BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0960
Length=127
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608100|ref|NP_215475.1| hypothetical protein Rv0960 [Mycoba... 249 7e-65
gi|289753016|ref|ZP_06512394.1| conserved hypothetical protein [... 246 7e-64
gi|340625973|ref|YP_004744425.1| hypothetical protein MCAN_09641... 224 4e-57
gi|284992100|ref|YP_003410654.1| PilT protein domain-containing ... 99.0 2e-19
gi|87124166|ref|ZP_01080016.1| hypothetical protein RS9917_11161... 92.4 2e-17
gi|217979588|ref|YP_002363735.1| PilT protein domain-containing ... 91.3 4e-17
gi|297625029|ref|YP_003706463.1| PilT domain-containing protein ... 90.9 6e-17
gi|297161843|gb|ADI11555.1| hypothetical protein SBI_08437 [Stre... 88.2 3e-16
gi|336178825|ref|YP_004584200.1| PilT protein domain-containing ... 87.8 5e-16
gi|333990432|ref|YP_004523046.1| hypothetical protein JDM601_179... 84.3 5e-15
gi|86740207|ref|YP_480607.1| PilT protein-like protein [Frankia ... 84.3 6e-15
gi|87300649|ref|ZP_01083491.1| hypothetical protein WH5701_04355... 80.9 7e-14
gi|240168730|ref|ZP_04747389.1| PilT domain-containing protein [... 80.1 1e-13
gi|336179019|ref|YP_004584394.1| PilT protein domain-containing ... 77.4 6e-13
gi|269957933|ref|YP_003327722.1| PilT protein domain-containing ... 75.5 2e-12
gi|312195768|ref|YP_004015829.1| PilT protein domain protein [Fr... 71.6 4e-11
gi|288917657|ref|ZP_06412020.1| PilT protein domain protein [Fra... 68.2 4e-10
gi|15607207|ref|NP_214579.1| hypothetical protein Rv0065 [Mycoba... 67.8 4e-10
gi|340625099|ref|YP_004743551.1| hypothetical protein MCAN_00651... 67.8 5e-10
gi|289747834|ref|ZP_06507212.1| conserved hypothetical protein [... 67.8 5e-10
gi|336118169|ref|YP_004572938.1| hypothetical protein MLP_25210 ... 66.6 1e-09
gi|111224206|ref|YP_715000.1| hypothetical protein FRAAL4817 [Fr... 66.6 1e-09
gi|333025632|ref|ZP_08453696.1| putative PilT protein-like prote... 66.6 1e-09
gi|271964589|ref|YP_003338785.1| PilT protein domain-containing ... 65.9 2e-09
gi|152966078|ref|YP_001361862.1| PilT protein-like [Kineococcus ... 63.9 7e-09
gi|50843515|ref|YP_056742.1| hypothetical protein PPA2073 [Propi... 61.6 4e-08
gi|282854837|ref|ZP_06264171.1| toxin-antitoxin system, toxin co... 61.6 4e-08
gi|313827108|gb|EFS64822.1| toxin-antitoxin system, toxin compon... 61.2 5e-08
gi|313832495|gb|EFS70209.1| toxin-antitoxin system, toxin compon... 61.2 5e-08
gi|284992067|ref|YP_003410621.1| PilT domain-containing protein ... 60.8 6e-08
gi|311896050|dbj|BAJ28458.1| hypothetical protein KSE_26460 [Kit... 60.5 8e-08
gi|314967266|gb|EFT11365.1| toxin-antitoxin system, toxin compon... 60.5 9e-08
gi|289426009|ref|ZP_06427756.1| toxin-antitoxin system, toxin co... 60.1 1e-07
gi|15608858|ref|NP_216236.1| hypothetical protein Rv1720c [Mycob... 60.1 1e-07
gi|333989975|ref|YP_004522589.1| PilT protein domain-containing ... 59.3 2e-07
gi|337766707|emb|CCB75418.1| conserved protein of unknown functi... 58.2 4e-07
gi|315446137|ref|YP_004079016.1| nucleic acid-binding protein, c... 57.8 5e-07
gi|340626727|ref|YP_004745179.1| hypothetical protein MCAN_17311... 57.0 8e-07
gi|240170953|ref|ZP_04749612.1| hypothetical protein MkanA1_1670... 57.0 8e-07
gi|330465116|ref|YP_004402859.1| toxin [Verrucosispora maris AB-... 57.0 1e-06
gi|313836325|gb|EFS74039.1| toxin-antitoxin system, toxin compon... 56.2 1e-06
gi|326903335|gb|EGE50268.1| toxin [Mycobacterium tuberculosis W-... 56.2 2e-06
gi|336177502|ref|YP_004582877.1| PilT protein domain-containing ... 56.2 2e-06
gi|145225776|ref|YP_001136454.1| PilT domain-containing protein ... 55.5 3e-06
gi|256371478|ref|YP_003109302.1| PilT protein domain-containing ... 55.5 3e-06
gi|218295256|ref|ZP_03496092.1| PilT protein domain protein [The... 54.7 5e-06
gi|134102274|ref|YP_001107935.1| hypothetical protein SACE_5826 ... 53.5 1e-05
gi|84494959|ref|ZP_00994078.1| hypothetical protein JNB_09174 [J... 53.1 1e-05
gi|336117185|ref|YP_004571952.1| hypothetical protein MLP_15350 ... 52.0 3e-05
gi|15607689|ref|NP_215063.1| hypothetical protein Rv0549c [Mycob... 48.9 2e-04
>gi|15608100|ref|NP_215475.1| hypothetical protein Rv0960 [Mycobacterium tuberculosis H37Rv]
gi|15840385|ref|NP_335422.1| hypothetical protein MT0988 [Mycobacterium tuberculosis CDC1551]
gi|31792149|ref|NP_854642.1| hypothetical protein Mb0985 [Mycobacterium bovis AF2122/97]
78 more sequence titles
Length=127
Score = 249 bits (637), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 127/127 (100%), Positives = 127/127 (100%), Gaps = 0/127 (0%)
Query 1 MIVVDASAALAALLNDGQARQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRRAL 60
MIVVDASAALAALLNDGQARQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRRAL
Sbjct 1 MIVVDASAALAALLNDGQARQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRRAL 60
Query 61 QTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTGQAQC 120
QTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTGQAQC
Sbjct 61 QTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTGQAQC 120
Query 121 PITVVPR 127
PITVVPR
Sbjct 121 PITVVPR 127
>gi|289753016|ref|ZP_06512394.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
gi|289693603|gb|EFD61032.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
Length=127
Score = 246 bits (629), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 126/127 (99%), Positives = 126/127 (99%), Gaps = 0/127 (0%)
Query 1 MIVVDASAALAALLNDGQARQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRRAL 60
MIVVDASAALAALLNDGQARQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGR AL
Sbjct 1 MIVVDASAALAALLNDGQARQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRWAL 60
Query 61 QTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTGQAQC 120
QTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTGQAQC
Sbjct 61 QTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTGQAQC 120
