LNSNFSIYDADDSRRLLLMIGKDMGLDTKRHSPRLLANSISNLKNELIGPEQAAAEASEA 179 Query 181 SDDLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEY 240 +DDLAR VA VY EYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRH+LVDEY Sbjct 180 ADDLARIVADVYGEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHILVDEY 239 Query 241 QDTNHAQYVLVRELVGR---DSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYP 297 QDTNHAQYVLVREL G +S++ + P ELCVVGDADQSIYAFRGATIRNIEDFERD+P Sbjct 240 QDTNHAQYVLVRELTGSGATESDESVAPAELCVVGDADQSIYAFRGATIRNIEDFERDFP 299 Query 298 DTRTILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARF 357 TILLEQNYRSTQ IL+AANSVIARNAGRREKRLWTDAG GELIVGYVADNEHDEARF Sbjct 300 SATTILLEQNYRSTQTILNAANSVIARNAGRREKRLWTDAGEGELIVGYVADNEHDEARF 359 Query 358 VAEEIDALAEG-SEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRD 416 +A+EIDAL++ + +YNDVAVFYRTNNSSR++EEV IRAGIPYKVVGGVRFYER+EIRD Sbjct 360 IAQEIDALSDSIPDFSYNDVAVFYRTNNSSRAIEEVFIRAGIPYKVVGGVRFYERREIRD 419 Query 417 IVAYLRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVP 476 IVAYLRVLDNPGDAVS+RRILNTPRRGIGDRAEACVAV+AENTG+ F DALVAAA+G VP Sbjct 420 IVAYLRVLDNPGDAVSMRRILNTPRRGIGDRAEACVAVHAENTGLNFNDALVAAAEGNVP 479 Query 477 MLNTRAEKAIAGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNL 536 MLNTR+EKAIAGFV + D+LRG LD +LG+LVEAVL+RTGYR ELEAS+DPQ+LARLDNL Sbjct 480 MLNTRSEKAIAGFVALLDDLRGGLDGELGDLVEAVLDRTGYRAELEASSDPQDLARLDNL 539 Query 537 NELVSVAHEFSTDRENAAALG-----PDDEDVPDTGVLADFLERVSLVADADEIPEHGAG 591 NELVSVAHEFSTD NA AL DEDVPDTGVLA FLERVSLVADAD+IPEHG+G Sbjct 540 NELVSVAHEFSTDLANARALAEGDEDAQDEDVPDTGVLAAFLERVSLVADADDIPEHGSG 599 Query 592 VVTLMTLHTAKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYV 651 VVT+MTLHTAKGLEFP+VFVTGWEDGMFPHMRAL +P ELSEERRLAYVGITRARQRLY+ Sbjct 600 VVTMMTLHTAKGLEFPLVFVTGWEDGMFPHMRALGDPLELSEERRLAYVGITRARQRLYL 659 Query 652 SRAIVRSSWGQPMLNPESRFLREIPQELIDWRRT-APKPSFSAPVSGAGRFGSARPSPTR 710 SRA VRSSWGQPMLNPESRFLREIPQELIDWRRT AP SFSAPV AGR+G+ RPSPTR Sbjct 660 SRAKVRSSWGQPMLNPESRFLREIPQELIDWRRTEAPASSFSAPVGNAGRYGTPRPSPTR 719 Query 711 SGASRRPLLVLQVGDRVTHDKYGLGRVEEVSGVGESAMSLIDFGSSGRVKLMHNHAPVTK 770 A +RPL+VL+ GDRVTHDKYGLGRVEEVSG GESAMSLIDFGS+GRVKLMHNHAP++K Sbjct 720 PAAGKRPLIVLEPGDRVTHDKYGLGRVEEVSGAGESAMSLIDFGSAGRVKLMHNHAPISK 779 Query 771 L 771 L Sbjct 780 L 780 >gi|333989534|ref|YP_004522148.1| ATP-dependent DNA helicase II UvrD1 [Mycobacterium sp. JDM601] gi|333485502|gb|AEF34894.1| ATP-dependent DNA helicase II UvrD1 [Mycobacterium sp. JDM601] Length=768 Score = 1287 bits (3331), Expect = 0.0, Method: Compositional matrix adjust. Identities = 637/777 (82%), Positives = 698/777 (90%), Gaps = 15/777 (1%) Query 1 MSVHATDAKPPGPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLM 60 M+VHAT D LLDGLNPQQR+AV+HEGSPLLIVAGAGSGKTAVLTRRIAYL+ Sbjct 1 MTVHAT-------PEIDHLLDGLNPQQRRAVLHEGSPLLIVAGAGSGKTAVLTRRIAYLL 53 Query 61 AARGVGVGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEG 120 AAR VGVGQ+LAITFTNKAAAEMRERVV LVG +AR MWVSTFHSTCVRILRNQA+++ G Sbjct 54 AARDVGVGQVLAITFTNKAAAEMRERVVDLVGPRARVMWVSTFHSTCVRILRNQASVVPG 113 Query 121 LNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTED 180 LNSNFSIYDADDSRRLL M+GRD+GLD+KR++PRLLANAISNLKNELIDP +ALA LTED Sbjct 114 LNSNFSIYDADDSRRLLLMIGRDMGLDVKRHTPRLLANAISNLKNELIDPDRALADLTED 173 Query 181 SDDLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEY 240 SDDL+R VA+VY EYQRRLR+ANALDFDDLIGETVA+LQAFP+IAQ+YRRRFRH+LVDEY Sbjct 174 SDDLSRVVAAVYVEYQRRLRSANALDFDDLIGETVAILQAFPEIAQHYRRRFRHILVDEY 233 Query 241 QDTNHAQYVLVRELVGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTR 300 QDTNHAQYVLVREL G + +PP ELCVVGDADQSIYAFRGATIRNIEDFERDYPD Sbjct 234 QDTNHAQYVLVRELAGHGGSGEVPPAELCVVGDADQSIYAFRGATIRNIEDFERDYPDAT 293 Query 301 TILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAE 360 T+LLEQNYRSTQNILSAAN+VIA N+GRREKRLWTDAG GELIVGYVADNEHDEARFVA+ Sbjct 294 TMLLEQNYRSTQNILSAANAVIACNSGRREKRLWTDAGDGELIVGYVADNEHDEARFVAQ 353 Query 361 EIDALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAY 420 EI+ L++ E+ Y D+AVFYRTNNSSRSLEEV IR GIPYKVVGGVRFYERKEIRDI+AY Sbjct 354 EIEVLSDAGELNYGDIAVFYRTNNSSRSLEEVFIRTGIPYKVVGGVRFYERKEIRDIIAY 413 Query 421 LRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNT 480 LRVLDNPGDAVSLRRILNTPRRGIGDRAEACV+V+AENTG GFG AL AAA+G+VPMLN+ Sbjct 414 LRVLDNPGDAVSLRRILNTPRRGIGDRAEACVSVHAENTGTGFGAALRAAAEGQVPMLNS 473 Query 481 RAEKAIAGFVEMFDELRGRL---DDDLGELVEAVLERTGYRRELEASTDPQELARLDNLN 537 R++ AIAGFV M DELR +L DDDLG LVE VL+RTGYR ELEASTDPQ+LARLDN+N Sbjct 474 RSQNAIAGFVAMIDELRAKLHSGDDDLGGLVELVLDRTGYRAELEASTDPQDLARLDNIN 533 Query 538 ELVSVAHEFSTDRENAAALG---PDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVT 594 ELVSVAHEFS DR NA A P++ED+PD GVLA FLERVSL+AD DEIPEHGAG+VT Sbjct 534 ELVSVAHEFSIDRANALAEQENLPEEEDIPDVGVLAAFLERVSLIADTDEIPEHGAGMVT 593 Query 595 LMTLHTAKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVSRA 654 LMTLHTAKGLEFPVVFVTGWEDGMFPHMR+L + ELSEERRLAYVG+TRARQRLY++RA Sbjct 594 LMTLHTAKGLEFPVVFVTGWEDGMFPHMRSLGDARELSEERRLAYVGLTRARQRLYLTRA 653 Query 655 IVRSSWGQPMLNPESRFLREIPQELIDWRRTAPKPSFSAPVSGAGRFGSARPSPTRSGAS 714 VRSSWGQPMLNPESRFLREIPQ+LIDWRRT S SAPVSGAGRFG+ RP+P RSG Sbjct 654 KVRSSWGQPMLNPESRFLREIPQQLIDWRRTDAAASPSAPVSGAGRFGTPRPAPARSG-- 711 Query 715 RRPLLVLQVGDRVTHDKYGLGRVEEVSGVGESAMSLIDFGSSGRVKLMHNHAPVTKL 771 RPL+VL GDRV+HDKYGLGRVEEVSGVGESAMSLIDFGSSGRVKLMHNHAP+TKL Sbjct 712 NRPLVVLAPGDRVSHDKYGLGRVEEVSGVGESAMSLIDFGSSGRVKLMHNHAPITKL 768 >gi|15826976|ref|NP_301239.1| ATP-dependent DNA helicase [Mycobacterium leprae TN] gi|221229454|ref|YP_002502870.1| putative ATP-dependent DNA helicase [Mycobacterium leprae Br4923] gi|13632801|sp|Q9CD72.1|PCRA_MYCLE RecName: Full=ATP-dependent DNA helicase pcrA gi|13092523|emb|CAC29661.1| putative ATP-dependent DNA helicase [Mycobacterium leprae] gi|219932561|emb|CAR70246.1| putative ATP-dependent DNA helicase [Mycobacterium leprae Br4923] Length=778 Score = 1284 bits (3322), Expect = 0.0, Method: Compositional matrix adjust. Identities = 635/780 (82%), Positives = 688/780 (89%), Gaps = 11/780 (1%) Query 1 MSVHATDAKPPGPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLM 60 MSVH TDAKP S D+LLDGLNPQQRQAVVHEGSPLLIVAGAGSGKT VL RRIAYL+ Sbjct 1 MSVHTTDAKPD--SEVDRLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTTVLARRIAYLI 58 Query 61 AARGVGVGQILAITFTNKAAAEMRERVVGLVGEKA-RYMWVSTFHSTCVRILRNQAALIE 119 AAR VGV QILAITFTNKAAAEMRERV LVG+ MWVSTFHSTCVRILRNQA+LI Sbjct 59 AARSVGVSQILAITFTNKAAAEMRERVARLVGDHTGPSMWVSTFHSTCVRILRNQASLIG 118 Query 120 GLNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTE 179 GLNSNFSIYD DDSR LLQM+G+D+GLDIKRYSPRL+ANAISNLKNELID A+A L+ Sbjct 119 GLNSNFSIYDVDDSRSLLQMIGQDMGLDIKRYSPRLMANAISNLKNELIDAESAVANLSS 178 Query 180 DSDDLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDE 239 D+DDLAR VA+VY EYQRRLR ANALDFDDLIGETV +LQAFPQIA++YRRRFRHVLVDE Sbjct 179 DTDDLARTVATVYGEYQRRLRTANALDFDDLIGETVGILQAFPQIAEHYRRRFRHVLVDE 238 Query 240 YQDTNHAQYVLVRELVG---RDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDY 296 YQDTNHAQYVLVRELVG R+S D +PPGELCVVGDADQSIYAFRG+TI NIEDFERDY Sbjct 239 YQDTNHAQYVLVRELVGHGARNSPDDMPPGELCVVGDADQSIYAFRGSTISNIEDFERDY 298 Query 297 PDTRTILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEAR 356 PDT TILLEQNYRSTQNILSAANSVIARN GRR+KRLWTDAG GELIVGYV+DNEHDEA+ Sbjct 299 PDTTTILLEQNYRSTQNILSAANSVIARNFGRRDKRLWTDAGKGELIVGYVSDNEHDEAK 358 Query 357 FVAEEIDALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRD 416 F+A+EIDAL G EITY+DVAV YR NN SRSLEEV I GIPYKVVGG FYE KEIRD Sbjct 359 FIADEIDALVGGGEITYDDVAVLYRANNLSRSLEEVFIPTGIPYKVVGGFCFYESKEIRD 418 Query 417 IVAYLRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVP 476 ++AYLRVLDNPGDAVS+RRILNTPRRGIGDRAEACV+VYAENTG F DAL A A+GKVP Sbjct 419 LIAYLRVLDNPGDAVSMRRILNTPRRGIGDRAEACVSVYAENTGTSFADALQAVAEGKVP 478 Query 477 MLNTRAEKAIAGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNL 536 MLNTR+ KAIAGFV + D+LR R+DDDLGELVE+VLER+GY RELE+STDPQELARLDNL Sbjct 479 MLNTRSVKAIAGFVALLDDLRCRVDDDLGELVESVLERSGYLRELESSTDPQELARLDNL 538 Query 537 NELVSVAHEFSTDRENAAALG-----PDDEDVPDTGVLADFLERVSLVADADEIPEHGAG 591 NELVS AHEFST++ NAAAL P+DEDVPDTG LA FLE+VSL++D D+IPE+ +G Sbjct 539 NELVSFAHEFSTEQANAAALAKSLHTPEDEDVPDTGALAAFLEKVSLMSDTDQIPENNSG 598 Query 592 VVTLMTLHTAKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYV 651 VVTLMTLH AKGLEFPVVFVTGWEDGM PHMR L +PTELSEERRLAYVGITRARQRLY+ Sbjct 599 VVTLMTLHAAKGLEFPVVFVTGWEDGMLPHMRTLGDPTELSEERRLAYVGITRARQRLYL 658 Query 652 SRAIVRSSWGQPMLNPESRFLREIPQELIDWRRTAPKPSFSAPVSGAGRFGSARPSPTRS 711 SRAI RSSWGQP+LNPESRFLREIP ELIDWRR+ S+S P SGA RFG RPS RS Sbjct 659 SRAITRSSWGQPILNPESRFLREIPPELIDWRRSILTDSYSTPASGASRFGRVRPSSIRS 718 Query 712 GASRRPLLVLQVGDRVTHDKYGLGRVEEVSGVGESAMSLIDFGSSGRVKLMHNHAPVTKL 771 GAS+R LLVL GDRVTHDKYGLGRVEEVSGVGESA+SLIDFGSSGR+KLMHNHAPVTKL Sbjct 719 GASKRALLVLAPGDRVTHDKYGLGRVEEVSGVGESAISLIDFGSSGRIKLMHNHAPVTKL 778 >gi|126437275|ref|YP_001072966.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. JLS] gi|126237075|gb|ABO00476.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. JLS] Length=784 Score = 1278 bits (3308), Expect = 0.0, Method: Compositional matrix adjust. Identities = 643/789 (82%), Positives = 698/789 (89%), Gaps = 23/789 (2%) Query 1 MSVHATDAKPPGPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLM 60 MSV+ T+ + A++LLDGLNPQQRQAV+HEGSPLLIVAGAGSGKTAVLTRRIAYL+ Sbjct 1 MSVNVTEPRSRPDDRAEELLDGLNPQQRQAVLHEGSPLLIVAGAGSGKTAVLTRRIAYLL 60 Query 61 AARGVGVGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEG 120 AAR VGVGQ+LAITFTNKAAAEMRERVVGL+G +AR MWV+TFHSTCVRILRNQA+L+ G Sbjct 61 AARDVGVGQVLAITFTNKAAAEMRERVVGLIGPRARSMWVATFHSTCVRILRNQASLLPG 120 Query 121 LNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTED 180 LNSNFSIYDADDSRRLL M+G+D+GLD K+YSPRLL+N ISNLKNELI P QA A +E Sbjct 121 LNSNFSIYDADDSRRLLLMIGKDMGLDTKKYSPRLLSNGISNLKNELIGPEQAAAEASEA 180 Query 181 SDDLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEY 240 +DDLAR +A VY EYQRRLRAANALDFDDLIGETVAVLQ FPQIAQYYRRRFRH+LVDEY Sbjct 181 ADDLARIIADVYAEYQRRLRAANALDFDDLIGETVAVLQRFPQIAQYYRRRFRHILVDEY 240 Query 241 QDTNHAQYVLVRELVGRDS----NDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDY 296 QDTNHAQYVLVREL G + +DG+ P ELCVVGDADQSIYAFRGATIRNIEDFERDY Sbjct 241 QDTNHAQYVLVRELAGHGAHDTDDDGVAPAELCVVGDADQSIYAFRGATIRNIEDFERDY 300 Query 297 PDTRTILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEAR 356 P+ TILLEQNYRSTQ IL+AANSVIARNAGRREKRLWTD+G GELIVGYVADNEHDEAR Sbjct 301 PNATTILLEQNYRSTQTILNAANSVIARNAGRREKRLWTDSGHGELIVGYVADNEHDEAR 360 Query 357 FVAEEIDALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRD 416 FVA+EID LA+ +YND AVFYRTNNSSR+LEEV IRAGIPYKVVGGVRFYER+EIRD Sbjct 361 FVAQEIDRLADDGH-SYNDFAVFYRTNNSSRALEEVFIRAGIPYKVVGGVRFYERREIRD 419 Query 417 IVAYLRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVP 476 IVAYLRVLDNPGD+VS+RRILNTPRRGIGDRAEACVAVYAENTG F DAL AAA+GKVP Sbjct 420 IVAYLRVLDNPGDSVSMRRILNTPRRGIGDRAEACVAVYAENTGASFNDALQAAAEGKVP 479 Query 477 MLNTRAEKAIAGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNL 536 MLNTR+EK IA FV+M D+LRGRL D+LGELVEAVL+RTGYR ELEAS DPQ+LARLDNL Sbjct 480 MLNTRSEKCIASFVQMLDDLRGRLGDELGELVEAVLDRTGYRAELEASNDPQDLARLDNL 539 Query 537 NELVSVAHEFSTDRENAAALGPD-----DEDVPDTGVLADFLERVSLVADADEIPEHGAG 591 NELVSVAHEFS DR NAAAL D DED+PDTGVLA FLERVSLVADAD+IPEHG+G Sbjct 540 NELVSVAHEFSIDRANAAALAEDLDEPVDEDIPDTGVLAQFLERVSLVADADDIPEHGSG 599 Query 592 VVTLMTLHTAKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYV 651 VVT+MTLHTAKGLEFPVVFVTGWEDGMFPHMRAL +P ELSEERRLAYVGITRARQRLY+ Sbjct 600 VVTMMTLHTAKGLEFPVVFVTGWEDGMFPHMRALGDPNELSEERRLAYVGITRARQRLYL 659 Query 652 SRAIVRSSWGQPMLNPESRFLREIPQELIDWRRTAPKPSFSAPVSGAGRF---------G 702 SRA VRSSWGQPMLNPESRFLREIPQELIDWRRT P PSFSAP GR G Sbjct 660 SRAKVRSSWGQPMLNPESRFLREIPQELIDWRRTDPTPSFSAP----GRMSSGSSGTGFG 715 Query 703 SARPSPTRSGASRRPLLVLQVGDRVTHDKYGLGRVEEVSGVGESAMSLIDFGSSGRVKLM 762 + RPSP RSG ++PL+VL+ GDR+ HDKYGLGRVEEVSGVGESAMSLIDFGS+GRVKLM Sbjct 716 APRPSPMRSGGGKKPLIVLEPGDRINHDKYGLGRVEEVSGVGESAMSLIDFGSAGRVKLM 775 Query 763 HNHAPVTKL 771 HNHAPV KL Sbjct 776 HNHAPVQKL 784 >gi|289749473|ref|ZP_06508851.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis T92] gi|289690060|gb|EFD57489.