BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0960

Length=127
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15608100|ref|NP_215475.1|  hypothetical protein Rv0960 [Mycoba...   249    7e-65
gi|289753016|ref|ZP_06512394.1|  conserved hypothetical protein [...   246    7e-64
gi|340625973|ref|YP_004744425.1|  hypothetical protein MCAN_09641...   224    4e-57
gi|284992100|ref|YP_003410654.1|  PilT protein domain-containing ...  99.0    2e-19
gi|87124166|ref|ZP_01080016.1|  hypothetical protein RS9917_11161...  92.4    2e-17
gi|217979588|ref|YP_002363735.1|  PilT protein domain-containing ...  91.3    4e-17
gi|297625029|ref|YP_003706463.1|  PilT domain-containing protein ...  90.9    6e-17
gi|297161843|gb|ADI11555.1|  hypothetical protein SBI_08437 [Stre...  88.2    3e-16
gi|336178825|ref|YP_004584200.1|  PilT protein domain-containing ...  87.8    5e-16
gi|333990432|ref|YP_004523046.1|  hypothetical protein JDM601_179...  84.3    5e-15
gi|86740207|ref|YP_480607.1|  PilT protein-like protein [Frankia ...  84.3    6e-15
gi|87300649|ref|ZP_01083491.1|  hypothetical protein WH5701_04355...  80.9    7e-14
gi|240168730|ref|ZP_04747389.1|  PilT domain-containing protein [...  80.1    1e-13
gi|336179019|ref|YP_004584394.1|  PilT protein domain-containing ...  77.4    6e-13
gi|269957933|ref|YP_003327722.1|  PilT protein domain-containing ...  75.5    2e-12
gi|312195768|ref|YP_004015829.1|  PilT protein domain protein [Fr...  71.6    4e-11
gi|288917657|ref|ZP_06412020.1|  PilT protein domain protein [Fra...  68.2    4e-10
gi|15607207|ref|NP_214579.1|  hypothetical protein Rv0065 [Mycoba...  67.8    4e-10
gi|340625099|ref|YP_004743551.1|  hypothetical protein MCAN_00651...  67.8    5e-10
gi|289747834|ref|ZP_06507212.1|  conserved hypothetical protein [...  67.8    5e-10
gi|336118169|ref|YP_004572938.1|  hypothetical protein MLP_25210 ...  66.6    1e-09
gi|111224206|ref|YP_715000.1|  hypothetical protein FRAAL4817 [Fr...  66.6    1e-09
gi|333025632|ref|ZP_08453696.1|  putative PilT protein-like prote...  66.6    1e-09
gi|271964589|ref|YP_003338785.1|  PilT protein domain-containing ...  65.9    2e-09
gi|152966078|ref|YP_001361862.1|  PilT protein-like [Kineococcus ...  63.9    7e-09
gi|50843515|ref|YP_056742.1|  hypothetical protein PPA2073 [Propi...  61.6    4e-08
gi|282854837|ref|ZP_06264171.1|  toxin-antitoxin system, toxin co...  61.6    4e-08
gi|313827108|gb|EFS64822.1|  toxin-antitoxin system, toxin compon...  61.2    5e-08
gi|313832495|gb|EFS70209.1|  toxin-antitoxin system, toxin compon...  61.2    5e-08
gi|284992067|ref|YP_003410621.1|  PilT domain-containing protein ...  60.8    6e-08
gi|311896050|dbj|BAJ28458.1|  hypothetical protein KSE_26460 [Kit...  60.5    8e-08
gi|314967266|gb|EFT11365.1|  toxin-antitoxin system, toxin compon...  60.5    9e-08
gi|289426009|ref|ZP_06427756.1|  toxin-antitoxin system, toxin co...  60.1    1e-07
gi|15608858|ref|NP_216236.1|  hypothetical protein Rv1720c [Mycob...  60.1    1e-07
gi|333989975|ref|YP_004522589.1|  PilT protein domain-containing ...  59.3    2e-07
gi|337766707|emb|CCB75418.1|  conserved protein of unknown functi...  58.2    4e-07
gi|315446137|ref|YP_004079016.1|  nucleic acid-binding protein, c...  57.8    5e-07
gi|340626727|ref|YP_004745179.1|  hypothetical protein MCAN_17311...  57.0    8e-07
gi|240170953|ref|ZP_04749612.1|  hypothetical protein MkanA1_1670...  57.0    8e-07
gi|330465116|ref|YP_004402859.1|  toxin [Verrucosispora maris AB-...  57.0    1e-06
gi|313836325|gb|EFS74039.1|  toxin-antitoxin system, toxin compon...  56.2    1e-06
gi|326903335|gb|EGE50268.1|  toxin [Mycobacterium tuberculosis W-...  56.2    2e-06
gi|336177502|ref|YP_004582877.1|  PilT protein domain-containing ...  56.2    2e-06
gi|145225776|ref|YP_001136454.1|  PilT domain-containing protein ...  55.5    3e-06
gi|256371478|ref|YP_003109302.1|  PilT protein domain-containing ...  55.5    3e-06
gi|218295256|ref|ZP_03496092.1|  PilT protein domain protein [The...  54.7    5e-06
gi|134102274|ref|YP_001107935.1|  hypothetical protein SACE_5826 ...  53.5    1e-05
gi|84494959|ref|ZP_00994078.1|  hypothetical protein JNB_09174 [J...  53.1    1e-05
gi|336117185|ref|YP_004571952.1|  hypothetical protein MLP_15350 ...  52.0    3e-05
gi|15607689|ref|NP_215063.1|  hypothetical protein Rv0549c [Mycob...  48.9    2e-04


>gi|15608100|ref|NP_215475.1| hypothetical protein Rv0960 [Mycobacterium tuberculosis H37Rv]
 gi|15840385|ref|NP_335422.1| hypothetical protein MT0988 [Mycobacterium tuberculosis CDC1551]
 gi|31792149|ref|NP_854642.1| hypothetical protein Mb0985 [Mycobacterium bovis AF2122/97]
 78 more sequence titles
 Length=127

 Score =  249 bits (637),  Expect = 7e-65, Method: Compositional matrix adjust.
 Identities = 127/127 (100%), Positives = 127/127 (100%), Gaps = 0/127 (0%)

Query  1    MIVVDASAALAALLNDGQARQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRRAL  60
            MIVVDASAALAALLNDGQARQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRRAL
Sbjct  1    MIVVDASAALAALLNDGQARQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRRAL  60

Query  61   QTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTGQAQC  120
            QTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTGQAQC
Sbjct  61   QTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTGQAQC  120

Query  121  PITVVPR  127
            PITVVPR
Sbjct  121  PITVVPR  127


>gi|289753016|ref|ZP_06512394.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289693603|gb|EFD61032.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
Length=127

 Score =  246 bits (629),  Expect = 7e-64, Method: Compositional matrix adjust.
 Identities = 126/127 (99%), Positives = 126/127 (99%), Gaps = 0/127 (0%)

Query  1    MIVVDASAALAALLNDGQARQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRRAL  60
            MIVVDASAALAALLNDGQARQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGR AL
Sbjct  1    MIVVDASAALAALLNDGQARQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRWAL  60

Query  61   QTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTGQAQC  120
            QTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTGQAQC
Sbjct  61   QTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTGQAQC  120

Query  121  PITVVPR  127
            PITVVPR
Sbjct  121  PITVVPR  127


>gi|340625973|ref|YP_004744425.1| hypothetical protein MCAN_09641 [Mycobacterium canettii CIPT 
140010059]
 gi|340004163|emb|CCC43301.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=127