Query 121 PITVVPR 127
PITVVPR
Sbjct 121 PITVVPR 127
>gi|340625973|ref|YP_004744425.1| hypothetical protein MCAN_09641 [Mycobacterium canettii CIPT
140010059]
gi|340004163|emb|CCC43301.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=127
Score = 224 bits (570), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 122/127 (97%), Positives = 124/127 (98%), Gaps = 0/127 (0%)
Query 1 MIVVDASAALAALLNDGQARQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRRAL 60
MIVVDASAALAALLNDGQARQLIAAERLHVPHLVDSEIASGLRRL QRDRLGAADG RAL
Sbjct 1 MIVVDASAALAALLNDGQARQLIAAERLHVPHLVDSEIASGLRRLVQRDRLGAADGWRAL 60
Query 61 QTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTGQAQC 120
QTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNC LVTADLRLS+TGQA+C
Sbjct 61 QTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCELVTADLRLSNTGQARC 120
Query 121 PITVVPR 127
PITVVPR
Sbjct 121 PITVVPR 127
>gi|284992100|ref|YP_003410654.1| PilT protein domain-containing protein [Geodermatophilus obscurus
DSM 43160]
gi|284065345|gb|ADB76283.1| PilT protein domain protein [Geodermatophilus obscurus DSM 43160]
Length=130
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/129 (46%), Positives = 78/129 (61%), Gaps = 4/129 (3%)
Query 1 MIVVDASAALAALLNDGQ----ARQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADG 56
MIVVDAS +AALL GQ AR+++ + H PHL+D E+ S +RR A DRLG
Sbjct 1 MIVVDASTVVAALLAAGQGGDDAREVMLGDDAHAPHLLDVEVLSAVRRHALSDRLGDTAA 60
Query 57 RRALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTG 116
R A+ R L V R+ L +R ++R +++AYD YVALAE L LVT D RLS
Sbjct 61 RDAVTAMRDLPVIRHGHDLLLDRALQLRDSITAYDGVYVALAEILGATLVTGDRRLSHAP 120
Query 117 QAQCPITVV 125
+CP++VV
Sbjct 121 GLRCPVSVV 129
>gi|87124166|ref|ZP_01080016.1| hypothetical protein RS9917_11161 [Synechococcus sp. RS9917]
gi|86168735|gb|EAQ69992.1| hypothetical protein RS9917_11161 [Synechococcus sp. RS9917]
Length=127
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 78/125 (63%), Gaps = 0/125 (0%)
Query 1 MIVVDASAALAALLNDGQARQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRRAL 60
M+VVDAS + ALL DG AR +A L P L+D+E+ S LRRL +RLG +AL
Sbjct 1 MVVVDASVLVDALLLDGAARARLAEANLQAPELIDAELLSVLRRLVLAERLGEQHALQAL 60
Query 61 QTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTGQAQC 120
T +RL + R+ L+ R WE+R NLSAYDA YVALAE L L+TAD R + +C
Sbjct 61 ATSQRLGLRRHTSRHLWPRAWELRTNLSAYDAIYVALAEQLGTTLLTADARAARAPGLRC 120
Query 121 PITVV 125
P+ V+
Sbjct 121 PVEVL 125
>gi|217979588|ref|YP_002363735.1| PilT protein domain-containing protein [Methylocella silvestris
BL2]
gi|217504964|gb|ACK52373.1| PilT protein domain protein [Methylocella silvestris BL2]
Length=130
Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/130 (47%), Positives = 75/130 (58%), Gaps = 5/130 (3%)
Query 1 MIVVDASAALAALLNDGQA-----RQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAAD 55
MIVVDASA L ALL A R A + LH PHL+D E+A +RR A + A
Sbjct 1 MIVVDASALLEALLRTPSAKTVEDRLFAAGQTLHAPHLLDVEVAQVIRRYALSGEIDRAR 60
Query 56 GRRALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDT 115
G AL L + RYP L RIW++R NL+AYDA+YVALAEAL+ L+T D RL+
Sbjct 61 GGLALADLADLPLRRYPHDFLLPRIWDLRNNLTAYDAAYVALAEALDAPLLTRDRRLAAA 120
Query 116 GQAQCPITVV 125
+ I +V
Sbjct 121 AGHRARIELV 130
>gi|297625029|ref|YP_003706463.1| PilT domain-containing protein [Truepera radiovictrix DSM 17093]
gi|297166209|gb|ADI15920.1| PilT protein domain protein [Truepera radiovictrix DSM 17093]
Length=134
Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 55/118 (47%), Positives = 70/118 (60%), Gaps = 5/118 (4%)
Query 1 MIVVDASAALAALLNDGQA-----RQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAAD 55
MIV+DASA ++ LL A +++ A LHVP L D E+ LRR ++ + A
Sbjct 1 MIVLDASAGVSFLLRIEPAYAPLRERVLRAGTLHVPQLFDLEVLHALRRYERQRFISPAR 60
Query 56 GRRALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLS 113
RA R L R+P V L ER+WE+RANLSAYDA+YVALAE L L+T D RL
Sbjct 61 AERAFARLRELRCERHPHVPLAERVWELRANLSAYDATYVALAEILEAPLITLDARLG 118
>gi|297161843|gb|ADI11555.1| hypothetical protein SBI_08437 [Streptomyces bingchenggensis
BCW-1]
Length=139
Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/132 (41%), Positives = 77/132 (59%), Gaps = 10/132 (7%)
Query 1 MIVVDASAALAALLNDGQARQLI-----AAERLHVPHLVDSEIASGLRRLAQ-----RDR 50
MIVVD SA + L ++G L+ +RL PHL+D EI S L LA+ +
Sbjct 1 MIVVDCSALIFFLSDEGPTGHLVRERVAKEDRLAAPHLIDYEIMSALLGLARGRRGGEPK 60
Query 51 LGAADGRRALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADL 110
L R+A+ T+R LA+ R+ + L+ER+ + +NLS YDA YVALAE L L+T+D
Sbjct 61 LSEKQLRKAVATYRDLAIDRHETLILWERVKGLSSNLSVYDAQYVALAEGLGLPLITSDA 120
Query 111 RLSDTGQAQCPI 122
R+ +G A+C I
Sbjct 121 RIDRSGVARCEI 132
>gi|336178825|ref|YP_004584200.1| PilT protein domain-containing protein [Frankia symbiont of Datisca
glomerata]
gi|334859805|gb|AEH10279.1| PilT protein domain protein [Frankia symbiont of Datisca glomerata]
Length=133
Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/127 (41%), Positives = 73/127 (58%), Gaps = 4/127 (3%)
Query 3 VVDASAALAALL---NDGQARQLIAAER-LHVPHLVDSEIASGLRRLAQRDRLGAADGRR 58
VVD S + L D RQ ++A R LH PH +D E+AS +R LA ++ G +
Sbjct 6 VVDCSLVIDVLSVRNGDEVLRQRLSAPRTLHAPHHLDVEVASTVRGLAAGKKITDHRGEQ 65
Query 59 ALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTGQA 118
L + RL +TR+PV R+WE+R NL AYDA+Y+ALAEAL C L+T D ++ +
Sbjct 66 MLADYARLRITRHPVWPYHPRLWELRHNLGAYDAAYIALAEALGCELLTGDTKIKNAAGH 125
Query 119 QCPITVV 125
+ + V
Sbjct 126 RATVIVT 132
>gi|333990432|ref|YP_004523046.1| hypothetical protein JDM601_1792 [Mycobacterium sp. JDM601]
gi|333486400|gb|AEF35792.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=129
Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/128 (47%), Positives = 78/128 (61%), Gaps = 4/128 (3%)
Query 1 MIVVDASAALAALLN-DG--QARQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGR 57
MIVVDA+A + AL DG + R +A E LH P L+D E+ S LR L + +L AA
Sbjct 1 MIVVDAAALVDALTGVDGTDELRSELADEELHAPALLDFEVVSALRGLTRGGQLSAARAH 60
