BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0959A

Length=73
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15840384|ref|NP_335421.1|  hypothetical protein MT0987 [Mycoba...   141    3e-32
gi|87300650|ref|ZP_01083492.1|  hypothetical protein WH5701_04360...  68.2    4e-10
gi|87124165|ref|ZP_01080015.1|  hypothetical protein RS9917_11156...  68.2    4e-10


>gi|15840384|ref|NP_335421.1| hypothetical protein MT0987 [Mycobacterium tuberculosis CDC1551]
 gi|121636885|ref|YP_977108.1| antitoxin [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148660739|ref|YP_001282262.1| hypothetical protein MRA_0967 [Mycobacterium tuberculosis H37Ra]
 58 more sequence titles
 Length=73

 Score =  141 bits (356),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 73/73 (100%), Positives = 73/73 (100%), Gaps = 0/73 (0%)

Query  1   MKTLYLRNVPDDVVERLERLAELAKTSVSAVAVRELTEASRRADNPALLGDLPDIGIDTT  60
           MKTLYLRNVPDDVVERLERLAELAKTSVSAVAVRELTEASRRADNPALLGDLPDIGIDTT
Sbjct  1   MKTLYLRNVPDDVVERLERLAELAKTSVSAVAVRELTEASRRADNPALLGDLPDIGIDTT  60

Query  61  ELIGGIDAERAGR  73
           ELIGGIDAERAGR
Sbjct  61  ELIGGIDAERAGR  73


>gi|87300650|ref|ZP_01083492.1| hypothetical protein WH5701_04360 [Synechococcus sp. WH 5701]
 gi|87284521|gb|EAQ76473.1| hypothetical protein WH5701_04360 [Synechococcus sp. WH 5701]
Length=74

 Score = 68.2 bits (165),  Expect = 4e-10, Method: Compositional matrix adjust.
 Identities = 37/72 (52%), Positives = 47/72 (66%), Gaps = 0/72 (0%)

Query  2   KTLYLRNVPDDVVERLERLAELAKTSVSAVAVRELTEASRRADNPALLGDLPDIGIDTTE  61
           +TLY+R+VPDDV ERLERLA  A   +S  A+REL+E +RRADN  LL  LP   ID   
Sbjct  3   RTLYIRHVPDDVAERLERLANRAGLPLSTFALRELSETARRADNADLLNALPSAPIDHGR  62

Query  62  LIGGIDAERAGR  73
           ++  +   RA R
Sbjct  63  ILEALRQIRAER  74


>gi|87124165|ref|ZP_01080015.1| hypothetical protein RS9917_11156 [Synechococcus sp. RS9917]
 gi|86168734|gb|EAQ69991.1| hypothetical protein RS9917_11156 [Synechococcus sp. RS9917]
Length=74

 Score = 68.2 bits (165),  Expect = 4e-10, Method: Compositional matrix adjust.
 Identities = 34/70 (49%), Positives = 48/70 (69%), Gaps = 0/70 (0%)

Query  2   KTLYLRNVPDDVVERLERLAELAKTSVSAVAVRELTEASRRADNPALLGDLPDIGIDTTE  61
           +TLY+R+VPDDV ERLERLA  A   +S  A++EL+E +RRADN  LL  LP   +++ E
Sbjct  3   RTLYIRHVPDDVAERLERLASRAGLPLSTFALQELSETARRADNAELLQALPSAQLESGE  62

Query  62  LIGGIDAERA  71
           ++  +   RA
Sbjct  63  ILEALRQSRA  72



Lambda     K      H
   0.315    0.134    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 131942442484




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40