 Score =  224 bits (570),  Expect = 4e-57, Method: Compositional matrix adjust.
 Identities = 122/127 (97%), Positives = 124/127 (98%), Gaps = 0/127 (0%)

Query  1    MIVVDASAALAALLNDGQARQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRRAL  60
            MIVVDASAALAALLNDGQARQLIAAERLHVPHLVDSEIASGLRRL QRDRLGAADG RAL
Sbjct  1    MIVVDASAALAALLNDGQARQLIAAERLHVPHLVDSEIASGLRRLVQRDRLGAADGWRAL  60

Query  61   QTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTGQAQC  120
            QTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNC LVTADLRLS+TGQA+C
Sbjct  61   QTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCELVTADLRLSNTGQARC  120

Query  121  PITVVPR  127
            PITVVPR
Sbjct  121  PITVVPR  127


>gi|284992100|ref|YP_003410654.1| PilT protein domain-containing protein [Geodermatophilus obscurus 
DSM 43160]
 gi|284065345|gb|ADB76283.1| PilT protein domain protein [Geodermatophilus obscurus DSM 43160]
Length=130

 Score = 99.0 bits (245),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 59/129 (46%), Positives = 78/129 (61%), Gaps = 4/129 (3%)

Query  1    MIVVDASAALAALLNDGQ----ARQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADG  56
            MIVVDAS  +AALL  GQ    AR+++  +  H PHL+D E+ S +RR A  DRLG    
Sbjct  1    MIVVDASTVVAALLAAGQGGDDAREVMLGDDAHAPHLLDVEVLSAVRRHALSDRLGDTAA  60

Query  57   RRALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTG  116
            R A+   R L V R+    L +R  ++R +++AYD  YVALAE L   LVT D RLS   
Sbjct  61   RDAVTAMRDLPVIRHGHDLLLDRALQLRDSITAYDGVYVALAEILGATLVTGDRRLSHAP  120

Query  117  QAQCPITVV  125
              +CP++VV
Sbjct  121  GLRCPVSVV  129


>gi|87124166|ref|ZP_01080016.1| hypothetical protein RS9917_11161 [Synechococcus sp. RS9917]
 gi|86168735|gb|EAQ69992.1| hypothetical protein RS9917_11161 [Synechococcus sp. RS9917]
Length=127

 Score = 92.4 bits (228),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 60/125 (48%), Positives = 78/125 (63%), Gaps = 0/125 (0%)

Query  1    MIVVDASAALAALLNDGQARQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRRAL  60
            M+VVDAS  + ALL DG AR  +A   L  P L+D+E+ S LRRL   +RLG     +AL
Sbjct  1    MVVVDASVLVDALLLDGAARARLAEANLQAPELIDAELLSVLRRLVLAERLGEQHALQAL  60

Query  61   QTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTGQAQC  120
             T +RL + R+    L+ R WE+R NLSAYDA YVALAE L   L+TAD R +     +C
Sbjct  61   ATSQRLGLRRHTSRHLWPRAWELRTNLSAYDAIYVALAEQLGTTLLTADARAARAPGLRC  120

Query  121  PITVV  125
            P+ V+
Sbjct  121  PVEVL  125


>gi|217979588|ref|YP_002363735.1| PilT protein domain-containing protein [Methylocella silvestris 
BL2]
 gi|217504964|gb|ACK52373.1| PilT protein domain protein [Methylocella silvestris BL2]
Length=130

 Score = 91.3 bits (225),  Expect = 4e-17, Method: Compositional matrix adjust.
 Identities = 60/130 (47%), Positives = 75/130 (58%), Gaps = 5/130 (3%)

Query  1    MIVVDASAALAALLNDGQA-----RQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAAD  55
            MIVVDASA L ALL    A     R   A + LH PHL+D E+A  +RR A    +  A 
Sbjct  1    MIVVDASALLEALLRTPSAKTVEDRLFAAGQTLHAPHLLDVEVAQVIRRYALSGEIDRAR  60

Query  56   GRRALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDT  115
            G  AL     L + RYP   L  RIW++R NL+AYDA+YVALAEAL+  L+T D RL+  
Sbjct  61   GGLALADLADLPLRRYPHDFLLPRIWDLRNNLTAYDAAYVALAEALDAPLLTRDRRLAAA  120

Query  116  GQAQCPITVV  125
               +  I +V
Sbjct  121  AGHRARIELV  130


>gi|297625029|ref|YP_003706463.1| PilT domain-containing protein [Truepera radiovictrix DSM 17093]
 gi|297166209|gb|ADI15920.1| PilT protein domain protein [Truepera radiovictrix DSM 17093]
Length=134

 Score = 90.9 bits (224),  Expect = 6e-17, Method: Compositional matrix adjust.
 Identities = 55/118 (47%), Positives = 70/118 (60%), Gaps = 5/118 (4%)

Query  1    MIVVDASAALAALLNDGQA-----RQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAAD  55
            MIV+DASA ++ LL    A      +++ A  LHVP L D E+   LRR  ++  +  A 
Sbjct  1    MIVLDASAGVSFLLRIEPAYAPLRERVLRAGTLHVPQLFDLEVLHALRRYERQRFISPAR  60

Query  56   GRRALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLS  113
              RA    R L   R+P V L ER+WE+RANLSAYDA+YVALAE L   L+T D RL 
Sbjct  61   AERAFARLRELRCERHPHVPLAERVWELRANLSAYDATYVALAEILEAPLITLDARLG  118


>gi|297161843|gb|ADI11555.1| hypothetical protein SBI_08437 [Streptomyces bingchenggensis 
BCW-1]
Length=139

 Score = 88.2 bits (217),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 54/132 (41%), Positives = 77/132 (59%), Gaps = 10/132 (7%)

Query  1    MIVVDASAALAALLNDGQARQLI-----AAERLHVPHLVDSEIASGLRRLAQ-----RDR  50
            MIVVD SA +  L ++G    L+       +RL  PHL+D EI S L  LA+       +
Sbjct  1    MIVVDCSALIFFLSDEGPTGHLVRERVAKEDRLAAPHLIDYEIMSALLGLARGRRGGEPK  60

Query  51   LGAADGRRALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADL  110
            L     R+A+ T+R LA+ R+  + L+ER+  + +NLS YDA YVALAE L   L+T+D 
Sbjct  61   LSEKQLRKAVATYRDLAIDRHETLILWERVKGLSSNLSVYDAQYVALAEGLGLPLITSDA  120

Query  111  RLSDTGQAQCPI  122
            R+  +G A+C I
Sbjct  121  RIDRSGVARCEI  132


>gi|336178825|ref|YP_004584200.1| PilT protein domain-containing protein [Frankia symbiont of Datisca 
glomerata]
 gi|334859805|gb|AEH10279.1| PilT protein domain protein [Frankia symbiont of Datisca glomerata]
Length=133

 Score = 87.8 bits (216),  Expect = 5e-16, Method: Compositional matrix adjust.
 Identities = 51/127 (41%), Positives = 73/127 (58%), Gaps = 4/127 (3%)

Query  3    VVDASAALAALL---NDGQARQLIAAER-LHVPHLVDSEIASGLRRLAQRDRLGAADGRR  58
            VVD S  +  L     D   RQ ++A R LH PH +D E+AS +R LA   ++    G +
Sbjct  6    VVDCSLVIDVLSVRNGDEVLRQRLSAPRTLHAPHHLDVEVASTVRGLAAGKKITDHRGEQ  65

