BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0955 Length=455 Score E Sequences producing significant alignments: (Bits) Value gi|15608095|ref|NP_215470.1| integral membrane protein [Mycobact... 865 0.0 gi|340625968|ref|YP_004744420.1| putative integral membrane prot... 860 0.0 gi|167967728|ref|ZP_02550005.1| conserved integral membrane prot... 859 0.0 gi|294996442|ref|ZP_06802133.1| hypothetical protein Mtub2_18544... 810 0.0 gi|308231678|ref|ZP_07413422.2| hypothetical protein TMAG_00890 ... 809 0.0 gi|240169367|ref|ZP_04748026.1| integral membrane protein [Mycob... 580 2e-163 gi|118462881|ref|YP_880333.1| hypothetical protein MAV_1079 [Myc... 564 1e-158 gi|254773959|ref|ZP_05215475.1| hypothetical protein MaviaA2_046... 564 1e-158 gi|336461425|gb|EGO40296.1| hypothetical protein MAPs_31660 [Myc... 561 9e-158 gi|41406999|ref|NP_959835.1| hypothetical protein MAP0901 [Mycob... 561 1e-157 gi|296169716|ref|ZP_06851333.1| integral membrane protein [Mycob... 547 2e-153 gi|254823463|ref|ZP_05228464.1| hypothetical protein MintA_26271... 525 9e-147 gi|342860565|ref|ZP_08717216.1| hypothetical protein MCOL_16861 ... 521 1e-145 gi|15826981|ref|NP_301244.1| hypothetical protein ML0159 [Mycoba... 512 5e-143 gi|183984514|ref|YP_001852805.1| integral membrane protein [Myco... 505 7e-141 gi|118619785|ref|YP_908117.1| integral membrane protein [Mycobac... 494 1e-137 gi|15705920|gb|AAL05878.1|AF411607_2 unknown [Mycobacterium aviu... 482 5e-134 gi|118473475|ref|YP_889754.1| hypothetical protein MSMEG_5517 [M... 475 6e-132 gi|326904820|gb|EGE51753.1| conserved membrane protein [Mycobact... 470 2e-130 gi|120405808|ref|YP_955637.1| hypothetical protein Mvan_4858 [My... 457 2e-126 gi|169628157|ref|YP_001701806.1| hypothetical protein MAB_1062 [... 446 5e-123 gi|126437266|ref|YP_001072957.1| hypothetical protein Mjls_4701 ... 437 2e-120 gi|333989542|ref|YP_004522156.1| hypothetical protein JDM601_090... 428 1e-117 gi|108801285|ref|YP_641482.1| hypothetical protein Mmcs_4321 [My... 420 2e-115 gi|145222463|ref|YP_001133141.1| hypothetical protein Mflv_1873 ... 410 2e-112 gi|315442908|ref|YP_004075787.1| hypothetical protein Mspyr1_127... 408 8e-112 gi|326904823|gb|EGE51756.1| LOW QUALITY PROTEIN: hypothetical pr... 394 2e-107 gi|226365055|ref|YP_002782838.1| hypothetical protein ROP_56460 ... 220 3e-55 gi|111022543|ref|YP_705515.1| hypothetical protein RHA1_ro05577 ... 206 9e-51 gi|226307912|ref|YP_002767872.1| hypothetical protein RER_44250 ... 187 3e-45 gi|229495092|ref|ZP_04388838.1| conserved hypothetical protein [... 186 6e-45 gi|262201334|ref|YP_003272542.1| hypothetical protein Gbro_1365 ... 179 1e-42 gi|54026962|ref|YP_121204.1| hypothetical protein nfa49880 [Noca... 166 7e-39 gi|296140987|ref|YP_003648230.1| hypothetical protein Tpau_3306 ... 165 2e-38 gi|312138587|ref|YP_004005923.1| integral membrane protein [Rhod... 155 2e-35 gi|325676346|ref|ZP_08156025.1| hypothetical protein HMPREF0724_... 155 2e-35 gi|296393910|ref|YP_003658794.1| hypothetical protein Srot_1500 ... 153 5e-35 gi|317508748|ref|ZP_07966399.1| hypothetical protein HMPREF9336_... 143 8e-32 gi|343927180|ref|ZP_08766659.1| hypothetical protein GOALK_086_0... 125 2e-26 gi|337290310|ref|YP_004629331.1| hypothetical protein CULC22_006... 113 6e-23 gi|172040212|ref|YP_001799926.1| hypothetical protein cur_0532 [... 112 1e-22 gi|326383721|ref|ZP_08205406.1| hypothetical protein SCNU_12317 ... 112 2e-22 gi|334696426|gb|AEG81223.1| putative membrane protein [Corynebac... 111 2e-22 gi|213964979|ref|ZP_03393178.1| membrane protein [Corynebacteriu... 111 2e-22 gi|145295030|ref|YP_001137851.1| hypothetical protein cgR_0974 [... 111 2e-22 gi|333921238|ref|YP_004494819.1| hypothetical protein AS9A_3581 ... 108 2e-21 gi|344043602|gb|EGV39291.1| hypothetical protein CgS9114_13850 [... 108 2e-21 gi|21323625|dbj|BAB98252.1| Hypothetical membrane protein [Coryn... 108 2e-21 gi|19552086|ref|NP_600088.1| hypothetical protein NCgl0825 [Cory... 105 2e-20 gi|340795064|ref|YP_004760527.1| hypothetical protein CVAR_2104 ... 103 4e-20 >gi|15608095|ref|NP_215470.1| integral membrane protein [Mycobacterium tuberculosis H37Rv] gi|15840379|ref|NP_335416.1| hypothetical protein MT0982 [Mycobacterium tuberculosis CDC1551] gi|31792144|ref|NP_854637.1| integral membrane protein [Mycobacterium bovis AF2122/97] 48 more sequence titles Length=455 Score = 865 bits (2236), Expect = 0.0, Method: Compositional matrix adjust. Identities = 454/455 (99%), Positives = 455/455 (100%), Gaps = 0/455 (0%) Query 1 VNRVSASADDRAAGARPARDLVRVAFGPGVVALGIIAAVTLLQLLIANSDMTGAWGAIAS 60 +NRVSASADDRAAGARPARDLVRVAFGPGVVALGIIAAVTLLQLLIANSDMTGAWGAIAS Sbjct 1 MNRVSASADDRAAGARPARDLVRVAFGPGVVALGIIAAVTLLQLLIANSDMTGAWGAIAS 60 Query 61 MWLGVHLVPISIGGRALGVMPLLPVLLMVWATARSTARATSPQSSGLVVRWVVASALGGP 120 MWLGVHLVPISIGGRALGVMPLLPVLLMVWATARSTARATSPQSSGLVVRWVVASALGGP Sbjct 61 MWLGVHLVPISIGGRALGVMPLLPVLLMVWATARSTARATSPQSSGLVVRWVVASALGGP 120 Query 121 LLMAAIALAVIHDASSVVTELQTPSALRAFTSVLVVHSVGAATGVWSRVGRRALAATALP 180 LLMAAIALAVIHDASSVVTELQTPSALRAFTSVLVVHSVGAATGVWSRVGRRALAATALP Sbjct 121 LLMAAIALAVIHDASSVVTELQTPSALRAFTSVLVVHSVGAATGVWSRVGRRALAATALP 180 Query 181 DWLHDSMRAAAAGVLALLGLSGVVTAGSLVVHWATMQELYGITDSIFGQFSLTVLSVLYA 240 DWLHDSMRAAAAGVLALLGLSGVVTAGSLVVHWATMQELYGITDSIFGQFSLTVLSVLYA Sbjct 181 DWLHDSMRAAAAGVLALLGLSGVVTAGSLVVHWATMQELYGITDSIFGQFSLTVLSVLYA 240 Query 241 PNVIVGTSAIAVGSSAHIGFATFSSFAVLGGDIPALPILAAAPTPPLGPAWVALLIVGAS 300 PNVIVGTSAIAVGSSAHIGFATFSSFAVLGGDIPALPILAAAPTPPLGPAWVALLIVGAS Sbjct 241 PNVIVGTSAIAVGSSAHIGFATFSSFAVLGGDIPALPILAAAPTPPLGPAWVALLIVGAS 300 Query 301 SGVAVGQQCARRALPFVAAMAKLLVAAVAGALVMAVLGYGGGGRLGNFGDVGVDEGALVL 360 SGVAVGQQCARRALPFVAAMAKLLVAAVAGALVMAVLGYGGGGRLGNFGDVGVDEGALVL Sbjct 301 SGVAVGQQCARRALPFVAAMAKLLVAAVAGALVMAVLGYGGGGRLGNFGDVGVDEGALVL 360 Query 361 GVLFWFTFVGWVTVVIAGGISRRPKRLRPAPPVELDADESSPPVDMFDGAASEQPPASVA 420 GVLFWFTFVGWVTVVIAGGISRRPKRLRPAPPVELDADESSPPVDMFDGAASEQPPASVA Sbjct 361 GVLFWFTFVGWVTVVIAGGISRRPKRLRPAPPVELDADESSPPVDMFDGAASEQPPASVA 420 Query 421 EDVPPSHDDIANGLKAPTADDEALPLSDEPPPRAD 455 EDVPPSHDDIANGLKAPTADDEALPLSDEPPPRAD Sbjct 421 EDVPPSHDDIANGLKAPTADDEALPLSDEPPPRAD 455 >gi|340625968|ref|YP_004744420.1| putative integral membrane protein [Mycobacterium canettii CIPT 140010059] gi|340004158|emb|CCC43296.1| putative conserved integral membrane protein [Mycobacterium canettii CIPT 140010059] Length=455 Score = 860 bits (2223), Expect = 0.0, Method: Compositional matrix adjust. Identities = 452/455 (99%), Positives = 453/455 (99%), Gaps = 0/455 (0%) Query 1 VNRVSASADDRAAGARPARDLVRVAFGPGVVALGIIAAVTLLQLLIANSDMTGAWGAIAS 60 +NRVSASA DRAAGARPARDLVRVAFGPGVVALGIIAAVTLLQLLIANSDMTGAWGAIAS Sbjct 1 MNRVSASAGDRAAGARPARDLVRVAFGPGVVALGIIAAVTLLQLLIANSDMTGAWGAIAS 60 Query 61 MWLGVHLVPISIGGRALGVMPLLPVLLMVWATARSTARATSPQSSGLVVRWVVASALGGP 120 MWLGVHLVPISIGGRALGVMPLLPVLLMVWATARSTARATSPQSSGLVVRWVVASALGGP Sbjct 61 MWLGVHLVPISIGGRALGVMPLLPVLLMVWATARSTARATSPQSSGLVVRWVVASALGGP 120 Query 121 LLMAAIALAVIHDASSVVTELQTPSALRAFTSVLVVHSVGAATGVWSRVGRRALAATALP 180 LLMAAIALAVIHDASSVVTELQTPSALRAFTSVLVVHSVGAATGVWSRVGRRALAATALP Sbjct 121 LLMAAIALAVIHDASSVVTELQTPSALRAFTSVLVVHSVGAATGVWSRVGRRALAATALP 180 Query 181 DWLHDSMRAAAAGVLALLGLSGVVTAGSLVVHWATMQELYGITDSIFGQFSLTVLSVLYA 240 DWLHDSMRAAAAGVLALLGLSGVVTAGSLVVHWATMQELYGITDSIFGQFSLTVLSVLYA Sbjct 181 DWLHDSMRAAAAGVLALLGLSGVVTAGSLVVHWATMQELYGITDSIFGQFSLTVLSVLYA 240 Query 241 PNVIVGTSAIAVGSSAHIGFATFSSFAVLGGDIPALPILAAAPTPPLGPAWVALLIVGAS 300 PNVIVGTSAIAVGSSAHIGFATFSSFAVLGGDIPALPILAAAPTPPLGPAWVALLIVGAS Sbjct 241 PNVIVGTSAIAVGSSAHIGFATFSSFAVLGGDIPALPILAAAPTPPLGPAWVALLIVGAS 300 Query 301 SGVAVGQQCARRALPFVAAMAKLLVAAVAGALVMAVLGYGGGGRLGNFGDVGVDEGALVL 360 SGVAVGQQCARRALP VAAMAKLLVAAVAGALVMAVLGYGGGGRLGNFGDVGVDEGALVL Sbjct 301 SGVAVGQQCARRALPLVAAMAKLLVAAVAGALVMAVLGYGGGGRLGNFGDVGVDEGALVL 360 Query 361 GVLFWFTFVGWVTVVIAGGISRRPKRLRPAPPVELDADESSPPVDMFDGAASEQPPASVA 420 GVLFWFTFVGWVTVVIAGGISRRPKRLRPAPPVELDADESSPPVDMFDGAASEQPPASVA Sbjct 361 GVLFWFTFVGWVTVVIAGGISRRPKRLRPAPPVELDADESSPPVDMFDGAASEQPPASVA 420 Query 421 EDVPPSHDDIANGLKAPTADDEALPLSDEPPPRAD 455 EDVPPSHDDIANGLKAPTADDEALPLSDEPPPRAD Sbjct 421 EDVPPSHDDIANGLKAPTADDEALPLSDEPPPRAD 455 >gi|167967728|ref|ZP_02550005.1| conserved integral membrane protein [Mycobacterium tuberculosis H37Ra] gi|254549935|ref|ZP_05140382.1| hypothetical protein Mtube_05648 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|297730462|ref|ZP_06959580.1| hypothetical protein MtubKR_05191 [Mycobacterium tuberculosis KZN R506] gi|313657790|ref|ZP_07814670.1| hypothetical protein MtubKV_05186 [Mycobacterium tuberculosis KZN V2475] gi|323720666|gb|EGB29744.1| membrane protein [Mycobacterium tuberculosis CDC1551A] gi|339297599|gb|AEJ49709.1| integral membrane protein [Mycobacterium tuberculosis CCDC5180] Length=452 Score = 859 bits (2219), Expect = 0.0, Method: Compositional matrix adjust. Identities = 451/452 (99%), Positives = 452/452 (100%), Gaps = 0/452 (0%) Query 4 VSASADDRAAGARPARDLVRVAFGPGVVALGIIAAVTLLQLLIANSDMTGAWGAIASMWL 63 +SASADDRAAGARPARDLVRVAFGPGVVALGIIAAVTLLQLLIANSDMTGAWGAIASMWL Sbjct 1 MSASADDRAAGARPARDLVRVAFGPGVVALGIIAAVTLLQLLIANSDMTGAWGAIASMWL 60 Query 64 GVHLVPISIGGRALGVMPLLPVLLMVWATARSTARATSPQSSGLVVRWVVASALGGPLLM 123 GVHLVPISIGGRALGVMPLLPVLLMVWATARSTARATSPQSSGLVVRWVVASALGGPLLM Sbjct 61 GVHLVPISIGGRALGVMPLLPVLLMVWATARSTARATSPQSSGLVVRWVVASALGGPLLM 120 Query 124 AAIALAVIHDASSVVTELQTPSALRAFTSVLVVHSVGAATGVWSRVGRRALAATALPDWL 183 AAIALAVIHDASSVVTELQTPSALRAFTSVLVVHSVGAATGVWSRVGRRALAATALPDWL Sbjct 121 AAIALAVIHDASSVVTELQTPSALRAFTSVLVVHSVGAATGVWSRVGRRALAATALPDWL 180 Query 184 HDSMRAAAAGVLALLGLSGVVTAGSLVVHWATMQELYGITDSIFGQFSLTVLSVLYAPNV 243 HDSMRAAAAGVLALLGLSGVVTAGSLVVHWATMQELYGITDSIFGQFSLTVLSVLYAPNV Sbjct 181 HDSMRAAAAGVLALLGLSGVVTAGSLVVHWATMQELYGITDSIFGQFSLTVLSVLYAPNV 240 Query 244 IVGTSAIAVGSSAHIGFATFSSFAVLGGDIPALPILAAAPTPPLGPAWVALLIVGASSGV 303 IVGTSAIAVGSSAHIGFATFSSFAVLGGDIPALPILAAAPTPPLGPAWVALLIVGASSGV Sbjct 241 IVGTSAIAVGSSAHIGFATFSSFAVLGGDIPALPILAAAPTPPLGPAWVALLIVGASSGV 300 Query 304 AVGQQCARRALPFVAAMAKLLVAAVAGALVMAVLGYGGGGRLGNFGDVGVDEGALVLGVL 363 AVGQQCARRALPFVAAMAKLLVAAVAGALVMAVLGYGGGGRLGNFGDVGVDEGALVLGVL Sbjct 301 AVGQQCARRALPFVAAMAKLLVAAVAGALVMAVLGYGGGGRLGNFGDVGVDEGALVLGVL 360 Query 364 FWFTFVGWVTVVIAGGISRRPKRLRPAPPVELDADESSPPVDMFDGAASEQPPASVAEDV 423 FWFTFVGWVTVVIAGGISRRPKRLRPAPPVELDADESSPPVDMFDGAASEQPPASVAEDV Sbjct 361 FWFTFVGWVTVVIAGGISRRPKRLRPAPPVELDADESSPPVDMFDGAASEQPPASVAEDV 420 Query 424 PPSHDDIANGLKAPTADDEALPLSDEPPPRAD 455 PPSHDDIANGLKAPTADDEALPLSDEPPPRAD Sbjct 421 PPSHDDIANGLKAPTADDEALPLSDEPPPRAD 452 >gi|294996442|ref|ZP_06802133.1| hypothetical protein Mtub2_18544 [Mycobacterium tuberculosis 210] gi|297633477|ref|ZP_06951257.1| hypothetical protein MtubK4_05111 [Mycobacterium tuberculosis KZN 4207] gi|306782001|ref|ZP_07420338.