Query 58 RALQTWRRLAVTRYP-VVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTG 116
AL + LA+ R+P L R + +R NL+AYDA+YVALAEAL CA++T D RL+ +G
Sbjct 61 DALADFDALAIRRWPGSAELRLRAFTLRDNLTAYDAAYVALAEALECAVLTRDRRLARSG 120
Query 117 QAQCPITV 124
I V
Sbjct 121 GHSVEIRV 128
>gi|86740207|ref|YP_480607.1| PilT protein-like protein [Frankia sp. CcI3]
gi|86567069|gb|ABD10878.1| PilT protein-like [Frankia sp. CcI3]
Length=133
Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/126 (42%), Positives = 70/126 (56%), Gaps = 4/126 (3%)
Query 1 MIVVDASAALAALLNDGQA----RQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADG 56
MIV+D SA + L+ R L ER+ PH VD E AS LR LA+ +L +
Sbjct 1 MIVLDTSALVEFLVGTDDVADVVRALATRERIAAPHAVDLECASTLRGLARGGKLPEGEA 60
Query 57 RRALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTG 116
RAL+ R+ + RY L RIWE+R N+ YDA+Y+ALAE LN LVTA+ +L
Sbjct 61 SRALELLGRMNLRRYGHAPLLPRIWELRHNMWPYDAAYIALAETLNADLVTANRKLDRVP 120
Query 117 QAQCPI 122
+C +
Sbjct 121 GLRCTV 126
>gi|87300649|ref|ZP_01083491.1| hypothetical protein WH5701_04355 [Synechococcus sp. WH 5701]
gi|87284520|gb|EAQ76472.1| hypothetical protein WH5701_04355 [Synechococcus sp. WH 5701]
Length=127
Score = 80.9 bits (198), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 75/125 (60%), Gaps = 0/125 (0%)
Query 1 MIVVDASAALAALLNDGQARQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRRAL 60
M+VVDAS + ALL G AR +A L P L+D+E+ S LRRL D+L +AL
Sbjct 1 MVVVDASVLVDALLIQGAARDRLAEANLQAPDLIDAELLSVLRRLVLADQLAEQHALQAL 60
Query 61 QTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTGQAQC 120
T +RL + R+ L+ R WE+R+NL+AYDA YVALAE L L+T D R + +C
Sbjct 61 ATAQRLGLRRHVSRHLWPRAWELRSNLTAYDALYVALAEELGATLLTGDSRAARAPGLRC 120
Query 121 PITVV 125
+ V+
Sbjct 121 HVEVM 125
>gi|240168730|ref|ZP_04747389.1| PilT domain-containing protein [Mycobacterium kansasii ATCC 12478]
Length=162
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/129 (43%), Positives = 70/129 (55%), Gaps = 4/129 (3%)
Query 1 MIVVDASAALAALLNDGQ----ARQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADG 56
+IVVDAS AL +D AR+ +A E L P L+D E+ S RR R+ A
Sbjct 28 VIVVDASVLAVALGDDASDGRLARERLADETLAAPELIDLEVVSVWRRQVAAKRMPARRA 87
Query 57 RRALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTG 116
A+ L + R L R+WE++ L+AYDA+YVALAEAL+ LVTAD RLS
Sbjct 88 ASAVADLTNLPLRRSSHQPLLHRVWELQHVLTAYDAAYVALAEALDIVLVTADARLSRAS 147
Query 117 QAQCPITVV 125
C I VV
Sbjct 148 GTHCEIEVV 156
>gi|336179019|ref|YP_004584394.1| PilT protein domain-containing protein [Frankia symbiont of Datisca
glomerata]
gi|334859999|gb|AEH10473.1| PilT protein domain protein [Frankia symbiont of Datisca glomerata]
Length=135
Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/127 (37%), Positives = 73/127 (58%), Gaps = 5/127 (3%)
Query 3 VVDASAALAALLNDGQA-----RQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGR 57
V+D SA + L + G R+L E L P L+D EI S L + + +++ +
Sbjct 7 VIDCSALVRTLTDQGAGGVAVRRRLAGLESLAAPGLLDYEIVSALFGMLRGNKITKRETT 66
Query 58 RALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTGQ 117
+A+ ++ L + R+ + L+ R+ E+ NLSAYDA YVALAEAL L+T+D R++ +G
Sbjct 67 KAVADYQILPLVRHETLILWRRVHELHHNLSAYDAQYVALAEALGLPLITSDTRIARSGT 126
Query 118 AQCPITV 124
A C + V
Sbjct 127 AACAVEV 133
>gi|269957933|ref|YP_003327722.1| PilT protein domain-containing protein [Xylanimonas cellulosilytica
DSM 15894]
gi|269306614|gb|ACZ32164.1| PilT protein domain protein [Xylanimonas cellulosilytica DSM
15894]
Length=138
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/132 (47%), Positives = 72/132 (55%), Gaps = 9/132 (6%)
Query 2 IVVDASAALAALLNDGQARQLIAAE------RLHVPHLVDSEIASGLRRLAQRDRLGAAD 55
+VVDASA LA L A Q I E LHVPHL E S LR L L A
Sbjct 5 LVVDASA-LAEYLVSSAAGQAIGEELRAHDGALHVPHLAVVETVSVLRGLVLGGFLTAER 63
Query 56 GRRALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDT 115
AL L R+P L RIWE+R+NLSAYDA+YVALAEAL+ +VT D RL+
Sbjct 64 AAAALADLADLPAERWPSEPLLPRIWELRSNLSAYDATYVALAEALDADVVTRDARLARG 123
Query 116 GQ--AQCPITVV 125
Q ++C + VV
Sbjct 124 AQTVSRCTVRVV 135
>gi|312195768|ref|YP_004015829.1| PilT protein domain protein [Frankia sp. EuI1c]
gi|311227104|gb|ADP79959.1| PilT protein domain protein [Frankia sp. EuI1c]
Length=140
Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/130 (40%), Positives = 68/130 (53%), Gaps = 4/130 (3%)
Query 2 IVVDASAALAALLNDGQARQLIA----AERLHVPHLVDSEIASGLRRLAQRDRLGAADGR 57
+V+DASAA+A L + G A +A L P L+ E A+ LRR L ++
Sbjct 9 VVLDASAAVALLTDAGPAGTWVAKVVDGAALFAPELMPFEAANILRRHLLAGILDPSEAT 68
Query 58 RALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTGQ 117
A + V R L +R W++RANL+AYDA+YVALAEAL LVT D RL
Sbjct 69 LAHADLLAMPVRRLAYASLADRAWDLRANLTAYDAAYVALAEALPAPLVTLDARLGRASG 128
Query 118 AQCPITVVPR 127
+C + V P
Sbjct 129 PRCEVLVCPE 138
>gi|288917657|ref|ZP_06412020.1| PilT protein domain protein [Frankia sp. EUN1f]
gi|288350872|gb|EFC85086.1| PilT protein domain protein [Frankia sp. EUN1f]
Length=135
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/132 (36%), Positives = 72/132 (55%), Gaps = 7/132 (5%)
Query 1 MIVVDASAALAALLNDGQARQLIAAERL------HVPHLVDSEIASGLRRLAQRDRLGAA 54
+IVVDAS + L D R+ A +RL + P +D E+ S LR LA+R A
Sbjct 3 LIVVDASVIVDLLAGDDSPRRKAARDRLTGGDVFYAPAHLDVEVISALRGLARRTSRLAE 62
Query 55 DGRRALQTWRRLAVTRYPVVG-LFERIWEIRANLSAYDASYVALAEALNCALVTADLRLS 113
+ + RL + R + G +R+WE+R ++AYDA YVALAE ++ AL+T D + +
Sbjct 63 HTPSLIASLIRLPIRRERLNGPTAQRVWELRQTMTAYDAGYVALAEQIDAALLTCDAKYA 122
Query 114 DTGQAQCPITVV 125
T +C I ++
Sbjct 123 ATAGPRCAIELI 134
>gi|15607207|ref|NP_214579.1| hypothetical protein Rv0065 [Mycobacterium tuberculosis H37Rv]
gi|15839444|ref|NP_334481.1| hypothetical protein MT0071 [Mycobacterium tuberculosis CDC1551]
gi|31791242|ref|NP_853735.1| hypothetical protein Mb0066 [Mycobacterium bovis AF2122/97]
75 more sequence titles
Length=133
Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/107 (39%), Positives = 55/107 (52%), Gaps = 1/107 (0%)