Query  59   ALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTGQA  118
             L  + RL +TR+PV     R+WE+R NL AYDA+Y+ALAEAL C L+T D ++ +    
Sbjct  66   MLADYARLRITRHPVWPYHPRLWELRHNLGAYDAAYIALAEALGCELLTGDTKIKNAAGH  125

Query  119  QCPITVV  125
            +  + V 
Sbjct  126  RATVIVT  132


>gi|333990432|ref|YP_004523046.1| hypothetical protein JDM601_1792 [Mycobacterium sp. JDM601]
 gi|333486400|gb|AEF35792.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=129

 Score = 84.3 bits (207),  Expect = 5e-15, Method: Compositional matrix adjust.
 Identities = 59/128 (47%), Positives = 78/128 (61%), Gaps = 4/128 (3%)

Query  1    MIVVDASAALAALLN-DG--QARQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGR  57
            MIVVDA+A + AL   DG  + R  +A E LH P L+D E+ S LR L +  +L AA   
Sbjct  1    MIVVDAAALVDALTGVDGTDELRSELADEELHAPALLDFEVVSALRGLTRGGQLSAARAH  60

Query  58   RALQTWRRLAVTRYP-VVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTG  116
             AL  +  LA+ R+P    L  R + +R NL+AYDA+YVALAEAL CA++T D RL+ +G
Sbjct  61   DALADFDALAIRRWPGSAELRLRAFTLRDNLTAYDAAYVALAEALECAVLTRDRRLARSG  120

Query  117  QAQCPITV  124
                 I V
Sbjct  121  GHSVEIRV  128


>gi|86740207|ref|YP_480607.1| PilT protein-like protein [Frankia sp. CcI3]
 gi|86567069|gb|ABD10878.1| PilT protein-like [Frankia sp. CcI3]
Length=133

 Score = 84.3 bits (207),  Expect = 6e-15, Method: Compositional matrix adjust.
 Identities = 52/126 (42%), Positives = 70/126 (56%), Gaps = 4/126 (3%)

Query  1    MIVVDASAALAALLNDGQA----RQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADG  56
            MIV+D SA +  L+         R L   ER+  PH VD E AS LR LA+  +L   + 
Sbjct  1    MIVLDTSALVEFLVGTDDVADVVRALATRERIAAPHAVDLECASTLRGLARGGKLPEGEA  60

Query  57   RRALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTG  116
             RAL+   R+ + RY    L  RIWE+R N+  YDA+Y+ALAE LN  LVTA+ +L    
Sbjct  61   SRALELLGRMNLRRYGHAPLLPRIWELRHNMWPYDAAYIALAETLNADLVTANRKLDRVP  120

Query  117  QAQCPI  122
              +C +
Sbjct  121  GLRCTV  126


>gi|87300649|ref|ZP_01083491.1| hypothetical protein WH5701_04355 [Synechococcus sp. WH 5701]
 gi|87284520|gb|EAQ76472.1| hypothetical protein WH5701_04355 [Synechococcus sp. WH 5701]
Length=127

 Score = 80.9 bits (198),  Expect = 7e-14, Method: Compositional matrix adjust.
 Identities = 55/125 (44%), Positives = 75/125 (60%), Gaps = 0/125 (0%)

Query  1    MIVVDASAALAALLNDGQARQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRRAL  60
            M+VVDAS  + ALL  G AR  +A   L  P L+D+E+ S LRRL   D+L      +AL
Sbjct  1    MVVVDASVLVDALLIQGAARDRLAEANLQAPDLIDAELLSVLRRLVLADQLAEQHALQAL  60

Query  61   QTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTGQAQC  120
             T +RL + R+    L+ R WE+R+NL+AYDA YVALAE L   L+T D R +     +C
Sbjct  61   ATAQRLGLRRHVSRHLWPRAWELRSNLTAYDALYVALAEELGATLLTGDSRAARAPGLRC  120

Query  121  PITVV  125
             + V+
Sbjct  121  HVEVM  125


>gi|240168730|ref|ZP_04747389.1| PilT domain-containing protein [Mycobacterium kansasii ATCC 12478]
Length=162

 Score = 80.1 bits (196),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 55/129 (43%), Positives = 70/129 (55%), Gaps = 4/129 (3%)

Query  1    MIVVDASAALAALLNDGQ----ARQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADG  56
            +IVVDAS    AL +D      AR+ +A E L  P L+D E+ S  RR     R+ A   
Sbjct  28   VIVVDASVLAVALGDDASDGRLARERLADETLAAPELIDLEVVSVWRRQVAAKRMPARRA  87

Query  57   RRALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTG  116
              A+     L + R     L  R+WE++  L+AYDA+YVALAEAL+  LVTAD RLS   
Sbjct  88   ASAVADLTNLPLRRSSHQPLLHRVWELQHVLTAYDAAYVALAEALDIVLVTADARLSRAS  147

Query  117  QAQCPITVV  125
               C I VV
Sbjct  148  GTHCEIEVV  156


>gi|336179019|ref|YP_004584394.1| PilT protein domain-containing protein [Frankia symbiont of Datisca 
glomerata]
 gi|334859999|gb|AEH10473.1| PilT protein domain protein [Frankia symbiont of Datisca glomerata]
Length=135

 Score = 77.4 bits (189),  Expect = 6e-13, Method: Compositional matrix adjust.
 Identities = 46/127 (37%), Positives = 73/127 (58%), Gaps = 5/127 (3%)

Query  3    VVDASAALAALLNDGQA-----RQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGR  57
            V+D SA +  L + G       R+L   E L  P L+D EI S L  + + +++   +  
Sbjct  7    VIDCSALVRTLTDQGAGGVAVRRRLAGLESLAAPGLLDYEIVSALFGMLRGNKITKRETT  66

Query  58   RALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTGQ  117
            +A+  ++ L + R+  + L+ R+ E+  NLSAYDA YVALAEAL   L+T+D R++ +G 
Sbjct  67   KAVADYQILPLVRHETLILWRRVHELHHNLSAYDAQYVALAEALGLPLITSDTRIARSGT  126

Query  118  AQCPITV  124
            A C + V
Sbjct  127  AACAVEV  133


>gi|269957933|ref|YP_003327722.1| PilT protein domain-containing protein [Xylanimonas cellulosilytica 
DSM 15894]
 gi|269306614|gb|ACZ32164.1| PilT protein domain protein [Xylanimonas cellulosilytica DSM 
15894]
Length=138

 Score = 75.5 bits (184),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 61/132 (47%), Positives = 72/132 (55%), Gaps = 9/132 (6%)

Query  2    IVVDASAALAALLNDGQARQLIAAE------RLHVPHLVDSEIASGLRRLAQRDRLGAAD  55
            +VVDASA LA  L    A Q I  E       LHVPHL   E  S LR L     L A  
Sbjct  5    LVVDASA-LAEYLVSSAAGQAIGEELRAHDGALHVPHLAVVETVSVLRGLVLGGFLTAER  63

Query  56   GRRALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDT  115
               AL     L   R+P   L  RIWE+R+NLSAYDA+YVALAEAL+  +VT D RL+  
Sbjct  64   AAAALADLADLPAERWPSEPLLPRIWELRSNLSAYDATYVALAEALDADVVTRDARLARG  123

Query  116  GQ--AQCPITVV  125
             Q  ++C + VV
Sbjct  124  AQTVSRCTVRVV  135


>gi|312195768|ref|YP_004015829.1| PilT protein domain protein [Frankia sp. EuI1c]
 gi|311227104|gb|ADP79959.1| PilT protein domain protein [Frankia sp. EuI1c]
Length=140

 Score = 71.6 bits (174),  Expect = 4e-11, Method: Compositional matrix adjust.
 Identities = 51/130 (40%), Positives = 68/130 (53%), Gaps = 4/130 (3%)