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002] 6 more sequence titles Length=426 Score = 810 bits (2093), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/426 (99%), Positives = 426/426 (100%), Gaps = 0/426 (0%) Query 30 VVALGIIAAVTLLQLLIANSDMTGAWGAIASMWLGVHLVPISIGGRALGVMPLLPVLLMV 89 +VALGIIAAVTLLQLLIANSDMTGAWGAIASMWLGVHLVPISIGGRALGVMPLLPVLLMV Sbjct 1 MVALGIIAAVTLLQLLIANSDMTGAWGAIASMWLGVHLVPISIGGRALGVMPLLPVLLMV 60 Query 90 WATARSTARATSPQSSGLVVRWVVASALGGPLLMAAIALAVIHDASSVVTELQTPSALRA 149 WATARSTARATSPQSSGLVVRWVVASALGGPLLMAAIALAVIHDASSVVTELQTPSALRA Sbjct 61 WATARSTARATSPQSSGLVVRWVVASALGGPLLMAAIALAVIHDASSVVTELQTPSALRA 120 Query 150 FTSVLVVHSVGAATGVWSRVGRRALAATALPDWLHDSMRAAAAGVLALLGLSGVVTAGSL 209 FTSVLVVHSVGAATGVWSRVGRRALAATALPDWLHDSMRAAAAGVLALLGLSGVVTAGSL Sbjct 121 FTSVLVVHSVGAATGVWSRVGRRALAATALPDWLHDSMRAAAAGVLALLGLSGVVTAGSL 180 Query 210 VVHWATMQELYGITDSIFGQFSLTVLSVLYAPNVIVGTSAIAVGSSAHIGFATFSSFAVL 269 VVHWATMQELYGITDSIFGQFSLTVLSVLYAPNVIVGTSAIAVGSSAHIGFATFSSFAVL Sbjct 181 VVHWATMQELYGITDSIFGQFSLTVLSVLYAPNVIVGTSAIAVGSSAHIGFATFSSFAVL 240 Query 270 GGDIPALPILAAAPTPPLGPAWVALLIVGASSGVAVGQQCARRALPFVAAMAKLLVAAVA 329 GGDIPALPILAAAPTPPLGPAWVALLIVGASSGVAVGQQCARRALPFVAAMAKLLVAAVA Sbjct 241 GGDIPALPILAAAPTPPLGPAWVALLIVGASSGVAVGQQCARRALPFVAAMAKLLVAAVA 300 Query 330 GALVMAVLGYGGGGRLGNFGDVGVDEGALVLGVLFWFTFVGWVTVVIAGGISRRPKRLRP 389 GALVMAVLGYGGGGRLGNFGDVGVDEGALVLGVLFWFTFVGWVTVVIAGGISRRPKRLRP Sbjct 301 GALVMAVLGYGGGGRLGNFGDVGVDEGALVLGVLFWFTFVGWVTVVIAGGISRRPKRLRP 360 Query 390 APPVELDADESSPPVDMFDGAASEQPPASVAEDVPPSHDDIANGLKAPTADDEALPLSDE 449 APPVELDADESSPPVDMFDGAASEQPPASVAEDVPPSHDDIANGLKAPTADDEALPLSDE Sbjct 361 APPVELDADESSPPVDMFDGAASEQPPASVAEDVPPSHDDIANGLKAPTADDEALPLSDE 420 Query 450 PPPRAD 455 PPPRAD Sbjct 421 PPPRAD 426 >gi|308231678|ref|ZP_07413422.2| hypothetical protein TMAG_00890 [Mycobacterium tuberculosis SUMu001] gi|308370545|ref|ZP_07421956.2| conserved membrane protein [Mycobacterium tuberculosis SUMu003] gi|308374143|ref|ZP_07435036.2| hypothetical protein TMFG_02767 [Mycobacterium tuberculosis SUMu006] 9 more sequence titles Length=425 Score = 809 bits (2089), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/425 (99%), Positives = 425/425 (100%), Gaps = 0/425 (0%) Query 31 VALGIIAAVTLLQLLIANSDMTGAWGAIASMWLGVHLVPISIGGRALGVMPLLPVLLMVW 90 +ALGIIAAVTLLQLLIANSDMTGAWGAIASMWLGVHLVPISIGGRALGVMPLLPVLLMVW Sbjct 1 MALGIIAAVTLLQLLIANSDMTGAWGAIASMWLGVHLVPISIGGRALGVMPLLPVLLMVW 60 Query 91 ATARSTARATSPQSSGLVVRWVVASALGGPLLMAAIALAVIHDASSVVTELQTPSALRAF 150 ATARSTARATSPQSSGLVVRWVVASALGGPLLMAAIALAVIHDASSVVTELQTPSALRAF Sbjct 61 ATARSTARATSPQSSGLVVRWVVASALGGPLLMAAIALAVIHDASSVVTELQTPSALRAF 120 Query 151 TSVLVVHSVGAATGVWSRVGRRALAATALPDWLHDSMRAAAAGVLALLGLSGVVTAGSLV 210 TSVLVVHSVGAATGVWSRVGRRALAATALPDWLHDSMRAAAAGVLALLGLSGVVTAGSLV Sbjct 121 TSVLVVHSVGAATGVWSRVGRRALAATALPDWLHDSMRAAAAGVLALLGLSGVVTAGSLV 180 Query 211 VHWATMQELYGITDSIFGQFSLTVLSVLYAPNVIVGTSAIAVGSSAHIGFATFSSFAVLG 270 VHWATMQELYGITDSIFGQFSLTVLSVLYAPNVIVGTSAIAVGSSAHIGFATFSSFAVLG Sbjct 181 VHWATMQELYGITDSIFGQFSLTVLSVLYAPNVIVGTSAIAVGSSAHIGFATFSSFAVLG 240 Query 271 GDIPALPILAAAPTPPLGPAWVALLIVGASSGVAVGQQCARRALPFVAAMAKLLVAAVAG 330 GDIPALPILAAAPTPPLGPAWVALLIVGASSGVAVGQQCARRALPFVAAMAKLLVAAVAG Sbjct 241 GDIPALPILAAAPTPPLGPAWVALLIVGASSGVAVGQQCARRALPFVAAMAKLLVAAVAG 300 Query 331 ALVMAVLGYGGGGRLGNFGDVGVDEGALVLGVLFWFTFVGWVTVVIAGGISRRPKRLRPA 390 ALVMAVLGYGGGGRLGNFGDVGVDEGALVLGVLFWFTFVGWVTVVIAGGISRRPKRLRPA Sbjct 301 ALVMAVLGYGGGGRLGNFGDVGVDEGALVLGVLFWFTFVGWVTVVIAGGISRRPKRLRPA 360 Query 391 PPVELDADESSPPVDMFDGAASEQPPASVAEDVPPSHDDIANGLKAPTADDEALPLSDEP 450 PPVELDADESSPPVDMFDGAASEQPPASVAEDVPPSHDDIANGLKAPTADDEALPLSDEP Sbjct 361 PPVELDADESSPPVDMFDGAASEQPPASVAEDVPPSHDDIANGLKAPTADDEALPLSDEP 420 Query 451 PPRAD 455 PPRAD Sbjct 421 PPRAD 425 >gi|240169367|ref|ZP_04748026.1| integral membrane protein [Mycobacterium kansasii ATCC 12478] Length=446 Score = 580 bits (1494), Expect = 2e-163, Method: Compositional matrix adjust. Identities = 337/449 (76%), Positives = 373/449 (84%), Gaps = 7/449 (1%) Query 7 SADDRAAGARPARDLVRVAFGPGVVALGIIAAVTLLQLLIANSDMTGAWGAIASMWLGVH 66 + D+RAAGAR ARDLV+VAF P VVAL IIAAVTLLQLLIANSDMTGA GAIASMWLGVH Sbjct 5 NEDNRAAGARQARDLVKVAFAPAVVALVIIAAVTLLQLLIANSDMTGALGAIASMWLGVH 64 Query 67 LVPISIGGRALGVMPLLPVLLMVWATARSTARATSPQSSGLVVRWVVASALGGPLLMAAI 126 VPISIGGR LGVMPLLPVLLMVW TAR+TA ATSP SS LVVRWVVASALGGPLL+AAI Sbjct 65 QVPISIGGRELGVMPLLPVLLMVWGTARTTALATSPYSSWLVVRWVVASALGGPLLIAAI 124 Query 127 ALAVIHDASSVVTELQTPSALRAFTSVLVVHSVGAATGVWSRVGRRALAATALPDWLHDS 186 ALAVIHDASSV+TELQTPSALRAFT VLVVH++GAA GVWSRVGRRALAA+ LP+WL DS Sbjct 125 ALAVIHDASSVITELQTPSALRAFTGVLVVHAIGAAIGVWSRVGRRALAASPLPNWLGDS 184 Query 187 MRAAAAGVLALLGLSGVVTAGSLVVHWATMQELYGITDSIFGQFSLTVLSVLYAPNVIVG 246 +RAAA GVLALLGLSG+VTAGSLVVHWATMQELYGITDSI+GQF+LTVLSVLYAPNV VG Sbjct 185 VRAAAGGVLALLGLSGLVTAGSLVVHWATMQELYGITDSIWGQFNLTVLSVLYAPNVFVG 244 Query 247 TSAIAVGSSAHIGFATFSSFAVLGGDIPALPILAAAPTPPLGPAWVALLIVGASSGVAVG 306 +A+AVGSSAHIGFATFSSF V GGDIPA+PILAA PTPPLGPAWVALLI+GA+SGVA+G Sbjct 245 AAAVAVGSSAHIGFATFSSFTVFGGDIPAVPILAAVPTPPLGPAWVALLIIGAASGVALG 304 Query 307 QQCARRALPFVAAMAKLLVAAVAGALVMAVLGYGGGGRLGNFGDVGVDEGALVLGVLFWF 366 QQCARR LP + AMAK+LVAA+ GAL MA+LGY GGGRLGNFG VGVDEGAL++GV FWF Sbjct 305 QQCARRPLPLLPAMAKVLVAALIGALAMALLGYAGGGRLGNFGAVGVDEGALLIGVFFWF 364 Query 367 TFVGWVTVVIAGGISRRPKRLRPAPPVELDADESSPPVDMFDGAASEQPPASVAEDVPPS 426 T VG +TV +AGGI+RRP+ +P ADE+ P FD +QP V E P Sbjct 365 TVVGSLTVAMAGGITRRPRSPKPR--PAPPADEAETPAVAFD--EGDQPHDVVDEPSQPE 420 Query 427 HDDIANGLKAPTADDEALPLSDEPPPRAD 455 D+ +G + EA SD P R D Sbjct 421 DVDV-SGDDGVSLTGEA--ESDSAPQRED 446 >gi|118462881|ref|YP_880333.1| hypothetical protein MAV_1079 [Mycobacterium avium 104] gi|118164168|gb|ABK65065.1| conserved hypothetical protein [Mycobacterium avium 104] Length=463 Score = 564 bits (1454), Expect = 1e-158, Method: Compositional matrix adjust. Identities = 310/380 (82%), Positives = 341/380 (90%), Gaps = 0/380 (0%) Query 9 DDRAAGARPARDLVRVAFGPGVVALGIIAAVTLLQLLIANSDMTGAWGAIASMWLGVHLV 68 D+RAAGAR ARDLVRVAF P VVAL IIAAVTL+QLLIANSDMTGA GAIASMWLGVH V Sbjct 3 DNRAAGARQARDLVRVAFAPAVVALVIIAAVTLIQLLIANSDMTGALGAIASMWLGVHQV 62 Query 69 PISIGGRALGVMPLLPVLLMVWATARSTARATSPQSSGLVVRWVVASALGGPLLMAAIAL 128 P+SIGGR LGV+PLLPVLLMVWATAR+TARATSP SS LV+RWVVASALGGPLLM A+AL Sbjct 63 PVSIGGRELGVLPLLPVLLMVWATARNTARATSPHSSWLVIRWVVASALGGPLLMTAVAL 122 Query 129 AVIHDASSVVTELQTPSALRAFTSVLVVHSVGAATGVWSRVGRRALAATALPDWLHDSMR 188 AVIHDASSV+TELQTPSALRAF SVLVVH++GA GVWS+VG RALAA++LP WL DS+R Sbjct 123 AVIHDASSVITELQTPSALRAFLSVLVVHAIGAGIGVWSQVGPRALAASSLPYWLGDSLR 182 Query 189 AAAAGVLALLGLSGVVTAGSLVVHWATMQELYGITDSIFGQFSLTVLSVLYAPNVIVGTS 248 AA AGVLALLGLSG VTAGSLVVHWATMQELYGITDSIFG+FSLTVLS+LYAPNVIVGT+ Sbjct 183 AATAGVLALLGLSGFVTAGSLVVHWATMQELYGITDSIFGEFSLTVLSMLYAPNVIVGTA 242 Query 249 AIAVGSSAHIGFATFSSFAVLGGDIPALPILAAAPTPPLGPAWVALLIVGASSGVAVGQQ 308 A+AVGSSAHIGFATFSSF V GGDIPALP+LAA P PPLGP WVALLI+GASSGVAVGQQ Sbjct 243 AVAVGSSAHIGFATFSSFTVFGGDIPALPVLAAVPRPPLGPVWVALLIIGASSGVAVGQQ 302 Query 309 CARRALPFVAAMAKLLVAAVAGALVMAVLGYGGGGRLGNFGDVGVDEGALVLGVLFWFTF 368 CARR LP VAAM KLL A+VAGALVM++L Y G G+LGNFG VGVD+GAL++GV FWF Sbjct 303 CARRPLPPVAAMVKLLAASVAGALVMSLLAYAGSGQLGNFGHVGVDQGALLVGVFFWFAV 362 Query 369 VGWVTVVIAGGISRRPKRLR 388 VG TVV++GGI R +RL+ Sbjct 363 VGGATVVMSGGIRRPTRRLK 382 >gi|254773959|ref|ZP_05215475.1| hypothetical protein MaviaA2_04694 [Mycobacterium avium subsp. avium ATCC 25291] Length=469 Score = 564 bits (1453), Expect = 1e-158, Method: Compositional matrix adjust. Identities = 308/380 (82%), Positives = 341/380 (90%), Gaps = 0/380 (0%) Query 9 DDRAAGARPARDLVRVAFGPGVVALGIIAAVTLLQLLIANSDMTGAWGAIASMWLGVHLV 68 D+RAAGAR ARDLVRVAF P VVAL IIAAVTL+QLLIANSDMTGA GAIASMWLGVH V Sbjct 3 DNRAAGARQARDLVRVAFAPAVVALVIIAAVTLIQLLIANSDMTGALGAIASMWLGVHQV 62 Query 69 PISIGGRALGVMPLLPVLLMVWATARSTARATSPQSSGLVVRWVVASALGGPLLMAAIAL 128 P+SIGGR LGV+PLLPVLLMVWATAR+TARATSP SS LV+RWVVASALGGPLLM A+AL Sbjct 63 PVSIGGRELGVLPLLPVLLMVWATARNTARATSPHSSWLVIRWVVASALGGPLLMTAVAL 122 Query 129 AVIHDASSVVTELQTPSALRAFTSVLVVHSVGAATGVWSRVGRRALAATALPDWLHDSMR 188 AVIHDASSV+TELQTPSALRAF SVL+VH++GA GVWS+VG RALAA++LP WL DS+R Sbjct 123 AVIHDASSVITELQTPSALRAFLSVLLVHAIGAGIGVWSQVGPRALAASSLPYWLGDSLR 182 Query 189 AAAAGVLALLGLSGVVTAGSLVVHWATMQELYGITDSIFGQFSLTVLSVLYAPNVIVGTS 248 AA AGVLALLGLSG VTAGSLVVHWATMQELYGITDSIFG+FSLTVLS+LYAPNVIVGT+ Sbjct 183 AATAGVLALLGLSGFVTAGSLVVHWATMQELYGITDSIFGEFSLTVLSMLYAPNVIVGTA 242 Query 249 AIAVGSSAHIGFATFSSFAVLGGDIPALPILAAAPTPPLGPAWVALLIVGASSGVAVGQQ 308 A+AVGSSAHIGFATFSSF V GGDIPALP+LAA P PPLGP WVALLI+GASSGVAVGQQ Sbjct 243 AVAVGSSAHIGFATFSSFTVFGGDIPALPVLAAVPRPPLGPVWVALLIIGASSGVAVGQQ 302 Query 309 CARRALPFVAAMAKLLVAAVAGALVMAVLGYGGGGRLGNFGDVGVDEGALVLGVLFWFTF 368 CARR LP VAAM KLL A+VAGA+VM++L Y G G+LGNFG VGVD+GAL++GV FWF Sbjct 303 CARRPLPPVAAMVKLLAASVAGAMVMSLLAYAGSGQLGNFGHVGVDQGALLVGVFFWFAV 362 Query 369 VGWVTVVIAGGISRRPKRLR 388 VG TVV++GGI R +RL+ Sbjct 363 VGGATVVMSGGIRRPTRRLK 382 >gi|336461425|gb|EGO40296.1| hypothetical protein MAPs_31660 [Mycobacterium avium subsp. paratuberculosis S397] Length=463 Score = 561 bits (1446), Expect = 9e-158, Method: Compositional matrix adjust. Identities = 309/380 (82%), Positives = 341/380 (90%), Gaps = 0/380 (0%) Query 9 DDRAAGARPARDLVRVAFGPGVVALGIIAAVTLLQLLIANSDMTGAWGAIASMWLGVHLV 68 D+RAAGAR ARDLVRVAF P VVAL IIAAVTL+QLLIANSDMTGA GAIASMWLGVH V Sbjct 3 DNRAAGARQARDLVRVAFAPAVVALVIIAAVTLIQLLIANSDMTGALGAIASMWLGVHQV 62 Query 69 PISIGGRALGVMPLLPVLLMVWATARSTARATSPQSSGLVVRWVVASALGGPLLMAAIAL 128 P+SIGGR LGV+PLLPVLLMVWATAR+TARATSP SS LV+RWVVASALGGPLLM A+AL Sbjct 63 PVSIGGRELGVLPLLPVLLMVWATARNTARATSPHSSWLVIRWVVASALGGPLLMTAVAL 122 Query 129 AVIHDASSVVTELQTPSALRAFTSVLVVHSVGAATGVWSRVGRRALAATALPDWLHDSMR 188 AVIHDASSV+TELQTPSALRAF SVLVVH++GA GVWS+VG RALAA++LP WL DS+R Sbjct 123 AVIHDASSVITELQTPSALRAFLSVLVVHAIGAGIGVWSQVGPRALAASSLPYWLGDSLR 182 Query 189 AAAAGVLALLGLSGVVTAGSLVVHWATMQELYGITDSIFGQFSLTVLSVLYAPNVIVGTS 248 AA AGVLALLGLSG VTAGSLVVHWATMQELYGITDSIFG+FSLTVLS+LYAPNVIVGT+ Sbjct 183 AATAGVLALLGLSGFVTAGSLVVHWATMQELYGITDSIFGEFSLTVLSMLYAPNVIVGTA 242 Query 249 AIAVGSSAHIGFATFSSFAVLGGDIPALPILAAAPTPPLGPAWVALLIVGASSGVAVGQQ 308 A+AVGSSAHIGFATFSSF V GGDIPALP+LAA P PPLGP WVALLI+GASSGVAVGQQ Sbjct 243 AVAVGSSAHIGFATFSSFTVFGGDIPALPVLAAVPRPPLGPVWVALLIIGASSGVAVGQQ 302 Query 309 CARRALPFVAAMAKLLVAAVAGALVMAVLGYGGGGRLGNFGDVGVDEGALVLGVLFWFTF 368 CARR LP VAAM KLL A+VAGALVM++L + G G+LGNFG VGVD+GAL++GV FWF Sbjct 303 CARRPLPPVAAMVKLLAASVAGALVMSLLAFAGSGQLGNFGPVGVDQGALLVGVFFWFAV 362 Query 369 VGWVTVVIAGGISRRPKRLR 388 VG TVV++GGI R +RL+ Sbjct 363 VGGATVVMSGGIRRPTRRLK 382 >gi|41406999|ref|NP_959835.1| hypothetical protein MAP0901 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395350|gb|AAS03218.1| hypothetical protein MAP_0901 [Mycobacterium avium subsp. paratuberculosis K-10] Length=466 Score = 561 bits (1445), Expect = 1e-157, Method: Compositional matrix adjust. Identities = 