BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0964c
Length=160
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608104|ref|NP_215479.1| hypothetical protein Rv0964c [Mycob... 322 9e-87
gi|31792153|ref|NP_854646.1| hypothetical protein Mb0989c [Mycob... 320 6e-86
gi|15840390|ref|NP_335427.1| hypothetical protein MT0992.1 [Myco... 275 2e-72
gi|240169358|ref|ZP_04748017.1| hypothetical protein MkanA1_0859... 133 8e-30
gi|340625977|ref|YP_004744429.1| hypothetical protein MCAN_09681... 132 2e-29
gi|294996454|ref|ZP_06802145.1| hypothetical protein Mtub2_18604... 117 7e-25
gi|339640529|ref|ZP_08661973.1| RHS repeat-associated core domai... 38.1 0.43
gi|227833423|ref|YP_002835130.1| chromosome segregation protein ... 35.4 2.5
gi|262184413|ref|ZP_06043834.1| chromosome segregation protein [... 35.0 3.7
gi|301632042|ref|XP_002945100.1| PREDICTED: hypothetical protein... 34.7 5.4
gi|254428041|ref|ZP_05041748.1| undecaprenyl diphosphate synthas... 34.3 6.9
>gi|15608104|ref|NP_215479.1| hypothetical protein Rv0964c [Mycobacterium tuberculosis H37Rv]
gi|148660744|ref|YP_001282267.1| hypothetical protein MRA_0971A [Mycobacterium tuberculosis H37Ra]
gi|167967738|ref|ZP_02550015.1| hypothetical protein MtubH3_06758 [Mycobacterium tuberculosis
H37Ra]
11 more sequence titles
Length=160
Score = 322 bits (826), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 160/160 (100%), Positives = 160/160 (100%), Gaps = 0/160 (0%)
Query 1 MGLLGFGGAAAEAAQVATHHTTVLLDHHAGACEAVARAAEKAAEEVAAIKMRLQVIRDAA 60
MGLLGFGGAAAEAAQVATHHTTVLLDHHAGACEAVARAAEKAAEEVAAIKMRLQVIRDAA
Sbjct 1 MGLLGFGGAAAEAAQVATHHTTVLLDHHAGACEAVARAAEKAAEEVAAIKMRLQVIRDAA 60
Query 61 REHHLTIAYATGTALPPPDLSSYSPADQQAILNTAIRRASNVCWPTPRPPMRIWPRRFDA 120
REHHLTIAYATGTALPPPDLSSYSPADQQAILNTAIRRASNVCWPTPRPPMRIWPRRFDA
Sbjct 61 REHHLTIAYATGTALPPPDLSSYSPADQQAILNTAIRRASNVCWPTPRPPMRIWPRRFDA 120
Query 121 PPGPCRASRSMPNSAMRHPQCRRCRRRTATLRRSSGGGIR 160
PPGPCRASRSMPNSAMRHPQCRRCRRRTATLRRSSGGGIR
Sbjct 121 PPGPCRASRSMPNSAMRHPQCRRCRRRTATLRRSSGGGIR 160
>gi|31792153|ref|NP_854646.1| hypothetical protein Mb0989c [Mycobacterium bovis AF2122/97]
gi|121636890|ref|YP_977113.1| hypothetical protein BCG_1018c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|148822173|ref|YP_001286927.1| hypothetical protein TBFG_10982 [Mycobacterium tuberculosis F11]
53 more sequence titles
Length=160
Score = 320 bits (819), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 159/160 (99%), Positives = 159/160 (99%), Gaps = 0/160 (0%)
Query 1 MGLLGFGGAAAEAAQVATHHTTVLLDHHAGACEAVARAAEKAAEEVAAIKMRLQVIRDAA 60
MGLLGFGGAAAEAAQVATHHTTVLLDHHAGACEAVARAAEKAAEEVAAIKMRLQVIRDAA
Sbjct 1 MGLLGFGGAAAEAAQVATHHTTVLLDHHAGACEAVARAAEKAAEEVAAIKMRLQVIRDAA 60
Query 61 REHHLTIAYATGTALPPPDLSSYSPADQQAILNTAIRRASNVCWPTPRPPMRIWPRRFDA 120
REHHLTIAYATGTALPPPDLSSYSPADQQAILNTAIRRASNVCWPTPRPPMRIWPRRFDA
Sbjct 61 REHHLTIAYATGTALPPPDLSSYSPADQQAILNTAIRRASNVCWPTPRPPMRIWPRRFDA 120
Query 121 PPGPCRASRSMPNSAMRHPQCRRCRRRTATLRRSSGGGIR 160
PPG CRASRSMPNSAMRHPQCRRCRRRTATLRRSSGGGIR
Sbjct 121 PPGTCRASRSMPNSAMRHPQCRRCRRRTATLRRSSGGGIR 160