Query 20 RQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRRALQTWRRLAVTRYPVVG-LFE 78
R L+ + PHL+D+E+ LRR D + R AL L RYP L E
Sbjct 26 RGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARAALDALPYLIDNRYPHSPRLIE 85
Query 79 RIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTGQAQCPITVV 125
W++R N++ YDA YVALA AL+ L+T D RL+ C I +V
Sbjct 86 YTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAPGLPCEIKLV 132
>gi|340625099|ref|YP_004743551.1| hypothetical protein MCAN_00651 [Mycobacterium canettii CIPT
140010059]
gi|340003289|emb|CCC42406.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=133
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/107 (39%), Positives = 55/107 (52%), Gaps = 1/107 (0%)
Query 20 RQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRRALQTWRRLAVTRYPVVG-LFE 78
R L+ + PHL+D+E+ LRR D + R AL L RYP L E
Sbjct 26 RGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARAALDALPYLIDNRYPHSPRLIE 85
Query 79 RIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTGQAQCPITVV 125
W++R N++ YDA YVALA AL+ L+T D RL+ C I +V
Sbjct 86 YTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAPGLPCEIKLV 132
>gi|289747834|ref|ZP_06507212.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|289688362|gb|EFD55850.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
Length=133
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/107 (39%), Positives = 55/107 (52%), Gaps = 1/107 (0%)
Query 20 RQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRRALQTWRRLAVTRYPVVG-LFE 78
R L+ + PHL+D+E+ LRR D + R AL L RYP L E
Sbjct 26 RGLLKEPISNAPHLLDAEVGHALRRAVLSDEISEEQARAALDALPYLIDNRYPHSPRLIE 85
Query 79 RIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTGQAQCPITVV 125
W++R N++ YDA YVALA AL+ L+T D RL+ C I +V
Sbjct 86 YTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAPGLPCEIKLV 132
>gi|336118169|ref|YP_004572938.1| hypothetical protein MLP_25210 [Microlunatus phosphovorus NM-1]
gi|334685950|dbj|BAK35535.1| hypothetical protein MLP_25210 [Microlunatus phosphovorus NM-1]
Length=128
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/110 (39%), Positives = 59/110 (54%), Gaps = 0/110 (0%)
Query 17 GQARQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRRALQTWRRLAVTRYPVVGL 76
++R L ++ VP L+ E+AS +RRL QR L A A++ L + + L
Sbjct 16 ARSRLLKDKDKTAVPDLLYLEVASAVRRLEQRGELTARRAAAAMEDLMALPLQVARLRTL 75
Query 77 FERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTGQAQCPITVVP 126
R WE+R NL+ YDA+YV LAE LVTAD RL+ +C I + P
Sbjct 76 LPRCWELRHNLTPYDAAYVTLAEFSESPLVTADRRLAAAAGPRCKIELPP 125
>gi|111224206|ref|YP_715000.1| hypothetical protein FRAAL4817 [Frankia alni ACN14a]
gi|111151738|emb|CAJ63458.1| hypothetical protein; putative PIN domain [Frankia alni ACN14a]
Length=109
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/105 (38%), Positives = 60/105 (58%), Gaps = 0/105 (0%)
Query 20 RQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRRALQTWRRLAVTRYPVVGLFER 79
R+L E L P L+D E+ S L + + +L + +A+ ++ L + R+ + L+ R
Sbjct 3 RRLTGVESLLAPGLLDYEMISALFGMRRGGKLTEREMGKAVADYQLLPLVRHETLVLWRR 62
Query 80 IWEIRANLSAYDASYVALAEALNCALVTADLRLSDTGQAQCPITV 124
+ E+ LSAYDA YVALAE L L+T+D R++ G A C I V
Sbjct 63 VRELHHTLSAYDAQYVALAETLGLPLITSDARIARGGVATCTIEV 107
>gi|333025632|ref|ZP_08453696.1| putative PilT protein-like protein [Streptomyces sp. Tu6071]
gi|332745484|gb|EGJ75925.1| putative PilT protein-like protein [Streptomyces sp. Tu6071]
Length=102
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/98 (37%), Positives = 53/98 (55%), Gaps = 0/98 (0%)
Query 28 LHVPHLVDSEIASGLRRLAQRDRLGAADGRRALQTWRRLAVTRYPVVGLFERIWEIRANL 87
++ P L+D E A+ R L + ++ RA++ + R GL R+WE+R N
Sbjct 4 VYAPALIDLEFANVTRGLLRAGKITEHMADRAVRKLPSFPMRRVKHEGLLFRVWELRHNY 63
Query 88 SAYDASYVALAEALNCALVTADLRLSDTGQAQCPITVV 125
S YDASYVALAE L L+T D RL +CP+ ++
Sbjct 64 SPYDASYVALAEQLGATLLTGDARLQRGTGKRCPVELI 101
>gi|271964589|ref|YP_003338785.1| PilT protein domain-containing protein [Streptosporangium roseum
DSM 43021]
gi|270507764|gb|ACZ86042.1| PilT protein domain protein [Streptosporangium roseum DSM 43021]
Length=137
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/124 (38%), Positives = 68/124 (55%), Gaps = 9/124 (7%)
Query 2 IVVDASAALAALLN---DGQARQLIAAERLHVPHLVDSEIASGLRRLA----QRDRLGAA 54
+VVDAS L N D RQ +A ++H P L+D EIAS +R R+ A
Sbjct 3 LVVDASIVFRLLANVKGDDLLRQRLA-RKVHAPALIDVEIASVVRGHVVTGKPEVRISEA 61
Query 55 DGRRALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLS- 113
+ L+ + +L + R+P++ L R+ E+R NL+AYD YVALAE L ++T D + +
Sbjct 62 RAQIMLERYAQLKIVRHPMLPLQPRVLELRNNLTAYDGMYVALAELLGVPMLTDDAKFAG 121
Query 114 DTGQ 117
TG
Sbjct 122 STGH 125
>gi|152966078|ref|YP_001361862.1| PilT protein-like [Kineococcus radiotolerans SRS30216]
gi|151360595|gb|ABS03598.1| PilT protein-like [Kineococcus radiotolerans SRS30216]
Length=100
Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/101 (44%), Positives = 56/101 (56%), Gaps = 6/101 (5%)
Query 28 LHVPHLVDSEIASGLRRLAQRDRLGAADGRRALQTWRRL---AVTRYPVVGLFERIWEIR 84
L P ++D E+AS LRR A RL RRA W L + R L R WE+R
Sbjct 2 LTAPEVIDLEVASVLRRAAASGRLP---DRRADLAWNDLIDLPLRRAGHRPLLRRCWELR 58
Query 85 ANLSAYDASYVALAEALNCALVTADLRLSDTGQAQCPITVV 125
+++YDA+YVALAEAL+ LVTAD RLS C + V+
Sbjct 59 HTVTSYDAAYVALAEALDIVLVTADARLSRAPGITCEVEVL 99
>gi|50843515|ref|YP_056742.1| hypothetical protein PPA2073 [Propionibacterium acnes KPA171202]
gi|335052922|ref|ZP_08545781.1| PIN domain protein [Propionibacterium sp. 434-HC2]
gi|50841117|gb|AAT83784.1| conserved protein [Propionibacterium acnes KPA171202]
gi|315107867|gb|EFT79843.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL030PA1]
gi|333768546|gb|EGL45727.1| PIN domain protein [Propionibacterium sp. 434-HC2]
gi|335278469|gb|AEH30374.1| hypothetical protein TIB1ST10_10525 [Propionibacterium acnes
6609]
Length=129