309/380 (82%), Positives = 341/380 (90%), Gaps = 0/380 (0%) Query 9 DDRAAGARPARDLVRVAFGPGVVALGIIAAVTLLQLLIANSDMTGAWGAIASMWLGVHLV 68 D+RAAGAR ARDLVRVAF P VVAL IIAAVTL+QLLIANSDMTGA GAIASMWLGVH V Sbjct 6 DNRAAGARQARDLVRVAFAPAVVALVIIAAVTLIQLLIANSDMTGALGAIASMWLGVHQV 65 Query 69 PISIGGRALGVMPLLPVLLMVWATARSTARATSPQSSGLVVRWVVASALGGPLLMAAIAL 128 P+SIGGR LGV+PLLPVLLMVWATAR+TARATSP SS LV+RWVVASALGGPLLM A+AL Sbjct 66 PVSIGGRELGVLPLLPVLLMVWATARNTARATSPHSSWLVIRWVVASALGGPLLMTAVAL 125 Query 129 AVIHDASSVVTELQTPSALRAFTSVLVVHSVGAATGVWSRVGRRALAATALPDWLHDSMR 188 AVIHDASSV+TELQTPSALRAF SVLVVH++GA GVWS+VG RALAA++LP WL DS+R Sbjct 126 AVIHDASSVITELQTPSALRAFLSVLVVHAIGAGIGVWSQVGPRALAASSLPYWLGDSLR 185 Query 189 AAAAGVLALLGLSGVVTAGSLVVHWATMQELYGITDSIFGQFSLTVLSVLYAPNVIVGTS 248 AA AGVLALLGLSG VTAGSLVVHWATMQELYGITDSIFG+FSLTVLS+LYAPNVIVGT+ Sbjct 186 AATAGVLALLGLSGFVTAGSLVVHWATMQELYGITDSIFGEFSLTVLSMLYAPNVIVGTA 245 Query 249 AIAVGSSAHIGFATFSSFAVLGGDIPALPILAAAPTPPLGPAWVALLIVGASSGVAVGQQ 308 A+AVGSSAHIGFATFSSF V GGDIPALP+LAA P PPLGP WVALLI+GASSGVAVGQQ Sbjct 246 AVAVGSSAHIGFATFSSFTVFGGDIPALPVLAAVPRPPLGPVWVALLIIGASSGVAVGQQ 305 Query 309 CARRALPFVAAMAKLLVAAVAGALVMAVLGYGGGGRLGNFGDVGVDEGALVLGVLFWFTF 368 CARR LP VAAM KLL A+VAGALVM++L + G G+LGNFG VGVD+GAL++GV FWF Sbjct 306 CARRPLPPVAAMVKLLAASVAGALVMSLLAFAGSGQLGNFGPVGVDQGALLVGVFFWFAV 365 Query 369 VGWVTVVIAGGISRRPKRLR 388 VG TVV++GGI R +RL+ Sbjct 366 VGGATVVMSGGIRRPTRRLK 385 >gi|296169716|ref|ZP_06851333.1| integral membrane protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895613|gb|EFG75310.1| integral membrane protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=450 Score = 547 bits (1409), Expect = 2e-153, Method: Compositional matrix adjust. Identities = 330/442 (75%), Positives = 372/442 (85%), Gaps = 1/442 (0%) Query 14 GARPARDLVRVAFGPGVVALGIIAAVTLLQLLIANSDMTGAWGAIASMWLGVHLVPISIG 73 GAR ARDLVRVAFGP VVAL IIAAV LLQLLIANSDMTGA GAIASMWLGVH VPISIG Sbjct 2 GARQARDLVRVAFGPAVVALVIIAAVALLQLLIANSDMTGALGAIASMWLGVHQVPISIG 61 Query 74 GRALGVMPLLPVLLMVWATARSTARATSPQSSGLVVRWVVASALGGPLLMAAIALAVIHD 133 GR LGV+PLLPVLLM+WATARSTARATSP SS LVVRWVVASALGGPLL+AAIALAVIHD Sbjct 62 GRELGVLPLLPVLLMIWATARSTARATSPYSSWLVVRWVVASALGGPLLIAAIALAVIHD 121 Query 134 ASSVVTELQTPSALRAFTSVLVVHSVGAATGVWSRVGRRALAATALPDWLHDSMRAAAAG 193 ASSV+TELQTPSALRAF SVLVVH+VGAA GV SRVGRRALA ++LP W+ D++RAA+AG Sbjct 122 ASSVITELQTPSALRAFASVLVVHAVGAAIGVGSRVGRRALAVSSLPFWVGDALRAASAG 181 Query 194 VLALLGLSGVVTAGSLVVHWATMQELYGITDSIFGQFSLTVLSVLYAPNVIVGTSAIAVG 253 VLALLGLSG+VTA SLVVHWATMQ+LYGIT+SIFGQFSLTVLS+LYAPNVIVGTSA+AVG Sbjct 182 VLALLGLSGLVTAASLVVHWATMQDLYGITESIFGQFSLTVLSMLYAPNVIVGTSAMAVG 241 Query 254 SSAHIGFATFSSFAVLGGDIPALPILAAAPTPPLGPAWVALLIVGASSGVAVGQQCARRA 313 SSAH+GFATFSSF V GGDIP+LPILAAAP PPLGP WVALLI+GASSGVAVGQQCARR Sbjct 242 SSAHLGFATFSSFTVFGGDIPSLPILAAAPRPPLGPVWVALLIIGASSGVAVGQQCARRP 301 Query 314 LPFVAAMAKLLVAAVAGALVMAVLGYGGGGRLGNFGDVGVDEGALVLGVLFWFTFVGWVT 373 LP + A+AKLLVAAVAGAL M++L YGG GRLGNFGDVGVD+GAL++GV FWF+ VG +T Sbjct 302 LPPIPALAKLLVAAVAGALAMSLLAYGGSGRLGNFGDVGVDQGALLIGVFFWFSVVGGIT 361 Query 374 VVIAGGISRRPKRLRPAPPVELDADESSPPVDM-FDGAASEQPPASVAEDVPPSHDDIAN 432 VV++GG+ RP+R +PAP + + + D G+ E P + +D HD + + Sbjct 362 VVMSGGVRARPRRPKPAPAAAEEPADFAGAFDEPVGGSDDELPIDAFDDDRLAGHDALLS 421 Query 433 GLKAPTADDEALPLSDEPPPRA 454 AP DDE +P DE P A Sbjct 422 DDDAPVGDDEGVPPPDEAGPTA 443 >gi|254823463|ref|ZP_05228464.1| hypothetical protein MintA_26271 [Mycobacterium intracellulare ATCC 13950] Length=471 Score = 525 bits (1351), Expect = 9e-147, Method: Compositional matrix adjust. Identities = 304/385 (79%), Positives = 336/385 (88%), Gaps = 0/385 (0%) Query 30 VVALGIIAAVTLLQLLIANSDMTGAWGAIASMWLGVHLVPISIGGRALGVMPLLPVLLMV 89 +VAL IIAAVTL+QLLIANSDMTGA GAIASMWLGVH VPISIGGR LGVMPLLPVLLMV Sbjct 1 MVALVIIAAVTLIQLLIANSDMTGALGAIASMWLGVHQVPISIGGRELGVMPLLPVLLMV 60 Query 90 WATARSTARATSPQSSGLVVRWVVASALGGPLLMAAIALAVIHDASSVVTELQTPSALRA 149 WATARSTARATSP SS LVVRWVVASALGGPLLM AIALAVIHDASSV+TELQTPSALRA Sbjct 61 WATARSTARATSPHSSWLVVRWVVASALGGPLLMTAIALAVIHDASSVITELQTPSALRA 120 Query 150 FTSVLVVHSVGAATGVWSRVGRRALAATALPDWLHDSMRAAAAGVLALLGLSGVVTAGSL 209 F SVLVVH+ GA GVWSRVG R LA ++LP WL DS+RAA+AG+LALLGLSG VTAGSL Sbjct 121 FLSVLVVHAAGAGIGVWSRVGPRVLAVSSLPYWLGDSLRAASAGLLALLGLSGFVTAGSL 180 Query 210 VVHWATMQELYGITDSIFGQFSLTVLSVLYAPNVIVGTSAIAVGSSAHIGFATFSSFAVL 269 VVHWATMQELYGITDSIFG+FSLT+LS+LYAPNVIVGT+A+AVGSSAHIGFATFSSF V Sbjct 181 VVHWATMQELYGITDSIFGEFSLTLLSMLYAPNVIVGTAAVAVGSSAHIGFATFSSFTVF 240 Query 270 GGDIPALPILAAAPTPPLGPAWVALLIVGASSGVAVGQQCARRALPFVAAMAKLLVAAVA 329 GGDIPALP+LAA P PPLGP WVALLI+GASSGVAVGQQCARRALP AAM KLLVA+ A Sbjct 241 GGDIPALPVLAAVPRPPLGPVWVALLIIGASSGVAVGQQCARRALPPAAAMVKLLVASAA 300 Query 330 GALVMAVLGYGGGGRLGNFGDVGVDEGALVLGVLFWFTFVGWVTVVIAGGISRRPKRLRP 389 GALVM++L Y G G+LGNFG VGVD+GAL+LGV FWFT +G +TVV++GGI RP+RLR Sbjct 301 GALVMSLLAYAGSGQLGNFGHVGVDQGALLLGVFFWFTVIGGITVVLSGGIRPRPRRLRA 360 Query 390 APPVELDADESSPPVDMFDGAASEQ 414 P A+E + D+FD +E+ Sbjct 361 KPASAAPAEEPADFTDVFDDRVAEE 385 >gi|342860565|ref|ZP_08717216.1| hypothetical protein MCOL_16861 [Mycobacterium colombiense CECT 3035] gi|342132220|gb|EGT85461.1| hypothetical protein MCOL_16861 [Mycobacterium colombiense CECT 3035] Length=469 Score = 521 bits (1341), Expect = 1e-145, Method: Compositional matrix adjust. Identities = 306/372 (83%), Positives = 337/372 (91%), Gaps = 0/372 (0%) Query 9 DDRAAGARPARDLVRVAFGPGVVALGIIAAVTLLQLLIANSDMTGAWGAIASMWLGVHLV 68 D+RAAGAR ARDLVRVAF P VVAL IIAAVTL+QLLIANSDMTGA GAIASMWLGVH V Sbjct 3 DNRAAGARQARDLVRVAFAPAVVALVIIAAVTLIQLLIANSDMTGALGAIASMWLGVHQV 62 Query 69 PISIGGRALGVMPLLPVLLMVWATARSTARATSPQSSGLVVRWVVASALGGPLLMAAIAL 128 P+SIGGR LGVMPLLPVLLM+WATARSTARAT+P SS LVVRWVVASALGGPLLMAAIAL Sbjct 63 PVSIGGRELGVMPLLPVLLMIWATARSTARATTPHSSWLVVRWVVASALGGPLLMAAIAL 122 Query 129 AVIHDASSVVTELQTPSALRAFTSVLVVHSVGAATGVWSRVGRRALAATALPDWLHDSMR 188 A+IHDASSV+TELQTPSALRAF SVLVVH+ GA GVWSRVG RALAA +LP WL DS+R Sbjct 123 AIIHDASSVITELQTPSALRAFLSVLVVHAAGAGIGVWSRVGPRALAAASLPFWLVDSVR 182 Query 189 AAAAGVLALLGLSGVVTAGSLVVHWATMQELYGITDSIFGQFSLTVLSVLYAPNVIVGTS 248 AA+AG+LALLGLSG+V AGSLVVHW+TMQELYGITDSIFG+FSLT+LS+LYAPNVIVGT+ Sbjct 183 AASAGLLALLGLSGLVAAGSLVVHWSTMQELYGITDSIFGEFSLTLLSMLYAPNVIVGTA 242 Query 249 AIAVGSSAHIGFATFSSFAVLGGDIPALPILAAAPTPPLGPAWVALLIVGASSGVAVGQQ 308 A+AVGSSAHIGFATFSSF V GGDIPALP+LAA P PPLGP WVALLI+GA+SGVAVGQQ Sbjct 243 AMAVGSSAHIGFATFSSFTVFGGDIPALPVLAAVPRPPLGPVWVALLIIGAASGVAVGQQ 302 Query 309 CARRALPFVAAMAKLLVAAVAGALVMAVLGYGGGGRLGNFGDVGVDEGALVLGVLFWFTF 368 CARRALP +AA AKLLVAAV GALVM++L Y G G+LGNFG VGVD+GAL++GV FWF Sbjct 303 CARRALPLLAAAAKLLVAAVGGALVMSLLAYAGSGQLGNFGHVGVDQGALLVGVFFWFAV 362 Query 369 VGWVTVVIAGGI 380 VG +TVV+ GGI Sbjct 363 VGGITVVMTGGI 374 >gi|15826981|ref|NP_301244.1| hypothetical protein ML0159 [Mycobacterium leprae TN] gi|221229459|ref|YP_002502875.1| hypothetical protein MLBr_00159 [Mycobacterium leprae Br4923] gi|4455694|emb|CAB36669.1| hypothetical protein MLCB373.07 [Mycobacterium leprae] gi|13092528|emb|CAC29667.1| putative membrane protein [Mycobacterium leprae] gi|219932566|emb|CAR70252.1| putative membrane protein [Mycobacterium leprae Br4923] Length=430 Score = 512 bits (1318), Expect = 5e-143, Method: Compositional matrix adjust. Identities = 318/420 (76%), Positives = 352/420 (84%), Gaps = 2/420 (0%) Query 9 DDRAAGARPARDLVRVAFGPGVVALGIIAAVTLLQLLIANSDMTGAWGAIASMWLGVHLV 68 D+RAAG R ARDLV+VAFGP VVAL IIAA+TLLQLLIANSDMTGA GAIASMWLGVH V Sbjct 3 DNRAAGVRQARDLVKVAFGPAVVALAIIAAITLLQLLIANSDMTGALGAIASMWLGVHQV 62 Query 69 PISIGGRALGVMPLLPVLLMVWATARSTARATSPQSSGLVVRWVVASALGGPLLMAAIAL 128 PI+IGGR L +MPLLPVLLMVWATA ST++ATS SS LV+RWVVASALGGPLL+AAI+L Sbjct 63 PIAIGGRELSIMPLLPVLLMVWATAHSTSQATSAYSSWLVIRWVVASALGGPLLIAAISL 122 Query 129 AVIHDASSVVTELQTPSALRAFTSVLVVHSVGAATGVWSRVGRRALAATALPDWLHDSMR 188 AVIHDASSV+TELQTP ALRAFT VLVVH++GAA GV SRVGRR L A+ LPDW+ DS+ Sbjct 123 AVIHDASSVLTELQTPKALRAFTGVLVVHAIGAAIGVNSRVGRRVLTASRLPDWVGDSVH 182 Query 189 AAAAGVLALLGLSGVVTAGSLVVHWATMQELYGITDSIFGQFSLTVLSVLYAPNVIVGTS 248 AA AGVLALLGLSG+VTAGSLVVHWATMQE YGITDSIFGQFSLTVLSVLYAPNVIVGTS Sbjct 183 AATAGVLALLGLSGLVTAGSLVVHWATMQEFYGITDSIFGQFSLTVLSVLYAPNVIVGTS 242 Query 249 AIAVGSSAHIGFATFSSFAVLGGDIPALPILAAAPTPPLGPAWVALLIVGASSGVAVGQQ 308 A+AVGSSAH+GFATFSSF V GGDIPALP+LAAAPTPPL P WVALLIVGA+SGVAVGQQ Sbjct 243 AVAVGSSAHLGFATFSSFTVFGGDIPALPVLAAAPTPPLAPVWVALLIVGAASGVAVGQQ 302 Query 309 CARRALPFVAAMAKLLVAAVAGALVMAVLGYGGGGRLGNFGDVGVDEGALVLGVLFWFTF 368 C R LP +AA+AKLLVAA GAL+MA+LGY G GRLGNFGD+ VD+GALV+GV FWF Sbjct 303 CTRHPLPLLAALAKLLVAAATGALMMALLGYAGSGRLGNFGDIDVDQGALVVGVFFWFAV 362 Query 369 VGWVTVVIAGGISRRPKRLRPAPPV--ELDADESSPPVDMFDGAASEQPPASVAEDVPPS 426 VGWVTVV+A GI R P+ L+P P + E AD SS + + G P ED P Sbjct 363 VGWVTVVVACGIKRFPRHLKPPPALSSEEHADASSKDHEAYFGVDLNVPFDLSGEDEIPK 422 >gi|183984514|ref|YP_001852805.1| integral membrane protein [Mycobacterium marinum M] gi|183177840|gb|ACC42950.1| conserved integral membrane protein [Mycobacterium marinum M] Length=472 Score = 505 bits (1300), Expect = 7e-141, Method: Compositional matrix adjust. Identities = 328/449 (74%), Positives = 363/449 (81%), Gaps = 16/449 (3%) Query 9 DDRAAGARPARDLVRVAFGPGVVALGIIAAVTLLQLLIANSDMTGAWGAIASMWLGVHLV 68 D RAAGAR ARDLV+VAF P VVAL IIAAVTL+QL+IANSDMTGA GAIASMWLGVH V Sbjct 6 DSRAAGARQARDLVKVAFAPAVVALVIIAAVTLIQLVIANSDMTGALGAIASMWLGVHQV 65 Query 69 PISIGGRALGVMPLLPVLLMVWATARSTARATSPQSSGLVVRWVVASALGGPLLMAAIAL 128 PISIGGR LGVMPL P LLMVW TAR+TA ATSP SS LVVRWV+ASALGGPLL+AAI L Sbjct 66 PISIGGRELGVMPLFPALLMVWGTARTTALATSPYSSWLVVRWVIASALGGPLLIAAICL 125 Query 129 AVIHDASSVVTELQTPSALRAFTSVLVVHSVGAATGVWSRVGRRALAATALPDWLHDSMR 188 AVIHDASSV+TELQTPSALRAF SVL VH++GA GVWSRVGRRALA + LP+WL DS+R Sbjct 126 AVIHDASSVITELQTPSALRAFVSVLAVHAIGAGLGVWSRVGRRALAVSPLPNWLGDSLR 185 Query 189 AAAAGVLALLGLSGVVTAGSLVVHWATMQELYGITDSIFGQFSLTVLSVLYAPNVIVGTS 248 AAAAGVLALLGLSG+VTAGSLVVHWATMQELYGITDS FGQFSLTVLSVLY PNV+VG + Sbjct 186 AAAAGVLALLGLSGLVTAGSLVVHWATMQELYGITDSAFGQFSLTVLSVLYVPNVVVGAA 245 Query 249 AIAVGSSAHIGFATFSSFAVLGGDIPALPILAAAPTPPLGPAWVALLIVGASSGVAVGQQ 308 AIAVG+SAHIGFATFS+F V GGDIPA+PILAAAPTP LGP WVALLI+GASSGVAVGQQ Sbjct 246 AIAVGASAHIGFATFSAFTVFGGDIPAVPILAAAPTPLLGPVWVALLIIGASSGVAVGQQ 305 Query 309 CARRALPFVAAMAKLLVAAVAGALVMAVLGYGGGGRLGNFGDVGVDEGALVLGVLFWFTF 368 CARR LP + AM KLL AA+ GAL MA+LGYGG G+LGNFG VGVDEGAL++GV FWF Sbjct 306 CARRPLPPLPAMGKLLAAALVGALAMALLGYGGSGKLGNFGAVGVDEGALLVGVFFWFAV 365 Query 369 VGWVTVVIAGGISRRPKRLRPAPPVELDADESSP---PVD-----MFDGAA------SEQ 414 VG T+V+AGGI RRP+R +P P ++AD P PVD +FD A S + Sbjct 366 VGGATLVMAGGIRRRPRRPKPRPAPPVEADVDEPIHEPVDEPFVPLFDQDAPLGDMTSRE 425 Query 415 P--PASVAEDVPPSHDDIANGLKAPTADD 441 P P DVPP+ D A+ P D Sbjct 426 PVAPGGDDADVPPAAPDEADWSDGPDRPD 454 >gi|118619785|ref|YP_908117.1| integral membrane protein [Mycobacterium ulcerans Agy99] gi|118571895|gb|ABL06646.1| conserved integral membrane protein [Mycobacterium ulcerans Agy99] Length=463 