>gi|15840390|ref|NP_335427.1| hypothetical protein MT0992.1 [Mycobacterium tuberculosis CDC1551]
gi|254231271|ref|ZP_04924598.1| hypothetical protein TBCG_00956 [Mycobacterium tuberculosis C]
gi|13880558|gb|AAK45241.1| hypothetical protein MT0992.1 [Mycobacterium tuberculosis CDC1551]
gi|124600330|gb|EAY59340.1| hypothetical protein TBCG_00956 [Mycobacterium tuberculosis C]
Length=138
Score = 275 bits (702), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 136/138 (99%), Positives = 137/138 (99%), Gaps = 0/138 (0%)
Query 23 VLLDHHAGACEAVARAAEKAAEEVAAIKMRLQVIRDAAREHHLTIAYATGTALPPPDLSS 82
+LLDHHAGACEAVARAAEKAAEEVAAIKMRLQVIRDAAREHHLTIAYATGTALPPPDLSS
Sbjct 1 MLLDHHAGACEAVARAAEKAAEEVAAIKMRLQVIRDAAREHHLTIAYATGTALPPPDLSS 60
Query 83 YSPADQQAILNTAIRRASNVCWPTPRPPMRIWPRRFDAPPGPCRASRSMPNSAMRHPQCR 142
YSPADQQAILNTAIRRASNVCWPTPRPPMRIWPRRFDAPPG CRASRSMPNSAMRHPQCR
Sbjct 61 YSPADQQAILNTAIRRASNVCWPTPRPPMRIWPRRFDAPPGTCRASRSMPNSAMRHPQCR 120
Query 143 RCRRRTATLRRSSGGGIR 160
RCRRRTATLRRSSGGGIR
Sbjct 121 RCRRRTATLRRSSGGGIR 138
>gi|240169358|ref|ZP_04748017.1| hypothetical protein MkanA1_08596 [Mycobacterium kansasii ATCC
12478]
Length=546
Score = 133 bits (335), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 73/96 (77%), Positives = 81/96 (85%), Gaps = 0/96 (0%)
Query 1 MGLLGFGGAAAEAAQVATHHTTVLLDHHAGACEAVARAAEKAAEEVAAIKMRLQVIRDAA 60
M LL FGG AA+AA ATH TT+LLD HA ACEAVARAAEK+AEEVAAIK+RL IRD+A
Sbjct 23 MRLLDFGGDAADAALAATHRTTMLLDDHADACEAVARAAEKSAEEVAAIKLRLHAIRDSA 82
Query 61 REHHLTIAYATGTALPPPDLSSYSPADQQAILNTAI 96
R++HLTI ATGTALPP DL SYSPADQQ+ILN AI
Sbjct 83 RDYHLTIDNATGTALPPADLWSYSPADQQSILNAAI 118
>gi|340625977|ref|YP_004744429.1| hypothetical protein MCAN_09681 [Mycobacterium canettii CIPT
140010059]
gi|340004167|emb|CCC43305.1| hypothetical protein MCAN_09681 [Mycobacterium canettii CIPT
140010059]
Length=163
Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/102 (85%), Positives = 90/102 (89%), Gaps = 0/102 (0%)
Query 1 MGLLGFGGAAAEAAQVATHHTTVLLDHHAGACEAVARAAEKAAEEVAAIKMRLQVIRDAA 60
M LL FGGAAAEAAQVATHHTTVLLD HAGACEAVARAAEKAA+EV AIKMRLQ+IRDAA
Sbjct 1 MRLLDFGGAAAEAAQVATHHTTVLLDDHAGACEAVARAAEKAADEVTAIKMRLQLIRDAA 60
Query 61 REHHLTIAYATGTALPPPDLSSYSPADQQAILNTAIRRASNV 102
R +HL I ATGTALPPPDLSSYSPADQQAILNTAIR +
Sbjct 61 RGYHLMIDDATGTALPPPDLSSYSPADQQAILNTAIRLTEGI 102
>gi|294996454|ref|ZP_06802145.1| hypothetical protein Mtub2_18604 [Mycobacterium tuberculosis
210]
Length=65
Score = 117 bits (292), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 59/59 (100%), Positives = 59/59 (100%), Gaps = 0/59 (0%)
Query 1 MGLLGFGGAAAEAAQVATHHTTVLLDHHAGACEAVARAAEKAAEEVAAIKMRLQVIRDA 59
MGLLGFGGAAAEAAQVATHHTTVLLDHHAGACEAVARAAEKAAEEVAAIKMRLQVIRDA
Sbjct 1 MGLLGFGGAAAEAAQVATHHTTVLLDHHAGACEAVARAAEKAAEEVAAIKMRLQVIRDA 59
>gi|339640529|ref|ZP_08661973.1| RHS repeat-associated core domain protein [Streptococcus sp.
oral taxon 056 str. F0418]
gi|339453798|gb|EGP66413.1| RHS repeat-associated core domain protein [Streptococcus sp.
oral taxon 056 str. F0418]
Length=3176
Score = 38.1 bits (87), Expect = 0.43, Method: Composition-based stats.