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/114 (38%), Positives = 55/114 (49%), Gaps = 3/114 (2%)
Query 2 IVVDASAALAALLNDGQAR---QLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRR 58
+VVDAS L+ R Q E P + +EIA +R L+ + A+ R
Sbjct 3 LVVDASVLAEMLVGSTVGRAAWQQWGGEEFIAPQHLPAEIAHVVRNLSLGHLITDAEAMR 62
Query 59 ALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRL 112
L +R V YPV L WE+R N+SAYDA YV LA L L+T D RL
Sbjct 63 ILSDFRAFKVELYPVEPLMVDAWEMRHNVSAYDALYVVLARLLGVCLLTCDRRL 116
>gi|282854837|ref|ZP_06264171.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes J139]
gi|335051617|ref|ZP_08544531.1| PIN domain protein [Propionibacterium sp. 409-HC1]
gi|342213313|ref|ZP_08706038.1| PIN domain protein [Propionibacterium sp. CC003-HC2]
7 more sequence titles
gi|282581983|gb|EFB87366.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes J139]
gi|313813817|gb|EFS51531.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL025PA1]
gi|314924524|gb|EFS88355.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL001PA1]
gi|315102935|gb|EFT74911.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL050PA2]
gi|327335217|gb|EGE76927.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL097PA1]
gi|333766217|gb|EGL43529.1| PIN domain protein [Propionibacterium sp. 409-HC1]
gi|340768857|gb|EGR91382.1| PIN domain protein [Propionibacterium sp. CC003-HC2]
Length=129
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/114 (38%), Positives = 55/114 (49%), Gaps = 3/114 (2%)
Query 2 IVVDASAALAALLNDGQAR---QLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRR 58
+VVDAS L+ R Q E P + +EIA +R L+ + A+ R
Sbjct 3 LVVDASVLAEMLVGSTVGRAAWQQWGGEEFIAPQHLPAEIAHVVRNLSLGHLITDAEAMR 62
Query 59 ALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRL 112
L +R V YPV L WE+R N+SAYDA YV LA L L+T D RL
Sbjct 63 ILSDFRAFKVELYPVEPLMVDAWEMRHNVSAYDALYVVLARLLGACLLTCDRRL 116
>gi|313827108|gb|EFS64822.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL063PA1]
Length=129
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/114 (38%), Positives = 55/114 (49%), Gaps = 3/114 (2%)
Query 2 IVVDASAALAALLNDG---QARQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRR 58
+VVDAS L+ A Q E P + +EIA +R L+ + A+ R
Sbjct 3 LVVDASVLAEMLVGSTVGHAAWQQWGGEEFIAPQHLPAEIAHVVRNLSSGHLITDAEAMR 62
Query 59 ALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRL 112
L +R V YPV L WE+R N+SAYDA YV LA L L+T D RL
Sbjct 63 ILSDFRAFKVELYPVEPLMVDAWEMRHNVSAYDALYVVLARLLGACLLTCDRRL 116
>gi|313832495|gb|EFS70209.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL056PA1]
Length=129
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/114 (39%), Positives = 56/114 (50%), Gaps = 3/114 (2%)
Query 2 IVVDASAALAALLNDG---QARQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRR 58
+VVDAS L+ A Q E P + +EIA +R L+ + A+ R
Sbjct 3 LVVDASVLAEMLVGSTVGHAAWQQWGGEEFIAPQHLPAEIAHVVRNLSLGHLITDAEAMR 62
Query 59 ALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRL 112
L +R L V YPV L WE+R N+SAYDA YV LA L L+T D RL
Sbjct 63 ILSDFRALKVELYPVEPLMVDAWEMRHNVSAYDALYVVLARLLGACLLTCDRRL 116
>gi|284992067|ref|YP_003410621.1| PilT domain-containing protein [Geodermatophilus obscurus DSM
43160]
gi|284065312|gb|ADB76250.1| PilT domain-containing protein [Geodermatophilus obscurus DSM
43160]
Length=131
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/108 (38%), Positives = 54/108 (50%), Gaps = 0/108 (0%)
Query 15 NDGQARQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRRALQTWRRLAVTRYPVV 74
+ G AR L+ E L P + + ++ LRR RLG A R++V +
Sbjct 20 DGGWARALLRGEDLTAPTHMQIQASNVLRRAVLAGRLGVDAASLAHLDLTRMSVRSFGFD 79
Query 75 GLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTGQAQCPI 122
L RIWE+ ++AYDA+YVALAE L LVT D RL+ CP
Sbjct 80 PLATRIWELHPAVTAYDAAYVALAEELAVPLVTLDRRLARASGPTCPF 127
>gi|311896050|dbj|BAJ28458.1| hypothetical protein KSE_26460 [Kitasatospora setae KM-6054]
Length=134
Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/131 (36%), Positives = 63/131 (49%), Gaps = 5/131 (3%)
Query 1 MIVVDASAALAALLNDGQARQLIAAERLHVPHLVDSE-----IASGLRRLAQRDRLGAAD 55
MIVVDASA + +L + G A P V E + LR L +L A +
Sbjct 1 MIVVDASAVVLSLSDRGPRGDAARALLAADPEWVAPEHVVIEVMQSLRGLYLAKQLTAEE 60
Query 56 GRRALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDT 115
+ LA+ + V L RIWE++ NL+ DA+YVA+AE LVTADLRL
Sbjct 61 VAELTRRLPGLAIRKVEVAPLLGRIWELKDNLTPDDAAYVAVAELHGAPLVTADLRLMRA 120
Query 116 GQAQCPITVVP 126
+C I +P
Sbjct 121 SGPRCEIRGIP 131
>gi|314967266|gb|EFT11365.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL082PA2]
gi|314981768|gb|EFT25861.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL110PA3]
gi|315092528|gb|EFT64504.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL110PA4]
gi|315094771|gb|EFT66747.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL060PA1]
gi|327328620|gb|EGE70380.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL103PA1]
Length=129
Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/114 (38%), Positives = 55/114 (49%), Gaps = 3/114 (2%)
Query 2 IVVDASAALAALLNDGQAR---QLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRR 58
+VVDAS L+ R Q E P + +EIA +R L+ + A+ R
Sbjct 3 LVVDASVLAEMLVGSTVGRAAWQQWGGEEFIAPQHLLAEIAHVVRNLSLGHLITDAEAMR 62
Query 59 ALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRL 112
L +R V YPV L WE+R N+SAYDA YV LA L L+T D RL
Sbjct 63 ILSDFRAFKVELYPVEPLMVDAWEMRHNVSAYDALYVVLARLLGACLLTCDRRL 116
>gi|289426009|ref|ZP_06427756.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes SK187]
gi|289427948|ref|ZP_06429652.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes J165]
gi|295131584|ref|YP_003582247.1| PIN domain protein [Propionibacterium acnes SK137]
55 more sequence titles
gi|289153552|gb|EFD02266.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes SK187]
gi|289158831|gb|EFD07031.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes J165]
gi|291376345|gb|ADE00200.1| PIN domain protein [Propionibacterium acnes SK137]