Score = 494 bits (1272), Expect = 1e-137, Method: Compositional matrix adjust. Identities = 328/459 (72%), Positives = 365/459 (80%), Gaps = 18/459 (3%) Query 9 DDRAAGARPARDLVRVAFGPGVVALGIIAAVTLLQLLIANSDMTGAWGAIASMWLGVHLV 68 D RAAGAR ARDLV+VAF P VVAL IIAAVTL+QL+IANSDMTGA GAIASMWLGVH V Sbjct 3 DSRAAGARQARDLVKVAFAPAVVALVIIAAVTLIQLVIANSDMTGALGAIASMWLGVHQV 62 Query 69 PISIGGRALGVMPLLPVLLMVWATARSTARATSPQSSGLVVRWVVASALGGPLLMAAIAL 128 PISIGGR LGVMPL P +LMVW TAR+TA ATSP SS LVVRWV+ASALGGPLL+AAI L Sbjct 63 PISIGGRELGVMPLFPAMLMVWGTARTTALATSPYSSWLVVRWVIASALGGPLLIAAICL 122 Query 129 AVIHDASSVVTELQTPSALRAFTSVLVVHSVGAATGVWSRVGRRALAATALPDWLHDSMR 188 AVIHDASSV+TELQTP+ALRAF SVL VH++GA GVWSRVG RALA + LP+WL DS+R Sbjct 123 AVIHDASSVITELQTPNALRAFVSVLAVHAIGAGLGVWSRVGIRALAVSPLPNWLGDSLR 182 Query 189 AAAAGVLALLGLSGVVTAGSLVVHWATMQELYGITDSIFGQFSLTVLSVLYAPNVIVGTS 248 AAAAGVLALLGLSG+VTAGSLVVHWATMQELYGITDS FGQFSLTVLSVLY PNV+VG + Sbjct 183 AAAAGVLALLGLSGLVTAGSLVVHWATMQELYGITDSAFGQFSLTVLSVLYVPNVVVGAA 242 Query 249 AIAVGSSAHIGFATFSSFAVLGGDIPALPILAAAPTPPLGPAWVALLIVGASSGVAVGQQ 308 AIAVG+SAHIGFATFS+F V GGDIPA+PILAAAPTPPLGP WVALLI+GASSGVAVGQQ Sbjct 243 AIAVGASAHIGFATFSAFTVFGGDIPAVPILAAAPTPPLGPVWVALLIIGASSGVAVGQQ 302 Query 309 CARRALPFVAAMAKLLVAAVAGALVMAVLGYGGGGRLGNFGDVGVDEGALVLGVLFWFTF 368 CARR LP + AM KLL AA+ GAL MA+LGYGG G+LGNFG VGVDEGAL++GV FWF Sbjct 303 CARRPLPPLPAMGKLLAAALLGALAMALLGYGGSGKLGNFGAVGVDEGALLVGVFFWFAV 362 Query 369 VGWVTVVIAGGISRRPKRLRPAPPVELDADESSP---PVD-----MFDGAA------SEQ 414 VG T+V+AGGI RRP+R +P P +AD P PVD +FD A S + Sbjct 363 VGGATLVMAGGIRRRPRRPKPRPVPPAEADVDEPIHEPVDEPFVPLFDQDAPLDDVTSRE 422 Query 415 P--PASVAEDVPPSHDDIANGLKAPTADDEALPLSDEPP 451 P P DVPP+ D + P D P + PP Sbjct 423 PVAPGGDDADVPPAAPDEVDWSDGPDRQDG--PDTSHPP 459 >gi|15705920|gb|AAL05878.1|AF411607_2 unknown [Mycobacterium avium subsp. paratuberculosis] Length=409 Score = 482 bits (1241), Expect = 5e-134, Method: Compositional matrix adjust. Identities = 264/328 (81%), Positives = 294/328 (90%), Gaps = 0/328 (0%) Query 61 MWLGVHLVPISIGGRALGVMPLLPVLLMVWATARSTARATSPQSSGLVVRWVVASALGGP 120 MWLGVH VP+SIGGR LGV+PLLPVLLMVWATAR+TARATSP SS LV+RWVVASALGGP Sbjct 1 MWLGVHQVPVSIGGRELGVLPLLPVLLMVWATARNTARATSPHSSWLVIRWVVASALGGP 60 Query 121 LLMAAIALAVIHDASSVVTELQTPSALRAFTSVLVVHSVGAATGVWSRVGRRALAATALP 180 LLM A+ALAVIHDASSV+TELQTPSALRAF SVLVVH++GA GVWS+VG RALAA++LP Sbjct 61 LLMTAVALAVIHDASSVITELQTPSALRAFLSVLVVHAIGAGIGVWSQVGPRALAASSLP 120 Query 181 DWLHDSMRAAAAGVLALLGLSGVVTAGSLVVHWATMQELYGITDSIFGQFSLTVLSVLYA 240 WL DS+RAA AGVLALLGLSG VTAGSLVVHWATMQELYGITDSIFG+FSLTVLS+LYA Sbjct 121 YWLGDSLRAATAGVLALLGLSGFVTAGSLVVHWATMQELYGITDSIFGEFSLTVLSMLYA 180 Query 241 PNVIVGTSAIAVGSSAHIGFATFSSFAVLGGDIPALPILAAAPTPPLGPAWVALLIVGAS 300 PNVIVGT+A+AVGSSAHIGFATFSSF V GGDIPALP+LAA P PPLGP WVALLI+GAS Sbjct 181 PNVIVGTAAVAVGSSAHIGFATFSSFTVFGGDIPALPVLAAVPRPPLGPVWVALLIIGAS 240 Query 301 SGVAVGQQCARRALPFVAAMAKLLVAAVAGALVMAVLGYGGGGRLGNFGDVGVDEGALVL 360 SGVAVGQQCARR LP VAAM KLL A+VAGALVM++L + G G+LGNFG VGVD+GAL++ Sbjct 241 SGVAVGQQCARRPLPPVAAMVKLLAASVAGALVMSLLAFAGSGQLGNFGPVGVDQGALLV 300 Query 361 GVLFWFTFVGWVTVVIAGGISRRPKRLR 388 GV FWF VG TVV++GGI R +RL+ Sbjct 301 GVFFWFAVVGGATVVMSGGIRRPTRRLK 328 >gi|118473475|ref|YP_889754.1| hypothetical protein MSMEG_5517 [Mycobacterium smegmatis str. MC2 155] gi|118174762|gb|ABK75658.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length=487 Score = 475 bits (1223), Expect = 6e-132, Method: Compositional matrix adjust. Identities = 266/367 (73%), Positives = 307/367 (84%), Gaps = 0/367 (0%) Query 14 GARPARDLVRVAFGPGVVALGIIAAVTLLQLLIANSDMTGAWGAIASMWLGVHLVPISIG 73 G R AR+L+RVAFGP VVAL IIAAV LLQL+IANSDMTGA+GAIASMWLGVH VP+SIG Sbjct 7 GTRQARELLRVAFGPSVVALVIIAAVVLLQLVIANSDMTGAFGAIASMWLGVHQVPVSIG 66 Query 74 GRALGVMPLLPVLLMVWATARSTARATSPQSSGLVVRWVVASALGGPLLMAAIALAVIHD 133 GR LGVMPLLPVL MVW TA++TA AT+P SS V RWVVASALGGPLL+AA+ LAVIHD Sbjct 67 GRELGVMPLLPVLAMVWGTAKTTAAATAPNSSWFVTRWVVASALGGPLLIAALLLAVIHD 126 Query 134 ASSVVTELQTPSALRAFTSVLVVHSVGAATGVWSRVGRRALAATALPDWLHDSMRAAAAG 193 A+SV+TELQTPSALRAF VL VH++GA GV +++GRR LAA+ LP WL D++RAA+AG Sbjct 127 AASVITELQTPSALRAFGGVLAVHAIGALIGVSTKIGRRTLAASPLPKWLPDAVRAASAG 186 Query 194 VLALLGLSGVVTAGSLVVHWATMQELYGITDSIFGQFSLTVLSVLYAPNVIVGTSAIAVG 253 VLAL LSG+VTAGSLVVHW TM +L+ ITD++FGQ SLT LSVLY PNVIVGTSAIAVG Sbjct 187 VLALFALSGIVTAGSLVVHWGTMHDLFAITDTVFGQLSLTGLSVLYIPNVIVGTSAIAVG 246 Query 254 SSAHIGFATFSSFAVLGGDIPALPILAAAPTPPLGPAWVALLIVGASSGVAVGQQCARRA 313 SSAHIG ATFSSF V GGDIPA+P+LAAAPTPPLGP WVALLIVGA+S VA+GQQCA R Sbjct 247 SSAHIGLATFSSFTVFGGDIPAVPVLAAAPTPPLGPVWVALLIVGAASAVALGQQCAARP 306 Query 314 LPFVAAMAKLLVAAVAGALVMAVLGYGGGGRLGNFGDVGVDEGALVLGVLFWFTFVGWVT 373 L AA+AKL+VA++ A+ MA+LGY G GRLGNFG VGVD+ V WF +G +T Sbjct 307 LTPFAALAKLIVASLISAVTMALLGYAGSGRLGNFGHVGVDQSTFGPAVFLWFVGIGGLT 366 Query 374 VVIAGGI 380 VV++GGI Sbjct 367 VVMSGGI 373 >gi|326904820|gb|EGE51753.1| conserved membrane protein [Mycobacterium tuberculosis W-148] Length=240 Score = 470 bits (1210), Expect = 2e-130, Method: Compositional matrix adjust. Identities = 240/240 (100%), Positives = 240/240 (100%), Gaps = 0/240 (0%) Query 216 MQELYGITDSIFGQFSLTVLSVLYAPNVIVGTSAIAVGSSAHIGFATFSSFAVLGGDIPA 275 MQELYGITDSIFGQFSLTVLSVLYAPNVIVGTSAIAVGSSAHIGFATFSSFAVLGGDIPA Sbjct 1 MQELYGITDSIFGQFSLTVLSVLYAPNVIVGTSAIAVGSSAHIGFATFSSFAVLGGDIPA 60 Query 276 LPILAAAPTPPLGPAWVALLIVGASSGVAVGQQCARRALPFVAAMAKLLVAAVAGALVMA 335 LPILAAAPTPPLGPAWVALLIVGASSGVAVGQQCARRALPFVAAMAKLLVAAVAGALVMA Sbjct 61 LPILAAAPTPPLGPAWVALLIVGASSGVAVGQQCARRALPFVAAMAKLLVAAVAGALVMA 120 Query 336 VLGYGGGGRLGNFGDVGVDEGALVLGVLFWFTFVGWVTVVIAGGISRRPKRLRPAPPVEL 395 VLGYGGGGRLGNFGDVGVDEGALVLGVLFWFTFVGWVTVVIAGGISRRPKRLRPAPPVEL Sbjct 121 VLGYGGGGRLGNFGDVGVDEGALVLGVLFWFTFVGWVTVVIAGGISRRPKRLRPAPPVEL 180 Query 396 DADESSPPVDMFDGAASEQPPASVAEDVPPSHDDIANGLKAPTADDEALPLSDEPPPRAD 455 DADESSPPVDMFDGAASEQPPASVAEDVPPSHDDIANGLKAPTADDEALPLSDEPPPRAD Sbjct 181 DADESSPPVDMFDGAASEQPPASVAEDVPPSHDDIANGLKAPTADDEALPLSDEPPPRAD 240 >gi|120405808|ref|YP_955637.1| hypothetical protein Mvan_4858 [Mycobacterium vanbaalenii PYR-1] gi|119958626|gb|ABM15631.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] Length=506 Score = 457 bits (1175), Expect = 2e-126, Method: Compositional matrix adjust. Identities = 266/381 (70%), Positives = 309/381 (82%), Gaps = 2/381 (0%) Query 11 RAAGARPARDLVRVAFGPGVVALGIIAAVTLLQLLIANSDMTGAWGAIASMWLGVHLVPI 70 R G R ARDL+RVAFGP +VAL IIAAV LLQLLIANSDMTGA+GAIASMWLGVHLVP+ Sbjct 4 RPVGTRQARDLLRVAFGPSLVALVIIAAVVLLQLLIANSDMTGAFGAIASMWLGVHLVPV 63 Query 71 SIGGRALGVMPLLPVLLMVWATARSTARATSPQSSGLVVRWVVASALGGPLLMAAIALAV 130 SIGG ALGVMPLLPVL+M++ TAR+TA ATS SS V RWVVASALGGP+L+AAI LAV Sbjct 64 SIGGSALGVMPLLPVLVMIYGTARTTAAATS--SSWFVTRWVVASALGGPVLIAAICLAV 121 Query 131 IHDASSVVTELQTPSALRAFTSVLVVHSVGAATGVWSRVGRRALAATALPDWLHDSMRAA 190 IHDA+SV+T+LQTP AL AF V VH++GA GV SRVGRR L+A+ LP WL D+ RAA Sbjct 122 IHDAASVLTQLQTPDALHAFGYVFTVHAIGAVLGVGSRVGRRLLSASPLPGWLPDAFRAA 181 Query 191 AAGVLALLGLSGVVTAGSLVVHWATMQELYGITDSIFGQFSLTVLSVLYAPNVIVGTSAI 250 AAGVLAL+GLSG V AGSLVVHW+TM +L+ ITDS+FGQ SLTVLSVLY PNV+VG SA+ Sbjct 182 AAGVLALMGLSGAVVAGSLVVHWSTMHDLFSITDSMFGQLSLTVLSVLYLPNVMVGASAV 241 Query 251 AVGSSAHIGFATFSSFAVLGGDIPALPILAAAPTPPLGPAWVALLIVGASSGVAVGQQCA 310 AVGSSAHIG ATFSSF V GGDIPALP+LAA PTPPLGP WVAL+I+ A S VA+GQQCA Sbjct 242 AVGSSAHIGLATFSSFTVFGGDIPALPVLAAVPTPPLGPVWVALMIIAAVSAVALGQQCA 301 Query 311 RRALPFVAAMAKLLVAAVAGALVMAVLGYGGGGRLGNFGDVGVDEGALVLGVLFWFTFVG 370 R LP AA+AK+L AA A A MA+LG+ GGG LGNFG+VGVD+ V WF +G Sbjct 302 RHPLPMPAALAKVLTAAAAAAGAMALLGHAGGGPLGNFGNVGVDQATFAPAVFLWFFGIG 361 Query 371 WVTVVIAGGISRRPKRLRPAP 391 +TV ++GGI+ R ++ +P P Sbjct 362 ALTVAMSGGITPRVRKPKPVP 382 >gi|169628157|ref|YP_001701806.1| hypothetical protein MAB_1062 [Mycobacterium abscessus ATCC 19977] gi|169240124|emb|CAM61152.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=443 Score = 446 bits (1146), Expect = 5e-123, Method: Compositional matrix adjust. Identities = 238/383 (63%), Positives = 294/383 (77%), Gaps = 4/383 (1%) Query 18 ARDLVRVAFGPGVVALGIIAAVTLLQLLIANSDMTGAWGAIASMWLGVHLVPISIGGRAL 77 AR L+ VAFGP VAL IIAA+ L+QL+IANSDMTG +GA+ASMWLG HLVPISIGGR + Sbjct 12 ARALLTVAFGPSAVALVIIAAIVLVQLVIANSDMTGTFGAVASMWLGTHLVPISIGGRVI 71 Query 78 GVMPLLPVLLMVWATARSTARATSPQSSGLVVRWVVASALGGPLLMAAIALAVIHDASSV 137 V+PLLP MVW AR+ A A +P +S V+RWV+ASAL GPLLM AI+LA+IHDAS+V Sbjct 72 EVLPLLPTAAMVWGVARTVASALAPTTSWYVIRWVIASALAGPLLMTAISLAIIHDASTV 131 Query 138 VTELQTPSALRAFTSVLVVHSVGAATGVWSRVGRRALAATALPDWLHDSMRAAAAGVLAL 197 +T+LQ+P+ALRAF VL VH+VGA GV +RVGRR LP W D+ R A AGVLAL Sbjct 132 LTQLQSPNALRAFGCVLGVHAVGAVIGVVTRVGRRIALVLQLPSWPMDAARGAVAGVLAL 191 Query 198 LGLSGVVTAGSLVVHWATMQELYGITDSIFGQFSLTVLSVLYAPNVIVGTSAIAVGSSAH 257 GLSG VTAGSLVVHWATM +LY +T+ GQ SLT+L++LYAPNVI+G+ A+AVGSSAH Sbjct 192 FGLSGAVTAGSLVVHWATMDQLYSVTNDFVGQLSLTLLAILYAPNVILGSCALAVGSSAH 251 Query 258 IGFATFSSFAVLGGDIPALPILAAAPTPPLGPAWVALLIVGASSGVAVGQQCARRALPFV 317 +G ATFS+FAV GG +PA+PILAA PTPPLGPAWVAL+I+GA SGVAVGQQCAR +P+ Sbjct 252 VGTATFSAFAVFGGQLPAVPILAAVPTPPLGPAWVALMIIGAVSGVAVGQQCARHPVPWP 311 Query 318 AAMAKLLVAAVAGALVMAVLGYGGGGRLGNFGDVGVDEGALVLGVLFWFTFVGWVTVVIA 377 A+ K++ AA+ A +A++G GG+LGNFG +G+D+G GV FWF +G +TV + Sbjct 312 TAIHKVVTAALLAATFLAIVGKLAGGQLGNFGRLGIDQGTFGPGVFFWFLVIGLLTVFML 371 Query 378 GGISRRPKRLR----PAPPVELD 396 GG +R P R R PAP E+D Sbjct 372 GGATRLPARTRRDPEPAPEPEMD 394 >gi|126437266|ref|YP_001072957.1| hypothetical protein Mjls_4701 [Mycobacterium sp. JLS] gi|126237066|gb|ABO00467.1| conserved hypothetical protein [Mycobacterium sp. JLS] Length=472 Score = 437 bits (1124), Expect = 2e-120, Method: Compositional matrix adjust. Identities = 295/454 (65%), Positives = 338/454 (75%), Gaps = 11/454 (2%) Query 9 DDRAAGARPARDLVRVAFGPGVVALGIIAAVTLLQLLIANSDMTGAWGAIASMWLGVHLV 68 D+R G R AR+L+RVAFGP VVAL +IAAVTLLQLLIANSDMTGA+GAIASMWLGVHLV Sbjct 2 DNRPVGTRQARELLRVAFGPSVVALVVIAAVTLLQLLIANSDMTGAFGAIASMWLGVHLV 61 Query 69 PISIGGRALGVMPLLPVLLMVWATARSTARATSPQSSGLVVRWVVASALGGPLLMAAIAL 128 P+SIGG LG MPL+P L+MVW TAR+TA AT P S V RWVVASALGGPLL+AAIAL Sbjct 62 PVSIGGSELGAMPLMPALMMVWGTARTTAAATPPHGSWFVTRWVVASALGGPLLIAAIAL 121 Query 129 AVIHDASSVVTELQTPSALRAFTSVLVVHSVGAATGVWSRVGRRALAATALPDWLHDSMR 188 AVIHDA+SV+TELQTPSALRAF VLVVH +GAA GV SRVGRR + + LP+WL D+ R Sbjct 122 AVIHDAASVLTELQTPSALRAFGGVLVVHLIGAAIGVASRVGRRTVLTSPLPNWLPDAFR 181 Query 189 AAAAGVLALLGLSGVVTAGSLVVHWATMQELYGITDSIFGQFSLTVLSVLYAPNVIVGTS 248 AAAAGVLAL GL GVV AGSLVVHW+TM EL+ ITDS+FGQFSLTVLS+LY PNV+VG + Sbjct 182 AAAAGVLALAGLCGVVIAGSLVVHWSTMHELFAITDSVFGQFSLTVLSLLYLPNVVVGAA 241 Query 249 AIAVGSSAHIGFATFSSFAVLGGDIPALPILAAAPTPPLGPAWVALLIVGASSGVAVGQQ 308 A+AVGSSAHIG ATFSSF VLGGD+PALP+LAA P PPLGP WVALLIVGA++ VAVGQQ Sbjct 242 AVAVGSSAHIGLATFSSFTVLGGDVPALPVLAAVPEPPLGPVWVALLIVGAAAAVAVGQQ 301 Query 309 CARRALPFVAAMAKLLVAAVAGALVMAVLGYGGGGRLGNFGDVGVDEGALVLGVLFWFTF 368 ARR P A AKL+VA+ AL MA+LG GGGRLGNFG VGVD+ GV WFT Sbjct 302 