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis T92] Length=632 Score = 1276 bits (3302), Expect = 0.0, Method: Compositional matrix adjust. Identities = 632/632 (100%), Positives = 632/632 (100%), Gaps = 0/632 (0%) Query 1 MSVHATDAKPPGPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLM 60 MSVHATDAKPPGPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLM Sbjct 1 MSVHATDAKPPGPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLM 60 Query 61 AARGVGVGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEG 120 AARGVGVGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEG Sbjct 61 AARGVGVGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEG 120 Query 121 LNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTED 180 LNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTED Sbjct 121 LNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTED 180 Query 181 SDDLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEY 240 SDDLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEY Sbjct 181 SDDLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEY 240 Query 241 QDTNHAQYVLVRELVGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTR 300 QDTNHAQYVLVRELVGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTR Sbjct 241 QDTNHAQYVLVRELVGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTR 300 Query 301 TILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAE 360 TILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAE Sbjct 301 TILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAE 360 Query 361 EIDALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAY 420 EIDALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAY Sbjct 361 EIDALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAY 420 Query 421 LRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNT 480 LRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNT Sbjct 421 LRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNT 480 Query 481 RAEKAIAGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELV 540 RAEKAIAGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELV Sbjct 481 RAEKAIAGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELV 540 Query 541 SVAHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHT 600 SVAHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHT Sbjct 541 SVAHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHT 600 Query 601 AKGLEFPVVFVTGWEDGMFPHMRALDNPTELS 632 AKGLEFPVVFVTGWEDGMFPHMRALDNPTELS Sbjct 601 AKGLEFPVVFVTGWEDGMFPHMRALDNPTELS 632 >gi|289753005|ref|ZP_06512383.1| ATP-dependent DNA helicase pcrA [Mycobacterium tuberculosis EAS054] gi|289693592|gb|EFD61021.1| ATP-dependent DNA helicase pcrA [Mycobacterium tuberculosis EAS054] Length=650 Score = 1276 bits (3301), Expect = 0.0, Method: Compositional matrix adjust. Identities = 632/632 (100%), Positives = 632/632 (100%), Gaps = 0/632 (0%) Query 1 MSVHATDAKPPGPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLM 60 MSVHATDAKPPGPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLM Sbjct 1 MSVHATDAKPPGPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLM 60 Query 61 AARGVGVGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEG 120 AARGVGVGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEG Sbjct 61 AARGVGVGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEG 120 Query 121 LNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTED 180 LNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTED Sbjct 121 LNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTED 180 Query 181 SDDLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEY 240 SDDLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEY Sbjct 181 SDDLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEY 240 Query 241 QDTNHAQYVLVRELVGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTR 300 QDTNHAQYVLVRELVGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTR Sbjct 241 QDTNHAQYVLVRELVGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTR 300 Query 301 TILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAE 360 TILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAE Sbjct 301 TILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAE 360 Query 361 EIDALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAY 420 EIDALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAY Sbjct 361 EIDALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAY 420 Query 421 LRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNT 480 LRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNT Sbjct 421 LRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNT 480 Query 481 RAEKAIAGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELV 540 RAEKAIAGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELV Sbjct 481 RAEKAIAGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELV 540 Query 541 SVAHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHT 600 SVAHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHT Sbjct 541 SVAHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHT 600 Query 601 AKGLEFPVVFVTGWEDGMFPHMRALDNPTELS 632 AKGLEFPVVFVTGWEDGMFPHMRALDNPTELS Sbjct 601 AKGLEFPVVFVTGWEDGMFPHMRALDNPTELS 632 >gi|108801294|ref|YP_641491.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. MCS] gi|119870445|ref|YP_940397.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. KMS] gi|108771713|gb|ABG10435.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. MCS] gi|119696534|gb|ABL93607.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. KMS] Length=785 Score = 1269 bits (3284), Expect = 0.0, Method: Compositional matrix adjust. Identities = 642/786 (82%), Positives = 697/786 (89%), Gaps = 16/786 (2%) Query 1 MSVHATDAKPPGPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLM 60 MSV+ T+ A++LLDGLNPQQRQAV+HEGSPLLIVAGAGSGKTAVLTRRIAYL+ Sbjct 1 MSVNVTEPSSRPDDRAEELLDGLNPQQRQAVLHEGSPLLIVAGAGSGKTAVLTRRIAYLL 60 Query 61 AARGVGVGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEG 120 AAR VGVGQ+LAITFTNKAAAEMRERVV LVG +AR MWV+TFHSTCVRILRNQA+L+ G Sbjct 61 AARDVGVGQVLAITFTNKAAAEMRERVVHLVGPRARSMWVATFHSTCVRILRNQASLLPG 120 Query 121 LNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTED 180 LNSNFSIYDADDSRRLL M+G+D+GLD K+YSPRLL+N ISNLKNELI P QA A +E Sbjct 121 LNSNFSIYDADDSRRLLLMIGKDMGLDTKKYSPRLLSNGISNLKNELIGPEQAAAEASEA 180 Query 181 SDDLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEY 240 +DDLAR +A VY EYQRRLRAANALDFDDLIGETVAVLQ FPQIAQYYRRRFRH+LVDEY Sbjct 181 ADDLARIIADVYAEYQRRLRAANALDFDDLIGETVAVLQRFPQIAQYYRRRFRHILVDEY 240 Query 241 QDTNHAQYVLVRELVGRDSNDG--IPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPD 298 QDTNHAQYVLVRELVG ++D + P ELCVVGDADQSIYAFRGATIRNIEDFERDYP+ Sbjct 241 QDTNHAQYVLVRELVGGGAHDTGEVAPAELCVVGDADQSIYAFRGATIRNIEDFERDYPN 300 Query 299 TRTILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFV 358 TILLEQNYRSTQ IL+AANSVIARNAGRREKRLWTD+G GELIVGYVADNEHDEARFV Sbjct 301 ATTILLEQNYRSTQTILNAANSVIARNAGRREKRLWTDSGHGELIVGYVADNEHDEARFV 360 Query 359 AEEIDALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIV 418 A+EID LA+ +YND AVFYRTNN+SR+LEEV IRAGIPYKVVGGVRFYER+EIRDIV Sbjct 361 AQEIDRLADDGH-SYNDFAVFYRTNNNSRALEEVFIRAGIPYKVVGGVRFYERREIRDIV 419 Query 419 AYLRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPML 478 AYLRVLDNPGD+VS+RRILNTPRRGIGDRAEACVAVYAENTG F DAL AAA+GKVPML Sbjct 420 AYLRVLDNPGDSVSMRRILNTPRRGIGDRAEACVAVYAENTGASFNDALQAAAEGKVPML 479 Query 479 NTRAEKAIAGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNE 538 NTR+EK IA FV+M D+LRGRL D+LGELVEAVL+RTGYR ELEAS DPQ+LARLDNLNE Sbjct 480 NTRSEKCIASFVQMLDDLRGRLGDELGELVEAVLDRTGYRAELEASNDPQDLARLDNLNE 539 Query 539 LVSVAHEFSTDRENAAALGPD-----DEDVPDTGVLADFLERVSLVADADEIPEHGAGVV 593 LVSVAHEFS DR NAAAL D DED+PDTGVLA FLERVSLVADAD+IPEHG+GVV Sbjct 540 LVSVAHEFSIDRANAAALAEDLDEPVDEDIPDTGVLAQFLERVSLVADADDIPEHGSGVV 599 Query 594 TLMTLHTAKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVSR 653 T+MTLHTAKGLEFPVVFVTGWEDGMFPHMRAL +P ELSEERRLAYVGITRARQRLY+SR Sbjct 600 TMMTLHTAKGLEFPVVFVTGWEDGMFPHMRALGDPNELSEERRLAYVGITRARQRLYLSR 659 Query 654 AIVRSSWGQPMLNPESRFLREIPQELIDWRRTAP---KPSFSAP-----VSGAGRFGSAR 705 A VRSSWGQPMLNPESRFLREIPQELIDWRRT P +PSFSAP S FG+ R Sbjct 660 AKVRSSWGQPMLNPESRFLREIPQELIDWRRTDPENRRPSFSAPSRMSSGSSGTSFGAPR 719 Query 706 PSPTRSGASRRPLLVLQVGDRVTHDKYGLGRVEEVSGVGESAMSLIDFGSSGRVKLMHNH 765 PSP RSG ++PL+VL+ GDR+ HDKYGLGRVEEVSGVGESAMSLIDFGS+GRVKLMHNH Sbjct 720 PSPMRSGGGKKPLIVLEPGDRINHDKYGLGRVEEVSGVGESAMSLIDFGSAGRVKLMHNH 779 Query 766 APVTKL 771 APV KL Sbjct 780 APVQKL 785 >gi|254773951|ref|ZP_05215467.1| ATP-dependent DNA helicase PcrA [Mycobacterium avium subsp. avium ATCC 25291] Length=710 Score = 1266 bits (3277), Expect = 0.0, Method: Compositional matrix adjust. Identities = 633/710 (90%), Positives = 673/710 (95%), Gaps = 5/710 (0%) Query 67 VGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEGLNSNFS 126 +GQ+LAITFTNKAAAEMRERVV LVG +AR MWVSTFHSTCVRILRNQA+LIEGLNSNFS Sbjct 1 MGQVLAITFTNKAAAEMRERVVRLVGNRARAMWVSTFHSTCVRILRNQASLIEGLNSNFS 60 Query 127 IYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTEDSDDLAR 186 IYDADDSRRLLQM+GRD+GLDIKRYSPRLLANAISNLKNELIDP A+A LT+DSD+L+R Sbjct 61 IYDADDSRRLLQMIGRDMGLDIKRYSPRLLANAISNLKNELIDPAAAVANLTDDSDELSR 120 Query 187 AVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEYQDTNHA 246 VASVY EYQRRLRAANALDFDDLIGETVAVL+AFPQIAQ+YRRRFRHVLVDEYQDTNHA Sbjct 121 TVASVYGEYQRRLRAANALDFDDLIGETVAVLRAFPQIAQHYRRRFRHVLVDEYQDTNHA 180 Query 247 QYVLVRELVGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTRTILLEQ 306 QYVLVRELVG D+ DG+PPGELCVVGDADQSIYAFRGATIRNIEDFERDYPD TILLEQ Sbjct 181 QYVLVRELVGTDTEDGVPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDATTILLEQ 240 Query 307 NYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAEEIDALA 366 NYRSTQNILSAANSVIARN+GRR+KRLWTDAGAGELIVGYVADNEHDEARFVAEEIDALA Sbjct 241 NYRSTQNILSAANSVIARNSGRRDKRLWTDAGAGELIVGYVADNEHDEARFVAEEIDALA 300 Query 367 EGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAYLRVLDN 426 + EITYNDVAVFYRTNNSSRS EEV IRAGIPYKVVGGVRFYERKEIRDI+AYLRVLDN Sbjct 301 QKGEITYNDVAVFYRTNNSSRSFEEVFIRAGIPYKVVGGVRFYERKEIRDIIAYLRVLDN 360 Query 427 PGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRAEKAI 486 PGDAVS+RRILNTPRRGIGDRAEACVAVYAENTG F DALVAAA+GKVPMLN+RAEKAI Sbjct 361 PGDAVSMRRILNTPRRGIGDRAEACVAVYAENTGASFADALVAAAEGKVPMLNSRAEKAI 420 Query 487 AGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELVSVAHEF 546 AGFVE+ D+LRGRLDDDLG+LVE+VLERTGYRRELE+STDPQELARLDNLNELVSVAHEF Sbjct 421 AGFVELLDDLRGRLDDDLGDLVESVLERTGYRRELESSTDPQELARLDNLNELVSVAHEF 480 Query 547 STDRENAAAL-----GPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHTA 601 STDR NAAAL DDEDVPDTGVLA+FLERVSLV+D+DEIPE GAG+VTLMTLHTA Sbjct 481 STDRANAAALDESLDAADDEDVPDTGVLAEFLERVSLVSDSDEIPEDGAGMVTLMTLHTA 540 Query 602 KGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVSRAIVRSSWG 661 KGLEFPVVFVTGWEDGMFPHMR+LD+P ELSEERRLAYVGITRARQRLY+SRAIVRSSWG Sbjct 541 KGLEFPVVFVTGWEDGMFPHMRSLDDPVELSEERRLAYVGITRARQRLYLSRAIVRSSWG 600 Query 662 QPMLNPESRFLREIPQELIDWRRTAPKPSFSAPVSGAGRFGSARPSPTRSGASRRPLLVL 721 QPMLNPESRFLREIPQELI+WRRTAP PSFSAPVSGAGRFG+ R +PTR+G S+RPLLVL Sbjct 601 QPMLNPESRFLREIPQELIEWRRTAPAPSFSAPVSGAGRFGTPRAAPTRAGMSKRPLLVL 660 Query 722 QVGDRVTHDKYGLGRVEEVSGVGESAMSLIDFGSSGRVKLMHNHAPVTKL 771 GDRVTHDKYGLGRVEEVSG GESAMSLIDFGSSGRVKLMHNHAP++KL Sbjct 661 APGDRVTHDKYGLGRVEEVSGAGESAMSLIDFGSSGRVKLMHNHAPISKL 710 >gi|118471354|ref|YP_889771.1| ATP-dependent DNA helicase PcrA [Mycobacterium smegmatis str. MC2 155] gi|118172641|gb|ABK73537.1| ATP-dependent DNA helicase PcrA [Mycobacterium smegmatis str. MC2 155] Length=783 Score = 1266 bits (3277), Expect = 0.0, Method: Compositional matrix adjust. Identities = 632/776 (82%), Positives = 688/776 (89%), Gaps = 15/776 (1%) Query 11 PGPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQI 70 P + DQLLDGLNPQQRQAV+HEGSPLLIVAGAGSGKTAVLTRRIAYL+A R VGVGQ+ Sbjct 8 PFAAETDQLLDGLNPQQRQAVLHEGSPLLIVAGAGSGKTAVLTRRIAYLLAEREVGVGQV 67 Query 71 LAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDA 130 LAITFTNKAAAEMRERVV