Query  2    IVVDASAALAALLNDGQARQLIA----AERLHVPHLVDSEIASGLRRLAQRDRLGAADGR  57
            +V+DASAA+A L + G A   +A       L  P L+  E A+ LRR      L  ++  
Sbjct  9    VVLDASAAVALLTDAGPAGTWVAKVVDGAALFAPELMPFEAANILRRHLLAGILDPSEAT  68

Query  58   RALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTGQ  117
             A      + V R     L +R W++RANL+AYDA+YVALAEAL   LVT D RL     
Sbjct  69   LAHADLLAMPVRRLAYASLADRAWDLRANLTAYDAAYVALAEALPAPLVTLDARLGRASG  128

Query  118  AQCPITVVPR  127
             +C + V P 
Sbjct  129  PRCEVLVCPE  138


>gi|288917657|ref|ZP_06412020.1| PilT protein domain protein [Frankia sp. EUN1f]
 gi|288350872|gb|EFC85086.1| PilT protein domain protein [Frankia sp. EUN1f]
Length=135

 Score = 68.2 bits (165),  Expect = 4e-10, Method: Compositional matrix adjust.
 Identities = 47/132 (36%), Positives = 72/132 (55%), Gaps = 7/132 (5%)

Query  1    MIVVDASAALAALLNDGQARQLIAAERL------HVPHLVDSEIASGLRRLAQRDRLGAA  54
            +IVVDAS  +  L  D   R+  A +RL      + P  +D E+ S LR LA+R    A 
Sbjct  3    LIVVDASVIVDLLAGDDSPRRKAARDRLTGGDVFYAPAHLDVEVISALRGLARRTSRLAE  62

Query  55   DGRRALQTWRRLAVTRYPVVG-LFERIWEIRANLSAYDASYVALAEALNCALVTADLRLS  113
                 + +  RL + R  + G   +R+WE+R  ++AYDA YVALAE ++ AL+T D + +
Sbjct  63   HTPSLIASLIRLPIRRERLNGPTAQRVWELRQTMTAYDAGYVALAEQIDAALLTCDAKYA  122

Query  114  DTGQAQCPITVV  125
             T   +C I ++
Sbjct  123  ATAGPRCAIELI  134


>gi|15607207|ref|NP_214579.1| hypothetical protein Rv0065 [Mycobacterium tuberculosis H37Rv]
 gi|15839444|ref|NP_334481.1| hypothetical protein MT0071 [Mycobacterium tuberculosis CDC1551]
 gi|31791242|ref|NP_853735.1| hypothetical protein Mb0066 [Mycobacterium bovis AF2122/97]
 75 more sequence titles
 Length=133

 Score = 67.8 bits (164),  Expect = 4e-10, Method: Compositional matrix adjust.
 Identities = 41/107 (39%), Positives = 55/107 (52%), Gaps = 1/107 (0%)

Query  20   RQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRRALQTWRRLAVTRYPVVG-LFE  78
            R L+     + PHL+D+E+   LRR    D +     R AL     L   RYP    L E
Sbjct  26   RGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARAALDALPYLIDNRYPHSPRLIE  85

Query  79   RIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTGQAQCPITVV  125
              W++R N++ YDA YVALA AL+  L+T D RL+      C I +V
Sbjct  86   YTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAPGLPCEIKLV  132


>gi|340625099|ref|YP_004743551.1| hypothetical protein MCAN_00651 [Mycobacterium canettii CIPT 
140010059]
 gi|340003289|emb|CCC42406.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=133

 Score = 67.8 bits (164),  Expect = 5e-10, Method: Compositional matrix adjust.
 Identities = 41/107 (39%), Positives = 55/107 (52%), Gaps = 1/107 (0%)

Query  20   RQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRRALQTWRRLAVTRYPVVG-LFE  78
            R L+     + PHL+D+E+   LRR    D +     R AL     L   RYP    L E
Sbjct  26   RGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARAALDALPYLIDNRYPHSPRLIE  85

Query  79   RIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTGQAQCPITVV  125
              W++R N++ YDA YVALA AL+  L+T D RL+      C I +V
Sbjct  86   YTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAPGLPCEIKLV  132


>gi|289747834|ref|ZP_06507212.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289688362|gb|EFD55850.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
Length=133

 Score = 67.8 bits (164),  Expect = 5e-10, Method: Compositional matrix adjust.
 Identities = 41/107 (39%), Positives = 55/107 (52%), Gaps = 1/107 (0%)

Query  20   RQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRRALQTWRRLAVTRYPVVG-LFE  78
            R L+     + PHL+D+E+   LRR    D +     R AL     L   RYP    L E
Sbjct  26   RGLLKEPISNAPHLLDAEVGHALRRAVLSDEISEEQARAALDALPYLIDNRYPHSPRLIE  85

Query  79   RIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTGQAQCPITVV  125
              W++R N++ YDA YVALA AL+  L+T D RL+      C I +V
Sbjct  86   YTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAPGLPCEIKLV  132


>gi|336118169|ref|YP_004572938.1| hypothetical protein MLP_25210 [Microlunatus phosphovorus NM-1]
 gi|334685950|dbj|BAK35535.1| hypothetical protein MLP_25210 [Microlunatus phosphovorus NM-1]
Length=128

 Score = 66.6 bits (161),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 42/110 (39%), Positives = 59/110 (54%), Gaps = 0/110 (0%)

Query  17   GQARQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRRALQTWRRLAVTRYPVVGL  76
             ++R L   ++  VP L+  E+AS +RRL QR  L A     A++    L +    +  L
Sbjct  16   ARSRLLKDKDKTAVPDLLYLEVASAVRRLEQRGELTARRAAAAMEDLMALPLQVARLRTL  75

Query  77   FERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTGQAQCPITVVP  126
              R WE+R NL+ YDA+YV LAE     LVTAD RL+     +C I + P
Sbjct  76   LPRCWELRHNLTPYDAAYVTLAEFSESPLVTADRRLAAAAGPRCKIELPP  125


>gi|111224206|ref|YP_715000.1| hypothetical protein FRAAL4817 [Frankia alni ACN14a]
 gi|111151738|emb|CAJ63458.1| hypothetical protein; putative PIN domain [Frankia alni ACN14a]
Length=109

 Score = 66.6 bits (161),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 39/105 (38%), Positives = 60/105 (58%), Gaps = 0/105 (0%)

Query  20   RQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRRALQTWRRLAVTRYPVVGLFER  79
            R+L   E L  P L+D E+ S L  + +  +L   +  +A+  ++ L + R+  + L+ R
Sbjct  3    RRLTGVESLLAPGLLDYEMISALFGMRRGGKLTEREMGKAVADYQLLPLVRHETLVLWRR  62

Query  80   IWEIRANLSAYDASYVALAEALNCALVTADLRLSDTGQAQCPITV  124
            + E+   LSAYDA YVALAE L   L+T+D R++  G A C I V
Sbjct  63   VRELHHTLSAYDAQYVALAETLGLPLITSDARIARGGVATCTIEV  107


>gi|333025632|ref|ZP_08453696.1| putative PilT protein-like protein [Streptomyces sp. Tu6071]
 gi|332745484|gb|EGJ75925.1| putative PilT protein-like protein [Streptomyces sp. Tu6071]
Length=102

 Score = 66.6 bits (161),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 36/98 (37%), Positives = 53/98 (55%), Gaps = 0/98 (0%)