VARRPAPIHIAAAKLVVASAVAALTMALLGEAGGGRLGNFGQVGVDQTTFGPGVFLWFTV 361 Query 369 VGWVTVVIAGGISRRPKRLRPAPPV-----------ELDADESSPPVDMFDGAASEQPPA 417 +G +TVV++GGI RRP+R+R P +LD E+ P VD A Sbjct 362 IGGLTVVMSGGIVRRPRRVRATEPEPEPEPEAAPEQDLDDAETGPIVDPVAAAPEPVTAE 421 Query 418 SVAEDVPPSHDDIANGLKAPTADDEALPLSDEPP 451 VAE VP D + + DD P +D P Sbjct 422 PVAEPVPGEPDPALDPEEHFIVDDAGSPPNDSAP 455 >gi|333989542|ref|YP_004522156.1| hypothetical protein JDM601_0902 [Mycobacterium sp. JDM601] gi|333485510|gb|AEF34902.1| integral membrane protein [Mycobacterium sp. JDM601] Length=464 Score = 428 bits (1100), Expect = 1e-117, Method: Compositional matrix adjust. Identities = 271/403 (68%), Positives = 316/403 (79%), Gaps = 4/403 (0%) Query 30 VVALGIIAAVTLLQLLIANSDMTGAWGAIASMWLGVHLVPISIGGRALGVMPLLPVLLMV 89 +VAL +IAAVTLLQLLIANSDMTGA GAIASMWLGVH VPISI GR LGV+PLLPVLLMV Sbjct 1 MVALTVIAAVTLLQLLIANSDMTGASGAIASMWLGVHQVPISIDGRELGVLPLLPVLLMV 60 Query 90 WATARSTARATSPQSSGLVVRWVVASALGGPLLMAAIALAVIHDASSVVTELQTPSALRA 149 TAR+TA+ATS +S VVRW+VASALGGPLL+AAI+LAVIHDA+SV+TELQTP AL A Sbjct 61 AGTARTTAQATSEGASWFVVRWIVASALGGPLLIAAISLAVIHDAASVITELQTPQALNA 120 Query 150 FTSVLVVHSVGAATGVWSRVGRRALAATALPDWLHDSMRAAAAGVLALLGLSGVVTAGSL 209 FT VLVVH++GAA GV S++GRR LA T LP+WL DS+RAAAAG+LAL GL+G VT SL Sbjct 121 FTHVLVVHAIGAAIGVGSQLGRRVLAETPLPNWLADSLRAAAAGMLALFGLAGAVTVISL 180 Query 210 VVHWATMQELYGITDSIFGQFSLTVLSVLYAPNVIVGTSAIAVGSSAHIGFATFSSFAVL 269 VVHW TM ELY ITDS+FGQ SLT+L++LY PNV+VG +A+AVGSSAHIG A FS+F VL Sbjct 181 VVHWGTMHELYAITDSLFGQLSLTLLALLYVPNVVVGAAAMAVGSSAHIGPALFSAFTVL 240 Query 270 GGDIPALPILAAAPTPPLGPAWVALLIVGASSGVAVGQQCARRALPFVAAMAKLLVAAVA 329 GGDIPA+PILAAAPTPPLGP WVALLI+GA+SGVAVGQQCARRALP + A+AK+L AA Sbjct 241 GGDIPAVPILAAAPTPPLGPVWVALLIIGAASGVAVGQQCARRALPLLPALAKVLTAAFI 300 Query 330 GALVMAVLGYGGGGRLGNFGDVGVDEGALVLGVLFWFTFVGWVTVVIAGGISRRPK---R 386 A+ MA+LG+ GGGRLGNFGDVGVD+ V WF +G +TVV+ GG++R Sbjct 301 AAVAMALLGFAGGGRLGNFGDVGVDQATFGPAVFCWFAAIGALTVVMIGGVARGATGTPP 360 Query 387 LRPAPPVELDADESSPPVDMFDGAASEQPPASVAEDVPPSHDD 429 + PA P +S P D +A E P V E V P D Sbjct 361 MSPAAPRRAAEPDSVPQPDSEPESAPEPAPDQV-EVVAPEEPD 402 >gi|108801285|ref|YP_641482.1| hypothetical protein Mmcs_4321 [Mycobacterium sp. MCS] gi|119870436|ref|YP_940388.1| hypothetical protein Mkms_4407 [Mycobacterium sp. KMS] gi|108771704|gb|ABG10426.1| conserved hypothetical protein [Mycobacterium sp. MCS] gi|119696525|gb|ABL93598.1| conserved hypothetical protein [Mycobacterium sp. KMS] Length=472 Score = 420 bits (1080), Expect = 2e-115, Method: Compositional matrix adjust. Identities = 295/454 (65%), Positives = 338/454 (75%), Gaps = 11/454 (2%) Query 9 DDRAAGARPARDLVRVAFGPGVVALGIIAAVTLLQLLIANSDMTGAWGAIASMWLGVHLV 68 D+R G R AR+L+RVAFGP VVAL +IAAVTLLQLLIANSDMTGA+GAIASMWLGVHLV Sbjct 2 DNRPVGTRQARELLRVAFGPSVVALVVIAAVTLLQLLIANSDMTGAFGAIASMWLGVHLV 61 Query 69 PISIGGRALGVMPLLPVLLMVWATARSTARATSPQSSGLVVRWVVASALGGPLLMAAIAL 128 P+SIGG LG MPL+P L+MVW TAR+TA AT P S V RWVVASALGGPLL+AAIAL Sbjct 62 PVSIGGSELGAMPLMPALMMVWGTARTTAAATPPHGSWFVTRWVVASALGGPLLIAAIAL 121 Query 129 AVIHDASSVVTELQTPSALRAFTSVLVVHSVGAATGVWSRVGRRALAATALPDWLHDSMR 188 AVIHDA+SV+TELQTPSALRAF VLVVH +GAA GV SRVGRR + + LP+WL D+ R Sbjct 122 AVIHDAASVLTELQTPSALRAFGGVLVVHLIGAAIGVASRVGRRTVLTSPLPNWLPDAFR 181 Query 189 AAAAGVLALLGLSGVVTAGSLVVHWATMQELYGITDSIFGQFSLTVLSVLYAPNVIVGTS 248 AAAAGVLAL GL GVV AGSLVVHW+TM EL+ ITDS+FGQFSLTVLS+LY PNV+VG + Sbjct 182 AAAAGVLALAGLCGVVIAGSLVVHWSTMHELFAITDSVFGQFSLTVLSLLYLPNVVVGAA 241 Query 249 AIAVGSSAHIGFATFSSFAVLGGDIPALPILAAAPTPPLGPAWVALLIVGASSGVAVGQQ 308 A+AVGSSAHIG ATFSSF VLGGD+PALP+LAA P PPLGP WVALLIVGA++ VAVGQQ Sbjct 242 AVAVGSSAHIGLATFSSFTVLGGDVPALPVLAAVPEPPLGPVWVALLIVGAAAAVAVGQQ 301 Query 309 CARRALPFVAAMAKLLVAAVAGALVMAVLGYGGGGRLGNFGDVGVDEGALVLGVLFWFTF 368 ARR P A AKL+VA+ AL MA+LG GGGRLGNFG VGVD+ GV WFT Sbjct 302 VARRPAPIHIAAAKLVVASAVAALTMALLGEAGGGRLGNFGQVGVDQTTFGPGVFLWFTV 361 Query 369 VGWVTVVIAGGISRRPKRLRPAPPV-----------ELDADESSPPVDMFDGAASEQPPA 417 +G +TVV++GGI RRP+R+R P +LD E+ P VD A Sbjct 362 IGGLTVVMSGGIVRRPRRVRVTEPEPEPEPEAAPEQDLDDAETGPIVDPVAAAPEPVTAE 421 Query 418 SVAEDVPPSHDDIANGLKAPTADDEALPLSDEPP 451 VAE VP D + + DD P +D P Sbjct 422 PVAEPVPGEPDPALDPEEHFIVDDAGSPPNDSAP 455 >gi|145222463|ref|YP_001133141.1| hypothetical protein Mflv_1873 [Mycobacterium gilvum PYR-GCK] gi|145214949|gb|ABP44353.1| hypothetical protein Mflv_1873 [Mycobacterium gilvum PYR-GCK] Length=478 Score = 410 bits (1055), Expect = 2e-112, Method: Compositional matrix adjust. Identities = 253/381 (67%), Positives = 303/381 (80%), Gaps = 1/381 (0%) Query 11 RAAGARPARDLVRVAFGPGVVALGIIAAVTLLQLLIANSDMTGAWGAIASMWLGVHLVPI 70 R G R ARDL+RVAFGP +VAL IIAA+ LLQLLIANSDMTGA GAIAS+WLGVH VP+ Sbjct 4 RPVGTRQARDLLRVAFGPSIVALVIIAAIVLLQLLIANSDMTGALGAIASIWLGVHQVPV 63 Query 71 SIGGRALGVMPLLPVLLMVWATARSTARATSPQSSGLVVRWVVASALGGPLLMAAIALAV 130 SI G ALGVMPLLPVLLM++ TAR+TA AT+ +S V RWVVASALGGP+L AI LAV Sbjct 64 SIAGTALGVMPLLPVLLMIYGTARTTAAATT-STSWFVTRWVVASALGGPILFTAICLAV 122 Query 131 IHDASSVVTELQTPSALRAFTSVLVVHSVGAATGVWSRVGRRALAATALPDWLHDSMRAA 190 IHDA+SV+TELQTP A RAF V VVH +GA GV SR+G R LA + LP W+ D++R A Sbjct 123 IHDAASVLTELQTPDATRAFGGVFVVHLIGAVLGVGSRLGPRLLALSRLPAWIPDALRGA 182 Query 191 AAGVLALLGLSGVVTAGSLVVHWATMQELYGITDSIFGQFSLTVLSVLYAPNVIVGTSAI 250 AAGV+AL+GLSG AGSL+VHW+TM +LY IT+S+FGQFSLTVLSVLY PN+++G +A+ Sbjct 183 AAGVIALMGLSGAAVAGSLIVHWSTMHDLYSITESMFGQFSLTVLSVLYLPNIVIGAAAV 242 Query 251 AVGSSAHIGFATFSSFAVLGGDIPALPILAAAPTPPLGPAWVALLIVGASSGVAVGQQCA 310 AVGSSAHIG ATFSSF V GGDIPALP+LAA PTPPLGP WVAL+I+ A S VA+GQQCA Sbjct 243 AVGSSAHIGLATFSSFTVFGGDIPALPVLAAVPTPPLGPVWVALMIIAAVSAVALGQQCA 302 Query 311 RRALPFVAAMAKLLVAAVAGALVMAVLGYGGGGRLGNFGDVGVDEGALVLGVLFWFTFVG 370 RR LP V A+AK++VAA A MA+LG+ GGG LGNFG VGVD+ V WF +G Sbjct 303 RRPLPLVTALAKVVVAATVAAATMALLGFAGGGALGNFGQVGVDQSTFAPAVFLWFAGIG 362 Query 371 WVTVVIAGGISRRPKRLRPAP 391 +TVV++GG++ R ++ +P P Sbjct 363 GLTVVMSGGVTPRVRKPKPEP 383 >gi|315442908|ref|YP_004075787.1| hypothetical protein Mspyr1_12720 [Mycobacterium sp. Spyr1] gi|315261211|gb|ADT97952.1| hypothetical protein Mspyr1_12720 [Mycobacterium sp. Spyr1] Length=494 Score = 408 bits (1049), Expect = 8e-112, Method: Compositional matrix adjust. Identities = 252/381 (67%), Positives = 302/381 (80%), Gaps = 1/381 (0%) Query 11 RAAGARPARDLVRVAFGPGVVALGIIAAVTLLQLLIANSDMTGAWGAIASMWLGVHLVPI 70 R G R ARDL+RVAFGP +VAL IIAA+ LLQLLIANSDMTGA GAIAS+WLGVH VP+ Sbjct 20 RPVGTRQARDLLRVAFGPSIVALVIIAAIVLLQLLIANSDMTGALGAIASIWLGVHQVPV 79 Query 71 SIGGRALGVMPLLPVLLMVWATARSTARATSPQSSGLVVRWVVASALGGPLLMAAIALAV 130 SI G ALGVMPLLPVLLM++ TAR+TA AT+ +S V RWVVASALGGP+L AI LAV Sbjct 80 SIAGTALGVMPLLPVLLMIYGTARTTAAATT-STSWFVTRWVVASALGGPILFTAICLAV 138 Query 131 IHDASSVVTELQTPSALRAFTSVLVVHSVGAATGVWSRVGRRALAATALPDWLHDSMRAA 190 IHDA+SV+TELQTP A RAF V VVH +GA GV SR+G R LA + LP W+ D++R A Sbjct 139 IHDAASVLTELQTPDATRAFGGVFVVHLIGAVLGVGSRLGPRLLALSRLPAWIPDALRGA 198 Query 191 AAGVLALLGLSGVVTAGSLVVHWATMQELYGITDSIFGQFSLTVLSVLYAPNVIVGTSAI 250 AAGV+AL+GLSG AGSL+VHW+TM +LY IT+S+FGQFSLTVLSVLY PN+++G +A+ Sbjct 199 AAGVIALMGLSGAAVAGSLIVHWSTMHDLYSITESMFGQFSLTVLSVLYLPNIVIGAAAV 258 Query 251 AVGSSAHIGFATFSSFAVLGGDIPALPILAAAPTPPLGPAWVALLIVGASSGVAVGQQCA 310 AVGSSAHIG ATFSSF V GGDIPALP+LAA PTPPLGP W AL+I+ A S VA+GQQCA Sbjct 259 AVGSSAHIGLATFSSFTVFGGDIPALPVLAAVPTPPLGPVWEALMIIAAVSAVALGQQCA 318 Query 311 RRALPFVAAMAKLLVAAVAGALVMAVLGYGGGGRLGNFGDVGVDEGALVLGVLFWFTFVG 370 RR LP V A+AK++VAA A MA+LG+ GGG LGNFG VGVD+ V WF +G Sbjct 319 RRPLPLVTALAKVVVAATVAAATMALLGFAGGGALGNFGQVGVDQSTFAPAVFLWFAGIG 378 Query 371 WVTVVIAGGISRRPKRLRPAP 391 +TVV++GG++ R ++ +P P Sbjct 379 GLTVVMSGGVTPRVRKPKPEP 399 >gi|326904823|gb|EGE51756.1| LOW QUALITY PROTEIN: hypothetical protein TBPG_02742 [Mycobacterium tuberculosis W-148] Length=213 Score = 394 bits (1012), Expect = 2e-107, Method: Compositional matrix adjust. Identities = 212/213 (99%), Positives = 213/213 (100%), Gaps = 0/213 (0%) Query 1 VNRVSASADDRAAGARPARDLVRVAFGPGVVALGIIAAVTLLQLLIANSDMTGAWGAIAS 60 +NRVSASADDRAAGARPARDLVRVAFGPGVVALGIIAAVTLLQLLIANSDMTGAWGAIAS Sbjct 1 MNRVSASADDRAAGARPARDLVRVAFGPGVVALGIIAAVTLLQLLIANSDMTGAWGAIAS 60 Query 61 MWLGVHLVPISIGGRALGVMPLLPVLLMVWATARSTARATSPQSSGLVVRWVVASALGGP 120 MWLGVHLVPISIGGRALGVMPLLPVLLMVWATARSTARATSPQSSGLVVRWVVASALGGP Sbjct 61 MWLGVHLVPISIGGRALGVMPLLPVLLMVWATARSTARATSPQSSGLVVRWVVASALGGP 120 Query 121 LLMAAIALAVIHDASSVVTELQTPSALRAFTSVLVVHSVGAATGVWSRVGRRALAATALP 180 LLMAAIALAVIHDASSVVTELQTPSALRAFTSVLVVHSVGAATGVWSRVGRRALAATALP Sbjct 121 LLMAAIALAVIHDASSVVTELQTPSALRAFTSVLVVHSVGAATGVWSRVGRRALAATALP 180 Query 181 DWLHDSMRAAAAGVLALLGLSGVVTAGSLVVHW 213 DWLHDSMRAAAAGVLALLGLSGVVTAGSLVVHW Sbjct 181 DWLHDSMRAAAAGVLALLGLSGVVTAGSLVVHW 213 >gi|226365055|ref|YP_002782838.1| hypothetical protein ROP_56460 [Rhodococcus opacus B4] gi|226243545|dbj|BAH53893.1| hypothetical membrane protein [Rhodococcus opacus B4] Length=476 Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 148/352 (43%), Positives = 205/352 (59%), Gaps = 12/352 (3%) Query 19 RDLVRVAFGPGVVALGIIAAVTLLQLLIANSDMTGAWGAIASMWLGVHLVPISIGGRALG 78 R L+ VAF P V + +++A+ ++ L+ ANSD+TG +GAIA+ WL +H VP++I G +LG Sbjct 8 RALLAVAFRPAGVTVVLLSALIVVTLVAANSDLTGTFGAIAASWLAIHQVPLTIDGTSLG 67 Query 79 VMPLLPVLLMVWATARSTARATSPQSSGLVVRWVVASALGGPLLMAAIALAVIHDASSVV 138 V+PL+P MVW AR A P SS V+ +A+ GPL++ AIALAVI DAS+V+ Sbjct 68 VLPLIPTAGMVWVVARGCAAVVHPASSRRHALQVIGAAVAGPLVVTAIALAVIADASAVI 127 Query 139 TELQTPSALRAFTSVLVVHSVGAATGV----WSRVGRRALAATALPDWLHDSMRAAAAGV 194 L +P+AL AF VL VH + A GV W VG P W+ D++R + Sbjct 128 -PLSSPNALAAFGWVLSVHLLAAGIGVTVAMWPTVGAE------FPSWVRDAVRPGLRAM 180 Query 195 LALLGLSGVVTAGSLVVHWATMQELYGITDSIFGQFSLTVLSVLYAPNVIVGTSAIAVGS 254 +A+LG V+ SL++ W+T+ L D G LT+LSVLY PNV+VG SA +G Sbjct 181 MAILGAGAVMVTISLLMEWSTVGSLLEDGDGFVGSLGLTILSVLYLPNVVVGASAAVLGG 240 Query 255 SAHIGFATFSSFAVLGGDIPALPILAAAPTPPLGPAWVALLIVGASSGVAVGQQCARRAL 314 +A IG + S F +GG +P LP+L A P G AW ALL++ GV +G+ C RR + Sbjct 241 TAQIGDVSVSVFGNVGGSLPPLPLLGAVPDGVSGGAWPALLVIPLLIGVMLGRDCGRR-V 299 Query 315 PFVAAMAKLLVAAVAGALVMAVLGYGGGGRLGNFGDVGVDEGALVLGVLFWF 366 A+ +L AA +V AVLG GGRLG FG V ++ A L W Sbjct 300 AGQEALFTVLTAAAGVGVVTAVLGLVSGGRLGAFGTVDLNWWAFGLLTFAWL 351 >gi|111022543|ref|YP_705515.1| hypothetical protein RHA1_ro05577 [Rhodococcus jostii RHA1] gi|110822073|gb|ABG97357.