LVG +A+ MWVSTFHSTCVRILRNQA+L+ GLNSNFSIYD+ Sbjct 68 LAITFTNKAAAEMRERVVQLVGPRAKAMWVSTFHSTCVRILRNQASLLPGLNSNFSIYDS 127 Query 131 DDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTEDSDDLARAVAS 190 DDSRRLL M+G+DLGLD KRYSPRLLAN ISNLKNELI P QA A +E SD++A +A Sbjct 128 DDSRRLLMMIGKDLGLDTKRYSPRLLANGISNLKNELIGPEQAAAEASEASDEMATVIAQ 187 Query 191 VYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEYQDTNHAQYVL 250 VY EYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRH+LVDEYQDTNHAQYVL Sbjct 188 VYGEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHILVDEYQDTNHAQYVL 247 Query 251 VRELVGR--DSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTRTILLEQNY 308 VRELVG + +DG+PP ELCVVGDADQSIYAFRGATIRNIEDFERD+PD TILLEQNY Sbjct 248 VRELVGHHLEDHDGVPPSELCVVGDADQSIYAFRGATIRNIEDFERDFPDATTILLEQNY 307 Query 309 RSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAEEIDALAEG 368 RSTQ IL+AAN+VIARN GRREKRLWTDAG GELIVGYVADNEHDEARFVA+EIDAL + Sbjct 308 RSTQTILNAANAVIARNTGRREKRLWTDAGQGELIVGYVADNEHDEARFVADEIDALTDR 367 Query 369 SEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAYLRVLDNPG 428 YND+AVFYRTNNSSR+LEEV IRAGIPYKVVGGVRFYER+EIRDIVAYLRVLDNPG Sbjct 368 HGYNYNDIAVFYRTNNSSRALEEVFIRAGIPYKVVGGVRFYERREIRDIVAYLRVLDNPG 427 Query 429 DAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRAEKAIAG 488 D+VS+RRILNTPRRGIGDRAEACVAVYAENTGV F +AL AAA+G+VPMLNTR+EK IA Sbjct 428 DSVSMRRILNTPRRGIGDRAEACVAVYAENTGVSFNEALQAAAEGRVPMLNTRSEKCIAS 487 Query 489 FVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELVSVAHEFST 548 FV+M D+LRG+LD++LG+LVEAVLERTGYRRELEAS+DPQ+LARLDNLNELVSVAHEFS Sbjct 488 FVQMLDDLRGKLDEELGDLVEAVLERTGYRRELEASSDPQDLARLDNLNELVSVAHEFSI 547 Query 549 DRENAAALG-----PDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHTAKG 603 D NA AL P DED+PDTGVLA FLERVSLVADAD+IPE G+GVVT+MTLHTAKG Sbjct 548 DLANAQALAEESDEPVDEDIPDTGVLAQFLERVSLVADADDIPEEGSGVVTMMTLHTAKG 607 Query 604 LEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVSRAIVRSSWGQP 663 LEFP VFVTGWEDGMFPHMRAL +P ELSEERRLAYVGITRARQRLY+SRA VRSSWGQP Sbjct 608 LEFPAVFVTGWEDGMFPHMRALGDPNELSEERRLAYVGITRARQRLYLSRAKVRSSWGQP 667 Query 664 MLNPESRFLREIPQELIDWRRT-APKPSFSAPVSGAGRFGSA------RPSPTRSGASR- 715 MLNPESRFLREIPQELIDWRR AP P+++AP + G RPSP R G R Sbjct 668 MLNPESRFLREIPQELIDWRRIEAPTPAYAAPGRMSSSGGGGIGFGSPRPSPNRPGGGRN 727 Query 716 RPLLVLQVGDRVTHDKYGLGRVEEVSGVGESAMSLIDFGSSGRVKLMHNHAPVTKL 771 +PL+VLQ GDRVTHDKYGLGRVEEV+G GESAMSLIDFGS+GRVKLMHNHAP+ KL Sbjct 728 KPLMVLQPGDRVTHDKYGLGRVEEVAGTGESAMSLIDFGSAGRVKLMHNHAPLQKL 783 >gi|169628149|ref|YP_001701798.1| putative ATP-dependent DNA helicase PcrA [Mycobacterium abscessus ATCC 19977] gi|169240116|emb|CAM61144.1| Putative ATP-dependent DNA helicase PcrA [Mycobacterium abscessus] Length=807 Score = 1142 bits (2954), Expect = 0.0, Method: Compositional matrix adjust. Identities = 593/786 (76%), Positives = 649/786 (83%), Gaps = 40/786 (5%) Query 22 GLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITFTNKAAA 81 GLNPQQR AV H+G+PLLIVAGAGSGKTAVLTRRIAYL+AAR V GQILAITFTNKAAA Sbjct 26 GLNPQQRAAVAHQGAPLLIVAGAGSGKTAVLTRRIAYLLAARDVSPGQILAITFTNKAAA 85 Query 82 EMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRRLLQMVG 141 EMRERV +V + + MWVSTFHS+CVRILRNQA+L+ GLNSNFSIYD+DDSRRLLQM+G Sbjct 86 EMRERVGRIVANRVQSMWVSTFHSSCVRILRNQASLLPGLNSNFSIYDSDDSRRLLQMIG 145 Query 142 RDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLT------EDSDDLARAVASVYDEY 195 RD+GLDIKRYSPRLLA AISNLKNELI P QA+A LT E DL + VA VY EY Sbjct 146 RDMGLDIKRYSPRLLATAISNLKNELISPEQAVANLTAGGQDGELRGDLPQIVADVYGEY 205 Query 196 QRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEYQDTNHAQYVLVRELV 255 QRRLRAANALDFDDLIGETVAVLQ FPQIAQ+YRR+FRH+LVDEYQDTNHAQYVLVRELV Sbjct 206 QRRLRAANALDFDDLIGETVAVLQQFPQIAQFYRRKFRHILVDEYQDTNHAQYVLVRELV 265 Query 256 GRDSN-----DGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTRTILLEQNYRS 310 G + DG P ELCVVGDADQSIYAFRGATIRNIE+FERDYP+ +TILLEQNYRS Sbjct 266 GAHVDRTVDPDGPEPAELCVVGDADQSIYAFRGATIRNIEEFERDYPNAKTILLEQNYRS 325 Query 311 TQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAEEIDALAEGSE 370 TQNILSAANSVIA+NA RREKRLWTD+G GELIVGYVADNEHDEA F+A EID L + S+ Sbjct 326 TQNILSAANSVIAKNANRREKRLWTDSGEGELIVGYVADNEHDEASFIAREIDGLFDRSD 385 Query 371 ITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAYLRVLDNPGDA 430 Y D+AVFYRTNN+SRSLEE+ IR GIPYKVVGGVRFYERKEIRDIVAYLRVL NPGDA Sbjct 386 ANYGDIAVFYRTNNNSRSLEEIFIRTGIPYKVVGGVRFYERKEIRDIVAYLRVLTNPGDA 445 Query 431 VSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRAEKAIAGFV 490 VSLRRILNTPRRGIGDRAEACVAV+AE G+GFG+AL AA GKV MLN+R+EKAIA F+ Sbjct 446 VSLRRILNTPRRGIGDRAEACVAVHAETNGIGFGEALADAAAGKVAMLNSRSEKAIAAFM 505 Query 491 EMFDELRG--RLDD-----DLGELVEAVLERTGYRRELEASTDPQELARLDNLNELVSVA 543 +M D++R R DD D+G++VEAVL TGYR ELE S+DPQELARLDNLNELVSVA Sbjct 506 DMLDQIRVTLRTDDPGALPDIGDVVEAVLNHTGYRYELENSSDPQELARLDNLNELVSVA 565 Query 544 HEFSTDRENAAALGP----DDEDV-PDTGVLADFLERVSLVADADEIPEHGAGVVTLMTL 598 HEFS D NA A G DDEDV G L FLERVSLVADADE+PE AGVVT+MTL Sbjct 566 HEFSADAANAQAAGEDVPGDDEDVGAPPGSLEAFLERVSLVADADELPESSAGVVTMMTL 625 Query 599 HTAKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVSRAIVRS 658 HTAKGLEFPVVFVTGWEDGMFPHMRAL +P EL+EERRLAYVGITRARQRLY+SRA VRS Sbjct 626 HTAKGLEFPVVFVTGWEDGMFPHMRALGDPVELAEERRLAYVGITRARQRLYLSRAKVRS 685 Query 659 SWGQPMLNPESRFLREIPQELIDWRRTAPKPSFSAPVSGAGRFGSAR------------- 705 SWGQPM+NPESRFL+EIPQELIDWRRT P P A +G G Sbjct 686 SWGQPMMNPESRFLQEIPQELIDWRRTDPLPGRIATGAGGYGGGGYGSGGSRAGGGSLGA 745 Query 706 PSPTRSGASRRPLLVLQVGDRVTHDKYGLGRVEEVSGVGESAMSLIDFGSSGRVKLMHNH 765 PS R+ +PL+VL+ GDRV+HDKYGLGRV EV+GVGESA SLIDFGS GRVKLMHN Sbjct 746 PSKKRT----KPLMVLEAGDRVSHDKYGLGRVVEVTGVGESATSLIDFGSEGRVKLMHNF 801 Query 766 APVTKL 771 APV KL Sbjct 802 APVQKL 807 >gi|312138580|ref|YP_004005916.1| uvrd/rep family ATP-dependent DNA helicase [Rhodococcus equi 103S] gi|311887919|emb|CBH47231.1| UvrD/Rep family ATP-dependent DNA helicase [Rhodococcus equi 103S] Length=824 Score = 1088 bits (2813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 567/799 (71%), Positives = 634/799 (80%), Gaps = 42/799 (5%) Query 15 PADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAIT 74 PAD LL+GLNPQQR+AV+H GSPLLIVAGAGSGKTAVLTRRIAYL+A RGV GQILAIT Sbjct 26 PADALLEGLNPQQREAVLHAGSPLLIVAGAGSGKTAVLTRRIAYLLAERGVMPGQILAIT 85 Query 75 FTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSR 134 FTNKAAAEMRERV LVG +A MWVSTFHS+CVRILR QA L+ GLNSNFSIYDADDSR Sbjct 86 FTNKAAAEMRERVAQLVGPRANSMWVSTFHSSCVRILRAQAGLLHGLNSNFSIYDADDSR 145 Query 135 RLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTEDSDDLARAVASVYDE 194 RLL M+ +DL +D KRYS RLLA ISNLKNELIDP +A A DS+DL + VA VY Sbjct 146 RLLTMISKDLEIDTKRYSARLLATKISNLKNELIDPEEAAADADRDSNDLDKLVARVYAH 205 Query 195 YQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEYQDTNHAQYVLVREL 254 YQ+RLRAANALDFDDLIGETV +LQA PQ+A+YYRRRFRHVLVDEYQDTNHAQYVLVREL Sbjct 206 YQQRLRAANALDFDDLIGETVGLLQANPQVAEYYRRRFRHVLVDEYQDTNHAQYVLVREL 265 Query 255 VGRDSND--GIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTRTILLEQNYRSTQ 312 VG +S+D +PPGELCVVGDADQSIYAFRGATIRNIE+FERDYPD RTILLEQNYRSTQ Sbjct 266 VGEESDDPYAVPPGELCVVGDADQSIYAFRGATIRNIEEFERDYPDARTILLEQNYRSTQ 325 Query 313 NILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAEEIDALAEGSEIT 372 NILSAANSVI+RN GRREKRLWTD+G GELI GYVADNEHDEA+FVA EID L + E Sbjct 326 NILSAANSVISRNTGRREKRLWTDSGEGELITGYVADNEHDEAQFVASEIDRLVDAGETK 385 Query 373 YNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAYLRVLDNPGDAVS 432 + +VAVFYRTNNSSR+LEE+ IR GIPYKVVGG RFYERKE+RDIVAYLRVL N D VS Sbjct 386 FGEVAVFYRTNNSSRALEEIFIRLGIPYKVVGGTRFYERKEVRDIVAYLRVLANEDDTVS 445 Query 433 LRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRAEKAIAGFVEM 492 LRRILNTPRRGIGDRAEACV+VYAE GVGF +AL AA +G VP+LNTR++KAI F+E+ Sbjct 446 LRRILNTPRRGIGDRAEACVSVYAEQKGVGFAEALRAAGEGSVPLLNTRSQKAITSFLEL 505 Query 493 FDELR---------GRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELVSVA 543 D LR G D+GE+VE VL+RTGYRRELEAS+DPQ+ ARLDNLNELVSVA Sbjct 506 LDGLRALMVSTDADGNDLTDIGEVVEGVLDRTGYRRELEASSDPQDGARLDNLNELVSVA 565 Query 544 HEFSTDRENAAALGP---------DDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVT 594 EFS+D NAAA +DE PD G LA FLERVSLVAD+D++P+ G GVVT Sbjct 566 REFSSDARNAAAFAEENAAEGDVVEDEGQPDPGSLAAFLERVSLVADSDQVPDEGEGVVT 625 Query 595 LMTLHTAKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVSRA 654 LMTLHTAKGLEFPVVFVTGWEDG FPHMRAL +P ELSEERRLAYVGITRAR RLY++RA Sbjct 626 LMTLHTAKGLEFPVVFVTGWEDGQFPHMRALGDPAELSEERRLAYVGITRARHRLYLTRA 685 Query 655 IVRSSWGQPMLNPESRFLREIPQELIDWRRTAP------------KPSFSAPVSGAGRFG 702 IVRS+WGQP+ NPESRFL+EIP +L++WRR P +P G G G Sbjct 686 IVRSAWGQPVTNPESRFLQEIPADLVNWRREDPGVLGTGGAIGGGRPRGQGYGGGFGGGG 745 Query 703 SARPSPTRSGAS---------RRPLLVLQVGDRVTHDKYGLGRVEEVSGVGESAMSLIDF 753 + S RSGAS R LVL VGDRV+HDKYGLG+V E G G +A IDF Sbjct 746 AGFGSTGRSGASSPSFGAPRGRNNNLVLAVGDRVSHDKYGLGKVLETKGAGPTATVTIDF 805 Query 754 GSSGRVKLMH-NHAPVTKL 771 GS+G+V+LM P+ KL Sbjct 806 GSAGKVRLMLIGGVPMVKL 824 >gi|325676354|ref|ZP_08156033.1| ATP-dependent DNA helicase [Rhodococcus equi ATCC 33707] gi|325552915|gb|EGD22598.1| ATP-dependent DNA helicase [Rhodococcus equi ATCC 33707] Length=824 Score = 1087 bits (2812), Expect = 0.0, Method: Compositional matrix adjust. Identities = 567/799 (71%), Positives = 634/799 (80%), Gaps = 42/799 (5%) Query 15 PADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAIT 74 PAD LL+GLNPQQR+AV+H GSPLLIVAGAGSGKTAVLTRRIAYL+A RGV GQILAIT Sbjct 26 PADALLEGLNPQQREAVLHAGSPLLIVAGAGSGKTAVLTRRIAYLLAERGVMPGQILAIT 85 Query 75 FTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSR 134 FTNKAAAEMRERV LVG +A MWVSTFHS+CVRILR QA L+ GLNSNFSIYDADDSR Sbjct 86 FTNKAAAEMRERVAQLVGPRANSMWVSTFHSSCVRILRAQAGLLHGLNSNFSIYDADDSR 145 Query 135 RLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTEDSDDLARAVASVYDE 194 RLL M+ +DL +D KRYS RLLA ISNLKNELIDP +A A DS+DL + VA VY Sbjct 146 RLLTMISKDLEIDTKRYSARLLATKISNLKNELIDPEEAAADADRDSNDLDKLVARVYAH 205 Query 195 YQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEYQDTNHAQYVLVREL 254 YQ+RLRAANALDFDDLIGETV +LQA PQ+A+YYRRRFRHVLVDEYQDTNHAQYVLVREL Sbjct 206 YQQRLRAANALDFDDLIGETVGLLQANPQVAEYYRRRFRHVLVDEYQDTNHAQYVLVREL 265 Query 255 VGRDSND--GIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTRTILLEQNYRSTQ 312 VG +S+D +PPGELCVVGDADQSIYAFRGATIRNIE+FERDYPD RTILLEQNYRSTQ Sbjct 266 VGEESDDPYAVPPGELCVVGDADQSIYAFRGATIRNIEEFERDYPDARTILLEQNYRSTQ 325 Query 313 NILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAEEIDALAEGSEIT 372 NILSAANSVI+RN GRREKRLWTD+G GELI GYVADNEHDEA+FVA EID L + E Sbjct 326 NILSAANSVISRNTGRREKRLWTDSGEGELITGYVADNEHDEAQFVASEIDRLVDAGETK 385 Query 373 YNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAYLRVLDNPGDAVS 432 + +VAVFYRTNNSSR+LEE+ IR GIPYKVVGG RFYERKE+RDIVAYLRVL N D VS Sbjct 386 FGEVAVFYRTNNSSRALEEIFIRLGIPYKVVGGTRFYERKEVRDIVAYLRVLANEDDTVS 445 Query 433 LRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRAEKAIAGFVEM 492 LRRILNTPRRGIGDRAEACV+VYAE GVGF +AL AA +G VP+LNTR++KAIA F+E+ Sbjct 446 LRRILNTPRRGIGDRAEACVSVYAEQKGVGFAEALRAAGEGSVPLLNTRSQKAIASFLEL 505 Query 493 FDELR---------GRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELVSVA 543 D LR G D+GE+VE VL+RTGYRRELE S+DPQ+ ARLDNLNELVSVA Sbjct 506 LDGLRALMVSTDADGNDLTDIGEVVEGVLDRTGYRRELEVSSDPQDGARLDNLNELVSVA 565 Query 544 HEFSTDRENAAALGP---------DDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVT 594 EFS+D NAAA +DE PD G LA FLERVSLVAD+D++P+ G GVVT Sbjct 566 REFSSDARNAAAFAEENAAEGDVVEDEGQPDPGSLAAFLERVSLVADSDQVPDEGEGVVT 625 Query 595 LMTLHTAKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVSRA 654 LMTLHTAKGLEFPVVFVTGWEDG FPHMRAL +P ELSEERRLAYVGITRAR RLY++RA Sbjct 626 LMTLHTAKGLEFPVVFVTGWEDGQFPHMRALGDPAELSEERRLAYVGITRARHRLYLTRA 685 Query 655 IVRSSWGQPMLNPESRFLREIPQELIDWRRTAP------------KPSFSAPVSGAGRFG 702 IVRS+WGQP+ NPESRFL+EIP +L++WRR P +P G G G Sbjct 686 IVRSAWGQPVTNPESRFLQEIPADLVNWRREDPGVLGTGGAIGGGRPRGQGYGGGFGGGG 745 Query 703 SARPSPTRSGAS---------RRPLLVLQVGDRVTHDKYGLGRVEEVSGVGESAMSLIDF 753 + S RSGAS R LVL VGDRV+HDKYGLG+V E G G +A IDF Sbjct 746 AGFGSTGRSGASSPSFGAPRGRNNNLVLAVGDRVSHDKYGLGKVLETKGAGPTATVTIDF 