gi|313763711|gb|EFS35075.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL013PA1]
gi|313771728|gb|EFS37694.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL074PA1]
gi|313793743|gb|EFS41774.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL110PA1]
gi|313803055|gb|EFS44263.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL110PA2]
gi|313808461|gb|EFS46928.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL087PA2]
gi|313810550|gb|EFS48264.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL083PA1]
gi|313816972|gb|EFS54686.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL059PA1]
gi|313818114|gb|EFS55828.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL046PA2]
gi|313820974|gb|EFS58688.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL036PA1]
gi|313823954|gb|EFS61668.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL036PA2]
gi|313829774|gb|EFS67488.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL063PA2]
gi|313831592|gb|EFS69306.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL007PA1]
gi|313839318|gb|EFS77032.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL086PA1]
gi|314916534|gb|EFS80365.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL005PA4]
gi|314918808|gb|EFS82639.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL050PA1]
gi|314921013|gb|EFS84844.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL050PA3]
gi|314926999|gb|EFS90830.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL036PA3]
gi|314932415|gb|EFS96246.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL067PA1]
gi|314956724|gb|EFT00976.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL027PA1]
gi|314959635|gb|EFT03737.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL002PA1]
gi|314961820|gb|EFT05921.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL002PA2]
gi|314964805|gb|EFT08905.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL082PA1]
gi|314968688|gb|EFT12786.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL037PA1]
gi|314974943|gb|EFT19038.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL053PA1]
gi|314977963|gb|EFT22057.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL045PA1]
gi|314979647|gb|EFT23741.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL072PA2]
gi|314984627|gb|EFT28719.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL005PA1]
gi|314988284|gb|EFT32375.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL005PA2]
gi|314990373|gb|EFT34464.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL005PA3]
gi|315079229|gb|EFT51232.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL053PA2]
gi|315082308|gb|EFT54284.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL078PA1]
gi|315083723|gb|EFT55699.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL027PA2]
gi|315087362|gb|EFT59338.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL002PA3]
gi|315089779|gb|EFT61755.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL072PA1]
gi|315095553|gb|EFT67529.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL038PA1]
gi|315100186|gb|EFT72162.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL059PA2]
gi|315102508|gb|EFT74484.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL046PA1]
gi|315109573|gb|EFT81549.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL030PA2]
gi|327326558|gb|EGE68346.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL096PA3]
gi|327332823|gb|EGE74555.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL096PA2]
gi|327447647|gb|EGE94301.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL043PA2]
gi|327448521|gb|EGE95175.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL043PA1]
gi|327449624|gb|EGE96278.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL013PA2]
gi|327455832|gb|EGF02487.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL087PA3]
gi|327456075|gb|EGF02730.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL092PA1]
gi|327457983|gb|EGF04638.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL083PA2]
gi|328757147|gb|EGF70763.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL087PA1]
gi|328757341|gb|EGF70957.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL020PA1]
gi|328757527|gb|EGF71143.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL025PA2]
gi|328762101|gb|EGF75606.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL099PA1]
gi|332676453|gb|AEE73269.1| hypothetical protein PAZ_c21460 [Propionibacterium acnes 266]
gi|340774022|gb|EGR96512.1| PIN domain protein [Propionibacterium acnes SK182]
Length=129
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/114 (38%), Positives = 55/114 (49%), Gaps = 3/114 (2%)
Query 2 IVVDASAALAALLNDG---QARQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRR 58
+VVDAS L+ A Q E P + +EIA +R L+ + A+ R
Sbjct 3 LVVDASVLAEMLVGSTVGHAAWQQWGGEEFIAPQHLPAEIAHVVRNLSLGHLITDAEAMR 62
Query 59 ALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRL 112
L +R V YPV L WE+R N+SAYDA YV LA L L+T D RL
Sbjct 63 ILSDFRAFKVELYPVEPLMVDAWEMRHNVSAYDALYVVLARLLGACLLTCDRRL 116
>gi|15608858|ref|NP_216236.1| hypothetical protein Rv1720c [Mycobacterium tuberculosis H37Rv]
gi|15841182|ref|NP_336219.1| hypothetical protein MT1761 [Mycobacterium tuberculosis CDC1551]
gi|31792908|ref|NP_855401.1| hypothetical protein Mb1749c [Mycobacterium bovis AF2122/97]
78 more sequence titles
Length=129
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/129 (32%), Positives = 66/129 (52%), Gaps = 5/129 (3%)
Query 1 MIVVDASAALAALLND----GQARQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADG 56
MIV+DASAA+ +L AR+L E +H P D E+ +R+ R + +G
Sbjct 1 MIVLDASAAVELMLTTPAGAAVARRL-RGETVHAPAHFDVEVIGAIRQAVVRQLISDHEG 59
Query 57 RRALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTG 116
+ + L V R+P+ +R +++R+ + D +YVALAE L L+T D RL+ +