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=507 Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 152/383 (40%), Positives = 216/383 (57%), Gaps = 26/383 (6%) Query 2 NRVSASADDRAAG--------ARPA------RDLVRVAFGPGVVALGIIAAVTLLQLLIA 47 RV+ A RA G RP R L+ VAF P V + +++A+ ++ L+ A Sbjct 6 QRVAQGARRRAVGDEERQVPRQRPVPDADEMRALLAVAFRPAGVTVVLLSALIVVTLVAA 65 Query 48 NSDMTGAWGAIASMWLGVHLVPISIGGRALGVMPLLPVLLMVWATARSTARATSPQSSGL 107 NSD+TG +GAIA+ WL +H VP++I G +LGV+PL+P MVW AR A P SS Sbjct 66 NSDLTGTFGAIAASWLAIHQVPLTIDGTSLGVLPLIPTAGMVWVVARGCAGVVHPASSRR 125 Query 108 VVRWVVASALGGPLLMAAIALAVIHDASSVVTELQTPSALRAFTSVLVVHSVGAATGV-- 165 V+ +A+ GPL++ AI+LAVI DAS+V+ L +P+AL AF VL VH + + GV Sbjct 126 HALQVIGAAVAGPLVVTAISLAVIADASAVI-PLSSPNALAAFGWVLFVHLLASVIGVTV 184 Query 166 --WSRVGRRALAATALPDWLHDSMRAAAAGVLALLGLSGVVTAGSLVVHWATMQELYGIT 223 W +G + +P W+ D++R + A+LG V+ SL++ W+T+ L Sbjct 185 AMWPTLGAQ------VPSWVRDAVRPGLRALTAILGAGAVMVTISLLMEWSTVGSLLERG 238 Query 224 DSIFGQFSLTVLSVLYAPNVIVGTSAIAVGSSAHIGFATFSSFAVLGGDIPALPILAAAP 283 D + G LT+LSVLY PNV+VG +A +G +A IG + S F +GG +P LP+L A P Sbjct 239 DGVVGMLGLTILSVLYLPNVVVGAAAAVMGGTAQIGDVSVSVFGNVGGSLPPLPLLGAVP 298 Query 284 TPPLGPAWVALLIVGASSGVAVGQQCARRALPFVAAMAKLLVAAVAGALVMAVLGYGGGG 343 G AW ALL++ GV +G+ C RR + A+ +L AA +V AVLG GG Sbjct 299 DGVSGGAWPALLVIPLLIGVMLGRDCGRR-VAGQEALFTVLTAAAGVGVVTAVLGLVSGG 357 Query 344 RLGNFGDVGVDEGALVLGVLFWF 366 RLG FG V ++ A L W Sbjct 358 RLGAFGTVELNWWAFGLLTFAWL 380 >gi|226307912|ref|YP_002767872.1| hypothetical protein RER_44250 [Rhodococcus erythropolis PR4] gi|226187029|dbj|BAH35133.1| hypothetical membrane protein [Rhodococcus erythropolis PR4] Length=514 Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 156/419 (38%), Positives = 220/419 (53%), Gaps = 24/419 (5%) Query 18 ARDLVRVAFGPGVVALGIIAAVTLLQLLIANSDMTGAWGAIASMWLGVHLVPISIGGRAL 77 AR L+ VAF P + + +IAAV ++ L+ A+SD+TG +GAIA+ WL +H VP +I G L Sbjct 39 ARKLLTVAFRPSGLTMLLIAAVVVVTLVSASSDLTGTFGAIATTWLVIHQVPATISGVQL 98 Query 78 GVMPLLPVLLMVWATARSTARATSPQSSGLVVRWVVASALGGPLLMAAIALAVIHDASSV 137 GV+PLLP +M+W AR A S +V +A+ GPL + AIALAV+ DAS+ Sbjct 99 GVLPLLPTAVMMWVVARRCASTAVHTDSRDDTLRLVGAAVAGPLTITAIALAVVADASAA 158 Query 138 VTELQTPSALRAFTSVLVVHSVGAATGV----WSRVGRRALAATALPDWLHDSMRAAAAG 193 + L +P+ L AF V +H + A+ GV W RV +P W ++R A A Sbjct 159 I-PLSSPNTLAAFGWVAGIHLIAASVGVAAAHWDRV------VAEIPPWASAAVRPATAA 211 Query 194 VLALLGLSGVVTAGSLVVHWATMQELYGITDSIFGQFSLTVLSVLYAPNVIVGTSAIAVG 253 ALL V SL+V W+T+ +L + G LTVLS+LY PN++VG +A+ G Sbjct 212 SAALLAAGAVAVVVSLLVSWSTVGDLLARGNGFVGVLGLTVLSLLYLPNLVVGAAAVMTG 271 Query 254 SSAHIGFATFSSFAVLGGDIPALPILAAAPTPPLGPAWVALLIVGASSGVAVGQQCARRA 313 S+A G + S F +GGD+P LP+L A P G W LLIV A+ G+ +G+ CARR Sbjct 272 STADFGNVSISVFGNIGGDLPPLPLLGAIPEGVAGGIWPVLLIVPAAVGMMLGRDCARRI 331 Query 314 LPFVAAMAKLLVAAVAGALVMAVLGYGGGGRLGNFGDVGVDEGALVLGVLFWFTFVGWVT 373 + +A +L AA +VMA+L GG LG FG V V L W G V+ Sbjct 332 AGQDSVLA-VLTAAAGAGVVMALLALAAGGDLGQFGTVEVLWWGFGLLTFAWLGLFGTVS 390 Query 374 VVIAGGISRRPKRLRPAPPVELDADESSPPVDMFDGAASEQPPASVAEDVPPSHDDIAN 432 + A S R DE +PP + A + +P ++ P +D N Sbjct 391 ALFAMWFSHRGHM----------KDEVAPPT--AEPARTVEPELAITAAATPEDEDDEN 437 >gi|229495092|ref|ZP_04388838.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|229318023|gb|EEN83898.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length=522 Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 158/411 (39%), Positives = 221/411 (54%), Gaps = 13/411 (3%) Query 18 ARDLVRVAFGPGVVALGIIAAVTLLQLLIANSDMTGAWGAIASMWLGVHLVPISIGGRAL 77 AR L+ VAF P + + +IAAV ++ L+ A+SD+TG +GAIA+ WL +H VP +I G L Sbjct 51 ARKLLTVAFRPSGLTMLLIAAVVVVTLVSASSDLTGTFGAIATTWLVIHQVPATISGVQL 110 Query 78 GVMPLLPVLLMVWATARSTARATSPQSSGLVVRWVVASALGGPLLMAAIALAVIHDASSV 137 GV+PLLP +M+W AR A S +V +A+ GPL + AIALAV+ DAS+ Sbjct 111 GVLPLLPTAVMMWVVARRCASTAVHTDSRDDTLRLVGAAVAGPLTITAIALAVVADASAA 170 Query 138 VTELQTPSALRAFTSVLVVHSVGAATGV----WSRVGRRALAATALPDWLHDSMRAAAAG 193 + L +P+ L AF V +H + A+ GV W RV +P W ++R AAA Sbjct 171 I-PLSSPNTLAAFGWVAGIHLIAASVGVAAAHWDRV------VAEIPPWTSAAVRPAAAA 223 Query 194 VLALLGLSGVVTAGSLVVHWATMQELYGITDSIFGQFSLTVLSVLYAPNVIVGTSAIAVG 253 ALL V SL+V W+T+ +L + G LTVLS+LY PN++VG +A+ G Sbjct 224 SAALLAAGAVAVVVSLLVSWSTVGDLLARGNGFVGVLGLTVLSLLYLPNLVVGAAAVMTG 283 Query 254 SSAHIGFATFSSFAVLGGDIPALPILAAAPTPPLGPAWVALLIVGASSGVAVGQQCARRA 313 S+A G + S F +GGD+P LP+L A P G W LLIV A+ GV +G+ CARR Sbjct 284 STADFGNVSISVFGNIGGDLPPLPLLGAVPEGVAGGIWPVLLIVPAAVGVMLGRDCARRI 343 Query 314 LPFVAAMAKLLVAAVAGALVMAVLGYGGGGRLGNFGDVGVDEGALVLGVLFWFTFVGWVT 373 + +A +L AA +VMA+L GG LG FG V V L W G V+ Sbjct 344 AGQDSVLA-VLTAAAGAGVVMALLALAAGGDLGQFGTVEVLWWGFGLLTFAWLGLFGTVS 402 Query 374 VVIAGGISRRPK-RLRPAPPVELDADESSPPVDMFDGAASEQPPASVAEDV 423 + A S R + APP A S P + + A ++ A++V Sbjct 403 ALFAMWFSHRGHMKDEVAPPTAEPARASEPELAITAAATTDGEDDENADEV 453 >gi|262201334|ref|YP_003272542.1| hypothetical protein Gbro_1365 [Gordonia bronchialis DSM 43247] gi|262084681|gb|ACY20649.1| hypothetical protein Gbro_1365 [Gordonia bronchialis DSM 43247] Length=508 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 140/371 (38%), Positives = 201/371 (55%), Gaps = 6/371 (1%) Query 10 DRAAGARPARDLVRVAFGPGVVALGIIAAVTLLQLLIANSDMTGAWGAIASMWLGVHLVP 69 R A AR+LV VAF +AL ++A V L LL+A S MTG A+AS WL +H VP Sbjct 27 QRDASDGSARELVLVAFAVPAIALVVLAIVVLTVLLMAGSSMTGLGTAVASCWLAIHQVP 86 Query 70 ISIGGRALGVMPLLPVLLMVWATARSTARATSPQSSGLVVRWVVASALGGPLLMAAIALA 129 +++ G +GV+PLLP L++V AT R ARA + + + V SA+ GPLL+ A++LA Sbjct 87 VTLSGVTIGVLPLLPTLVVVAATGRLCARAAHGRRAPSELVAVALSAVAGPLLITAMSLA 146 Query 130 VIHDASSVVTELQTPSALRAFTSVLVVHSVGAATGVWSRVGRRALAATALPDWLHDSMRA 189 V+ D ++V+ +Q+P+ L AF L +H GA G+ R L +R Sbjct 147 VVMDGATVL-PVQSPNPLLAFAYTLGIHVAGAVGGIAWSRRRDPALRRRLSAADRRGVRW 205 Query 190 AAAGVLALLGLSGVVTAGSLVVHWATMQELYGITDSIFGQFSLTVLSVLYAPNVIVGTSA 249 A VL L + V+ LV+ + +L + G LT+LS+LY PN++VG A Sbjct 206 GLAAVLMLFVVGAVLVTVRLVMRHDMLGQLLETGNGFDGYLGLTMLSLLYLPNLMVGAVA 265 Query 250 IAVGSSAHIGFATFSSFAVLGGDIPALPILAAAPTPPLGPAWVALL--IVGASSGVAVGQ 307 + VGS AH+G A F FAV GG +P +P+LA P P G + LL +V + V Sbjct 266 VLVGSDAHVGSAGFDLFAVHGGPLPPVPVLAVLPDVP-GAGSLGLLGFVVPLAVAGVVAW 324 Query 308 QCARRALPFVAAMAKLLVAAVAGALVMAVLGYGGGGRLGNFGDVGVDEGALVLGVLFWFT 367 +C R + +A + + VA A ++AVL GG+LG FGDVG+ + + L W Sbjct 325 RC--RDIDPLANVRSVGVAGAVAASIIAVLSAVAGGQLGEFGDVGITVSSACVYTLGWIV 382 Query 368 FVGWVTVVIAG 378 VG +T VI G Sbjct 383 VVGMLTAVIYG 393 >gi|54026962|ref|YP_121204.1| hypothetical protein nfa49880 [Nocardia farcinica IFM 10152] gi|54018470|dbj|BAD59840.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=538 Score = 166 bits (420), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 127/327 (39%), Positives = 184/327 (57%), Gaps = 1/327 (0%) Query 51 MTGAWGAIASMWLGVHLVPISIGGRALGVMPLLPVLLMVWATARSTARATSPQSSGLVVR 110 MTG AIA+ WLG+H VP+ +G LG++PLLP +++WA AR ARA P + + Sbjct 75 MTGTSAAIAASWLGMHQVPLEVGKTTLGLLPLLPTAVLLWAAARECARAAVPNGTRTDLA 134 Query 111 WVVASALGGPLLMAAIALAVIHDASSVVTELQTPSALRAFTSVLVVHSVGAATGVWSRVG 170 W++ +ALGGPLL+ A+ LAV+ DAS V+ ++ P+ L AF VL +H + A G+ SR Sbjct 135 WLLGAALGGPLLVTAVCLAVVTDASGVLP-VRPPNTLAAFAWVLGLHLLAAGAGIASREL 193 Query 171 RRALAATALPDWLHDSMRAAAAGVLALLGLSGVVTAGSLVVHWATMQELYGITDSIFGQF 230 R + LP W +R A ++ LL + VT SL H++T+ ++YG +G Sbjct 194 PRVVDTLRLPPWAVSGIRGAGRSLVRLLACAAAVTVISLFAHYSTIGDIYGGAGDGWGVL 253 Query 231 SLTVLSVLYAPNVIVGTSAIAVGSSAHIGFATFSSFAVLGGDIPALPILAAAPTPPLGPA 290 LTVLSVLY PNV++G + +G++A G A+ F+V+GG +PA+P+LAA P P Sbjct 254 GLTVLSVLYMPNVVIGALGVLLGATAEFGTASVGLFSVVGGPVPAVPVLAAMPMGPAAGW 313 Query 291 WVALLIVGASSGVAVGQQCARRALPFVAAMAKLLVAAVAGALVMAVLGYGGGGRLGNFGD 350 W LL+V A+ GV G AR + A L +A +++ V GG LG FG Sbjct 314 WALLLVVPAAVGVLGGLDLARLTRDEIRAPWATLTSAAVTTVLLLVAAVLAGGELGGFGH 373 Query 351 VGVDEGALVLGVLFWFTFVGWVTVVIA 377 VG+D L W GW+ + A Sbjct 374 VGLDLPILAAAGFGWLAVTGWIGLTAA 400 >gi|296140987|ref|YP_003648230.1| hypothetical protein Tpau_3306 [Tsukamurella paurometabola DSM 20162] gi|296029121|gb|ADG79891.1| conserved hypothetical protein [Tsukamurella paurometabola DSM 20162] Length=497 Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 138/374 (37%), Positives = 192/374 (52%), Gaps = 23/374 (6%) Query 11 RAAGARPA--RDLVRVAFGPGVVALGIIAAVTLLQLLIANSDMTGAWGAIASMWLGVHLV 68 RAAG P+ R L VAFGP +V L V + LL A +D+ +A +WL VH V Sbjct 6 RAAGPGPSETRPLFVVAFGPSLVTLASALVVGAIVLLSAGTDLAALVPTVAGLWLAVHQV 65 Query 69 PISIGGRALGVMPLLPVLLMVWATARSTARATSPQSSGLVVRWVVASALGGPLLMAAIAL 128 P++I LGV+PL+P + +VW AR+ RA +R V+ A+ GP L AI+L Sbjct 66 PVTISDITLGVLPLVPTVALVWGAARAARRAGGEGRPLAELRSVLLCAIAGPALFTAISL 125 Query 129 AVIHDASSVVTELQTPSALRAFTSVLVVHSVGAATGV----WSRVGRRALAATALPDWLH 184 AV++DA+ T + TPS L AF L VH GA G+ W V R LP W+ Sbjct 126 AVVNDAAGRFT-ISTPSPLTAFLCTLAVHLGGALLGLAPAYWPAVVRY----LGLPGWVT 180 Query 185 DSMRAAAAGVLALLGLSGVVTAGSLVVHWATMQELYGITDSIFGQFSLTVLSVLYAPNVI 244 DS R A +L G+ + L+ W T+ EL + G +L VLS+LY PNV+ Sbjct 181 DSARLAGTALLVFFGVGLAIVLVRLIWQWQTVFELVRSGNDAVGMVALVVLSLLYLPNVV 240 Query 245 VGTSAIAVGSSAHIGFATFSSFAVLGGDIPALPILAAAPTPPLGPAWVALLIVGASSGVA 304 + +A+ +G S +G + S F+ G P +PILA P + LL V A+ + Sbjct 241 IAAAALPLGVSVQLGPISMSLFSAAPGRAPGIPILAVLPQGESPWYLLPLLAVPAAVAIW 300 Query 305 VGQQCARRAL---PFVAAMAKLLVAAVAGALVMAVLGYGGGGRLGNFGDVGVDEGALVLG 361 +G++CA R L P VA++A + AG V A + GG LG FG GVD L Sbjct 301 IGRRCASRTLILGPTVASVATTALFTAAGFTVAA---FAAGGTLGGFGYAGVD-----LP 352 Query 362 VLFWFTFVGWVTVV 375 LF FTF W+ ++ Sbjct 353 QLFGFTF-AWIALI 365 >gi|312138587|ref|YP_004005923.1| integral membrane protein [Rhodococcus equi 103S] gi|311887926|emb|CBH47238.1| putative integral membrane protein [Rhodococcus equi 103S] Length=538 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 139/368 (38%), Positives = 205/368 (56%), Gaps = 4/368 (1%) Query 18 ARDLVRVAFGPGVVALGIIAAVTLLQLLIANSDMTGAWGAIASMWLGVHLVPISIGGRAL 77 AR LV VA P A+ +++AV L+ L+ +NSD+TGA GAIA+ W +H V ++I L Sbjct 25 ARALVGVALRPTGAAIVLLSAVVLVTLVSSNSDLTGAIGAIATSWFALHQVSLTITDAPL 84 Query 78 GVMPLLPVLLMVWATARSTARATSPQSSGLVVRWVVASALGGPLLMAAIALAVIHDASSV 137 G++PLLP +++W AR AR P +S VV +A+ GPL IALAV+ DAS+V Sbjct 85 GILPLLPTAVLMWVVARGCARVVEPDTSAREAAKVVGAAVAGPLAATLIALAVVTDASAV 144 Query 138 VTELQTPSALRAFTSVLVVHSVGAATGVWSRVGRRALAATALPDWLHDSMRAAAAGVLAL 197 T + +P+A A V+ +H++ A GV S VGR AA P WL +R A ++L Sbjct 145 -TPISSPNAGAALVWVVAIHALAAGAGVVSVVGRTRCAALGAPTWLPSVVRPAVRAAVSL 203 Query 198 LGLSGVVTAGSLVVHWATMQELYGITDSIFGQFSLTVLSVLYAPNVIVGTSAIAVGSSAH 257 V+ SL+ W+ + +L G + G LTV+SVLY PNV VG A+ +G +A+ Sbjct 204 FAAGSVLALASLLWSWSEVGDLLGEGGGVVGVLGLTVVSVLYLPNVAVGGVAVLLGGTAN 263 Query 258 IGFATFSSFAVLGGDIPALPILAAAPTPPLGPAWVALLIVGASSGVAVGQQCARRALPFV 317 +G + S F ++ G +P +P+L PT GPAW LL+V + G +G+ C R L Sbjct 264 VGGTSLSLFEIVAGPVPPVPVLGGVPTELAGPAWPVLLLVPVAVGALLGRDCGRLRLSLQ 323 Query 318 AAMAKLLVAAVAGALVMAVLGYGGGGRLGNFGDVGVDEGALVLGVLFWFTFVGWVTVVIA 377 +L AA ++ A +G+ GG LG +G VGV+ AL L W G + +A Sbjct 324 DTAFAVLTAAGVAGVLAAAVGFAAGGELGAYGFVGVEPWALGLLTFGWLVLPG---LAVA 380 Query 378 GGISRRPK 385 ++RR + Sbjct 381 SVLARRNE 388 >gi|325676346|ref|ZP_08156025.1| hypothetical protein HMPREF0724_13808 [Rhodococcus equi ATCC 33707] gi|325552907|gb|EGD22590.1| hypothetical protein HMPREF0724_13808 [Rhodococcus equi ATCC 33707] Length=538 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 139/368 (38%), Positives = 205/368 (56%), Gaps = 4/368 (1%) Query 18 ARDLVRVAFGPGVVALGIIAAVTLLQLLIANSDMTGAWGAIASMWLGVHLVPISIGGRAL 77 AR LV VA P A+ +++AV L+ L+ +NSD+TGA GAIA+ W +H V ++I L Sbjct 25 ARALVGVALRPTGAAIVLLSAVVLVTLVSSNSDLTGAIGAIATSWFALHQVSLTITDAPL 84 Query 78 