805 Query 754 GSSGRVKLMH-NHAPVTKL 771 GS+G+V+LM P+ KL Sbjct 806 GSAGKVRLMLIGGVPMVKL 824 >gi|54026969|ref|YP_121211.1| putative ATP-dependent DNA helicase [Nocardia farcinica IFM 10152] gi|54018477|dbj|BAD59847.1| putative ATP-dependent DNA helicase [Nocardia farcinica IFM 10152] Length=842 Score = 1080 bits (2794), Expect = 0.0, Method: Compositional matrix adjust. Identities = 559/791 (71%), Positives = 628/791 (80%), Gaps = 43/791 (5%) Query 17 DQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITFT 76 ++LLDGLNPQQR AVVH GSPLLIVAGAGSGKTAVLTRRIAYL+AAR V GQILAITFT Sbjct 48 ERLLDGLNPQQRAAVVHAGSPLLIVAGAGSGKTAVLTRRIAYLLAARDVSPGQILAITFT 107 Query 77 NKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRRL 136 NKAAAEMRERV GLVG +A MWVSTFHS+CVRILR QAAL+ GLNSNFSIYDADDSRRL Sbjct 108 NKAAAEMRERVTGLVGPRAATMWVSTFHSSCVRILRMQAALLPGLNSNFSIYDADDSRRL 167 Query 137 LQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTEDSDDLARAVASVYDEYQ 196 L M+ RDL +D K+YS RLL AISNLKNELI P QA A D +L VA VY EYQ Sbjct 168 LTMISRDLDIDTKKYSARLLVTAISNLKNELIGPEQASADAESDESELPGLVARVYTEYQ 227 Query 197 RRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEYQDTNHAQYVLVRELVG 256 RRLRAANALDFDDLIGETVA+LQ PQ+A+YYRRRFRHVLVDEYQDTNHAQYVLVRELVG Sbjct 228 RRLRAANALDFDDLIGETVALLQNHPQVAEYYRRRFRHVLVDEYQDTNHAQYVLVRELVG 287 Query 257 R-----DSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTRTILLEQNYRST 311 D+ D +PP ELCVVGDADQSIYAFRGATIRNIE+FERD+PD TILLEQNYRST Sbjct 288 HHSAADDTEDAVPPSELCVVGDADQSIYAFRGATIRNIEEFERDFPDAETILLEQNYRST 347 Query 312 QNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAEEIDALAEGSEI 371 QNILSAAN+VIARN GRREKRLWTD+G G+LIVGYVADNEHDEA FVA EID L + E Sbjct 348 QNILSAANAVIARNEGRREKRLWTDSGEGDLIVGYVADNEHDEASFVAREIDRLVDQGEA 407 Query 372 TYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAYLRVLDNPGDAV 431 Y DVAVFYRTNN+SR+LEE+ IR G+PYKVVGGVRFYERKE+RDIVAYLRVL+NP DAV Sbjct 408 NYGDVAVFYRTNNNSRALEEIFIRMGLPYKVVGGVRFYERKEVRDIVAYLRVLENPDDAV 467 Query 432 SLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRAEKAIAGFVE 491 SLRRILNTPRRGIGDRAEACVAV+AE G+GF AL AA+GKV +LNTRA++AIAGF++ Sbjct 468 SLRRILNTPRRGIGDRAEACVAVHAEQRGIGFAAALRDAAEGKVALLNTRAQRAIAGFLD 527 Query 492 MFDELR--GRLDD----DLGELVEAVLERTGYRRELEASTDPQELARLDNLNELVSVAHE 545 + +E+R G D D+G +VEAVL+RTGYR ELEAS DPQ+ ARLDNLNELVSVA E Sbjct 528 LLEEIRAAGEQADADFPDVGNVVEAVLDRTGYRAELEASDDPQDGARLDNLNELVSVARE 587 Query 546 FSTDRENAAALGPDD-------EDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTL 598 FS++ N A ++ E PD G LA FLERVSLVAD D+IP+ GAGVVT+MTL Sbjct 588 FSSEAYNNAVAAREEGILPEQAEGEPDPGSLAAFLERVSLVADTDQIPDEGAGVVTMMTL 647 Query 599 HTAKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVSRAIVRS 658 HTAKGLEFPVVFVTGWEDG FPHMRAL +PTEL+EERRLAYVGITRARQRLY++RA+VRS Sbjct 648 HTAKGLEFPVVFVTGWEDGQFPHMRALGDPTELAEERRLAYVGITRARQRLYLTRAVVRS 707 Query 659 SWGQPMLNPESRFLREIPQELIDWRRTAPKPS----------------------FSAPVS 696 WGQP+ NPESRFL+EIP LI+WRR P P+ +S P Sbjct 708 GWGQPVSNPESRFLQEIPDHLIEWRRLEPSPATRGIRKRGGDEGLERDWTRGDGWSEPRP 767 Query 697 GAGRFGSARPSPTRSGASRRPL-LVLQVGDRVTHDKYGLGRVEEVSGVGESAMSLIDFGS 755 G G RP+P GASR LVL VGDRV+ DKYGLGRV G G A IDFG+ Sbjct 768 GVRDRGPRRPAP--GGASRNNTNLVLAVGDRVSDDKYGLGRVVAADGFGPLATVTIDFGT 825 Query 756 SGRVKLMHNHA 766 +G+++L+ ++ Sbjct 826 AGKIRLIPQYS 836 >gi|111022536|ref|YP_705508.1| ATP-dependent DNA helicase [Rhodococcus jostii RHA1] gi|110822066|gb|ABG97350.1| probable ATP-dependent DNA helicase [Rhodococcus jostii RHA1] Length=828 Score = 1071 bits (2770), Expect = 0.0, Method: Compositional matrix adjust. Identities = 556/818 (68%), Positives = 633/818 (78%), Gaps = 62/818 (7%) Query 8 AKPPGPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGV 67 A P + +D LL GLNPQQR+AVVH GSPLLIVAGAGSGKTAVLTRRIAYL+A RGV Sbjct 19 AAAPARAGSDALLQGLNPQQREAVVHAGSPLLIVAGAGSGKTAVLTRRIAYLLAERGVMP 78 Query 68 GQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEGLNSNFSI 127 GQILAITFTNKAAAEMRERV LVG +A MWVSTFHS+CVRILR QAAL+ GLNSNFSI Sbjct 79 GQILAITFTNKAAAEMRERVAHLVGPRANSMWVSTFHSSCVRILRAQAALLPGLNSNFSI 138 Query 128 YDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTEDSDDLARA 187 YDADDSRRLL M+ +DL +D KRYS RLLA ISNLKNEL+DP QA A +D +L R Sbjct 139 YDADDSRRLLTMIAKDLNIDTKRYSARLLATHISNLKNELVDPDQASADADKDPAELPRL 198 Query 188 VASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEYQDTNHAQ 247 +A VY YQ+RLR+ANALDFDDLIGETVA+LQAFPQ+A+YYRRRFRHVLVDEYQDTNHAQ Sbjct 199 IAKVYGHYQQRLRSANALDFDDLIGETVAMLQAFPQVAEYYRRRFRHVLVDEYQDTNHAQ 258 Query 248 YVLVRELV-----GRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTRTI 302 Y+LVRELV G D++ + P ELCVVGDADQSIYAFRGATIRNIE+FERDYPD RTI Sbjct 259 YMLVRELVGGTADGEDADHRVAPAELCVVGDADQSIYAFRGATIRNIEEFERDYPDARTI 318 Query 303 LLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAEEI 362 LLEQNYRSTQNILSAANSVI++N GRREKRLWTD+G GELI GYVADNEHDEA FVA EI Sbjct 319 LLEQNYRSTQNILSAANSVISKNTGRREKRLWTDSGVGELITGYVADNEHDEASFVASEI 378 Query 363 DALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAYLR 422 D L + + + DVAVFYRTNNSSR+LEE+ IR G+PYKVVGGVRFYERKE+RDIVAYLR Sbjct 379 DKLVDSGDAKFGDVAVFYRTNNSSRALEEIFIRLGVPYKVVGGVRFYERKEVRDIVAYLR 438 Query 423 VLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRA 482 VL N D VSLRRILNTPRRGIGDRAEACVAV++E G+ F +AL +G+VP+LNTR+ Sbjct 439 VLANENDTVSLRRILNTPRRGIGDRAEACVAVHSEQRGISFAEALRDGGEGRVPLLNTRS 498 Query 483 EKAIAGFVEMFDELRGRL------DD-------DLGELVEAVLERTGYRRELEASTDPQE 529 +KAIA F+E+ D LR L DD D+G++VEAVLERTGYR EL AS+DPQ+ Sbjct 499 QKAIASFLELMDGLRVLLPPETTADDVVPDQLGDIGDVVEAVLERTGYRAELAASSDPQD 558 Query 530 LARLDNLNELVSVAHEFSTDRENAAAL--GPDDEDV------PDTGVLADFLERVSLVAD 581 ARLDNLNELVSVA EFS+D NAA L P+D DV PD G LA FLERVSLVAD Sbjct 559 GARLDNLNELVSVAREFSSDARNAAGLVEPPEDGDVDARDGEPDPGSLAAFLERVSLVAD 618 Query 582 ADEIPEHGAGVVTLMTLHTAKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVG 641 +D++P++ GVVTLMTLHTAKGLEFPVVFVTGWEDG FPHMRAL +PTELSEERRLAYVG Sbjct 619 SDQLPDNDEGVVTLMTLHTAKGLEFPVVFVTGWEDGQFPHMRALGDPTELSEERRLAYVG 678 Query 642 ITRARQRLYVSRAIVRSSWGQPMLNPESRFLREIPQELIDWRRTAPKPSFSAPVSGAG-- 699 ITRARQRLY++RA++RS+WGQP+ NPESRFL+EIP +L+ WRR P + + G Sbjct 679 ITRARQRLYLTRAVMRSAWGQPIQNPESRFLQEIPSDLVHWRREDPGTGIGSGGAIGGGR 738 Query 700 -------------------------RFGSARPSPTRSGASRRPLLVLQVGDRVTHDKYGL 734 FG+AR +R LVL VGDRV+HDKYGL Sbjct 739 ARGSGYGGQGFGGGSGYGGGSAGTPSFGAAR--------TRNNNLVLTVGDRVSHDKYGL 790 Query 735 GRVEEVSGVGESAMSLIDFGSSGRVKLMH-NHAPVTKL 771 G V E G G +A IDFGS+G+V+LM P+ KL Sbjct 791 GTVLETKGAGPTATVTIDFGSAGKVRLMLIGGVPMVKL 828 >gi|229495094|ref|ZP_04388840.1| ATP-dependent DNA helicase PcrA [Rhodococcus erythropolis SK121] gi|229318025|gb|EEN83900.1| ATP-dependent DNA helicase PcrA [Rhodococcus erythropolis SK121] Length=830 Score = 1065 bits (2755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 551/803 (69%), Positives = 626/803 (78%), Gaps = 47/803 (5%) Query 16 ADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITF 75 +D LL+GLNPQQR+AVVH GSPLLIVAGAGSGKTAVLTRRIAYL+A RGV GQILAITF Sbjct 28 SDALLEGLNPQQREAVVHAGSPLLIVAGAGSGKTAVLTRRIAYLLAERGVTPGQILAITF 87 Query 76 TNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRR 135 TNKAAAEMRERV LVG +A MWVSTFHS+CVRILR QAAL+ GLNSNFSIYD+DDSRR Sbjct 88 TNKAAAEMRERVAALVGPRANAMWVSTFHSSCVRILRAQAALLPGLNSNFSIYDSDDSRR 147 Query 136 LLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTEDSDDLARAVASVYDEY 195 LL M+ +DL LD KR+S RLLA ISNLKNEL+ P +A+ +D +L R +A VY Y Sbjct 148 LLTMISKDLELDTKRFSARLLATHISNLKNELVGPEEAVVAADQDPAELPRLIAKVYGHY 207 Query 196 QRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEYQDTNHAQYVLVRELV 255 Q+RLRAANALDFDDLIGETVA+LQAFPQIA+YYRRRFRHVLVDEYQDTNHAQY+LVRELV Sbjct 208 QQRLRAANALDFDDLIGETVALLQAFPQIAEYYRRRFRHVLVDEYQDTNHAQYMLVRELV 267 Query 256 GR--DSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTRTILLEQNYRSTQN 313 G +S+ + P ELCVVGDADQSIYAFRGATIRNIE+FERDYPD RTILLEQNYRSTQN Sbjct 268 GGAGESDHAVAPAELCVVGDADQSIYAFRGATIRNIEEFERDYPDARTILLEQNYRSTQN 327 Query 314 ILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAEEIDALAEGSEITY 373 ILSAANSVI++N GRREKRLWTD+G GELIVGYVADNEHDEA FVA EID L + E + Sbjct 328 ILSAANSVISKNTGRREKRLWTDSGEGELIVGYVADNEHDEASFVASEIDRLVDQGETKF 387 Query 374 NDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAYLRVLDNPGDAVSL 433 D+AVFYRTNNSSR+LEE+ IR G+PYKVVGGVRFYERKE+RDIVAYLRVL N D VSL Sbjct 388 ADIAVFYRTNNSSRALEEIFIRLGVPYKVVGGVRFYERKEVRDIVAYLRVLANEDDTVSL 447 Query 434 RRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRAEKAIAGFVEMF 493 RRILNTPRRGIGDRAEACVAV++E+ + F AL A+GKV +LNTR++KAIA F+EM Sbjct 448 RRILNTPRRGIGDRAEACVAVHSEHRNISFAAALRDGAEGKVALLNTRSQKAIASFLEMM 507 Query 494 DELRGRLDD------------DLGELVEAVLERTGYRRELEASTDPQELARLDNLNELVS 541 D LR L D+GE+ EAVLERTGYR EL AS+DPQ+ ARLDNLNELVS Sbjct 508 DGLRALLPTAAADEDEPFELGDIGEVAEAVLERTGYRAELAASSDPQDGARLDNLNELVS 567 Query 542 VAHEFSTDRENAAAL-GPDDEDV-------PDTGVLADFLERVSLVADADEIPEHGAGVV 593 VA EFS+D NAA L PDDE+ PD G LA FLERVSLVADAD++P+ GVV Sbjct 568 VAREFSSDARNAAGLIDPDDEETAAMREGEPDPGSLAAFLERVSLVADADQLPDSDDGVV 627 Query 594 TLMTLHTAKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVSR 653 T+MTLHTAKGLEFPVVFVTGWEDG FPHMRAL +P ELSEERRLAYVGITRARQRLY++R Sbjct 628 TMMTLHTAKGLEFPVVFVTGWEDGQFPHMRALGDPAELSEERRLAYVGITRARQRLYLTR 687 Query 654 AIVRSSWGQPMLNPESRFLREIPQELIDWRRTAPKPSFSAPVS----GAGR--------- 700 AI+RS+WGQP+ NP SRF++EIP++LI+WRR P G+G Sbjct 688 AIMRSAWGQPIQNPASRFIQEIPEDLINWRREDPGTGGGFGSGRPGYGSGSRYGSQGGQG 747 Query 701 ----------FGSARPSPTRSGA-SRRPLLVLQVGDRVTHDKYGLGRVEEVSGVGESAMS 749 G A +P+ A R +LVL GDRV+HDKYGLG V E G G +A Sbjct 748 YGGGQNYGGGSGKAASTPSFGAARGRNNVLVLATGDRVSHDKYGLGTVLETKGTGPTATV 807 Query 750 LIDFGSSGRVKLMH-NHAPVTKL 771 IDFGS+G+V+LM P+ KL Sbjct 808 TIDFGSAGKVRLMLIGGVPMVKL 830 >gi|226307919|ref|YP_002767879.1| ATP-dependent DNA helicase UvrD1 [Rhodococcus erythropolis PR4] gi|226187036|dbj|BAH35140.1| ATP-dependent DNA helicase UvrD1 [Rhodococcus erythropolis PR4] Length=830 Score = 1065 bits (2755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 551/803 (69%), Positives = 626/803 (78%), Gaps = 47/803 (5%) Query 16 ADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITF 75 +D LL+GLNPQQR+AVVH GSPLLIVAGAGSGKTAVLTRRIAYL+A RGV GQILAITF Sbjct 28 SDALLEGLNPQQREAVVHAGSPLLIVAGAGSGKTAVLTRRIAYLLAERGVTPGQILAITF 87 Query 76 TNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRR 135 TNKAAAEMRERV LVG +A MWVSTFHS+CVRILR QAAL+ GLNSNFSIYD+DDSRR Sbjct 88 TNKAAAEMRERVAALVGPRANAMWVSTFHSSCVRILRAQAALLPGLNSNFSIYDSDDSRR 147 Query 136 LLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTEDSDDLARAVASVYDEY 195 LL M+ +DL LD KR+S RLLA ISNLKNEL+ P +A+ +D +L R +A VY Y Sbjct 148 LLTMISKDLELDTKRFSARLLATHISNLKNELVGPEEAVVAADQDPAELPRLIAKVYGHY 207 Query 196 QRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEYQDTNHAQYVLVRELV 255 Q+RLRAANALDFDDLIGETVA+LQAFPQIA+YYRRRFRHVLVDEYQDTNHAQY+LVRELV Sbjct 208 QQRLRAANALDFDDLIGETVALLQAFPQIAEYYRRRFRHVLVDEYQDTNHAQYMLVRELV 267 Query 256 GR--DSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTRTILLEQNYRSTQN 313 G +S+ + P ELCVVGDADQSIYAFRGATIRNIE+FERDYPD RTILLEQNYRSTQN Sbjct 268 GGAGESDHAVAPAELCVVGDADQSIYAFRGATIRNIEEFERDYPDARTILLEQNYRSTQN 327 Query 314 ILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAEEIDALAEGSEITY 373 ILSAANSVI++N GRREKRLWTD+G GELIVGYVADNEHDEA FVA EID L + E + Sbjct 328 ILSAANSVISKNTGRREKRLWTDSGEGELIVGYVADNEHDEASFVASEIDRLVDQGETKF 387 Query 374 NDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAYLRVLDNPGDAVSL 433 D+AVFYRTNNSSR+LEE+ IR G+PYKVVGGVRFYERKE+RDIVAYLRVL N D VSL Sbjct 388 ADIAVFYRTNNSSRALEEIFIRLGVPYKVVGGVRFYERKEVRDIVAYLRVLANEDDTVSL 447 Query 434 RRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRAEKAIAGFVEMF 493 RRILNTPRRGIGDRAEACVAV++E+ + F AL A+GKV +LNTR++KAIA F+EM Sbjct 448 RRILNTPRRGIGDRAEACVAVHSEHRNISFAAALRDGAEGKVALLNTRSQKAIASFLEMM 507 Query 494 DELRGRLDD------------DLGELVEAVLERTGYRRELEASTDPQELARLDNLNELVS 541 D LR L D+GE+ EAVLERTGYR EL AS+DPQ+ ARLDNLNELVS Sbjct 508 DGLRALLPTPAADEDEPFELGDIGEVAEAVLERTGYRAELAASSDPQDGARLDNLNELVS 567 Query 542 VAHEFSTDRENAAAL-GPDDEDV-------PDTGVLADFLERVSLVADADEIPEHGAGVV 593 VA EFS+D NAA L PDDE+ PD G LA FLERVSLVADAD++P+ GVV Sbjct 568 