Query  28   LHVPHLVDSEIASGLRRLAQRDRLGAADGRRALQTWRRLAVTRYPVVGLFERIWEIRANL  87
            ++ P L+D E A+  R L +  ++      RA++      + R    GL  R+WE+R N 
Sbjct  4    VYAPALIDLEFANVTRGLLRAGKITEHMADRAVRKLPSFPMRRVKHEGLLFRVWELRHNY  63

Query  88   SAYDASYVALAEALNCALVTADLRLSDTGQAQCPITVV  125
            S YDASYVALAE L   L+T D RL      +CP+ ++
Sbjct  64   SPYDASYVALAEQLGATLLTGDARLQRGTGKRCPVELI  101


>gi|271964589|ref|YP_003338785.1| PilT protein domain-containing protein [Streptosporangium roseum 
DSM 43021]
 gi|270507764|gb|ACZ86042.1| PilT protein domain protein [Streptosporangium roseum DSM 43021]
Length=137

 Score = 65.9 bits (159),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 46/124 (38%), Positives = 68/124 (55%), Gaps = 9/124 (7%)

Query  2    IVVDASAALAALLN---DGQARQLIAAERLHVPHLVDSEIASGLRRLA----QRDRLGAA  54
            +VVDAS     L N   D   RQ +A  ++H P L+D EIAS +R          R+  A
Sbjct  3    LVVDASIVFRLLANVKGDDLLRQRLA-RKVHAPALIDVEIASVVRGHVVTGKPEVRISEA  61

Query  55   DGRRALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLS-  113
              +  L+ + +L + R+P++ L  R+ E+R NL+AYD  YVALAE L   ++T D + + 
Sbjct  62   RAQIMLERYAQLKIVRHPMLPLQPRVLELRNNLTAYDGMYVALAELLGVPMLTDDAKFAG  121

Query  114  DTGQ  117
             TG 
Sbjct  122  STGH  125


>gi|152966078|ref|YP_001361862.1| PilT protein-like [Kineococcus radiotolerans SRS30216]
 gi|151360595|gb|ABS03598.1| PilT protein-like [Kineococcus radiotolerans SRS30216]
Length=100

 Score = 63.9 bits (154),  Expect = 7e-09, Method: Compositional matrix adjust.
 Identities = 44/101 (44%), Positives = 56/101 (56%), Gaps = 6/101 (5%)

Query  28   LHVPHLVDSEIASGLRRLAQRDRLGAADGRRALQTWRRL---AVTRYPVVGLFERIWEIR  84
            L  P ++D E+AS LRR A   RL     RRA   W  L    + R     L  R WE+R
Sbjct  2    LTAPEVIDLEVASVLRRAAASGRLP---DRRADLAWNDLIDLPLRRAGHRPLLRRCWELR  58

Query  85   ANLSAYDASYVALAEALNCALVTADLRLSDTGQAQCPITVV  125
              +++YDA+YVALAEAL+  LVTAD RLS      C + V+
Sbjct  59   HTVTSYDAAYVALAEALDIVLVTADARLSRAPGITCEVEVL  99


>gi|50843515|ref|YP_056742.1| hypothetical protein PPA2073 [Propionibacterium acnes KPA171202]
 gi|335052922|ref|ZP_08545781.1| PIN domain protein [Propionibacterium sp. 434-HC2]
 gi|50841117|gb|AAT83784.1| conserved protein [Propionibacterium acnes KPA171202]
 gi|315107867|gb|EFT79843.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium 
acnes HL030PA1]
 gi|333768546|gb|EGL45727.1| PIN domain protein [Propionibacterium sp. 434-HC2]
 gi|335278469|gb|AEH30374.1| hypothetical protein TIB1ST10_10525 [Propionibacterium acnes 
6609]
Length=129

 Score = 61.6 bits (148),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 43/114 (38%), Positives = 55/114 (49%), Gaps = 3/114 (2%)

Query  2    IVVDASAALAALLNDGQAR---QLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRR  58
            +VVDAS     L+     R   Q    E    P  + +EIA  +R L+    +  A+  R
Sbjct  3    LVVDASVLAEMLVGSTVGRAAWQQWGGEEFIAPQHLPAEIAHVVRNLSLGHLITDAEAMR  62

Query  59   ALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRL  112
             L  +R   V  YPV  L    WE+R N+SAYDA YV LA  L   L+T D RL
Sbjct  63   ILSDFRAFKVELYPVEPLMVDAWEMRHNVSAYDALYVVLARLLGVCLLTCDRRL  116


>gi|282854837|ref|ZP_06264171.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium 
acnes J139]
 gi|335051617|ref|ZP_08544531.1| PIN domain protein [Propionibacterium sp. 409-HC1]
 gi|342213313|ref|ZP_08706038.1| PIN domain protein [Propionibacterium sp. CC003-HC2]
 7 more sequence titles
 Length=129

 Score = 61.6 bits (148),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 43/114 (38%), Positives = 55/114 (49%), Gaps = 3/114 (2%)

Query  2    IVVDASAALAALLNDGQAR---QLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRR  58
            +VVDAS     L+     R   Q    E    P  + +EIA  +R L+    +  A+  R
Sbjct  3    LVVDASVLAEMLVGSTVGRAAWQQWGGEEFIAPQHLPAEIAHVVRNLSLGHLITDAEAMR  62

Query  59   ALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRL  112
             L  +R   V  YPV  L    WE+R N+SAYDA YV LA  L   L+T D RL
Sbjct  63   ILSDFRAFKVELYPVEPLMVDAWEMRHNVSAYDALYVVLARLLGACLLTCDRRL  116


>gi|313827108|gb|EFS64822.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium 
acnes HL063PA1]
Length=129

 Score = 61.2 bits (147),  Expect = 5e-08, Method: Compositional matrix adjust.
 Identities = 43/114 (38%), Positives = 55/114 (49%), Gaps = 3/114 (2%)

Query  2    IVVDASAALAALLNDG---QARQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRR  58
            +VVDAS     L+       A Q    E    P  + +EIA  +R L+    +  A+  R
Sbjct  3    LVVDASVLAEMLVGSTVGHAAWQQWGGEEFIAPQHLPAEIAHVVRNLSSGHLITDAEAMR  62

Query  59   ALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRL  112
             L  +R   V  YPV  L    WE+R N+SAYDA YV LA  L   L+T D RL
Sbjct  63   ILSDFRAFKVELYPVEPLMVDAWEMRHNVSAYDALYVVLARLLGACLLTCDRRL  116


>gi|313832495|gb|EFS70209.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium 
acnes HL056PA1]
Length=129

 Score = 61.2 bits (147),  Expect = 5e-08, Method: Compositional matrix adjust.
 Identities = 44/114 (39%), Positives = 56/114 (50%), Gaps = 3/114 (2%)

Query  2    IVVDASAALAALLNDG---QARQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRR  58
            +VVDAS     L+       A Q    E    P  + +EIA  +R L+    +  A+  R
Sbjct  3    LVVDASVLAEMLVGSTVGHAAWQQWGGEEFIAPQHLPAEIAHVVRNLSLGHLITDAEAMR  62

Query  59   ALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRL  112
             L  +R L V  YPV  L    WE+R N+SAYDA YV LA  L   L+T D RL
Sbjct  63   ILSDFRALKVELYPVEPLMVDAWEMRHNVSAYDALYVVLARLLGACLLTCDRRL  116


>gi|284992067|ref|YP_003410621.1| PilT domain-containing protein [Geodermatophilus obscurus DSM 
43160]
 gi|284065312|gb|ADB76250.1| PilT domain-containing protein [Geodermatophilus obscurus DSM 
43160]
Length=131