GVMPLLPVLLMVWATARSTARATSPQSSGLVVRWVVASALGGPLLMAAIALAVIHDASSV 137 G++PLLP +++W AR AR P +S VV +A+ GPL IALAV+ DAS+V Sbjct 85 GILPLLPTAVLMWVVARGCARVVEPDTSAREAAKVVGAAVAGPLAATLIALAVVTDASAV 144 Query 138 VTELQTPSALRAFTSVLVVHSVGAATGVWSRVGRRALAATALPDWLHDSMRAAAAGVLAL 197 T + +P+A A V+ +H++ A GV S VGR AA P WL +R A ++L Sbjct 145 -TPISSPNAGAALVWVVAIHALAAGAGVVSVVGRTRCAALGAPTWLPSMVRPAVRAAVSL 203 Query 198 LGLSGVVTAGSLVVHWATMQELYGITDSIFGQFSLTVLSVLYAPNVIVGTSAIAVGSSAH 257 V+ SL+ W+ + +L G + G LTV+SVLY PNV VG A+ +G +A+ Sbjct 204 FAAGSVLALASLLWSWSEVGDLLGEGGGVVGVLGLTVVSVLYLPNVAVGGVAVLLGGTAN 263 Query 258 IGFATFSSFAVLGGDIPALPILAAAPTPPLGPAWVALLIVGASSGVAVGQQCARRALPFV 317 +G + S F ++ G +P +P+L PT GPAW LL+V + G +G+ C R L Sbjct 264 VGGTSLSLFEIVAGPVPPVPVLGGVPTELAGPAWPVLLLVPVAVGALLGRDCGRLRLSLQ 323 Query 318 AAMAKLLVAAVAGALVMAVLGYGGGGRLGNFGDVGVDEGALVLGVLFWFTFVGWVTVVIA 377 +L AA ++ A +G+ GG LG +G VGV+ AL L W G + +A Sbjct 324 DTAFAVLTAAGVAGVLAAAVGFAAGGELGAYGFVGVEPWALGLLTFGWLVLPG---LAVA 380 Query 378 GGISRRPK 385 ++RR + Sbjct 381 SVLARRNE 388 >gi|296393910|ref|YP_003658794.1| hypothetical protein Srot_1500 [Segniliparus rotundus DSM 44985] gi|296181057|gb|ADG97963.1| hypothetical protein Srot_1500 [Segniliparus rotundus DSM 44985] Length=460 Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 119/341 (35%), Positives = 177/341 (52%), Gaps = 5/341 (1%) Query 15 ARPARDLVRVAFGPGVVALGIIAAVTLLQLLIANSDMTGAWGAIASMWLGVHLVPISIGG 74 AR R L VAF P V LG +AA+ L+ L+ A+SD+ GA+GAIA +WL H VP+SI Sbjct 16 AREPRSLFAVAFAPAGVLLGFVAAIALVTLVSADSDLQGAFGAIALVWLAAHQVPVSIAD 75 Query 75 RALGVMPLLPVLLMVWATARSTARATSPQSSGLVVRWVVASALGGPLLMAAIALAVIHDA 134 ALG +PL+P L++W AR +A+A +++G +R V+A+A+GGPL++ I LA DA Sbjct 76 IALGALPLVPTALLMWFVARLSAQAACTRATGRQLRQVLAAAMGGPLVITMILLATAKDA 135 Query 135 SSVVTELQTPSALRAFTSVLVVHSVGAATGV-WSRVGRRALAATALPDWLHDSMRAAAAG 193 ++VV + A V VH V + GV WS RR A ALP W + + Sbjct 136 ATVVPLNAP-APAPALAWVTGVHLVASGLGVLWS---RREAVAQALPAWGPCAAQLGVRS 191 Query 194 VLALLGLSGVVTAGSLVVHWATMQELYGITDSIFGQFSLTVLSVLYAPNVIVGTSAIAVG 253 L L +S +T ++V HW + + + G F + V+S+LY PNVIV + +G Sbjct 192 GLWLFTISAALTVLNMVAHWGKLSAGFDVGSGGVGLFGVLVMSLLYLPNVIVAGVDVLLG 251 Query 254 SSAHIGFATFSSFAVLGGDIPALPILAAAPTPPLGPAWVALLIVGASSGVAVGQQCARRA 313 ++ G + G +P LP + G A L+V A+ G +G QCA + Sbjct 252 ATVRFGGTSVQLAHAQIGQLPLLPSFTPLTSWHFGRAAFVALLVPAAVGAWLGSQCAAKT 311 Query 314 LPFVAAMAKLLVAAVAGALVMAVLGYGGGGRLGNFGDVGVD 354 A+ + AA A ++ V+ GR+G G V+ Sbjct 312 QSVTASARCAVCAAAFAASLVCVVSAAACGRVGVIGQWSVN 352 >gi|317508748|ref|ZP_07966399.1| hypothetical protein HMPREF9336_02771 [Segniliparus rugosus ATCC BAA-974] gi|316252942|gb|EFV12361.1| hypothetical protein HMPREF9336_02771 [Segniliparus rugosus ATCC BAA-974] Length=482 Score = 143 bits (360), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 107/300 (36%), Positives = 162/300 (54%), Gaps = 5/300 (1%) Query 15 ARPARDLVRVAFGPGVVALGIIAAVTLLQLLIANSDMTGAWGAIASMWLGVHLVPISIGG 74 AR R L VAF P + LG++AA++L+ L+ +SD+ GA+GAIA MWL VH VPISI Sbjct 54 AREPRSLFTVAFAPSGMLLGLVAAISLVALVSVDSDLQGAFGAIALMWLAVHQVPISIAD 113 Query 75 RALGVMPLLPVLLMVWATARSTARATSPQSSGLVVRWVVASALGGPLLMAAIALAVIHDA 134 LG +PL P ++ AR +A+A S +S+ +R V+A+A+GGPL++ I LA DA Sbjct 114 NTLGALPLAPTAFVMLFVARISAQAASTRSTSRDLRQVLAAAMGGPLVITMILLATAKDA 173 Query 135 SSVVTELQTPSALRAFTSVLVVHSVGAATGV-WSRVGRRALAATALPDWLHDSMRAAAAG 193 ++VV + A V VH V + G+ WS RR ALP W +++ Sbjct 174 ATVVPLNAP-APAPALAWVTGVHLVASGLGILWS---RREAVGEALPSWGPAALQLGVRA 229 Query 194 VLALLGLSGVVTAGSLVVHWATMQELYGITDSIFGQFSLTVLSVLYAPNVIVGTSAIAVG 253 L L L G +T ++V HWA + +G G + ++S LY PNV+V + + +G Sbjct 230 GLWLFVLGGGLTVLNMVAHWARLASGFGAGSDGVGLVGVLLISALYFPNVMVSGTDVLLG 289 Query 254 SSAHIGFATFSSFAVLGGDIPALPILAAAPTPPLGPAWVALLIVGASSGVAVGQQCARRA 313 ++ +G + G +P LP+ + + G A A L+V A G +G +CA +A Sbjct 290 ATVRMGGTSIGLDHAQIGQLPLLPVFSPLVSWHFGKASFAALLVPALVGAWLGGECAGKA 349 >gi|343927180|ref|ZP_08766659.1| hypothetical protein GOALK_086_00270 [Gordonia alkanivorans NBRC 16433] gi|343762918|dbj|GAA13585.1| hypothetical protein GOALK_086_00270 [Gordonia alkanivorans NBRC 16433] Length=536 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 138/358 (39%), Positives = 185/358 (52%), Gaps = 15/358 (4%) Query 18 ARDLVRVAFGPGVVALGIIAAVTLLQLLIANSDMTGAWGAIASMWLGVHLVPISIGGRAL 77 AR L VAF +AL + V L LL+A S +TG AIAS WL +H VP++I G + Sbjct 37 ARQLAVVAFTVPALALVTLIVVMLTVLLLAGSGLTGLPSAIASSWLAIHQVPVTISGVTI 96 Query 78 GVMPLLPVLLMVWATARSTARA------TSPQSSGLV-VRWVVASALGGPLLMAAIALAV 130 GV+PLLP L++ TAR TARA T + L V VV SA+ GPLL+ A++LA+ Sbjct 97 GVLPLLPTLVVAIGTARLTARAIGGSGPTQRSAHDLFDVGAVVCSAIVGPLLITAMSLAI 156 Query 131 IHDASSVVTELQTPSALRAFTSVLVVHSVGAATGV-WSRVGRRALAAT-ALPDWLHDSMR 188 + D SV+ +QTP+AL AF + +H A GV W R R AA + R Sbjct 157 VMDGGSVL-PVQTPNALIAFAYTIGIHGGAALAGVTWVR--RHDFAARWGMSYADRRGFR 213 Query 189 AAAAGVLALLGLSGVVTAGSLVVHWATMQELYGITDSIFGQFSLTVLSVLYAPNVIVGTS 248 VLAL+ V+ +++ + EL G L++LS++Y PN+++G + Sbjct 214 YGLVAVLALVVAGAVLVCLRMLMRHTEIGELIDTGYDFDGFLGLSLLSLMYLPNLMIGAT 273 Query 249 AIAVGSSAHIGFATFSSFAVLGGDIPALPILAAAPTPPLGPAWVAL-LIVGASSGVAVGQ 307 AI VGS IG T F V GG +P +P LA P +W L LI A+ VG Sbjct 274 AILVGSDVQIGAMTVDLFTVRGGAVPPVPALAVLPEGTGAGSWGFLGLIAPAAVAAFVGW 333 Query 308 QCARRALPFVAAMAKLLVAAVAGALVMAVLGYGGGGRLGNFGDVGVDEGALVLGVLFW 365 +C R L VA + + VAA A MA+L GG LG FGDV V A + L W Sbjct 334 RC--RDLNPVAHVRSIGVAAAVAASAMAILTAAVGGTLGEFGDVAVTVSAAGVFTLGW 389 >gi|337290310|ref|YP_004629331.1| hypothetical protein CULC22_00699 [Corynebacterium ulcerans BR-AD22] gi|334698616|gb|AEG83412.1| putative membrane protein [Corynebacterium ulcerans BR-AD22] Length=576 Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 112/353 (32%), Positives = 182/353 (52%), Gaps = 20/353 (5%) Query 5 SASADDRAAGARPARDLVRVAFGPGVVALGIIAAVTLLQLLIANSDMTGAWGAIASMWLG 64 +ASA ++ A R L+ P V+ L I +L+ L+ ++ M +A WL Sbjct 52 TASAPEKTTFAASLRSLLPTVLIPNVIVLIAIIIFSLIVLIATSTPMAAMPATVAETWLA 111 Query 65 VHLVPISIGGRALGVMPLLPVLLMVWATARSTARATSPQSSGLVVRWVVASALGGPLLMA 124 ++L P+S G +L ++P+LP + +V AR +A + S + ++ AL P+L+ Sbjct 112 LNLAPVSGRGISLSLLPILPAIGVVMLVARRVYKAVKDRISLHDLLILLCGALAVPVLIT 171 Query 125 AIALAVIHDASSVVTELQTPSALRAFTSVLVVHS----VGAATGVWSRVGRRALAATALP 180 A A++ DASSV ++ +P+ A +V+++H+ +G T +W + RR +P Sbjct 172 LTACAMLWDASSVF-DVASPNVFAAVGTVILLHACAFMIGMGTRLWRALARR----YGVP 226 Query 181 DWLHDSMRAAAAGVLALLGLSGVVTAGSLVVHW-ATMQELYGITDSIFGQFSLTVLSVLY 239 W+ DS+ A V LL + +V SL VH+ A ++ L G + + G + V+S+ Y Sbjct 227 SWVVDSVLLAVRAVGYLLLAAFIVFLVSLAVHYRAFVESLQGYSTA--GIVGVMVVSLAY 284 Query 240 APNVIVGTSAIAVGSSAHIGFATFSSFAVLGGDIPALPILAAAPTPPLGPAWVALLIVGA 299 PN IV + AI VGSS +G + S FA IP +P+ AA P + PA +A+++V Sbjct 285 LPNAIVSSLAIIVGSSMELGRGSVSLFAATLVPIPPVPVFAALPA-SMAPAVMAVVLVPL 343 Query 300 SSGVAVGQQCARRALPFVAAMAKLLVAAVAGALVMAVLGYGGGGRLGNFGDVG 352 +AV R F+ A+ + VAA G L VL + GG LG +G VG Sbjct 344 ---IAVSLALWNRVSDFLNAV-TITVAAGIGTL---VLSFFAGGCLGVYGYVG 389 >gi|172040212|ref|YP_001799926.1| hypothetical protein cur_0532 [Corynebacterium urealyticum DSM 7109] gi|171851516|emb|CAQ04492.1| putative membrane protein [Corynebacterium urealyticum DSM 7109] Length=637 Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 100/322 (32%), Positives = 162/322 (51%), Gaps = 18/322 (5%) Query 58 IASMWLGVHLVPISIGGRALGVMPLLPVLLMVWATARSTARATSPQSSGLVVRWVVASAL 117 +AS+W+ + P+ + G LG +PLLP + ++ +R +A + S +R A + Sbjct 184 LASVWMVANAAPLKMQGVELGFVPLLPAIAVILGHSRRITKALGDKVSVRGLRVFAALGI 243 Query 118 GGPLLMAAIALAVIHDASSVVTELQTPSALRAFTSVLVVHSVGAATGVWSRVGRRALAAT 177 G P+++ IA ++ DA V ++Q P RA + +V+ + A G+ R+ R L Sbjct 244 GLPMVLTFIAWLMLLDAGRVF-DVQAPHLGRALLNTFLVNGLAVAIGMRGRIWRALLMRR 302 Query 178 ALPDWLHDSMRAAAA--GVLALLGLSGVVTAGSLVVHWATMQELYGITDSIFGQFSLTVL 235 P W +S+R G + + GL GVV A L+ +W+ + Y I + +T+L Sbjct 303 HWPTWPVESVRLGRNFLGWMCVAGLLGVVIA--LIGNWSAARAAYEIAPGFWPGVGMTLL 360 Query 236 SVLYAPNVIVGTSAIAVGSSAHIGFATFSSFAVLGGDIPALPILAAAPTPPLGPAWVALL 295 ++LY PN+++G +A+ +G ++GF FS F + ++P LPILAAAP P+ P LL Sbjct 361 ALLYLPNIVIGAAAVLLGGEYNLGFGLFSLFNITNVELPPLPILAAAPNAPI-PGGPFLL 419 Query 296 IVGASSGVAVGQQCARRALPFVAAMAKLLVAAVAGALVMAVLG-YGGGGRLGNFGDVG-- 352 + A VA + R+ + + L A VA ALV A +G + G LG G G Sbjct 420 AIPAIVAVATVYRFVRQRSYVESPVFTGLGAGVA-ALVFAFIGAWLARGVLGTVGITGPL 478 Query 353 -----VDEGALVL---GVLFWF 366 V+ G +L VL WF Sbjct 479 PWLAAVEAGGWLLLPATVLMWF 500 >gi|326383721|ref|ZP_08205406.1| hypothetical protein SCNU_12317 [Gordonia neofelifaecis NRRL B-59395] gi|326197485|gb|EGD54674.1| hypothetical protein SCNU_12317 [Gordonia neofelifaecis NRRL B-59395] Length=462 Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 121/369 (33%), Positives = 180/369 (49%), Gaps = 16/369 (4%) Query 47 ANSDMTGAWGAIASMWLGVHLVPISIGGRALGVMPLLPVLLMVWATARSTARATSPQSSG 106 A + +G A A+ WL + P++IGG A+GV+PL+P LL+ + T R RAT +S Sbjct 60 AGAGFSGLGAATAAGWLIANQTPLTIGGVAIGVLPLVPTLLVGFGTYRVVRRATVDATSF 119 Query 107 LVVRWVVASALGGPLLMAAIALAVIHDASSVVTELQTPSALRAFTSVLVVHSVGAATGVW 166 + + +A+ GPLL A+ALAV+ D +S + P+ L AF +VVH V A G+ Sbjct 120 NELLRIAGTAVLGPLLATALALAVVADGASS-GPVGNPAPLGAFGMTVVVHGVAAIGGLL 178 Query 167 SRVGRRALAATALPDWLHDSMRAAAAGVLALLGLSGVVTAGSLVVHWATMQELYGITDSI 226 RV + L A+P RA A L+ G+ V H+ + ++ G+ ++ Sbjct 179 PRVTQPFLDEFAIPASDRVGARAGTAAFFVLIAGGGIAVFAGFVAHFGAVADILGLGNTF 238 Query 227 FGQFSLTVLSVLYAPNVIVGTSAIAVGSSAHIGFATFSSFAVLGGDIPALPILAAAPTPP 286 G LTVLS+LY PNV+V +A+ G+SA +G T +F+ G +P +PI PT Sbjct 239 DGYLGLTVLSILYLPNVVVSAAAVTAGASATLGGLTVDAFSTHPGTLPPVPIAGVVPTSD 298 Query 287 LGPAWVALLIVGASSGVAVGQQCARRALPFVAAMAKLLVAAVAGALVMAVLGYGGGGRLG 346 LGP L V GV +G R+ VA + + V A + +M V GGRLG Sbjct 299 LGPWGAVLFAVPLVGGVLLGWYT--RSDDVVAHLRAVGVGASVASGLMVVAVALSGGRLG 356 Query 347 NFGDVGVDEGALVLGVLFWFTFVG----------WVTVVIAGGISRRPKRLRPAPPVELD 396 G GV ++ L +F T +G W+ AG +RR + P EL Sbjct 357 EMGQAGV---SVPLAGVFTLTALGVTALLTVGVLWLRSSTAGRSTRRSSAIVADDPDELV 413 Query 397 ADESSPPVD 405 A++ D Sbjct 414 AEDEDLEAD 422 >gi|334696426|gb|AEG81223.1| putative membrane protein [Corynebacterium ulcerans 809] Length=576 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 111/353 (32%), Positives = 181/353 (52%), Gaps = 20/353 (5%) Query 5 SASADDRAAGARPARDLVRVAFGPGVVALGIIAAVTLLQLLIANSDMTGAWGAIASMWLG 64 +ASA ++ A R L+ P V+ L I +L+ L+ ++ M +A WL Sbjct 52 TASAPEKITFAASLRSLLPTVLIPNVIVLIAIIIFSLIVLIATSTPMAAMPATVAETWLA 111 Query 65 VHLVPISIGGRALGVMPLLPVLLMVWATARSTARATSPQSSGLVVRWVVASALGGPLLMA 124 ++L P+S G +L ++P+LP + +V AR +A + S + ++ AL P+L+ Sbjct 112 LNLAPVSGRGISLSLLPILPAIGVVMLVARRVYKAVKDRISLHDLLILLCGALAIPVLIT 171 Query 125 AIALAVIHDASSVVTELQTPSALRAFTSVLVVHS----VGAATGVWSRVGRRALAATALP 180 A A++ DASSV ++ +P+ A +V+++H+ +G T +W + RR +P Sbjct 172 LTACAMLWDASSVF-DVASPNVFAAVGTVILLHACAFMIGMGTRLWRALARR----YGVP 226 Query 181 DWLHDSMRAAAAGVLALLGLSGVVTAGSLVVHW-ATMQELYGITDSIFGQFSLTVLSVLY 239 W+ DS+ A V LL + +V SL VH+ A ++ L G + + G + V+S+ Y Sbjct 227 SWVVDSVLLAVRAVGYLLLAAFIVFLVSLAVHYRAFLESLQGYSTA--GIVGVMVVSLAY 284 Query 240 APNVIVGTSAIAVGSSAHIGFATFSSFAVLGGDIPALPILAAAPTPPLGPAWVALLIVGA 299 PN