VAREFSSDARNAAGLIDPDDEETAAMREGEPDPGSLAAFLERVSLVADADQLPDSDDGVV 627 Query 594 TLMTLHTAKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVSR 653 T+MTLHTAKGLEFPVVFVTGWEDG FPHMRAL +P ELSEERRLAYVGITRARQRLY++R Sbjct 628 TMMTLHTAKGLEFPVVFVTGWEDGQFPHMRALGDPAELSEERRLAYVGITRARQRLYLTR 687 Query 654 AIVRSSWGQPMLNPESRFLREIPQELIDWRRTAPKPSFSAPVS----GAGR--------- 700 AI+RS+WGQP+ NP SRF++EIP++LI+WRR P G+G Sbjct 688 AIMRSAWGQPIQNPASRFIQEIPEDLINWRREDPGTGGGFGSGRPGYGSGSRYGSQGGQG 747 Query 701 ----------FGSARPSPTRSGA-SRRPLLVLQVGDRVTHDKYGLGRVEEVSGVGESAMS 749 G A +P+ A R +LVL GDRV+HDKYGLG V E G G +A Sbjct 748 YGGGQNYGGGSGKAASTPSFGAARGRNNVLVLATGDRVSHDKYGLGTVLETKGTGPTATV 807 Query 750 LIDFGSSGRVKLMH-NHAPVTKL 771 IDFGS+G+V+LM P+ KL Sbjct 808 TIDFGSAGKVRLMLIGGVPMVKL 830 >gi|226365048|ref|YP_002782831.1| ATP-dependent DNA helicase UvrD1 [Rhodococcus opacus B4] gi|226243538|dbj|BAH53886.1| ATP-dependent DNA helicase UvrD1 [Rhodococcus opacus B4] Length=827 Score = 1063 bits (2750), Expect = 0.0, Method: Compositional matrix adjust. Identities = 550/801 (69%), Positives = 625/801 (79%), Gaps = 45/801 (5%) Query 16 ADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITF 75 +D LL GLNP QR+AVVH GSPLLIVAGAGSGKTAVLTRRIAYL+A RGV GQILAITF Sbjct 27 SDALLQGLNPPQREAVVHAGSPLLIVAGAGSGKTAVLTRRIAYLLAERGVMPGQILAITF 86 Query 76 TNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRR 135 TNKAAAEMRERV LVG +A MWVSTFHS+CVRILR QAAL+ GLNSNFSIYDADDSRR Sbjct 87 TNKAAAEMRERVAHLVGPRANSMWVSTFHSSCVRILRAQAALLPGLNSNFSIYDADDSRR 146 Query 136 LLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTEDSDDLARAVASVYDEY 195 LL M+ +DL +D KRYS RLLA ISNLKNEL+DP QA A +D +L R +A VY Y Sbjct 147 LLTMISKDLNIDTKRYSARLLATHISNLKNELVDPEQASADADKDPAELPRLIAKVYGHY 206 Query 196 QRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEYQDTNHAQYVLVRELV 255 Q+RLR+ANALDFDDLIGETVA+LQAFPQ+A+YYRRRFRHVLVDEYQDTNHAQY+LVRELV Sbjct 207 QQRLRSANALDFDDLIGETVAMLQAFPQVAEYYRRRFRHVLVDEYQDTNHAQYMLVRELV 266 Query 256 -----GRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTRTILLEQNYRS 310 G D++ + P ELCVVGDADQSIYAFRGATIRNIE+FERDYPD RTILLEQNYRS Sbjct 267 GSTADGEDADHRVAPAELCVVGDADQSIYAFRGATIRNIEEFERDYPDARTILLEQNYRS 326 Query 311 TQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAEEIDALAEGSE 370 TQNILSAANSVI++N GRREKRLWTD+G GELI GYVADNEHDEA FVA EID L + + Sbjct 327 TQNILSAANSVISKNTGRREKRLWTDSGEGELITGYVADNEHDEASFVASEIDKLVDSGD 386 Query 371 ITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAYLRVLDNPGDA 430 + DVAVFYRTNNSSR+LEE+ IR G+PYKVVGGVRFYERKE+RDIVAYLRVL N D Sbjct 387 AKFGDVAVFYRTNNSSRALEEIFIRLGVPYKVVGGVRFYERKEVRDIVAYLRVLANEDDT 446 Query 431 VSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRAEKAIAGFV 490 VSLRRILNTPRRGIGDRAEACVAV++E G+ F +AL +G+V +LNTR++KAIA F+ Sbjct 447 VSLRRILNTPRRGIGDRAEACVAVHSEQRGISFAEALRDGGEGRVRLLNTRSQKAIASFL 506 Query 491 EMFDELRGRL------DD-------DLGELVEAVLERTGYRRELEASTDPQELARLDNLN 537 E+ D LR + DD D+G++VEAVLERTGYR EL AS+DPQ+ ARLDNLN Sbjct 507 ELMDGLRVLMPPETTADDIVPDQLGDIGDVVEAVLERTGYRAELAASSDPQDGARLDNLN 566 Query 538 ELVSVAHEFSTDRENAAAL--GPDDEDV------PDTGVLADFLERVSLVADADEIPEHG 589 ELVSVA EFS+D NAA L P+D DV PD G LA FLERVSLVAD+D++P++ Sbjct 567 ELVSVAREFSSDARNAAGLVEPPEDGDVDARDGEPDPGSLAAFLERVSLVADSDQLPDND 626 Query 590 AGVVTLMTLHTAKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRL 649 GVVTLMTLHTAKGLEFPVVFVTGWEDG FPHMRAL +PTELSEERRLAYVGITRARQRL Sbjct 627 EGVVTLMTLHTAKGLEFPVVFVTGWEDGQFPHMRALGDPTELSEERRLAYVGITRARQRL 686 Query 650 YVSRAIVRSSWGQPMLNPESRFLREIPQELIDWRRTAPKPSF------------------ 691 Y++RA++RS+WGQP+ NPESRFL+EIP +L+ WRR P P Sbjct 687 YLTRAVMRSAWGQPIQNPESRFLQEIPSDLVHWRREDPGPRLGSGGAIGGGRARGSGYGQ 746 Query 692 SAPVSGAGRFGSARPSPTRSGASRRPLLVLQVGDRVTHDKYGLGRVEEVSGVGESAMSLI 751 GS+ + SR LVL VGDRV+HDKYGLG V E G G +A I Sbjct 747 GFGGGSGYGGGSSSTPSFGAARSRNNNLVLAVGDRVSHDKYGLGTVLETKGAGPTATVTI 806 Query 752 DFGSSGRVKLMH-NHAPVTKL 771 DFGS+G+V+LM P+ KL Sbjct 807 DFGSAGKVRLMLIGGVPMVKL 827 >gi|319947691|ref|ZP_08021905.1| UvrD/Rep family ATP-dependent DNA helicase [Dietzia cinnamea P4] gi|319438641|gb|EFV93547.1| UvrD/Rep family ATP-dependent DNA helicase [Dietzia cinnamea P4] Length=824 Score = 1008 bits (2607), Expect = 0.0, Method: Compositional matrix adjust. Identities = 529/828 (64%), Positives = 607/828 (74%), Gaps = 86/828 (10%) Query 14 SPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAI 73 SP LLDGLNPQQ AV H G PLLIVAGAGSGKT+VLTRRIAYL+A G GQILAI Sbjct 13 SPHSPLLDGLNPQQAAAVTHRGGPLLIVAGAGSGKTSVLTRRIAYLLAEGGAHPGQILAI 72 Query 74 TFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDS 133 TFTNKAAAEMRERV LVG A MWV+TFHS CVRILR Q+AL+ NSNF+IYD+DDS Sbjct 73 TFTNKAAAEMRERVAALVGPHAERMWVATFHSICVRILRAQSALLGTRNSNFTIYDSDDS 132 Query 134 RRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTEDSDDLARAVASVYD 193 RRLL M+ ++ L++K+++PR+LA+AISN KNEL DP +A+ EDSD A+ VA+V+ Sbjct 133 RRLLGMIAKEQQLEVKKFTPRMLASAISNHKNELRDPAEAMDRALEDSDRTAQTVAAVFT 192 Query 194 EYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEYQDTNHAQYVLVRE 253 EYQ RL+AANA DFDDLIGETVA+L+A P++A YYRRRFRHV+VDEYQDTNHAQYVLVR Sbjct 193 EYQARLQAANAFDFDDLIGETVALLRAHPEVAAYYRRRFRHVMVDEYQDTNHAQYVLVRT 252 Query 254 LVGRDSND----GIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTRTILLEQNYR 309 LVG D G+PP ELCVVGDADQSIYAFRGATIRNIEDFE DYPD R+ILLEQNYR Sbjct 253 LVGGAEGDDDEVGVPPAELCVVGDADQSIYAFRGATIRNIEDFEHDYPDARSILLEQNYR 312 Query 310 STQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAEEIDALAEGS 369 STQ ILSAAN+VIARNAGRREK LWT GAGEL+VGYVADNEHDEARF+A EID L + Sbjct 313 STQTILSAANAVIARNAGRREKNLWTAEGAGELLVGYVADNEHDEARFIAGEIDRLVDSG 372 Query 370 EITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAYLRVLDNPGD 429 E +Y+DVAVFYRTNNSSR +E+V +R G+PYKVVGG RFYERKE+RD+VAYL+VL+NP D Sbjct 373 EASYSDVAVFYRTNNSSRVIEDVFVRLGLPYKVVGGTRFYERKEVRDVVAYLKVLNNPDD 432 Query 430 AVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRAEKAIAGF 489 AV++RRILNTPRRGIGDRAEACV V+AE G+GF AL A++GKV +L TR+ KAIAGF Sbjct 433 AVAIRRILNTPRRGIGDRAEACVVVHAEQRGIGFAQALRDASEGKVSLLPTRSVKAIAGF 492 Query 490 VEMFDELRGRLDD-----------DLGELVEAVLERTGYRRELEASTDPQELARLDNLNE 538 VEM D+LRGRLD D+G LVEAVLERTGYR ELEAS DPQ+ ARLDNLNE Sbjct 493 VEMLDDLRGRLDGDDHAGGHDSAPDVGALVEAVLERTGYRAELEASNDPQDAARLDNLNE 552 Query 539 LVSVAHEFSTDR------------ENAAALGPDDEDVPDTGVLADFLERVSLVADADEIP 586 LV V EFS++ E A A DE + + G LA FLERVSLVADADEIP Sbjct 553 LVGVGREFSSEAALQRSAREQGFVEEADADADLDEGLAEPGSLAAFLERVSLVADADEIP 612 Query 587 EHGAGVVTLMTLHTAKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRAR 646 + G VTLMTLHTAKGLEFPVVF+ G EDG+FPHMRAL +P ELSEERRLAYVGITRAR Sbjct 613 DDDQGQVTLMTLHTAKGLEFPVVFLIGMEDGLFPHMRALGDPAELSEERRLAYVGITRAR 672 Query 647 QRLYVSRAIVRSSWGQPMLNPESRFLREIPQELIDWRRTAPKPSFSAPVSGAGRFGS--- 703 +RLY++RA++RSSWGQPM NP SRFL EIP E I+W+R P +G FG Sbjct 673 RRLYLTRAMMRSSWGQPMTNPGSRFLEEIPSEAIEWQREEP--------AGGTGFGDDDS 724 Query 704 ---------------------------------------ARPSPTRSGASRRPLLVLQVG 724 A+PS P L L G Sbjct 725 YAPRRRFGGGSGGYGSGGYSSGGFGSGGGSGGRSPGIPRAKPSA--------PALELAPG 776 Query 725 DRVTHDKYGLGRVEEVSGVGESAMSLIDFGSSGRVKLMH-NHAPVTKL 771 DRVTHDKYGLG+V G G A + IDFG+SG+V+LM P+ KL Sbjct 777 DRVTHDKYGLGKVLSCDGSGTRATATIDFGASGKVRLMLIGGVPMQKL 824 >gi|333921242|ref|YP_004494823.1| ATP-dependent DNA helicase UvrD1 [Amycolicicoccus subflavus DQS3-9A1] gi|333483463|gb|AEF42023.1| ATP-dependent DNA helicase UvrD1 [Amycolicicoccus subflavus DQS3-9A1] Length=817 Score = 1006 bits (2601), Expect = 0.0, Method: Compositional matrix adjust. Identities = 525/789 (67%), Positives = 606/789 (77%), Gaps = 36/789 (4%) Query 16 ADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITF 75 A LLDGLN QR+AV+HEGSPLLIVAGAGSGKTAVLTRRIAYL+A R +ILAITF Sbjct 32 AAALLDGLNRHQREAVLHEGSPLLIVAGAGSGKTAVLTRRIAYLLAERQARPSEILAITF 91 Query 76 TNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRR 135 TNKAAAEMRERV LVG +A MWV+TFHSTCVRILR QA L+EGLNSNFSIYDADDSRR Sbjct 92 TNKAAAEMRERVSQLVGPRAASMWVATFHSTCVRILRAQAGLVEGLNSNFSIYDADDSRR 151 Query 136 LLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTEDSDDLARAVASVYDEY 195 LL M+ +DL +D++RY+PR+LA ISNLKNELI P QA D +++R VA VY Y Sbjct 152 LLAMIAKDLEIDVRRYTPRMLATQISNLKNELIGPAQAARDADTDPAEVSRTVARVYGVY 211 Query 196 QRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEYQDTNHAQYVLVRELV 255 QRRLR ANALDFDDLI ETV +LQ F ++A YY RRFRHVLVDEYQDTNHAQYVLVREL Sbjct 212 QRRLREANALDFDDLISETVRILQDFHEVAAYYHRRFRHVLVDEYQDTNHAQYVLVRELT 271 Query 256 GRDSN--DGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTRTILLEQNYRSTQN 313 G N +G+P ELCVVGDADQSIYAFRGATIRNI +FERD+PD RTILLEQNYRSTQ Sbjct 272 GAGVNETEGVPTAELCVVGDADQSIYAFRGATIRNIVEFERDFPDARTILLEQNYRSTQT 331 Query 314 ILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAEEIDAL-AEGS--- 369 ILSAAN+VI++N+GRR KRLWTD+G GE I GYVADNEHDEA FVA EID L GS Sbjct 332 ILSAANAVISKNSGRRPKRLWTDSGDGESITGYVADNEHDEATFVASEIDRLTGSGSIGS 391 Query 370 ----EITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAYLRVLD 425 +I Y+D+AVFYRTNNSSR+ EEV IR G+PYKVVG VRFYERKE+RDIVAYLRVL Sbjct 392 GVAGDIKYSDIAVFYRTNNSSRAFEEVFIRHGLPYKVVGSVRFYERKEVRDIVAYLRVLA 451 Query 426 NPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRAEKA 485 NP D VSLRRILNTPRRGIGDRAEACVAV+AE + F +AL AA+G VP+L TRA++ Sbjct 452 NPDDTVSLRRILNTPRRGIGDRAEACVAVHAEQREISFAEALRDAAEGTVPLLGTRAQRC 511 Query 486 IAGFVEMFDELRGRL------DDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNEL 539 IA FVE+ D LR L D D+G+L++ +L TGYR+ELEAS DPQ+ +RLDNLNEL Sbjct 512 IASFVELLDTLRQPLTAREPADLDVGKLIDGILSMTGYRKELEASNDPQDGSRLDNLNEL 571 Query 540 VSVAHEFSTDRENAAALGPDD-EDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTL 598 VSV HEFS + A G + E P G L FLERV+LVAD+D++P+ AGVVTLMTL Sbjct 572 VSVGHEFSAEAAQLIADGHEPAEGDPVPGSLEAFLERVALVADSDQVPDSDAGVVTLMTL 631 Query 599 HTAKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVSRAIVRS 658 HTAKGLEFPVVF+TGWEDG FPHMRAL +P ELSEERRLAYVGITRAR+RLY+SRA+ R+ Sbjct 632 HTAKGLEFPVVFLTGWEDGQFPHMRALGDPDELSEERRLAYVGITRARRRLYLSRAVTRA 691 Query 659 SWGQPMLNPESRFLREIPQELIDWRRTAPKPSFSAPVSGAGR-FGSARPSP--------- 708 +WGQP+ NPESRFL+EIP EL++W+RT P PS S G GR GS +P Sbjct 692 AWGQPVSNPESRFLQEIPAELLEWKRTDPGPSRSF---GTGRAIGSRWNAPSGGYDSPFG 748 Query 709 -----TRSGASRRPLLVLQVGDRVTHDKYGLGRVEEVSGVGESAMSLIDFGSSGRVKLMH 763 + +G R LVL+ GDRV+HDKYGLG V G G A + IDFG++G+V L+ Sbjct 749 NGNRGSSTGRGRGAPLVLKAGDRVSHDKYGLGTVVATEGSGNLARATIDFGATGKVSLLL 808 Query 764 -NHAPVTKL 771 P+ KL Sbjct 809 IGGVPMVKL 817 >gi|296141008|ref|YP_003648251.1| ATP-dependent DNA helicase PcrA [Tsukamurella paurometabola DSM 20162] gi|296029142|gb|ADG79912.1| ATP-dependent DNA helicase PcrA [Tsukamurella paurometabola DSM 20162] Length=802 Score = 1001 bits (2588), Expect = 0.0, Method: Compositional matrix adjust. Identities = 515/783 (66%), Positives = 598/783 (77%), Gaps = 38/783 (4%) Query 18 QLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITFTN 77 +LL+GLNPQQ+ AV+HEGSPLLIVAGAGSGKTAVLTRRIAYL+ ARG+ GQILAITFTN Sbjct 29 ELLEGLNPQQKAAVLHEGSPLLIVAGAGSGKTAVLTRRIAYLLRARGMHPGQILAITFTN 88 Query 78 KAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRRLL 137 KAAAEMRERV L+G +A MWVSTFHSTCVRILR QA L+ G+NSNFSIYDADDSRRLL Sbjct 89 KAAAEMRERVAQLIGPRANTMWVSTFHSTCVRILRAQAGLLPGMNSNFSIYDADDSRRLL 148 Query 138 QMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTEDSDDLARAVASVYDEYQR 197 M+ +++GLD K+++PR LA ISNLKNELI P A A + + A VA V+ YQ Sbjct 149 TMIVKEMGLDAKKFAPRALATQISNLKNELIGPEDAAADAAKTGEPFAVTVAEVFGTYQA 208 Query 198 RLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEYQDTNHAQYVLVRELVG- 256 RLR+ANA DFDDLIGETV +LQ+ P +AQYYRRRFRHVLVDEYQDTNHAQY+LVRELVG Sbjct 209 RLRSANAFDFDDLIGETVGLLQSHPNVAQYYRRRFRHVLVDEYQDTNHAQYILVRELVGL 268 Query 257 RDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTRTILLEQNYRSTQNILS 316 + DG+ P ELCVVGDADQSIYAFRGATIRNIE+FERD+P+ TILLEQNYRSTQ ILS Sbjct 269 EEDEDGVTPSELCVVGDADQSIYAFRGATIRNIEEFERDFPNAETILLEQNYRSTQTILS 328 Query 317 AANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAEEIDALAEGSEITYNDV 376 AAN+VI+RNAGRREK+LWTD G G LI GYVADNEHDEA FV EIDAL++ I Y+DV Sbjct 329 AANAVISRNAGRREKKLWTDQGDGALITGYVADNEHDEASFVVSEIDALSDNG-IKYSDV 387 Query 377 AVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAYLRVLDNPGDAVSLRRI 436 AVFYRTN ++R LEEV IR G+PYKVVGGVRFYERKE+RD+VAYLR +DNP D VSL+RI Sbjct 388 AVFYRTNTAARVLEEVFIRHGVPYKVVGGVRFYERKEVRDLVAYLRAIDNPNDTVSLQRI 447 Query 437 LNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRAEKAIAGFVEMFDEL 496 +NTPRRGIGDRA+AC+ V+AEN G FG A+ A +G V MLN R+ AIA F + EL Sbjct 448 VNTPRRGIGDRAQACLTVHAENHGTNFGGAIADAVEGGVAMLNPRSRNAIATFSGLMTEL 507 Query 497 RGRLDD---DLGELVEAVLERTGYRRELEASTDPQELARLDNLNELVSVAHEFST-DREN 552 R DD D+G+L++AV+E+TGYR ELE S+DPQ+ ARLDN+ EL+SVA EFS D + Sbjct 508 RRIADDDESDIGDLLDAVVEKTGYRAELEGSSDPQDGARLDNIEELISVAREFSAQDFTD 567 Query 553 AAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHTAKGLEFPVVFVT 612 A DE P+ G LA FLERVSLVADAD++P+ AGVVTLMTLHTAKGLEFPVVFVT Sbjct 568 VVA----DEGAPEPGSLAAFLERVSLVADADQVPDDDAGVVTLMTLHTAKGLEFPVVFVT 623 Query 613 GWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVSRAIVRSSWGQPMLNPESRFL 672 GWEDG FPHMRAL + EL+EERRLAYVGITRAR+RLYVSRA++RS+WG PM NPESRFL Sbjct 624 GWEDGQFPHMRALGDENELAEERRLAYVGITRARERLYVSRAMIRSTWGDPMQNPESRFL 683 Query 673 REIPQELIDWRRTAPKPS---FSAPVSGAGR--------FGSAR------------PSPT 709 EIPQ LIDWRR P+ + S + G R +G R P PT Sbjct 684 AEIPQHLIDWRRLEPQRTQFGGSRGIFGGDRESWGGQRTWGEKRGGSDAAWKSKKSPKPT 743 Query 710 RSGASRRPLLVLQVGDRVTHDKYGLGRVEEVSGVGESAMSLIDFGSSGRVKLM-HNHAPV 768 R R L L +GDRV+HD +GLG V + G G DFG++G V LM P+ Sbjct 744 R----RANKLSLVIGDRVSHDSFGLGTVTAIQGAGPLERVTFDFGTAGTVTLMTFGGLPM 799 Query 769 TKL 771 KL Sbjct 800 EKL 802 >gi|262201311|ref|YP_003272519.1| ATP-dependent DNA helicase PcrA [Gordonia bronchialis DSM 43247] gi|262084658|gb|ACY20626.1| ATP-dependent DNA helicase PcrA [Gordonia bronchialis DSM 43247] Length=828 Score = 995 bits (2573), Expect = 0.0, Method: Compositional matrix adjust. Identities = 519/807 (65%), Positives = 609/807 (76%), Gaps = 58/807 (7%) Query 10 PPGPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQ 69 PP +LLDGLNPQQR AV+H G+PLLIVAGAGSGKTAVLTRRIAYL+AAR V GQ Sbjct 16 PPTDPAITRLLDGLNPQQRAAVLHTGAPLLIVAGAGSGKTAVLTRRIAYLLAARDVSPGQ 75 Query 70 ILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYD 129 +LAITFTNKAAAEMRERV+ LVG +A YMWVSTFHSTCVRILR Q+ L+ G+NSNFSIYD Sbjct 76 VLAITFTNKAAAEMRERVIDLVGPRATYMWVSTFHSTCVRILRAQSGLLAGMNSNFSIYD 135 Query 130 ADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTEDSDDLARAVA 189 ADDS+RLL M+ RDL LD K++SPR + AISN KNEL+ P QA+ D + A+ +A Sbjct 136 ADDSKRLLGMIIRDLELDPKKFSPRGVGVAISNFKNELVGPEQAVEAAASD-EPAAQQIA 194 Query 190 SVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEYQDTNHAQYV 249 +Y EYQRRLRAANA DFDDLIGETVA+L A P++A+YYRRRFRHVLVDEYQDTNHAQYV Sbjct 195 RIYAEYQRRLRAANAFDFDDLIGETVALLHAHPEVAEYYRRRFRHVLVDEYQDTNHAQYV 254 Query 250 LVRELVGR-DSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTRTILLEQNY 308 L+RELVG + G+ P ELCVVGDADQSIYAFRGATIRNIE+FERD+P+ TILLEQNY Sbjct 255 LIRELVGEVPTAGGLEPSELCVVGDADQSIYAFRGATIRNIEEFERDFPNAETILLEQNY 314 Query 309 RSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAEEIDALAE- 367 RSTQ ILSAAN+VIARN RR+KRLWTD+G GELIVGYVAD++ DE+ F+A+EI++L + Sbjct 315 RSTQTILSAANAVIARNENRRDKRLWTDSGDGELIVGYVADSDRDESTFIAKEIESLTDY 374 Query 368 ----GSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAYLRV 423 S Y+D+AVFYRTN SR+LEEV +R GIPYKVVGG +FYERKE+RD+VAYLRV Sbjct 375 SIGGSSSHKYSDIAVFYRTNTGSRALEEVFVRHGIPYKVVGGTKFYERKEVRDVVAYLRV 434 Query 424 LDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRAE 483 + NP DAVSLRRILNTPRRGIGDRAEACVAV++ENTG F ++L+ AA GKV MLNTRA Sbjct 435 VANPDDAVSLRRILNTPRRGIGDRAEACVAVHSENTGRSFYESLIDAAAGKVAMLNTRAI 494 Query 484 KAIAGFVEMFDELR----------GRLDD------------DLGELVEAVLERTGYRREL 521 K I GFV++ + LR G D+ D+GELV+A++ERTGYR EL Sbjct 495 KQIGGFVDLIEGLRTDFLTAFGAAGESDEDVAFIDATEEGADIGELVDAIVERTGYRGEL 554 Query 522 EASTDPQELARLDNLNELVSVAHEFSTDRENAAAL-----------GPDDEDVPDTGVLA 570 EAS DPQ+ ARLDNLNEL+SVA EFS D A G D E PD G LA Sbjct 555 EASNDPQDGARLDNLNELISVAQEFSRDAAELAEDEAADDDDPLESGRDTEGEPDPGSLA 614 Query 571 DFLERVSLVADADEIPEHGAGVVTLMTLHTAKGLEFPVVFVTGWEDGMFPHMRALDNPTE 630 FLERVSLVADAD++P+ G GVVT+MTLHTAKGLEFPVVFVTGWEDG FPHMRA+ +P E Sbjct 615 AFLERVSLVADADQLPDEGEGVVTMMTLHTAKGLEFPVVFVTGWEDGHFPHMRAMGDPAE 674 Query 631 LSEERRLAYVGITRARQRLYVSRAIVRSSWGQPMLNPESRFLREIPQELIDWRRTAPKPS 690 LSEERRLAYVGITRA++RLY++R+I R+SWGQP+ NPESRFL+EIPQ L+DWRRT P+ + Sbjct 675 LSEERRLAYVGITRAKERLYLTRSITRASWGQPVSNPESRFLQEIPQHLLDWRRTEPRRT 734 Query 691 FS--------------APVSGAGRFGSARPSPTRSGASRRPLLVLQVGDRVTHDKYGLGR 736 S A SG S P+R R + +VGDR H KYGLG+ Sbjct 735 QSRFGGSSGGIFGRDGATSSGLRGRSSYSSDPSR---GRNTFVNYEVGDRHNHPKYGLGK 791 Query 737 VEEVSGVGESAMSLIDF-GSSGRVKLM 762 V G G + ID+ G +GRV L+ Sbjct 792 VVAKEGSGATERITIDYGGGTGRVTLL 818 >gi|343927253|ref|ZP_08766731.1| ATP-dependent DNA helicase UvrD1 [Gordonia alkanivorans NBRC 16433] gi|343762870|dbj|GAA13657.1| ATP-dependent DNA helicase UvrD1 [Gordonia alkanivorans NBRC 16433] Length=836 Score = 989 bits (2556), Expect = 0.0, Method: Compositional matrix adjust. Identities = 511/801 (64%), Positives = 602/801 (76%), Gaps = 60/801 (7%) Query 18 QLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITFTN 77 +LL+GLNPQQR AV+H G+PLLIVAGAGSGKT+VLTRRIAYL+AAR V GQILAITFTN Sbjct 30 RLLEGLNPQQRAAVLHAGAPLLIVAGAGSGKTSVLTRRIAYLLAARDVTPGQILAITFTN 89 Query 78 KAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRRLL 137 KAAAEMRERV+ LVG +A YMWVSTFHSTCVRILR Q+ L+EG+NSNFSIYDADDS+RLL Sbjct 90 KAAAEMRERVIDLVGPRAAYMWVSTFHSTCVRILRAQSGLLEGMNSNFSIYDADDSKRLL 149 Query 138 QMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTEDSDDLARAVASVYDEYQR 197 M+ RDL LD K++SPR ++ AISN KNELI P A A + ED D A +A ++ EYQR Sbjct 150 GMIIRDLDLDPKKFSPRGVSVAISNFKNELISPDAAAASVNED-DFTAATIAKIFAEYQR 208 Query 198 RLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEYQDTNHAQYVLVRELVGR 257 RLRAANA DFDDLIGETVA+L PQ+A+YYRRRFRHVLVDEYQDTNHAQYVL+RELVG Sbjct 209 RLRAANAFDFDDLIGETVALLHRHPQVAEYYRRRFRHVLVDEYQDTNHAQYVLIRELVGE 268 Query 258 DSN-DGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTRTILLEQNYRSTQNILS 316 + G+ P ELCVVGDADQSIYAFRGATIRNIE+FERD+ + T+LLEQNYRSTQ ILS Sbjct 269 QTTASGLEPSELCVVGDADQSIYAFRGATIRNIEEFERDFTNAETVLLEQNYRSTQTILS 328 Query 317 AANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAEEIDALAE-----GSEI 371 AAN+VIARN GRREK+LWTD+G GELIVGYVAD++ +E+ F+A+EI+ L + S Sbjct 329 AANAVIARNTGRREKKLWTDSGDGELIVGYVADSDREESTFIAKEIEELTDYSIGGSSSY 388 Query 372 TYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAYLRVLDNPGDAV 431 Y+D+AVFYRTN SR++EEV +R GIPYKVVGG +FYERKE+RD+VAYLRV+ NP D+V Sbjct 389 KYSDIAVFYRTNTGSRAIEEVFVRHGIPYKVVGGTKFYERKEVRDVVAYLRVVANPDDSV 448 Query 432 SLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRAEKAIAGFVE 491 SLRRILNTPRRGIGDRAEACVAV++ENTG F ++LV AA+GKV +LNTRA K I GFVE Sbjct 449 SLRRILNTPRRGIGDRAEACVAVHSENTGRSFYESLVDAAEGKVALLNTRAVKQIGGFVE 508 Query 492 MFDELRGRL---------DD-------------DLGELVEAVLERTGYRRELEASTDPQE 529 + + LR DD D+GELV+A++ERTGYR ELEAS DPQ+ Sbjct 509 LIEGLRADFLTHFGESDTDDADTAFLDATEESADIGELVDAIVERTGYRSELEASNDPQD 568 Query 530 LARLDNLNELVSVAHEFSTDRENAAALGPDDEDV-------PDTGVLADFLERVSLVADA 582 ARLDN+NELV+VA EFS D DD + P+ G LA FLERVSLVADA Sbjct 569 GARLDNINELVAVAREFSADAAQVDLEADDDPSIEVDREGEPEPGSLAAFLERVSLVADA 628 Query 583 DEIPEHGAGVVTLMTLHTAKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGI 642 D++P+ G GVVT+MTLHTAKGLEFPVVFVTGWEDG FPHMRAL +P ELSEERRLAYVGI Sbjct 629 DQVPDEGDGVVTMMTLHTAKGLEFPVVFVTGWEDGHFPHMRALGDPNELSEERRLAYVGI 688 Query 643 TRARQRLYVSRAIVRSSWGQPMLNPESRFLREIPQELIDWRRTAPKPSFSAPVSGAGRFG 702 TRA+QRLY++R++ R+SWGQP+ NPESRFL EIPQ LIDWRRT P+ S +G Sbjct 689 TRAKQRLYLTRSVTRASWGQPVSNPESRFLPEIPQHLIDWRRTEPRRSVRGFGGSSGGVF 748 Query 703 SA--------------------RPSPTRSGASRRPLLVLQVGDRVTHDKYGLGRVEEVSG 742 P R R + L +GDR H KYG+G+V G Sbjct 749 GRDDSFSGSGGGSSFGRGRSSYSSDPAR---GRNKQVHLDIGDRHNHPKYGMGKVVAKEG 805 Query 743 VGESAMSLIDF-GSSGRVKLM 762 G + ID+ GS+GRV L+ Sbjct 806 SGATERVTIDYGGSAGRVTLL 826 >gi|337290308|ref|YP_004629329.1| ATP-dependent DNA helicase II [Corynebacterium ulcerans BR-AD22] gi|334698614|gb|AEG83410.1| ATP-dependent DNA helicase II [Corynebacterium ulcerans BR-AD22] Length=855 Score = 974 bits (2518), Expect = 0.0, Method: Compositional matrix adjust. Identities = 500/797 (63%), Positives = 599/797 (76%), Gaps = 44/797 (5%) Query 13 PSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILA 72 P AD L+ GLNPQQ+QAV H GSPLLIVAGAGSGKTAVLTRRIAYLM RGV GQILA Sbjct 65 PVMADDLVQGLNPQQQQAVEHSGSPLLIVAGAGSGKTAVLTRRIAYLMRIRGVQPGQILA 124 Query 73 ITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADD 132 ITFTNKAAAEMRERV LVG A MWVSTFHSTCVRILR QA L+ GLN+NF+IYD+DD Sbjct 125 ITFTNKAAAEMRERVAHLVGPIANRMWVSTFHSTCVRILREQAQLVAGLNTNFTIYDSDD 184 Query 133 SRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTEDSDDLARAVASVY 192 S+RLL M+ +D+ LDIK+++PRLL ISNLKNELI P A++ + VA+VY Sbjct 185 SKRLLAMISKDMNLDIKKFTPRLLGAGISNLKNELISPETAVSEAESTKNPYETTVAAVY 244 Query 193 DEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEYQDTNHAQYVLVR 252 EYQRRLR ANA+DFDDLIGETV + Q PQ+ +YYRRRFRHVL+DEYQDTNHAQYVL+ Sbjct 245 VEYQRRLRQANAVDFDDLIGETVRIFQEHPQVTEYYRRRFRHVLIDEYQDTNHAQYVLIH 304 Query 253 ELVGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTRTILLEQNYRSTQ 312 ELVG+ G ELCVVGD+DQSIYAFRGATIRNIE+FERDYPD T+LLEQNYRSTQ Sbjct 305 ELVGK----GPTASELCVVGDSDQSIYAFRGATIRNIEEFERDYPDATTVLLEQNYRSTQ 360 Query 313 NILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAEEIDALAEGSEIT 372 IL+AANSVI++N RR+K+LWT G+GE I GYVADNEHDEARF+A+EIDALA+ + Sbjct 361 TILNAANSVISQNENRRKKKLWTALGSGEPIAGYVADNEHDEARFIAQEIDALADKG-VD 419 Query 373 YNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAYLRVLDNPGDAVS 432 Y+D+A+ YRTNNSSR++E+V +R+GIPYKVVGG RFYERKEIRD++AYLR+LDNP D VS Sbjct 420 YSDIAIMYRTNNSSRAVEDVFMRSGIPYKVVGGTRFYERKEIRDVIAYLRLLDNPEDTVS 479 Query 433 LRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRAEKAIAGFVEM 492 LRRI+NTPRRGIGD+A A + +++EN GV F AL+ AA G++ +L R AI+GFV+M Sbjct 480 LRRIINTPRRGIGDKAVAFLTLHSENQGVSFQQALIDAAAGQISLLGARGRNAISGFVDM 539 Query 493 FDELRGRLDD---------DLGELVEAVLERTGYRRELEASTDPQELARLDNLNELVSVA 543 LR + D+G+++ +L+ TGY+ ELE S DPQ+ ARLDNLNELVSVA Sbjct 540 MAGLRSSAAESVNEITGMPDIGDVISQILDITGYKAELEKSNDPQDGARLDNLNELVSVA 599 Query 544 HEFSTDRENAAALGPDD----EDV-----PDTGVLADFLERVSLVADADEIPEHGAGVVT 594 EFS++ N A D ED+ P+ G L FLERVSLVADAD+IP++ G+VT Sbjct 600 REFSSEAANQVAYAKMDGGELEDLGGQGEPEPGSLQAFLERVSLVADADQIPDNEQGLVT 659 Query 595 LMTLHTAKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVSRA 654 LMTLHTAKGLEFPVVF+ GWEDG FPH+RAL +P EL+EERRLAYVGITRAR+ LY++RA Sbjct 660 LMTLHTAKGLEFPVVFLMGWEDGQFPHLRALGDPKELAEERRLAYVGITRARKTLYITRA 719 Query 655 IVRSSWGQPMLNPESRFLREIPQELIDWRRTAPKPSFSA---PVSGAGR-FGSAR----P 706 ++RSSWG P+ NP SRFL EIP++L+DWRR P+ SF + P G FGS+R Sbjct 720 MLRSSWGNPVTNPASRFLTEIPEDLLDWRREEPENSFDSWGQPSWGRNTGFGSSRGDSWG 779 Query 707 SPTRSGASRRPL-----------LVLQVGDRVTHDKYGLGRVEEVSGVGESAMSLIDFGS 755 SP R GA+ +P L L VGDRV HDKYGLG V +V + IDFGS Sbjct 780 SP-RYGATPKPKKTMPSYTKNSDLSLVVGDRVNHDKYGLGTVTKVDKGSPADSVTIDFGS 838 Query 756 SGRVKLMH-NHAPVTKL 771 SG V+LM P+ KL Sbjct 839 SGTVRLMLIGSVPMEKL 855 >gi|227832630|ref|YP_002834337.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum ATCC 700975] gi|227453646|gb|ACP32399.