Sbjct 60 LVVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSH 119
Query 117 QAQCPITVV 125
I +V
Sbjct 120 GHNAEIELV 128
>gi|333989975|ref|YP_004522589.1| PilT protein domain-containing protein [Mycobacterium sp. JDM601]
gi|333485943|gb|AEF35335.1| PilT protein domain protein [Mycobacterium sp. JDM601]
Length=67
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 44/62 (71%), Gaps = 1/62 (1%)
Query 65 RLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALN-CALVTADLRLSDTGQAQCPIT 123
RL +TR+P L RIWE+R NLSAYDA+YVALAE ++ AL+T D RL++ +C +
Sbjct 6 RLTLTRFPADWLRPRIWELRDNLSAYDATYVALAELVDATALLTTDARLANAPGPRCRVD 65
Query 124 VV 125
++
Sbjct 66 LL 67
>gi|337766707|emb|CCB75418.1| conserved protein of unknown function [Streptomyces cattleya
NRRL 8057]
Length=136
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 59/95 (63%), Gaps = 0/95 (0%)
Query 31 PHLVDSEIASGLRRLAQRDRLGAADGRRALQTWRRLAVTRYPVVGLFERIWEIRANLSAY 90
P LVD EI S L + + +L + +A+ ++ L + R+ + L++R+ + NLSAY
Sbjct 39 PTLVDYEIQSALLGMRRGGKLTEREVAKAIDAYQLLPLLRHETLFLWDRVQALHGNLSAY 98
Query 91 DASYVALAEALNCALVTADLRLSDTGQAQCPITVV 125
DA YVALAEAL L+T+D+R+ +G A+C I V
Sbjct 99 DAQYVALAEALAATLITSDVRIERSGAAKCDIEVF 133
>gi|315446137|ref|YP_004079016.1| nucleic acid-binding protein, contains PIN domain [Mycobacterium
sp. Spyr1]
gi|315264440|gb|ADU01182.1| predicted nucleic acid-binding protein, contains PIN domain [Mycobacterium
sp. Spyr1]
Length=133
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/129 (42%), Positives = 68/129 (53%), Gaps = 4/129 (3%)
Query 1 MIVVDASAALAALLNDGQ----ARQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADG 56
MIVVDAS AL +DG ARQ + E L P L+D E+AS RR + A
Sbjct 1 MIVVDASVLAVALGDDGADGRLARQRLTGEALAAPELIDLEVASVWRRHVAAKLMTARRA 60
Query 57 RRALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTG 116
A+ L + R L ERIW +R ++ YDA+Y ALAEAL LVTAD+RL+
Sbjct 61 DAAVSDLADLPLRRCSHRPLLERIWVLRRTVTPYDAAYAALAEALEVVLVTADVRLARAP 120
Query 117 QAQCPITVV 125
C + V+
Sbjct 121 GLACDVEVI 129
>gi|340626727|ref|YP_004745179.1| hypothetical protein MCAN_17311 [Mycobacterium canettii CIPT
140010059]
gi|340004917|emb|CCC44063.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=129
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/129 (32%), Positives = 65/129 (51%), Gaps = 5/129 (3%)
Query 1 MIVVDASAALAALL----NDGQARQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADG 56
MIV+DASAA+ +L AR+L E +H P D E+ + + R + +G
Sbjct 1 MIVLDASAAVELMLATPAGAAVARRL-RGETVHAPAHFDVEVIGAIHQAVVRQLISDHEG 59
Query 57 RRALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTG 116
+ + L V R+P+ +R +++R+ + D +YVALAE L L+T D RL+ +
Sbjct 60 LVVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSH 119
Query 117 QAQCPITVV 125
I +V
Sbjct 120 GHTAEIELV 128
>gi|240170953|ref|ZP_04749612.1| hypothetical protein MkanA1_16703 [Mycobacterium kansasii ATCC
12478]
Length=129
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/129 (33%), Positives = 65/129 (51%), Gaps = 5/129 (3%)
Query 1 MIVVDASAALAALL----NDGQARQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADG 56
MIV+DASAA+ +L AR+L E +H P +D E+ +RR R + +G
Sbjct 1 MIVLDASAAVELVLATPPGAAVARRL-RDETVHAPAHIDVEVIGAIRRAVVRRLISDHEG 59
Query 57 RRALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTG 116
A+ + L + R+P+ +R +++R DA YVALAE L+T D RL+ +
Sbjct 60 VVAVADFLSLQIRRWPIKPFAQRAYQLRTTHIVADAVYVALAEGFGVRLITCDGRLAQSH 119
Query 117 QAQCPITVV 125
I +V
Sbjct 120 GHDAEIELV 128
>gi|330465116|ref|YP_004402859.1| toxin [Verrucosispora maris AB-18-032]
gi|328808087|gb|AEB42259.1| toxin [Verrucosispora maris AB-18-032]
Length=138
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/127 (38%), Positives = 66/127 (52%), Gaps = 5/127 (3%)
Query 1 MIVVDASAALAALLNDGQARQLIAAERLHVPHLVDS-----EIASGLRRLAQRDRLGAAD 55
+IVVDAS AL++DG AE PH E+ S +R +LG A
Sbjct 6 VIVVDASVLADALVDDGPVGDAARAELTGDPHWAAPSHLLIEVMSVIRGKVLGGKLGLAR 65
Query 56 GRRALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDT 115
+ A+ T L + V L +R+W++R N++AYDA+Y+A AE L C LVT D RL+
Sbjct 66 AQEAIDTLPSLVIDEVGVATLLDRMWQLRGNVTAYDAAYIAAAELLACPLVTGDGRLAKA 125
Query 116 GQAQCPI 122
+C I
Sbjct 126 NGVRCEI 132
>gi|313836325|gb|EFS74039.1| toxin-antitoxin system, toxin component, PIN domain protein [Propionibacterium
acnes HL037PA2]
gi|314928789|gb|EFS92620.1| toxin-antitoxin system, toxin component, PIN domain protein [Propionibacterium
acnes HL044PA1]
gi|314971175|gb|EFT15273.1| toxin-antitoxin system, toxin component, PIN domain protein [Propionibacterium
acnes HL037PA3]
gi|328906462|gb|EGG26237.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
humerusii P08]
Length=197
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/94 (39%), Positives = 47/94 (50%), Gaps = 0/94 (0%)
Query 19 ARQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRRALQTWRRLAVTRYPVVGLFE 78
A Q E P + +EIA +R L+ + A+ + L +R V YPV L
Sbjct 23 AWQQWGGEEFIAPQHLSAEIAHVVRNLSLGQLITDAEAMQILSDFRAFKVELYPVEPLMV 82
Query 79 RIWEIRANLSAYDASYVALAEALNCALVTADLRL 112
WE+R N+SAYDA YV LA L L+T D RL
Sbjct 83 DAWEMRHNVSAYDALYVVLARLLGACLLTRDHRL 116
>gi|326903335|gb|EGE50268.1| toxin [Mycobacterium tuberculosis W-148]
Length=129
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/129 (32%), Positives = 65/129 (51%), Gaps = 5/129 (3%)
Query 1 MIVVDASAALAALLND----GQARQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADG 56
MIV+DASAA+ +L AR+L E + P D E+ +R+ R + +G
Sbjct 1 MIVLDASAAVELMLTTPAGAAVARRL-RGETVRAPAHFDVEVIGAIRQAVVRQLISDHEG 59
Query 57 RRALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTG 116
+ + L V R+P+ +R +++R+ + D +YVALAE L L+T D RL+ +
Sbjct 60 LVVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSH 119
Query 117 QAQCPITVV 125
I +V
Sbjct 120 GHNAEIELV 128
>gi|336177502|ref|YP_004582877.1| PilT protein domain-containing protein [Frankia symbiont of Datisca
glomerata]
gi|334858482|gb|AEH08956.1| PilT protein domain protein [Frankia symbiont of Datisca glomerata]