IV + AI VGSS +G + S FA P +P+ AA P + PA +A+++V Sbjct 285 LPNAIVSSLAIIVGSSMELGRGSVSLFAATLVPTPPVPVFAALPA-SMAPAVMAVVLVPL 343 Query 300 SSGVAVGQQCARRALPFVAAMAKLLVAAVAGALVMAVLGYGGGGRLGNFGDVG 352 +AV R F+ A+ + VAA G L VL + GG LG +G VG Sbjct 344 ---IAVSLALWNRVSDFLNAV-TITVAAGIGTL---VLSFFAGGCLGVYGYVG 389 >gi|213964979|ref|ZP_03393178.1| membrane protein [Corynebacterium amycolatum SK46] gi|213952515|gb|EEB63898.1| membrane protein [Corynebacterium amycolatum SK46] Length=516 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 140/442 (32%), Positives = 210/442 (48%), Gaps = 24/442 (5%) Query 16 RPARDLVRVAFGPGVVALGIIAAVTLLQLLIANSDMTGAWGAIASMWLGVHLVPISIGGR 75 R R + VA GVV L II+ V L+ ++++ + M+ +IASMW+ +L P G Sbjct 26 RARRFGLSVAGSYGVVLLFIIS-VALIGVIVSGAGMSPLPASIASMWMIFNLAPFRFNGT 84 Query 76 ALGVMPLLPVLLMVWATARSTARATSPQSSGLVVRWVVASALGGPLLMAAIALAVIHDAS 135 LG+ P LP +LMV A R + + S VR +V + LG P+++ IA +++DAS Sbjct 85 TLGLTPALPAVLMVMFIAWRVRREVADRISIKDVRALVGAYLGTPIVLTIIAWLMLYDAS 144 Query 136 SVVTELQTPSALRAFTSVLVVHSVGAATGVWSRVGRRALAATALPDWLHDSMRAAAAGVL 195 V +QTPS A + L+V+ V G+ R+ R L LP+WL S R A + V Sbjct 145 KVFPRIQTPSFGLAIAAALLVNLVALVLGMGQRLLRALLLRRKLPEWLLGSARLAGSYVA 204 Query 196 ALLGLSGVVTAGSLVVHWATMQELYGITDSIFGQFSLTVLSVLYAPNVIVGTSAIAVGSS 255 L + VVT SL+ H + E + ITD+ +++ LS+LY PNV G + VG Sbjct 205 WLWLVGVVVTLVSLIWHRGLLAETFAITDTAGESVAVSGLSLLYLPNVAFGAVGVLVGGK 264 Query 256 AHIGFATFSSFAVLGGDIPALPILAAAPTPPLGPAWVALLI----VGASSGVAVGQQCAR 311 + G A FAV +P LPILAA P A+ L++ + A VA ++ A Sbjct 265 STFGPAEAGLFAVHPAQLPPLPILAAMPQSLAHWAFGVLIVLPPAIAAWRVVAFLKKSAP 324 Query 312 RALPFVAAMAKLLVAAVAGALVMAVLGYGGGGRLGNFGDVGVDEGALVLGVLFWFTFVGW 371 + P++ +++AAV + + L + GG +G FG G L W G Sbjct 325 KQ-PYLV----VVLAAVWSIMFLMGLAWLLGGEVGIFGWAGASWWLTGLLGSMWLVVPGA 379 Query 372 VTVVIAGGISRRPKRLRPAPPVELDADESSP-PVDMFDGAASEQPPASVAEDVPPSHDD- 429 + VV G+ P R E+ A++ P P + DG A E A A+ D Sbjct 380 IVVVAMTGV---PSLGRDKGVSEVAAEKFPPKPAEDGDGHA-EAEDAGDADKSDNGADGS 435 Query 430 --------IANGLKAPTADDEA 443 I +G T++DEA Sbjct 436 EESEESEEIVDGEVVATSEDEA 457 >gi|145295030|ref|YP_001137851.1| hypothetical protein cgR_0974 [Corynebacterium glutamicum R] gi|140844950|dbj|BAF53949.1| hypothetical protein [Corynebacterium glutamicum R] Length=476 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 119/374 (32%), Positives = 181/374 (49%), Gaps = 30/374 (8%) Query 16 RPARDLVRVAFGPGV-----VALGIIAAVTLLQLLIANSDMTGAWGAIASMWLGVHLVPI 70 + AR + F P V VA+ ++ + + L+ NS M IA +WL ++L + Sbjct 31 KEARQSKLLRFLPTVLIPHGVAVLLVIILAVASLMFTNSSMVNLSATIAQLWLSLNLGAV 90 Query 71 SIGGRALGVMPLLPVLLMVWATARSTARATSPQSSGLVVRWVVASALGGPLLMAAIALAV 130 + G + V+P LP + +WA A RA + S + + A LG PL + AIA + Sbjct 91 AGSGEVISVLPTLPGFIFLWAIAARIHRAVKDRVSIADLGVLAALVLGIPLALTAIAAFM 150 Query 131 IHDASSVVTELQTPSALRAFTSVLVVH----SVGAATGVWSRVGRRALAATALPDWLHDS 186 + DASSV+ ++ P R V++ H +G +W + RR A P+WL D+ Sbjct 151 LFDASSVL-NVEVPPITR-LLRVMLFHLSALFLGMGPRLWQALARRYGA----PEWLIDA 204 Query 187 MRAAAAGVLALLGLSGV-VTAGSLVVHWATMQELYGITDSIFGQFSLTVLSVLYAPNVIV 245 + A ++A +S V V + + H A + G DS +L VLS+LY PN+++ Sbjct 205 ITQAFRFLIAFGTVSLVSVLVMTAINHSAFTATMQGYDDSA-SVVALIVLSILYLPNMMI 263 Query 246 GTSAIAVGSSAHIGFATFSSFAVLGGDIPALPILAAAPTPPLGPAW-VALLIVGASSGVA 304 +GS + G A+ S F+V +P LPILAA P+ P+W VALL++ A Sbjct 264 FAMGNLIGSPLYFGDASISVFSVHSVPLPPLPILAALPSE--APSWAVALLVIPAIIATW 321 Query 305 VGQQCARRALPFVAAMAKLLVAAVAGALVMAVLGYGGGGRLGNFGDVGVDEGALVLGVLF 364 V C R + +A AAV AL VL GG LG + VG++ A V V Sbjct 322 V---CVRNPM----RLAVNTTAAVISALCFLVLAVFAGGTLGVYNYVGLNLLASVGLVFV 374 Query 365 WFTFVGWVTVVIAG 378 +F VG ++IAG Sbjct 375 YFALVG---LLIAG 385 >gi|333921238|ref|YP_004494819.1| hypothetical protein AS9A_3581 [Amycolicicoccus subflavus DQS3-9A1] gi|333483459|gb|AEF42019.1| Hypothetical membrane protein [Amycolicicoccus subflavus DQS3-9A1] Length=557 Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 110/325 (34%), Positives = 174/325 (54%), Gaps = 28/325 (8%) Query 18 ARDLVRVAFGPGVVALGIIAAVTLLQLLIANSDMTGAWGAIASMWLGVHLVPISIGGRAL 77 AR L++ AF P + +G++ V L+ LL + D TG + A+ + WLG+H V + I G L Sbjct 24 ARTLMKAAFMPTGITVGLLVVVVLVVLLTGDGDFTGVFAAVGAGWLGIHQVTLPISGVKL 83 Query 78 GVMPLLPVLLMVWATARSTARATSPQSSGLVVR---WVVASALGGPLLMAAIALAVIHDA 134 GV+PL+ V ++A + S R + GL R +VA+ +G PL+M I+LAV+ DA Sbjct 84 GVLPLV-VTAAIFAASYSQCRKVA--RDGLEPRDAAQLVAAVVGVPLVMTIISLAVVKDA 140 Query 135 SSVVTELQTPSALRAFTSVLVVHSVGAATGV----WSRVGRRALAATALPDWLHDSMRAA 190 S+V+ ++ TP+ L++F +V+H + A + WS + RA +P W ++ AA Sbjct 141 STVL-KVATPNVLQSFLWTVVIHGLAAVFALGKPFWSPIAERA----RIPVWGWGALAAA 195 Query 191 AAGVLAL----LGLSGVVTAGSLVVHWATMQELYGITDSIFGQFSLTVLSVLYAPNVIVG 246 +G +AL L ++ V+ AGSL A ++E +G LT++S+LY NV+VG Sbjct 196 KSGAVALGATGLAVTMVLLAGSLDEIIAMLEEHHGAA----APLGLTLVSLLYLANVVVG 251 Query 247 TSAIAVGSSAHIGFATFSSFAVLGGDIPALPILAAAPTPPLGPAWVALLIVGASSGVAVG 306 + G+S +G + F VL P +P+LAA PT W LL+V GVA+ Sbjct 252 VIGVTTGASITVGEGHYGLFDVLPAPAPGVPVLAALPTTEAADWWPILLVVPVIGGVALA 311 Query 307 QQCAR-----RALPFVAAMAKLLVA 326 + R R FV A ++V+ Sbjct 312 RSAYRQDHGMRETFFVGGTAAVVVS 336 >gi|344043602|gb|EGV39291.1| hypothetical protein CgS9114_13850 [Corynebacterium glutamicum S9114] Length=439 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 114/346 (33%), Positives = 168/346 (49%), Gaps = 24/346 (6%) Query 31 VALGIIAAVTLLQLLIANSDMTGAWGAIASMWLGVHLVPISIGGRALGVMPLLPVLLMVW 90 V L II AV L+ NS M IA +WL ++L ++ G + V+P LP + +W Sbjct 16 VLLVIILAVA--SLMFTNSSMVNLSATIAQLWLSLNLGAVAGSGEVISVLPTLPGFIFLW 73 Query 91 ATARSTARATSPQSSGLVVRWVVASALGGPLLMAAIALAVIHDASSVVTELQTPSALRAF 150 A A RA + S + + A LG PL + AIA ++ DASSV+ ++ P R Sbjct 74 AIAARIHRAVKDRVSIADLGVLAALVLGIPLALTAIAAFMLFDASSVL-NVEVPPITR-L 131 Query 151 TSVLVVH----SVGAATGVWSRVGRRALAATALPDWLHDSMRAAAAGVLALLGLSGV-VT 205 V++ H +G +W + RR A P+WL D++ A ++A +S V V Sbjct 132 LRVMLFHLSALFLGMGPRLWQALARRYGA----PEWLIDAITQAFRFLIAFGTVSLVSVL 187 Query 206 AGSLVVHWATMQELYGITDSIFGQFSLTVLSVLYAPNVIVGTSAIAVGSSAHIGFATFSS 265 + + H A + G DS +L VLS+LY PN+++ +GS + G A+ S Sbjct 188 VMTAINHSAFTATMQGYDDSA-SVVALIVLSILYLPNMMIFAMGNLIGSPLYFGDASISV 246 Query 266 FAVLGGDIPALPILAAAPTPPLGPAW-VALLIVGASSGVAVGQQCARRALPFVAAMAKLL 324 F+V +P LPILAA P+ P+W VALL++ A + C R + +A Sbjct 247 FSVHSVPLPPLPILAALPSE--APSWAVALLVIPA---IIATWVCVRNPM----RLAVNT 297 Query 325 VAAVAGALVMAVLGYGGGGRLGNFGDVGVDEGALVLGVLFWFTFVG 370 AAV AL VL GG LG + VG++ A V V +F VG Sbjct 298 TAAVISALCFLVLAVFAGGTLGVYNYVGLNLLASVGLVFVYFALVG 343 >gi|21323625|dbj|BAB98252.1| Hypothetical membrane protein [Corynebacterium glutamicum ATCC 13032] Length=475 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 118/354 (34%), Positives = 172/354 (49%), Gaps = 27/354 (7%) Query 31 VALGIIAAVTLLQLLIANSDMTGAWGAIASMWLGVHLVPISIGGRALGVMPLLPVLLMVW 90 V L II AV L+ NS M IA +WL ++L + G + V+P LP + +W Sbjct 52 VLLVIILAVA--SLMFTNSSMVNLSATIAQLWLSLNLGAVDGSGEVISVLPTLPGFIFLW 109 Query 91 ATARSTARATSPQSSGLVVRWVVASALGGPLLMAAIALAVIHDASSVVTELQTPSALRAF 150 A A RA + S + + A LG PL + AIA ++ DASSV+ ++ P R Sbjct 110 AIAARIHRAVKDRVSIADLGVLAALVLGIPLALTAIAAFMLFDASSVL-NVEVPPITR-L 167 Query 151 TSVLVVH----SVGAATGVWSRVGRRALAATALPDWLHDSMRAAAAGVLALLGLSGV-VT 205 V++ H +G +W + RR A P+WL D++ A ++A +S V V Sbjct 168 LRVMLFHLSALFLGMGPRLWQALARRYGA----PEWLIDAITQAFRFLIAFGTVSLVSVL 223 Query 206 AGSLVVHWATMQELYGITDSIFGQFSLTVLSVLYAPNVIVGTSAIAVGSSAHIGFATFSS 265 + + H A + G DS +L VLS+LY PN+++ +GS + G A+ S Sbjct 224 VMTAINHSAFTATMQGYDDSA-SVVALIVLSILYLPNMMIFAMGNLIGSPLYFGDASISV 282 Query 266 FAVLGGDIPALPILAAAPTPPLGPAW-VALLIVGASSGVAVGQQCARRALPFVAAMAKLL 324 F+V +P LPILAA P+ L +W VALL++ A V C R + +A Sbjct 283 FSVHSVPLPPLPILAALPSEAL--SWAVALLVIPAIIATWV---CVRNPM----RLAVNT 333 Query 325 VAAVAGALVMAVLGYGGGGRLGNFGDVGVDEGALVLGVLFWFTFVGWVTVVIAG 378 AAV AL VL GG LG + VG++ A V V +F VG ++IAG Sbjct 334 TAAVISALCFLVLAVFAGGTLGVYNYVGLNLLASVGLVFVYFALVG---LLIAG 384 >gi|19552086|ref|NP_600088.1| hypothetical protein NCgl0825 [Corynebacterium glutamicum ATCC 13032] gi|62389749|ref|YP_225151.1| membrane protein [Corynebacterium glutamicum ATCC 13032] gi|41325084|emb|CAF19565.1| membrane protein [Corynebacterium glutamicum ATCC 13032] Length=439 Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 114/345 (34%), Positives = 166/345 (49%), Gaps = 22/345 (6%) Query 31 VALGIIAAVTLLQLLIANSDMTGAWGAIASMWLGVHLVPISIGGRALGVMPLLPVLLMVW 90 V L II AV L+ NS M IA +WL ++L + G + V+P LP + +W Sbjct 16 VLLVIILAVA--SLMFTNSSMVNLSATIAQLWLSLNLGAVDGSGEVISVLPTLPGFIFLW 73 Query 91 ATARSTARATSPQSSGLVVRWVVASALGGPLLMAAIALAVIHDASSVVTELQTPSALRAF 150 A A RA + S + + A LG PL + AIA ++ DASSV+ ++ P R Sbjct 74 AIAARIHRAVKDRVSIADLGVLAALVLGIPLALTAIAAFMLFDASSVL-NVEVPPITR-L 131 Query 151 TSVLVVH----SVGAATGVWSRVGRRALAATALPDWLHDSMRAAAAGVLALLGLSGV-VT 205 V++ H +G +W + RR A P+WL D++ A ++A +S V V Sbjct 132 LRVMLFHLSALFLGMGPRLWQALARRYGA----PEWLIDAITQAFRFLIAFGTVSLVSVL 187 Query 206 AGSLVVHWATMQELYGITDSIFGQFSLTVLSVLYAPNVIVGTSAIAVGSSAHIGFATFSS 265 + + H A + G DS +L VLS+LY PN+++ +GS + G A+ S Sbjct 188 VMTAINHSAFTATMQGYDDSA-SVVALIVLSILYLPNMMIFAMGNLIGSPLYFGDASISV 246 Query 266 FAVLGGDIPALPILAAAPTPPLGPAWVALLIVGASSGVAVGQQCARRALPFVAAMAKLLV 325 F+V +P LPILAA P+ L A VALL++ A + C R + +A Sbjct 247 FSVHSVPLPPLPILAALPSEALSWA-VALLVIPA---IIATWVCVRNPM----RLAVNTT 298 Query 326 AAVAGALVMAVLGYGGGGRLGNFGDVGVDEGALVLGVLFWFTFVG 370 AAV AL VL GG LG + VG++ A V V +F VG Sbjct 299 AAVISALCFLVLAVFAGGTLGVYNYVGLNLLASVGLVFVYFALVG 343 >gi|340795064|ref|YP_004760527.1| hypothetical protein CVAR_2104 [Corynebacterium variabile DSM 44702] gi|340534974|gb|AEK37454.1| putative membrane protein [Corynebacterium variabile DSM 44702] Length=591 Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 108/330 (33%), Positives = 162/330 (50%), Gaps = 26/330 (7%) Query 58 IASMWLGVHLVPISIGGRALGVMPLLPVLLMVWATARSTARATSPQSSGLVVRWVVASAL 117 I S+WL +L P++I G +LGV PLLP LL+ A +R R + + + VR + A+ Sbjct 161 IGSVWLLSNLAPVTISGASLGVAPLLPALLIFVAHSR---RIRTTCGTTVTVRGIRTVAV 217 Query 118 GG---PLLMAAIALAVIHDASSVVTELQTPSALRAFTSVLVVHSVGAATGVWSRVGRRAL 174 G P + IA ++ DAS V ++ P+ A + ++++ G+ ++ R L Sbjct 218 LGILVPAVFTLIAWLMVWDASKVF-DVAPPNIFLALLTTVLLNGAVVIAGLGPKIWRALL 276 Query 175 AATALPDWLHDSMRAAAAGVLALLGLSGVVTAGSLVVHWATMQELYGITDSIFGQFSLTV 234 +P W +S+ A LL + V A L+V+ A + Y I G LT+ Sbjct 277 LRRGMPTWPVESVLLADRFFKVLLLVGAAVAAIGLLVNHAAVGRAYDIAGGAGGVLGLTL 336 Query 235 LSVLYAPNVIVGTSAIAVGSSAHIGFATFSSFAVLGGDIPALPILAAAPTP--PLGPAWV 292 LS++Y PN+ VG +++ +G HIG + S FAV ++P LP+LA P PLGP W Sbjct 337 LSLVYFPNLAVGATSVIMGGEMHIGDGSASLFAVTNANMPPLPVLAVMPNDSIPLGPVW- 395 Query 293 ALLIVGASSGVAVGQQCARRAL---PFVAAMAKLLVAAVAGALVMAVLGYGGGGRLGNFG 349 LLI ++ V V + A R P AM L AAVAG L+ + GG LG +G Sbjct 396 -LLIPAVAAVVTVYRWFAGRRFIESPLFTAMGAGLCAAVAGLLI----AWFAGGELGYYG 450 Query 350 DVG--------VDEGALVLGVLFWFTFVGW 371 G + G +VL L F +V W Sbjct 451 STGPLLWLTPLLFLGWMVLPSLVVFGWVAW 480 Lambda K H 0.320 0.135 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 949115517168 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40