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum ATCC 700975] Length=852 Score = 974 bits (2518), Expect = 0.0, Method: Compositional matrix adjust. Identities = 506/811 (63%), Positives = 599/811 (74%), Gaps = 57/811 (7%) Query 3 VHATDAKPPGPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLMAA 62 V +A P +D LL+GLNPQQ +AV H GSPLLIVAGAGSGKTAVLTRRIAYLM Sbjct 38 VPGPNADTPSGQASDPLLEGLNPQQEEAVTHSGSPLLIVAGAGSGKTAVLTRRIAYLMRE 97 Query 63 RGVGVGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEGLN 122 RGV QILAITFTNKAAAEM+ERV LVG A MWVSTFHS CVRILRN A L+ GLN Sbjct 98 RGVAPWQILAITFTNKAAAEMKERVGQLVGPVAERMWVSTFHSICVRILRNNAQLVPGLN 157 Query 123 SNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTEDSD 182 +NF+IYD DD+RRLL M+ +D+ LD+K+YS R+LAN ISN KNELI P QA A + Sbjct 158 TNFTIYDGDDARRLLTMIAKDMQLDLKKYSARVLANQISNRKNELISPEQARAEAERTKN 217 Query 183 DLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEYQD 242 VASVY+EYQRRLRAAN++DFDDLIGE V + PQ+ ++YRRRF+HVL+DEYQD Sbjct 218 PFEITVASVYEEYQRRLRAANSVDFDDLIGEVVRIFNQHPQVVEFYRRRFKHVLIDEYQD 277 Query 243 TNHAQYVLVRELVGRDSNDGIPPG--ELCVVGDADQSIYAFRGATIRNIEDFERDYPDTR 300 TNHAQY LV LVGR +PP ELCVVGD+DQSIYAFRGATIRNI++FERDYP Sbjct 278 TNHAQYALVSALVGRGE---LPPDAPELCVVGDSDQSIYAFRGATIRNIQEFERDYPQAH 334 Query 301 TILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAE 360 TILLEQNYRSTQ IL+AAN+VIA+N GRREK LWT G GE IVGYVADNEHDEAR++A Sbjct 335 TILLEQNYRSTQTILNAANAVIAKNEGRREKNLWTAHGQGEQIVGYVADNEHDEARYIAS 394 Query 361 EIDALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAY 420 EID+LA+ Y+D+AV YRTNN+SR+LE++ +R+GIPYKVVGG RFYER+EIRD+VAY Sbjct 395 EIDSLADKG-TAYSDIAVMYRTNNASRALEDIFVRSGIPYKVVGGTRFYERREIRDLVAY 453 Query 421 LRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNT 480 LR++DNP D VSLRRI+N P+R IGD+A+A +A++AEN GV FG AL AA GKV L T Sbjct 454 LRIMDNPDDTVSLRRIINVPKRAIGDKAQAQIALHAENLGVSFGAALRDAAAGKVAGLGT 513 Query 481 RAEKAIAGFVEMFDELRGRL---------DDDLGELVEAVLERTGYRRELEASTDPQELA 531 RA A++ F EM + +R ++ DLGEL+ A+L+ TGYR ELE S DPQ+ A Sbjct 514 RAVNAVSKFNEMMEGVRAQIPGMVNEVTGQPDLGELLNALLDATGYRAELENSNDPQDGA 573 Query 532 RLDNLNELVSVAHEFSTDRENAAA-LGPDDEDVPD-------TGVLADFLERVSLVADAD 583 RLDNLNELVSVA EFS++ N A LG D E+ P+ G L FLE+VSLVADAD Sbjct 574 RLDNLNELVSVAREFSSEAANEMAFLGADAEEAPELSEGEAAPGSLQAFLEKVSLVADAD 633 Query 584 EIPEHGAGVVTLMTLHTAKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGIT 643 +IP+H +GVVTLMTLHTAKGLEFPVVF+TGWEDG FPHMR+L +P ELSEERRLAYVGIT Sbjct 634 QIPDHESGVVTLMTLHTAKGLEFPVVFLTGWEDGQFPHMRSLGDPKELSEERRLAYVGIT 693 Query 644 RARQRLYVSRAIVRSSWGQPMLNPESRFLREIPQELIDWRRTAPKPSFSAPVSG-----A 698 RAR++LY++RAI+RSSWG P+ NP SRFL E+P++LIDWRR P S S+ G Sbjct 694 RAREQLYLTRAILRSSWGNPVTNPASRFLAEVPEDLIDWRREEPDSSLSSAWGGDDSYQY 753 Query 699 GR-FGS----------------ARPSPTRSGASRRPL----------LVLQVGDRVTHDK 731 GR FGS A SP++ SR+P L L VGDRV H K Sbjct 754 GRTFGSDSGFFGSRGGGYGSRGAASSPSQR--SRKPAPATSMPKNNHLNLVVGDRVNHAK 811 Query 732 YGLGRVEEVSGVGESAMSLIDFGSSGRVKLM 762 YGLG V E SG G A +DFGS+G+V+LM Sbjct 812 YGLGTVIEASGTGARATVTVDFGSAGKVRLM 842 >gi|302205782|gb|ADL10124.1| ATP-dependent DNA helicase pcrA [Corynebacterium pseudotuberculosis C231] gi|308276017|gb|ADO25916.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis I19] gi|341824455|gb|AEK91976.1| ATP-dependent DNA helicase pcrA [Corynebacterium pseudotuberculosis PAT10] Length=846 Score = 974 bits (2517), Expect = 0.0, Method: Compositional matrix adjust. Identities = 496/795 (63%), Positives = 594/795 (75%), Gaps = 42/795 (5%) Query 5 ATDAKPPGPS-PADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLMAAR 63 A D +P S PAD L+ GLNPQQ+QAV H GSPLLIVAGAGSGKTAVLTRRIAYLM R Sbjct 47 AKDQQPASTSAPADDLVQGLNPQQQQAVEHSGSPLLIVAGAGSGKTAVLTRRIAYLMRIR 106 Query 64 GVGVGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEGLNS 123 GV GQILAITFTNKAAAEMRERV LVG A MWVSTFHSTCVRILR QA L+ GLNS Sbjct 107 GVQPGQILAITFTNKAAAEMRERVAHLVGPIASRMWVSTFHSTCVRILREQAQLVAGLNS 166 Query 124 NFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTEDSDD 183 NF+IYD+DDS+RLL M+ +D+ LDIK+++PRLL ISNLKNELI P A+A + Sbjct 167 NFTIYDSDDSKRLLAMISKDMNLDIKKFTPRLLGAGISNLKNELISPATAVAEAESTKNP 226 Query 184 LARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEYQDT 243 VA+VY EYQRRLR ANA+DFDDLIGETV + + PQ+ +YYRRRFRHVL+DEYQDT Sbjct 227 YETTVAAVYVEYQRRLRQANAVDFDDLIGETVRIFKEHPQVTEYYRRRFRHVLIDEYQDT 286 Query 244 NHAQYVLVRELVGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTRTIL 303 NHAQYVL+ ELVG G ELCVVGD+DQSIYAFRGATIRNIE+FERDYP+ T+L Sbjct 287 NHAQYVLIHELVGT----GETASELCVVGDSDQSIYAFRGATIRNIEEFERDYPNATTVL 342 Query 304 LEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAEEID 363 LEQNYRSTQ IL+AANSVI++N RR+K+LWT G+G+ I GYVADNEHDEARF+A+EID Sbjct 343 LEQNYRSTQTILNAANSVISQNENRRKKKLWTALGSGDPITGYVADNEHDEARFIAQEID 402 Query 364 ALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAYLRV 423 ALA+ I Y+D+A+ YRTNNSSR++E+V +R+GIPYKVVGG RFYERKEIRD++AYLR+ Sbjct 403 ALADKG-IDYSDMAIMYRTNNSSRAVEDVFMRSGIPYKVVGGTRFYERKEIRDVIAYLRL 461 Query 424 LDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRAE 483 LDNP D VSLRRI+NTPRRGIGD+A A + +++EN GV AL+ A++G+V +L R Sbjct 462 LDNPEDTVSLRRIINTPRRGIGDKAVAFLTLHSENQGVSLQQALIDASEGQVSLLGARGR 521 Query 484 KAIAGFVEMFDELRGRLDD---------DLGELVEAVLERTGYRRELEASTDPQELARLD 534 AI+GFV M LR + D+G ++ +L+ TGY+ ELE S DPQ+ ARLD Sbjct 522 NAISGFVNMMSGLRDSAAESVNEITGMPDIGNVIAQILDITGYKAELEKSNDPQDGARLD 581 Query 535 NLNELVSVAHEFSTDRENAAAL----GPDDEDV-----PDTGVLADFLERVSLVADADEI 585 NLNELVSVA EFS++ N A G + +D+ P+ G L FLERVSLVADAD+I Sbjct 582 NLNELVSVAREFSSEAANQVAYAKMDGSELDDLAAVGEPEPGSLQAFLERVSLVADADQI 641 Query 586 PEHGAGVVTLMTLHTAKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRA 645 P++ G+VTLMTLHTAKGLEFPVVF+ GWEDG FPH+RAL +P EL+EERRLAYVGITRA Sbjct 642 PDNEQGLVTLMTLHTAKGLEFPVVFLMGWEDGQFPHLRALGDPKELAEERRLAYVGITRA 701 Query 646 RQRLYVSRAIVRSSWGQPMLNPESRFLREIPQELIDWRRTAPKPSFSA------------ 693 R+ LY++RA++RSSWG P+ NP SRFL EIPQEL+DWRR P+ SF A Sbjct 702 RKALYITRAMLRSSWGNPVTNPASRFLTEIPQELLDWRREEPESSFDAWGQPSWGRNTGF 761 Query 694 -----PVSGAGRFG-SARPSPTRSGASRRPLLVLQVGDRVTHDKYGLGRVEEVSGVGESA 747 G+ R+G S +P T ++ L L VGDRV HDKYGLG V +V + Sbjct 762 SSARGDSWGSPRYGASPKPKKTMPSYAKNSDLSLVVGDRVNHDKYGLGTVTKVDKGSPAD 821 Query 748 MSLIDFGSSGRVKLM 762 IDFGSSG V+LM Sbjct 822 SVTIDFGSSGTVRLM 836 >gi|262182885|ref|ZP_06042306.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum ATCC 700975] Length=841 Score = 974 bits (2517), Expect = 0.0, Method: Compositional matrix adjust. Identities = 506/811 (63%), Positives = 599/811 (74%), Gaps = 57/811 (7%) Query 3 VHATDAKPPGPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLMAA 62 V +A P +D LL+GLNPQQ +AV H GSPLLIVAGAGSGKTAVLTRRIAYLM Sbjct 27 VPGPNADTPSGQASDPLLEGLNPQQEEAVTHSGSPLLIVAGAGSGKTAVLTRRIAYLMRE 86 Query 63 RGVGVGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEGLN 122 RGV QILAITFTNKAAAEM+ERV LVG A MWVSTFHS CVRILRN A L+ GLN Sbjct 87 RGVAPWQILAITFTNKAAAEMKERVGQLVGPVAERMWVSTFHSICVRILRNNAQLVPGLN 146 Query 123 SNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTEDSD 182 +NF+IYD DD+RRLL M+ +D+ LD+K+YS R+LAN ISN KNELI P QA A + Sbjct 147 TNFTIYDGDDARRLLTMIAKDMQLDLKKYSARVLANQISNRKNELISPEQARAEAERTKN 206 Query 183 DLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEYQD 242 VASVY+EYQRRLRAAN++DFDDLIGE V + PQ+ ++YRRRF+HVL+DEYQD Sbjct 207 PFEITVASVYEEYQRRLRAANSVDFDDLIGEVVRIFNQHPQVVEFYRRRFKHVLIDEYQD 266 Query 243 TNHAQYVLVRELVGRDSNDGIPPG--ELCVVGDADQSIYAFRGATIRNIEDFERDYPDTR 300 TNHAQY LV LVGR +PP ELCVVGD+DQSIYAFRGATIRNI++FERDYP Sbjct 267 TNHAQYALVSALVGRGE---LPPDAPELCVVGDSDQSIYAFRGATIRNIQEFERDYPQAH 323 Query 301 TILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAE 360 TILLEQNYRSTQ IL+AAN+VIA+N GRREK LWT G GE IVGYVADNEHDEAR++A Sbjct 324 TILLEQNYRSTQTILNAANAVIAKNEGRREKNLWTAHGQGEQIVGYVADNEHDEARYIAS 383 Query 361 EIDALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAY 420 EID+LA+ Y+D+AV YRTNN+SR+LE++ +R+GIPYKVVGG RFYER+EIRD+VAY Sbjct 384 EIDSLADKG-TAYSDIAVMYRTNNASRALEDIFVRSGIPYKVVGGTRFYERREIRDLVAY 442 Query 421 LRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNT 480 LR++DNP D VSLRRI+N P+R IGD+A+A +A++AEN GV FG AL AA GKV L T Sbjct 443 LRIMDNPDDTVSLRRIINVPKRAIGDKAQAQIALHAENLGVSFGAALRDAAAGKVAGLGT 502 Query 481 RAEKAIAGFVEMFDELRGRL---------DDDLGELVEAVLERTGYRRELEASTDPQELA 531 RA A++ F EM + +R ++ DLGEL+ A+L+ TGYR ELE S DPQ+ A Sbjct 503 RAVNAVSKFNEMMEGVRAQIPGMVNEVTGQPDLGELLNALLDATGYRAELENSNDPQDGA 562 Query 532 RLDNLNELVSVAHEFSTDRENAAA-LGPDDEDVPD-------TGVLADFLERVSLVADAD 583 RLDNLNELVSVA EFS++ N A LG D E+ P+ G L FLE+VSLVADAD Sbjct 563 RLDNLNELVSVAREFSSEAANEMAFLGADAEEAPELSEGEAAPGSLQAFLEKVSLVADAD 622 Query 584 EIPEHGAGVVTLMTLHTAKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGIT 643 +IP+H +GVVTLMTLHTAKGLEFPVVF+TGWEDG FPHMR+L +P ELSEERRLAYVGIT Sbjct 623 QIPDHESGVVTLMTLHTAKGLEFPVVFLTGWEDGQFPHMRSLGDPKELSEERRLAYVGIT 682 Query 644 RARQRLYVSRAIVRSSWGQPMLNPESRFLREIPQELIDWRRTAPKPSFSAPVSG-----A 698 RAR++LY++RAI+RSSWG P+ NP SRFL E+P++LIDWRR P S S+ G Sbjct 683 RAREQLYLTRAILRSSWGNPVTNPASRFLAEVPEDLIDWRREEPDSSLSSAWGGDDSYQY 742 Query 699 GR-FGS----------------ARPSPTRSGASRRPL----------LVLQVGDRVTHDK 731 GR FGS A SP++ SR+P L L VGDRV H K Sbjct 743 GRTFGSDSGFFGSRGGGYGSRGAASSPSQR--SRKPAPATSMPKNNHLNLVVGDRVNHAK 800 Query 732 YGLGRVEEVSGVGESAMSLIDFGSSGRVKLM 762 YGLG V E SG G A +DFGS+G+V+LM Sbjct 801 YGLGTVIEASGTGARATVTVDFGSAGKVRLM 831 >gi|334696424|gb|AEG81221.1| ATP-dependent DNA helicase II [Corynebacterium ulcerans 809] Length=855 Score = 973 bits (2516), Expect = 0.0, Method: Compositional matrix adjust. Identities = 500/797 (63%), Positives = 599/797 (76%), Gaps = 44/797 (5%) Query 13 PSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILA 72 P AD L+ GLNPQQ+QAV H GSPLLIVAGAGSGKTAVLTRRIAYLM RGV GQILA Sbjct 65 PVMADDLVQGLNPQQQQAVEHSGSPLLIVAGAGSGKTAVLTRRIAYLMRIRGVQPGQILA 124 Query 73 ITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADD 132 ITFTNKAAAEMRERV LVG A MWVSTFHSTCVRILR QA L+ GLN+NF+IYD+DD Sbjct 125 ITFTNKAAAEMRERVAHLVGPIANRMWVSTFHSTCVRILREQAQLVAGLNTNFTIYDSDD 184 Query 133 SRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTEDSDDLARAVASVY 192 S+RLL M+ +D+ LDIK+++PRLL ISNLKNELI P A++ + VA+VY Sbjct 185 SKRLLAMISKDMNLDIKKFTPRLLGAGISNLKNELISPETAVSEAESTKNPYETTVAAVY 244 Query 193 DEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEYQDTNHAQYVLVR 252 EYQRRLR ANA+DFDDLIGETV + Q PQ+ +YYRRRFRHVL+DEYQDTNHAQYVL+ Sbjct 245 VEYQRRLRQANAVDFDDLIGETVRIFQEHPQVTEYYRRRFRHVLIDEYQDTNHAQYVLIH 304 Query 253 ELVGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTRTILLEQNYRSTQ 312 ELVG+ G ELCVVGD+DQSIYAFRGATIRNIE+FERDYPD T+LLEQNYRSTQ Sbjct 305 ELVGK----GPTASELCVVGDSDQSIYAFRGATIRNIEEFERDYPDATTVLLEQNYRSTQ 360 Query 313 NILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAEEIDALAEGSEIT 372 IL+AANSVI++N RR+K+LWT G+GE I GYVADNEHDEARF+A+EIDALA+ + Sbjct 361 TILNAANSVISQNENRRKKKLWTALGSGEPIAGYVADNEHDEARFIAQEIDALADKG-VD 419 Query 373 YNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAYLRVLDNPGDAVS 432 Y+D+A+ YRTNNSSR++E+V +R+GIPYKVVGG RFYERKEIRD++AYLR+LDNP D VS Sbjct 420 YSDIAIMYRTNNSSRAVEDVFMRSGIPYKVVGGTRFYERKEIRDVIAYLRLLDNPEDTVS 479 Query 433 LRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRAEKAIAGFVEM 492 LRRI+NTPRRGIGD+A A + +++EN GV F AL+ AA G++ +L R AI+GFV+M Sbjct 480 LRRIINTPRRGIGDKAVAFLTLHSENQGVSFQQALIDAAAGQISLLGARGRNAISGFVDM 539 Query 493 FDELRGRLDD---------DLGELVEAVLERTGYRRELEASTDPQELARLDNLNELVSVA 543 LR + D+G+++ +L+ TGY+ ELE S DPQ+ ARLDNLNELVSVA Sbjct 540 MAGLRTSAAESVNEITGMPDIGDVISQILDITGYKAELEKSNDPQDGARLDNLNELVSVA 599 Query 544 HEFSTDRENAAALGPDD----EDV-----PDTGVLADFLERVSLVADADEIPEHGAGVVT 594 EFS++ N A D ED+ P+ G L FLERVSLVADAD+IP++ G+VT Sbjct 600 REFSSEAANQVAYAKMDGGELEDLGGQGEPEPGSLQAFLERVSLVADADQIPDNEQGLVT 659 Query 595 LMTLHTAKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVSRA 654 LMTLHTAKGLEFPVVF+ GWEDG FPH+RAL +P EL+EERRLAYVGITRAR+ LY++RA Sbjct 660 LMTLHTAKGLEFPVVFLMGWEDGQFPHLRALGDPKELAEERRLAYVGITRARKTLYITRA 719 Query 655 IVRSSWGQPMLNPESRFLREIPQELIDWRRTAPKPSFSA---PVSGAGR-FGSAR----P 706 ++RSSWG P+ NP SRFL EIP++L+DWRR P+ SF + P G FGS+R Sbjct 720 MLRSSWGNPVTNPASRFLTEIPEDLLDWRREEPENSFDSWGQPSWGRNTGFGSSRGDSWG 779 Query 707 SPTRSGASRRPL-----------LVLQVGDRVTHDKYGLGRVEEVSGVGESAMSLIDFGS 755 SP R GA+ +P L L VGDRV HDKYGLG V +V + IDFGS Sbjct 780 SP-RYGATPKPKKTMPSYTKNSDLSLVVGDRVNHDKYGLGTVTKVDKGSPADSVTIDFGS 838 Query 756 SGRVKLMH-NHAPVTKL 771 SG V+LM P+ KL Sbjct 839 SGTVRLMLIGSVPMEKL 855 >gi|300858060|ref|YP_003783043.1| ATP-dependent DNA helicase II [Corynebacterium pseudotuberculosis FRC41] gi|300685514|gb|ADK28436.1| ATP-dependent DNA helicase II [Corynebacterium pseudotuberculosis FRC41] Length=846 Score = 973 bits (2515), Expect = 0.0, Method: Compositional matrix adjust. Identities = 497/795 (63%), Positives = 594/795 (75%), Gaps = 42/795 (5%) Query 5 ATDAKPPGPS-PADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLMAAR 63 A D +P S PAD L+ GLNPQQ+QAV H GSPLLIVAGAGSGKTAVLTRRIAYLM R Sbjct 47 AKDQQPASTSAPADDLVQGLNPQQQQAVEHSGSPLLIVAGAGSGKTAVLTRRIAYLMRIR 106 Query 64 GVGVGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEGLNS 123 GV GQILAITFTNKAAAEMRERV LVG A MWVSTFHSTCVRILR QA L+ GLNS Sbjct 107 GVQPGQILAITFTNKAAAEMRERVAHLVGPIASRMWVSTFHSTCVRILREQAQLVAGLNS 166 Query 124 NFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTEDSDD 183 NF+IYD+DDS+RLL M+ +D+ LDIK+++PRLL ISNLKNELI P A+A + Sbjct 167 NFTIYDSDDSKRLLAMISKDMNLDIKKFTPRLLGAGISNLKNELISPATAVAEAESTKNP 226 Query 184 LARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEYQDT 243 VA+VY EYQRRLR ANA+DFDDLIGETV + + PQI +YYRRRFRHVL+DEYQDT Sbjct 227 YETTVAAVYVEYQRRLRQANAVDFDDLIGETVRIFKEHPQITEYYRRRFRHVLIDEYQDT 286 Query 244 NHAQYVLVRELVGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTRTIL 303 NHAQYVL+ ELVG G ELCVVGD+DQSIYAFRGATIRNIE+FERDYP+ T+L Sbjct 287 NHAQYVLIHELVGT----GETASELCVVGDSDQSIYAFRGATIRNIEEFERDYPNATTVL 342 Query 304 LEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAEEID 363 LEQNYRSTQ IL+AANSVI++N RR+K+LWT G+G+ I GYVADNEHDEARF+A+EID Sbjct 343 LEQNYRSTQTILNAANSVISQNENRRKKKLWTALGSGDPITGYVADNEHDEARFIAQEID 402 Query 364 ALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAYLRV 423 ALA+ I Y+D+A+ YRTNNSSR++E+V +R+GIPYKVVGG RFYERKEIRD++AYLR+ Sbjct 403 ALADKG-IDYSDMAIMYRTNNSSRAVEDVFMRSGIPYKVVGGTRFYERKEIRDVIAYLRL 461 Query 424 LDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRAE 483 LDNP D VSLRRI+NTPRRGIGD+A A + +++EN GV AL+ A++G+V +L R Sbjct 462 LDNPEDTVSLRRIINTPRRGIGDKAVAFLTLHSENQGVSLQQALIDASEGQVSLLGARGC 521 Query 484 KAIAGFVEMFDELRGRLDD---------DLGELVEAVLERTGYRRELEASTDPQELARLD 534 AI+GFV M LR + D+G ++ +L+ TGY+ ELE S DPQ+ ARLD Sbjct 522 NAISGFVNMMSGLRDSAAESVNEITGMPDIGNVIAQILDITGYKAELEKSNDPQDGARLD 581 Query 535 NLNELVSVAHEFSTDRENAAAL----GPDDEDV-----PDTGVLADFLERVSLVADADEI 585 NLNELVSVA EFS++ N A G + +D+ P+ G L FLERVSLVADAD+I Sbjct 582 NLNELVSVAREFSSEAANQVAYAKMDGSELDDLAAVGEPEPGSLQAFLERVSLVADADQI 641 Query 586 PEHGAGVVTLMTLHTAKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRA 645 P++ G+VTLMTLHTAKGLEFPVVF+ GWEDG FPH+RAL +P EL+EERRLAYVGITRA Sbjct 642 PDNEQGLVTLMTLHTAKGLEFPVVFLMGWEDGQFPHLRALGDPKELAEERRLAYVGITRA 701 Query 646 RQRLYVSRAIVRSSWGQPMLNPESRFLREIPQELIDWRRTAPKPSFSA------------ 693 R+ LY++RA++RSSWG P+ NP SRFL EIPQEL+DWRR P+ SF A Sbjct 702 RKALYITRAMLRSSWGNPVTNPASRFLTEIPQELLDWRREEPESSFDAWGQPSWGRNTGF 761 Query 694 -----PVSGAGRFG-SARPSPTRSGASRRPLLVLQVGDRVTHDKYGLGRVEEVSGVGESA 747 G+ R+G S +P T ++ L L VGDRV HDKYGLG V +V + Sbjct 762 SSARGDSWGSPRYGASPKPKKTMPSYAKNSDLSLVVGDRVNHDKYGLGTVTKVDKGSPAD 821 Query 748 MSLIDFGSSGRVKLM 762 IDFGSSG V+LM Sbjct 822 SVTIDFGSSGTVRLM 836 >gi|300781705|ref|ZP_07091559.1| ATP-dependent DNA helicase PcrA [Corynebacterium genitalium ATCC 33030] gi|300533412|gb|EFK54473.1| ATP-dependent DNA helicase PcrA [Corynebacterium genitalium ATCC 33030] Length=764 Score = 965 bits (2495), Expect = 0.0, Method: Compositional matrix adjust. Identities = 492/761 (65%), Positives = 580/761 (77%), Gaps = 34/761 (4%) Query 22 GLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITFTNKAAA 81 GLNPQQ+ AV H GSPLLIVAGAGSGKTAVLTRRIAYL+ RGV +ILAITFTNKAAA Sbjct 8 GLNPQQKAAVEHTGSPLLIVAGAGSGKTAVLTRRIAYLLQERGVAPWEILAITFTNKAAA 67 Query 82 EMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRRLLQMVG 141 EM+ERV L+G +A MWV+TFHS CVRILR QA L+ GLN+NF+IYD DDSRRLL M+ Sbjct 68 EMKERVGALIGPQAERMWVATFHSVCVRILRQQAQLVPGLNTNFTIYDGDDSRRLLGMIA 127 Query 142 RDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTEDSDDLARAVASVYDEYQRRLRA 201 +++ LD+K++S R LAN ISNLKNELI P +A A + VA+VY +YQRRLR Sbjct 128 KEMNLDLKKFSARTLANGISNLKNELIGPEEAAANAQTTKNPFEVTVAAVYTQYQRRLRE 187 Query 202 ANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEYQDTNHAQYVLVRELVGRDSND 261 NA+DFDDLIGE V + + PQ+ +YYRRRFRHVLVDEYQDTNHAQY L+ LVG + Sbjct 188 GNAVDFDDLIGEVVGLFKQHPQVVEYYRRRFRHVLVDEYQDTNHAQYELIHTLVG----N 243 Query 262 GIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTRTILLEQNYRSTQNILSAANSV 321 G EL VVGD+DQSIYAFRGATIRNIE+FERDYP+ TILLEQNYRSTQNIL+AAN+V Sbjct 244 GPDAPELAVVGDSDQSIYAFRGATIRNIEEFERDYPNATTILLEQNYRSTQNILAAANAV 303 Query 322 IARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAEEIDALAEGSEITYNDVAVFYR 381 IA+NAGRR K+LWTD G GE IVGYVADNEHDEARFV+ EID L + + Y D+AV YR Sbjct 304 IAQNAGRRPKKLWTDTGTGEKIVGYVADNEHDEARFVSTEIDELTDRG-VQYGDIAVMYR 362 Query 382 TNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAYLRVLDNPGDAVSLRRILNTPR 441 TNNSSR+LE++ IRAG+PYKVVGG RFYER+EIRDIVAYLR+LDNP D+VS+RRI+N P+ Sbjct 363 TNNSSRALEDIFIRAGVPYKVVGGTRFYERREIRDIVAYLRILDNPDDSVSMRRIINVPK 422 Query 442 RGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRAEKAIAGFVEMFDELRGRLD 501 R IGD+A+A VA++A+N G+ FG AL+ A G++P L RA+ AI GFVEM LR L Sbjct 423 RAIGDKAQAMVALHADNHGMSFGRALIDGAAGEIPTLGPRAKNAIGGFVEMIQGLRDELP 482 Query 502 D---------DLGELVEAVLERTGYRRELEASTDPQELARLDNLNELVSVAHEFSTDREN 552 + DLG LV +L+ TGY+ ELEAS DPQ+ ARLDNLNELVSVA EFS++ N Sbjct 483 ELRNEVTGMPDLGALVTRILDVTGYKAELEASNDPQDGARLDNLNELVSVAREFSSEAAN 542 Query 553 AAALGPDDEDVPDT-----GVLADFLERVSLVADADEIPEHGAGVVTLMTLHTAKGLEFP 607 A G +E P++ G L FLERVSLVADAD+IP+ G GVVTLMTLHTAKGLEFP Sbjct 543 QMAYG--EEWDPESGEAQPGSLQAFLERVSLVADADQIPDEGQGVVTLMTLHTAKGLEFP 600 Query 608 VVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVSRAIVRSSWGQPMLNP 667 VVFVTGWEDG FPHMRA+ +P EL+EERRLAYVGITRAR+RLY++RA+ RSSWG PM NP Sbjct 601 VVFVTGWEDGQFPHMRAMGDPAELAEERRLAYVGITRARERLYLTRALTRSSWGSPMNNP 660 Query 668 ESRFLREIPQELIDWRRTAPKPSFSAPVSGAGRFGSARPSPTRSGASRR---PL---LVL 721 SRFL E+P++L+DWRR P+ SFS G+ P+P+R RR P+ L L Sbjct 661 ASRFLAEVPEDLLDWRRVEPEYSFSNEAWGS-------PAPSRRAMPRRERTPVNKDLHL 713 Query 722 QVGDRVTHDKYGLGRVEEVSGVGESAMSLIDFGSSGRVKLM 762 GDRV H KYGLG V V GVG IDFGSSG V+LM Sbjct 714 AKGDRVNHAKYGLGTVMSVDGVGARETVTIDFGSSGTVRLM 754 >gi|302330341|gb|ADL20535.1| ATP-dependent DNA helicase pcrA [Corynebacterium pseudotuberculosis 1002] Length=785 Score = 963 bits (2489), Expect = 0.0, Method: Compositional matrix adjust. Identities = 488/780 (63%), Positives = 586/780 (76%), Gaps = 41/780 (5%) Query 19 LLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITFTNK 78 ++ GLNPQQ+QAV H GSPLLIVAGAGSGKTAVLTRRIAYLM RGV GQILAITFTNK Sbjct 1 MVQGLNPQQQQAVEHSGSPLLIVAGAGSGKTAVLTRRIAYLMRIRGVQPGQILAITFTNK 60 Query 79 AAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRRLLQ 138 AAAEMRERV LVG A MWVSTFHSTCVRILR QA L+ GLNSNF+IYD+DDS+RLL Sbjct 61 AAAEMRERVAHLVGPIASRMWVSTFHSTCVRILREQAQLVAGLNSNFTIYDSDDSKRLLA 120 Query 139 MVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTEDSDDLARAVASVYDEYQRR 198 M+ +D+ LDIK+++PRLL ISNLKNELI P A+A + VA+VY EYQRR Sbjct 121 MISKDMNLDIKKFTPRLLGAGISNLKNELISPATAVAEAESTKNPYETTVAAVYVEYQRR 180 Query 199 LRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEYQDTNHAQYVLVRELVGRD 258 LR ANA+DFDDLIGETV + + PQ+ +YYRRRFRHVL+DEYQDTNHAQYVL+ ELVG Sbjct 181 LRQANAVDFDDLIGETVRIFKEHPQVTEYYRRRFRHVLIDEYQDTNHAQYVLIHELVG-- 238 Query 259 SNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTRTILLEQNYRSTQNILSAA 318 G ELCVVGD+DQSIYAFRGATIRNIE+FERDYP+ T+LLEQNYRSTQ IL+AA Sbjct 239 --TGETASELCVVGDSDQSIYAFRGATIRNIEEFERDYPNATTVLLEQNYRSTQTILNAA 296 Query 319 NSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAEEIDALAEGSEITYNDVAV 378 NSVI++N RR+K+LWT G+G+ I GYVADNEHDEARF+A+EIDALA+ I Y+D+A+ Sbjct 297 NSVISQNENRRKKKLWTALGSGDPITGYVADNEHDEARFIAQEIDALADKG-IDYSDMAI 355 Query 379 FYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAYLRVLDNPGDAVSLRRILN 438 YRTNNSSR++E+V +R+GIPYKVVGG RFYERKEIRD++AYLR+LDNP D VSLRRI+N Sbjct 356 MYRTNNSSRAVEDVFMRSGIPYKVVGGTRFYERKEIRDVIAYLRLLDNPEDTVSLRRIIN 415 Query 439 TPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRAEKAIAGFVEMFDELRG 498 TPRRGIGD+A A + +++EN GV AL+ A++G+V +L R AI+GFV M LR Sbjct 416 TPRRGIGDKAVAFLTLHSENQGVSLQQALIDASEGQVSLLGARGRNAISGFVNMMSGLRD 475 Query 499 RLDD---------DLGELVEAVLERTGYRRELEASTDPQELARLDNLNELVSVAHEFSTD 549 + D+G ++ +L+ TGY+ ELE S DPQ+ ARLDNLNELVSVA EFS++ Sbjct 476 SAAESVNEITGMPDIGNVIAQILDITGYKAELEKSNDPQDGARLDNLNELVSVAREFSSE 535 Query 550 RENAAAL----GPDDEDV-----PDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHT 600 N A G + +D+ P+ G L FLERVSLVADAD+IP++ G+VTLMTLHT Sbjct 536 AANQVAYAKMDGSELDDLAAVGEPEPGSLQAFLERVSLVADADQIPDNEQGLVTLMTLHT 595 Query 601 AKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVSRAIVRSSW 660 AKGLEFPVVF+ GWEDG FPH+RAL +P EL+EERRLAYVGITRAR+ LY++RA++RSSW Sbjct 596 AKGLEFPVVFLMGWEDGQFPHLRALGDPKELAEERRLAYVGITRARKALYITRAMLRSSW 655 Query 661 GQPMLNPESRFLREIPQELIDWRRTAPKPSFSA-----------------PVSGAGRFG- 702 G P+ NP SRFL EIPQEL+DWRR P+ SF A G+ R+G Sbjct 656 GNPVTNPASRFLTEIPQELLDWRREEPESSFDAWGQPSWGRNTGFSSARGDSWGSPRYGA 715 Query 703 SARPSPTRSGASRRPLLVLQVGDRVTHDKYGLGRVEEVSGVGESAMSLIDFGSSGRVKLM 762 S +P T ++ L L VGDRV HDKYGLG V +V + IDFGSSG V+LM Sbjct 716 SPKPKKTMPSYAKNSDLSLVVGDRVNHDKYGLGTVTKVDKGSPADSVTIDFGSSGTVRLM 775 >gi|326383701|ref|ZP_08205386.1| ATP-dependent DNA helicase PcrA [Gordonia neofelifaecis NRRL B-59395] gi|326197465|gb|EGD54654.1| ATP-dependent DNA helicase PcrA [Gordonia neofelifaecis NRRL B-59395] Length=834 Score = 961 bits (2484), Expect = 0.0, Method: Compositional matrix adjust. Identities = 507/812 (63%), Positives = 597/812 (74%), Gaps = 73/812 (8%) Query 18 QLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITFTN 77 +LLDGLNPQQR AV+H GSPLLIVAGAGSGKTAVLTRRIA+L+A R V GQILAITFTN Sbjct 19 ELLDGLNPQQRDAVLHTGSPLLIVAGAGSGKTAVLTRRIAFLLAERDVTPGQILAITFTN 78 Query 78 KAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRRLL 137 KAAAEMRERV+ LVG +A YMWVSTFHSTCVRILR Q+ L+ NSNFSIYDADDSRRLL Sbjct 79 KAAAEMRERVIDLVGPRAAYMWVSTFHSTCVRILRAQSGLLGNRNSNFSIYDADDSRRLL 138 Query 138 QMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTE--DSDDLARAVASVYDEY 195 MV RDL LD K++SPR + ISN KNEL DP A A +D A +A +Y EY Sbjct 139 GMVVRDLDLDPKKFSPRGVGTQISNFKNELKDPDDAAAEAEADGQTDLAAGTIAQIYAEY 198 Query 196 QRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEYQDTNHAQYVLVRELV 255 QRRL AANA DFDDLIGETV++LQ P +A+YYRRRFRHVL+DEYQDTNHAQYVLVRELV Sbjct 199 QRRLAAANAFDFDDLIGETVSLLQRHPNVAEYYRRRFRHVLIDEYQDTNHAQYVLVRELV 258 Query 256 GRD-SNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTRTILLEQNYRSTQNI 314 G + S G+ P ELCVVGDADQSIYAFRGATIRNIE+FERDYP+ TILLEQNYRSTQ I Sbjct 259 GDETSQSGVDPSELCVVGDADQSIYAFRGATIRNIEEFERDYPNAETILLEQNYRSTQTI 318 Query 315 LSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAEEIDALAEGS----- 369 LSAAN+VI+RNA RREK+LWTD+G G+LIVGYVAD++ DEA F+A+EI+ L + S Sbjct 319 LSAANAVISRNANRREKKLWTDSGDGDLIVGYVADSDRDEAAFIAKEIEELVDYSIGGSA 378 Query 370 EITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAYLRVLDNPGD 429 TY D+AVFYRTN SRSLEEV +R GIPYKVVGG +FYERKE+RDIVAYLRV+ NP D Sbjct 379 SHTYADLAVFYRTNTGSRSLEEVFVRHGIPYKVVGGTKFYERKEVRDIVAYLRVVANPDD 438 Query 430 AVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRAEKAIAGF 489 +VSLRRILNTPRRGIGDRAEACVAV+AEN G+ F ALV A + +VP+LNTRA K I F Sbjct 439 SVSLRRILNTPRRGIGDRAEACVAVHAENLGISFYQALVEATENRVPLLNTRAVKQITLF 498 Query 490 VEMFDELRG------------RLDD----------DLGELVEAVLERTGYRRELEASTDP 527 V++ + LR +DD D+GELV+A+++R+GYR ELEAS DP Sbjct 499 VDLIEGLRSDFLMAFGAVGGESVDDAVADATTEGADVGELVDAIVDRSGYRAELEASNDP 558 Query 528 QELARLDNLNELVSVAHEFSTDRENAAALGPDD------------EDVPDTGVLADFLER 575 Q+ AR+DNLNEL++VA +FS + DD + P+ G LA FLE+ Sbjct 559 QDAARMDNLNELIAVARDFSVEAAQRDDDDLDDADEATDDAEVVGDGEPEPGSLAAFLEK 618 Query 576 VSLVADADEIPEHGAGVVTLMTLHTAKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEER 635 V+LVADAD++P+ G GVVT+MTLHTAKGLEFPVVFVTGWEDG FPHMRAL +P ELSEER Sbjct 619 VALVADADQVPDEGEGVVTMMTLHTAKGLEFPVVFVTGWEDGHFPHMRALGDPAELSEER 678 Query 636 RLAYVGITRARQRLYVSRAIVRSSWGQPMLNPESRFLREIPQELIDWRRTAPK------- 688 RLAYVGITRARQ+LY++RA+ R+SWGQP+ NPESRFL+E+PQ LIDWRRT PK Sbjct 679 RLAYVGITRARQKLYLTRAMSRASWGQPVSNPESRFLQEVPQHLIDWRRTEPKRGMREFG 738 Query 689 -----------------PSFSAPVSGAGRFGSARPSPTRSGASRRPLLVLQVGDRVTHDK 731 FS+ + G + S PTR R + ++GDR+ H + Sbjct 739 SRGGSFGFGSAGGSSNDSGFSSGMRGRSSYSS---DPTR---GRNKNVHYEIGDRMNHPQ 792 Query 732 YGLGRVEEVSGVGESAMSLIDFGSS-GRVKLM 762 YG+G+ G G + DFG + GRV LM Sbjct 793 YGMGKAVAKEGSGVTERITFDFGGNVGRVTLM 824 Lambda K H 0.318 0.136 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1847749671852 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40