 Score = 60.8 bits (146),  Expect = 6e-08, Method: Compositional matrix adjust.
 Identities = 40/108 (38%), Positives = 54/108 (50%), Gaps = 0/108 (0%)

Query  15   NDGQARQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRRALQTWRRLAVTRYPVV  74
            + G AR L+  E L  P  +  + ++ LRR     RLG      A     R++V  +   
Sbjct  20   DGGWARALLRGEDLTAPTHMQIQASNVLRRAVLAGRLGVDAASLAHLDLTRMSVRSFGFD  79

Query  75   GLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTGQAQCPI  122
             L  RIWE+   ++AYDA+YVALAE L   LVT D RL+      CP 
Sbjct  80   PLATRIWELHPAVTAYDAAYVALAEELAVPLVTLDRRLARASGPTCPF  127


>gi|311896050|dbj|BAJ28458.1| hypothetical protein KSE_26460 [Kitasatospora setae KM-6054]
Length=134

 Score = 60.5 bits (145),  Expect = 8e-08, Method: Compositional matrix adjust.
 Identities = 47/131 (36%), Positives = 63/131 (49%), Gaps = 5/131 (3%)

Query  1    MIVVDASAALAALLNDGQARQLIAAERLHVPHLVDSE-----IASGLRRLAQRDRLGAAD  55
            MIVVDASA + +L + G       A     P  V  E     +   LR L    +L A +
Sbjct  1    MIVVDASAVVLSLSDRGPRGDAARALLAADPEWVAPEHVVIEVMQSLRGLYLAKQLTAEE  60

Query  56   GRRALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDT  115
                 +    LA+ +  V  L  RIWE++ NL+  DA+YVA+AE     LVTADLRL   
Sbjct  61   VAELTRRLPGLAIRKVEVAPLLGRIWELKDNLTPDDAAYVAVAELHGAPLVTADLRLMRA  120

Query  116  GQAQCPITVVP  126
               +C I  +P
Sbjct  121  SGPRCEIRGIP  131


>gi|314967266|gb|EFT11365.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium 
acnes HL082PA2]
 gi|314981768|gb|EFT25861.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium 
acnes HL110PA3]
 gi|315092528|gb|EFT64504.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium 
acnes HL110PA4]
 gi|315094771|gb|EFT66747.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium 
acnes HL060PA1]
 gi|327328620|gb|EGE70380.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium 
acnes HL103PA1]
Length=129

 Score = 60.5 bits (145),  Expect = 9e-08, Method: Compositional matrix adjust.
 Identities = 43/114 (38%), Positives = 55/114 (49%), Gaps = 3/114 (2%)

Query  2    IVVDASAALAALLNDGQAR---QLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRR  58
            +VVDAS     L+     R   Q    E    P  + +EIA  +R L+    +  A+  R
Sbjct  3    LVVDASVLAEMLVGSTVGRAAWQQWGGEEFIAPQHLLAEIAHVVRNLSLGHLITDAEAMR  62

Query  59   ALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRL  112
             L  +R   V  YPV  L    WE+R N+SAYDA YV LA  L   L+T D RL
Sbjct  63   ILSDFRAFKVELYPVEPLMVDAWEMRHNVSAYDALYVVLARLLGACLLTCDRRL  116


>gi|289426009|ref|ZP_06427756.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium 
acnes SK187]
 gi|289427948|ref|ZP_06429652.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium 
acnes J165]
 gi|295131584|ref|YP_003582247.1| PIN domain protein [Propionibacterium acnes SK137]
 55 more sequence titles
 Length=129

 Score = 60.1 bits (144),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 43/114 (38%), Positives = 55/114 (49%), Gaps = 3/114 (2%)

Query  2    IVVDASAALAALLNDG---QARQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRR  58
            +VVDAS     L+       A Q    E    P  + +EIA  +R L+    +  A+  R
Sbjct  3    LVVDASVLAEMLVGSTVGHAAWQQWGGEEFIAPQHLPAEIAHVVRNLSLGHLITDAEAMR  62

Query  59   ALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRL  112
             L  +R   V  YPV  L    WE+R N+SAYDA YV LA  L   L+T D RL
Sbjct  63   ILSDFRAFKVELYPVEPLMVDAWEMRHNVSAYDALYVVLARLLGACLLTCDRRL  116


>gi|15608858|ref|NP_216236.1| hypothetical protein Rv1720c [Mycobacterium tuberculosis H37Rv]
 gi|15841182|ref|NP_336219.1| hypothetical protein MT1761 [Mycobacterium tuberculosis CDC1551]
 gi|31792908|ref|NP_855401.1| hypothetical protein Mb1749c [Mycobacterium bovis AF2122/97]
 78 more sequence titles
 Length=129

 Score = 60.1 bits (144),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 41/129 (32%), Positives = 66/129 (52%), Gaps = 5/129 (3%)

Query  1    MIVVDASAALAALLND----GQARQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADG  56
            MIV+DASAA+  +L        AR+L   E +H P   D E+   +R+   R  +   +G
Sbjct  1    MIVLDASAAVELMLTTPAGAAVARRL-RGETVHAPAHFDVEVIGAIRQAVVRQLISDHEG  59

Query  57   RRALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTG  116
               +  +  L V R+P+    +R +++R+  +  D +YVALAE L   L+T D RL+ + 
Sbjct  60   LVVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSH  119

Query  117  QAQCPITVV  125
                 I +V
Sbjct  120  GHNAEIELV  128


>gi|333989975|ref|YP_004522589.1| PilT protein domain-containing protein [Mycobacterium sp. JDM601]
 gi|333485943|gb|AEF35335.1| PilT protein domain protein [Mycobacterium sp. JDM601]
Length=67

 Score = 59.3 bits (142),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 44/62 (71%), Gaps = 1/62 (1%)

Query  65   RLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALN-CALVTADLRLSDTGQAQCPIT  123
            RL +TR+P   L  RIWE+R NLSAYDA+YVALAE ++  AL+T D RL++    +C + 
Sbjct  6    RLTLTRFPADWLRPRIWELRDNLSAYDATYVALAELVDATALLTTDARLANAPGPRCRVD  65

Query  124  VV  125
            ++
Sbjct  66   LL  67


>gi|337766707|emb|CCB75418.1| conserved protein of unknown function [Streptomyces cattleya 
NRRL 8057]
Length=136

 Score = 58.2 bits (139),  Expect = 4e-07, Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 59/95 (63%), Gaps = 0/95 (0%)

Query  31   PHLVDSEIASGLRRLAQRDRLGAADGRRALQTWRRLAVTRYPVVGLFERIWEIRANLSAY  90
            P LVD EI S L  + +  +L   +  +A+  ++ L + R+  + L++R+  +  NLSAY
Sbjct  39   PTLVDYEIQSALLGMRRGGKLTEREVAKAIDAYQLLPLLRHETLFLWDRVQALHGNLSAY  98

Query  91   DASYVALAEALNCALVTADLRLSDTGQAQCPITVV  125
            DA YVALAEAL   L+T+D+R+  +G A+C I V 
Sbjct  99   DAQYVALAEALAATLITSDVRIERSGAAKCDIEVF  133


>gi|315446137|ref|YP_004079016.1| nucleic acid-binding protein, contains PIN domain [Mycobacterium 
sp. Spyr1]
 gi|315264440|gb|ADU01182.1| predicted nucleic acid-binding protein, contains PIN domain [Mycobacterium 
sp. Spyr1]
Length=133

 Score = 57.8 bits (138),  Expect = 5e-07, Method: Compositional matrix adjust.
 Identities = 53/129 (42%), Positives = 68/129 (53%), Gaps = 4/129 (3%)