Length=131
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/130 (34%), Positives = 62/130 (48%), Gaps = 5/130 (3%)
Query 1 MIVVDASAALAALLNDGQARQLIAAERLH-----VPHLVDSEIASGLRRLAQRDRLGAAD 55
MIVVDAS AL+ + Q H P E+ S + L ++
Sbjct 1 MIVVDASVLANALVYADERGQRARVALGHDTEWAAPEHWMVEVFSVMHGLTLGKKISEER 60
Query 56 GRRALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDT 115
R A+ L V + L R+W++R+ +S YDA+YVALAEA + ALVT+D RL+
Sbjct 61 ARSAIARLPHLGVDHVRIDALLPRMWQLRSGISGYDAAYVALAEARDLALVTSDSRLARA 120
Query 116 GQAQCPITVV 125
C + +V
Sbjct 121 AMPFCAVRLV 130
>gi|145225776|ref|YP_001136454.1| PilT domain-containing protein [Mycobacterium gilvum PYR-GCK]
gi|145218262|gb|ABP47666.1| PilT protein domain protein [Mycobacterium gilvum PYR-GCK]
Length=155
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/129 (40%), Positives = 67/129 (52%), Gaps = 4/129 (3%)
Query 1 MIVVDASAALAALLNDG----QARQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADG 56
+IVVDAS AL +DG +ARQ + E L P L+D E+AS RR + A
Sbjct 23 VIVVDASVLAVALGDDGADGRRARQRLTGEALAAPELIDLEVASVWRRHVAAKLMTARRA 82
Query 57 RRALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTG 116
+ L + R L ERIW +R ++ YDA+Y ALAEAL LVTAD RL+
Sbjct 83 DAGVSDLEDLPLRRCSHRPLLERIWALRRTVTPYDAAYAALAEALEVVLVTADARLARAP 142
Query 117 QAQCPITVV 125
C + V+
Sbjct 143 GLACDVEVI 151
>gi|256371478|ref|YP_003109302.1| PilT protein domain-containing protein [Acidimicrobium ferrooxidans
DSM 10331]
gi|256008062|gb|ACU53629.1| PilT protein domain protein [Acidimicrobium ferrooxidans DSM
10331]
Length=146
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/113 (40%), Positives = 58/113 (52%), Gaps = 3/113 (2%)
Query 3 VVDASAALAALLND--GQA-RQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRRA 59
VVDASA + LL++ G+A R+ IA LH P VD+E+ S L RL + D L A
Sbjct 23 VVDASALVDLLLDNELGRAVRRRIAGHALHAPAHVDAEVLSALGRLHRADSLDAGTVEVK 82
Query 60 LQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRL 112
L+ + R+PV L W R L DA Y+ LA + LVT D RL
Sbjct 83 LRELAAAPIERHPVHDLLLGTWARRQELRLVDAIYIELAVSRGVPLVTTDRRL 135
>gi|218295256|ref|ZP_03496092.1| PilT protein domain protein [Thermus aquaticus Y51MC23]
gi|218244459|gb|EED10984.1| PilT protein domain protein [Thermus aquaticus Y51MC23]
Length=132
Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/127 (34%), Positives = 65/127 (52%), Gaps = 9/127 (7%)
Query 2 IVVDASAALAALLNDGQARQ---LIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRR 58
+V+DASAA LL RQ L+ +RL P L+D+E+ + +R+ RL +
Sbjct 4 LVLDASAAAEYLLRTPLGRQVAALVEGKRLFAPALLDAEVLAVVRKATLSGRLSPTRAQE 63
Query 59 ALQ---TWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDT 115
AL+ +W V P L + +R L+AYDA YVALA+ L+ ++TAD L+
Sbjct 64 ALEDLFSWPLFRVDHGP---LLLPAFALRDRLTAYDALYVALAQRLSAPILTADGPLARA 120
Query 116 GQAQCPI 122
P+
Sbjct 121 PGLPVPL 127
>gi|134102274|ref|YP_001107935.1| hypothetical protein SACE_5826 [Saccharopolyspora erythraea NRRL
2338]
gi|291003763|ref|ZP_06561736.1| hypothetical protein SeryN2_04507 [Saccharopolyspora erythraea
NRRL 2338]
gi|133914897|emb|CAM05010.1| hypothetical protein SACE_5826 [Saccharopolyspora erythraea NRRL
2338]
Length=129
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/128 (33%), Positives = 68/128 (54%), Gaps = 6/128 (4%)
Query 3 VVDASAALAALLNDGQAR---QLIAAE--RLHVPHLVDSEIASGLRRLAQRDRLGAADGR 57
+VDASA L LL +A +LI++ + HVP +D E+ + LR+ + L +A+
Sbjct 1 MVDASAVLDLLLQLRRAHRIGELISSPFAQSHVPDTIDREVINVLRKRERSGSLTSAEAE 60
Query 58 RALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTGQ 117
+ L + R+W +R+ S DA YV+LAE+L+ L+T+D +L+ G
Sbjct 61 TVFGEFLLLPFEVHDARPFAPRVWGLRSVCSVGDAYYVSLAESLDATLITSDEKLA-RGV 119
Query 118 AQCPITVV 125
AQ + V+
Sbjct 120 AQLDLDVI 127
>gi|84494959|ref|ZP_00994078.1| hypothetical protein JNB_09174 [Janibacter sp. HTCC2649]
gi|84384452|gb|EAQ00332.1| hypothetical protein JNB_09174 [Janibacter sp. HTCC2649]
Length=131
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/128 (37%), Positives = 66/128 (52%), Gaps = 4/128 (3%)
Query 1 MIVVDASAAL-AALLNDG--QARQLIAAE-RLHVPHLVDSEIASGLRRLAQRDRLGAADG 56
MIV+DASA + LL+ G Q R IA + +L P L+ E++S L RL + + +
Sbjct 1 MIVLDASALVDFLLLSPGWEQIRGHIAGDVQLAAPDLLSLEVSSTLWRLECAGTITSEES 60
Query 57 RRALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTG 116
L RLA+ R P++ L W +R +L DA YVALA L L+T D +L+
Sbjct 61 ASCLTQAGRLAIERVPMLDLTADAWAMRHSLRISDAYYVALARQLRWPLLTTDQKLARGA 120
Query 117 QAQCPITV 124
ITV
Sbjct 121 TGISVITV 128
>gi|336117185|ref|YP_004571952.1| hypothetical protein MLP_15350 [Microlunatus phosphovorus NM-1]
gi|334684964|dbj|BAK34549.1| hypothetical protein MLP_15350 [Microlunatus phosphovorus NM-1]
Length=50
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/47 (54%), Positives = 34/47 (73%), Gaps = 0/47 (0%)
Query 79 RIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTGQAQCPITVV 125
R +E+R+N++ YDA YVALAEAL LVTAD RL++ +C I V+
Sbjct 3 RAFELRSNVTPYDACYVALAEALESELVTADRRLANASGPRCTIRVI 49
>gi|15607689|ref|NP_215063.1| hypothetical protein Rv0549c [Mycobacterium tuberculosis H37Rv]
gi|15839946|ref|NP_334983.1| hypothetical protein MT0574 [Mycobacterium tuberculosis CDC1551]
gi|148660318|ref|YP_001281841.1| hypothetical protein MRA_0556 [Mycobacterium tuberculosis H37Ra]
61 more sequence titles
Length=137
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/116 (37%), Positives = 57/116 (50%), Gaps = 4/116 (3%)
Query 2 IVVDASAA--LAALLND--GQARQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGR 57
+VVDASA L A +D R +A +H P D+E+ S L R+ + L A
Sbjct 12 VVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD 71
Query 58 RALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLS 113
AL+ R++ VTR+ + L W R L DA YV LAE L+T D RL+
Sbjct 72 AALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLA 127
Lambda K H
0.324 0.134 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 129319095676
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40