Query  1    MIVVDASAALAALLNDGQ----ARQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADG  56
            MIVVDAS    AL +DG     ARQ +  E L  P L+D E+AS  RR      + A   
Sbjct  1    MIVVDASVLAVALGDDGADGRLARQRLTGEALAAPELIDLEVASVWRRHVAAKLMTARRA  60

Query  57   RRALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTG  116
              A+     L + R     L ERIW +R  ++ YDA+Y ALAEAL   LVTAD+RL+   
Sbjct  61   DAAVSDLADLPLRRCSHRPLLERIWVLRRTVTPYDAAYAALAEALEVVLVTADVRLARAP  120

Query  117  QAQCPITVV  125
               C + V+
Sbjct  121  GLACDVEVI  129


>gi|340626727|ref|YP_004745179.1| hypothetical protein MCAN_17311 [Mycobacterium canettii CIPT 
140010059]
 gi|340004917|emb|CCC44063.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=129

 Score = 57.0 bits (136),  Expect = 8e-07, Method: Compositional matrix adjust.
 Identities = 40/129 (32%), Positives = 65/129 (51%), Gaps = 5/129 (3%)

Query  1    MIVVDASAALAALL----NDGQARQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADG  56
            MIV+DASAA+  +L        AR+L   E +H P   D E+   + +   R  +   +G
Sbjct  1    MIVLDASAAVELMLATPAGAAVARRL-RGETVHAPAHFDVEVIGAIHQAVVRQLISDHEG  59

Query  57   RRALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTG  116
               +  +  L V R+P+    +R +++R+  +  D +YVALAE L   L+T D RL+ + 
Sbjct  60   LVVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSH  119

Query  117  QAQCPITVV  125
                 I +V
Sbjct  120  GHTAEIELV  128


>gi|240170953|ref|ZP_04749612.1| hypothetical protein MkanA1_16703 [Mycobacterium kansasii ATCC 
12478]
Length=129

 Score = 57.0 bits (136),  Expect = 8e-07, Method: Compositional matrix adjust.
 Identities = 42/129 (33%), Positives = 65/129 (51%), Gaps = 5/129 (3%)

Query  1    MIVVDASAALAALL----NDGQARQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADG  56
            MIV+DASAA+  +L        AR+L   E +H P  +D E+   +RR   R  +   +G
Sbjct  1    MIVLDASAAVELVLATPPGAAVARRL-RDETVHAPAHIDVEVIGAIRRAVVRRLISDHEG  59

Query  57   RRALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTG  116
              A+  +  L + R+P+    +R +++R      DA YVALAE     L+T D RL+ + 
Sbjct  60   VVAVADFLSLQIRRWPIKPFAQRAYQLRTTHIVADAVYVALAEGFGVRLITCDGRLAQSH  119

Query  117  QAQCPITVV  125
                 I +V
Sbjct  120  GHDAEIELV  128


>gi|330465116|ref|YP_004402859.1| toxin [Verrucosispora maris AB-18-032]
 gi|328808087|gb|AEB42259.1| toxin [Verrucosispora maris AB-18-032]
Length=138

 Score = 57.0 bits (136),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 47/127 (38%), Positives = 66/127 (52%), Gaps = 5/127 (3%)

Query  1    MIVVDASAALAALLNDGQARQLIAAERLHVPHLVDS-----EIASGLRRLAQRDRLGAAD  55
            +IVVDAS    AL++DG       AE    PH         E+ S +R      +LG A 
Sbjct  6    VIVVDASVLADALVDDGPVGDAARAELTGDPHWAAPSHLLIEVMSVIRGKVLGGKLGLAR  65

Query  56   GRRALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDT  115
             + A+ T   L +    V  L +R+W++R N++AYDA+Y+A AE L C LVT D RL+  
Sbjct  66   AQEAIDTLPSLVIDEVGVATLLDRMWQLRGNVTAYDAAYIAAAELLACPLVTGDGRLAKA  125

Query  116  GQAQCPI  122
               +C I
Sbjct  126  NGVRCEI  132


>gi|313836325|gb|EFS74039.1| toxin-antitoxin system, toxin component, PIN domain protein [Propionibacterium 
acnes HL037PA2]
 gi|314928789|gb|EFS92620.1| toxin-antitoxin system, toxin component, PIN domain protein [Propionibacterium 
acnes HL044PA1]
 gi|314971175|gb|EFT15273.1| toxin-antitoxin system, toxin component, PIN domain protein [Propionibacterium 
acnes HL037PA3]
 gi|328906462|gb|EGG26237.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium 
humerusii P08]
Length=197

 Score = 56.2 bits (134),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 36/94 (39%), Positives = 47/94 (50%), Gaps = 0/94 (0%)

Query  19   ARQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRRALQTWRRLAVTRYPVVGLFE  78
            A Q    E    P  + +EIA  +R L+    +  A+  + L  +R   V  YPV  L  
Sbjct  23   AWQQWGGEEFIAPQHLSAEIAHVVRNLSLGQLITDAEAMQILSDFRAFKVELYPVEPLMV  82

Query  79   RIWEIRANLSAYDASYVALAEALNCALVTADLRL  112
              WE+R N+SAYDA YV LA  L   L+T D RL
Sbjct  83   DAWEMRHNVSAYDALYVVLARLLGACLLTRDHRL  116


>gi|326903335|gb|EGE50268.1| toxin [Mycobacterium tuberculosis W-148]
Length=129

 Score = 56.2 bits (134),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 40/129 (32%), Positives = 65/129 (51%), Gaps = 5/129 (3%)

Query  1    MIVVDASAALAALLND----GQARQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADG  56
            MIV+DASAA+  +L        AR+L   E +  P   D E+   +R+   R  +   +G
Sbjct  1    MIVLDASAAVELMLTTPAGAAVARRL-RGETVRAPAHFDVEVIGAIRQAVVRQLISDHEG  59

Query  57   RRALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTG  116
               +  +  L V R+P+    +R +++R+  +  D +YVALAE L   L+T D RL+ + 
Sbjct  60   LVVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSH  119

Query  117  QAQCPITVV  125
                 I +V
Sbjct  120  GHNAEIELV  128


>gi|336177502|ref|YP_004582877.1| PilT protein domain-containing protein [Frankia symbiont of Datisca 
glomerata]
 gi|334858482|gb|AEH08956.1| PilT protein domain protein [Frankia symbiont of Datisca glomerata]
Length=131

 Score = 56.2 bits (134),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 43/130 (34%), Positives = 62/130 (48%), Gaps = 5/130 (3%)

Query  1    MIVVDASAALAALLNDGQARQLIAAERLH-----VPHLVDSEIASGLRRLAQRDRLGAAD  55
            MIVVDAS    AL+   +  Q       H      P     E+ S +  L    ++    
Sbjct  1    MIVVDASVLANALVYADERGQRARVALGHDTEWAAPEHWMVEVFSVMHGLTLGKKISEER  60

Query  56   GRRALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDT  115
             R A+     L V    +  L  R+W++R+ +S YDA+YVALAEA + ALVT+D RL+  
Sbjct  61   ARSAIARLPHLGVDHVRIDALLPRMWQLRSGISGYDAAYVALAEARDLALVTSDSRLARA  120

Query  116  GQAQCPITVV  125
                C + +V
Sbjct  121  AMPFCAVRLV  130


>gi|145225776|ref|YP_001136454.1| PilT domain-containing protein [Mycobacterium gilvum PYR-GCK]
 gi|145218262|gb|ABP47666.1| PilT protein domain protein [Mycobacterium gilvum PYR-GCK]
Length=155

 Score = 55.5 bits (132),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 51/129 (40%), Positives = 67/129 (52%), Gaps = 4/129 (3%)

Query  1    MIVVDASAALAALLNDG----QARQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADG  56
            +IVVDAS    AL +DG    +ARQ +  E L  P L+D E+AS  RR      + A   
Sbjct  23   VIVVDASVLAVALGDDGADGRRARQRLTGEALAAPELIDLEVASVWRRHVAAKLMTARRA  82

Query  57   RRALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTG  116
               +     L + R     L ERIW +R  ++ YDA+Y ALAEAL   LVTAD RL+   
Sbjct  83   DAGVSDLEDLPLRRCSHRPLLERIWALRRTVTPYDAAYAALAEALEVVLVTADARLARAP  142

Query  117  QAQCPITVV  125
               C + V+
Sbjct  143  GLACDVEVI  151


>gi|256371478|ref|YP_003109302.1| PilT protein domain-containing protein [Acidimicrobium ferrooxidans 
DSM 10331]
 gi|256008062|gb|ACU53629.1| PilT protein domain protein [Acidimicrobium ferrooxidans DSM 
10331]
Length=146

 Score = 55.5 bits (132),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 45/113 (40%), Positives = 58/113 (52%), Gaps = 3/113 (2%)

Query  3    VVDASAALAALLND--GQA-RQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRRA  59
            VVDASA +  LL++  G+A R+ IA   LH P  VD+E+ S L RL + D L A      
Sbjct  23   VVDASALVDLLLDNELGRAVRRRIAGHALHAPAHVDAEVLSALGRLHRADSLDAGTVEVK  82

Query  60   LQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRL  112
            L+      + R+PV  L    W  R  L   DA Y+ LA +    LVT D RL
Sbjct  83   LRELAAAPIERHPVHDLLLGTWARRQELRLVDAIYIELAVSRGVPLVTTDRRL  135


>gi|218295256|ref|ZP_03496092.1| PilT protein domain protein [Thermus aquaticus Y51MC23]
 gi|218244459|gb|EED10984.1| PilT protein domain protein [Thermus aquaticus Y51MC23]
Length=132

 Score = 54.7 bits (130),  Expect = 5e-06, Method: Compositional matrix adjust.
 Identities = 43/127 (34%), Positives = 65/127 (52%), Gaps = 9/127 (7%)

Query  2    IVVDASAALAALLNDGQARQ---LIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRR  58
            +V+DASAA   LL     RQ   L+  +RL  P L+D+E+ + +R+     RL     + 
Sbjct  4    LVLDASAAAEYLLRTPLGRQVAALVEGKRLFAPALLDAEVLAVVRKATLSGRLSPTRAQE  63

Query  59   ALQ---TWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDT  115
            AL+   +W    V   P   L    + +R  L+AYDA YVALA+ L+  ++TAD  L+  
Sbjct  64   ALEDLFSWPLFRVDHGP---LLLPAFALRDRLTAYDALYVALAQRLSAPILTADGPLARA  120

Query  116  GQAQCPI  122
                 P+
Sbjct  121  PGLPVPL  127


>gi|134102274|ref|YP_001107935.1| hypothetical protein SACE_5826 [Saccharopolyspora erythraea NRRL 
2338]
 gi|291003763|ref|ZP_06561736.1| hypothetical protein SeryN2_04507 [Saccharopolyspora erythraea 
NRRL 2338]
 gi|133914897|emb|CAM05010.1| hypothetical protein SACE_5826 [Saccharopolyspora erythraea NRRL 
2338]
Length=129

 Score = 53.5 bits (127),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 41/128 (33%), Positives = 68/128 (54%), Gaps = 6/128 (4%)

Query  3    VVDASAALAALLNDGQAR---QLIAAE--RLHVPHLVDSEIASGLRRLAQRDRLGAADGR  57
            +VDASA L  LL   +A    +LI++   + HVP  +D E+ + LR+  +   L +A+  
Sbjct  1    MVDASAVLDLLLQLRRAHRIGELISSPFAQSHVPDTIDREVINVLRKRERSGSLTSAEAE  60

Query  58   RALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTGQ  117
                 +  L    +       R+W +R+  S  DA YV+LAE+L+  L+T+D +L+  G 
Sbjct  61   TVFGEFLLLPFEVHDARPFAPRVWGLRSVCSVGDAYYVSLAESLDATLITSDEKLA-RGV  119

Query  118  AQCPITVV  125
            AQ  + V+
Sbjct  120  AQLDLDVI  127


>gi|84494959|ref|ZP_00994078.1| hypothetical protein JNB_09174 [Janibacter sp. HTCC2649]
 gi|84384452|gb|EAQ00332.1| hypothetical protein JNB_09174 [Janibacter sp. HTCC2649]
Length=131

 Score = 53.1 bits (126),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 47/128 (37%), Positives = 66/128 (52%), Gaps = 4/128 (3%)

Query  1    MIVVDASAAL-AALLNDG--QARQLIAAE-RLHVPHLVDSEIASGLRRLAQRDRLGAADG  56
            MIV+DASA +   LL+ G  Q R  IA + +L  P L+  E++S L RL     + + + 
Sbjct  1    MIVLDASALVDFLLLSPGWEQIRGHIAGDVQLAAPDLLSLEVSSTLWRLECAGTITSEES  60

Query  57   RRALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTG  116
               L    RLA+ R P++ L    W +R +L   DA YVALA  L   L+T D +L+   
Sbjct  61   ASCLTQAGRLAIERVPMLDLTADAWAMRHSLRISDAYYVALARQLRWPLLTTDQKLARGA  120

Query  117  QAQCPITV  124
                 ITV
Sbjct  121  TGISVITV  128


>gi|336117185|ref|YP_004571952.1| hypothetical protein MLP_15350 [Microlunatus phosphovorus NM-1]
 gi|334684964|dbj|BAK34549.1| hypothetical protein MLP_15350 [Microlunatus phosphovorus NM-1]
Length=50

 Score = 52.0 bits (123),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 25/47 (54%), Positives = 34/47 (73%), Gaps = 0/47 (0%)

Query  79   RIWEIRANLSAYDASYVALAEALNCALVTADLRLSDTGQAQCPITVV  125
            R +E+R+N++ YDA YVALAEAL   LVTAD RL++    +C I V+
Sbjct  3    RAFELRSNVTPYDACYVALAEALESELVTADRRLANASGPRCTIRVI  49


>gi|15607689|ref|NP_215063.1| hypothetical protein Rv0549c [Mycobacterium tuberculosis H37Rv]
 gi|15839946|ref|NP_334983.1| hypothetical protein MT0574 [Mycobacterium tuberculosis CDC1551]
 gi|148660318|ref|YP_001281841.1| hypothetical protein MRA_0556 [Mycobacterium tuberculosis H37Ra]
 61 more sequence titles
 Length=137

 Score = 48.9 bits (115),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 42/116 (37%), Positives = 57/116 (50%), Gaps = 4/116 (3%)

Query  2    IVVDASAA--LAALLND--GQARQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGR  57
            +VVDASA   L A  +D     R  +A   +H P   D+E+ S L R+ +   L  A   
Sbjct  12   VVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD  71

Query  58   RALQTWRRLAVTRYPVVGLFERIWEIRANLSAYDASYVALAEALNCALVTADLRLS  113
             AL+  R++ VTR+ +  L    W  R  L   DA YV LAE     L+T D RL+
Sbjct  72   AALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLA  127



Lambda     K      H
   0.324    0.134    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 129319095676




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40