Identities = 31/92 (34%), Positives = 44/92 (48%), Gaps = 13/92 (14%)
Query 68 AYATGTALPPPDLSSYSPADQQAILNTAIRRASNVCWPTPRPPMRIWPRRFDAPPGPCRA 127
++ATGT PP+LS A ++ N A +R S + PT + P R+ P FD R
Sbjct 3075 SWATGTR--PPNLSP-EGAGRKGAFNEA-KRHSGI--PTSQSPDRVEPN-FD------RR 3121
Query 128 SRSMPNSAMRHPQCRRCRRRTATLRRSSGGGI 159
R P Q + R+ T T+R +GG I
Sbjct 3122 GRRQPGRTYEFDQIQNGRKNTITIRDDAGGHI 3153
>gi|227833423|ref|YP_002835130.1| chromosome segregation protein [Corynebacterium aurimucosum ATCC
700975]
gi|227454439|gb|ACP33192.1| chromosome segregation protein [Corynebacterium aurimucosum ATCC
700975]
Length=1167
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/60 (44%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query 8 GAAAEAAQVATHHTTVLLDHHAGACEAVARAAEKAAEEVAAIKMRLQVIRDAAREHHLTI 67
GA AEA +VA L+H A E + A +AA E AA RL+ +RDA REH T+
Sbjct 425 GAQAEADEVADK-----LEHLAAEREPLEEAHVRAASESAAADKRLEQLRDAQREHERTV 479
>gi|262184413|ref|ZP_06043834.1| chromosome segregation protein [Corynebacterium aurimucosum ATCC
700975]
Length=806
Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/60 (44%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query 8 GAAAEAAQVATHHTTVLLDHHAGACEAVARAAEKAAEEVAAIKMRLQVIRDAAREHHLTI 67
GA AEA +VA L+H A E + A +AA E AA RL+ +RDA REH T+
Sbjct 425 GAQAEADEVADK-----LEHLAAEREPLEEAHVRAASESAAADKRLEQLRDAQREHERTV 479
>gi|301632042|ref|XP_002945100.1| PREDICTED: hypothetical protein LOC100486317 [Xenopus (Silurana)
tropicalis]
Length=1166
Score = 34.7 bits (78), Expect = 5.4, Method: Composition-based stats.
Identities = 38/152 (25%), Positives = 56/152 (37%), Gaps = 7/152 (4%)
Query 10 AAEAAQVATHHTTVLLDH---HAGACEAVARAAEKAAEEVAAIKMRLQVIRDAAREHHLT 66
AA+A +V L H A + +E+A A +++ A R
Sbjct 35 AAQAGEVERRLIAELCLHPLPQGATSGAESPPSEEATSPAAPSSAPSALLKRAPRRGSAP 94
Query 67 IAYATGTALPPPDLSSYSPADQQ--AILNTAIRRASNVCWPTPRPPMRIWPRRFDAPPGP 124
GT +S +PA ++ A+ T+ RAS P P WP +PP P
Sbjct 95 SGSKVGTQRKRNTGASKAPAKKRKPALSFTSPSRASASGSQDPALPQATWPAM--SPPAP 152
Query 125 CRASRSMPNSAMRHPQCRRCRRRTATLRRSSG 156
CR +S + + C TA RS G
Sbjct 153 CRQQAPAASSGVSAVTPQSCNTVTAASDRSDG 184
>gi|254428041|ref|ZP_05041748.1| undecaprenyl diphosphate synthase [Alcanivorax sp. DG881]
gi|196194210|gb|EDX89169.1| undecaprenyl diphosphate synthase [Alcanivorax sp. DG881]
Length=260
Score = 34.3 bits (77), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 28/82 (35%), Positives = 43/82 (53%), Gaps = 5/82 (6%)
Query 7 GGAAAEAAQVATHHTTVLLDHHAGACEAVARAAEKAAEEVAAIKMRLQVIRDAAREHHLT 66
G A AE+ A + TV++ + G +A AA AE+VAA +++ + I + HL+
Sbjct 126 GMAEAESLTGANNRMTVVIAVNYGGQWDIAHAARIMAEKVAAGEIQPEQISAESMAPHLS 185
Query 67 IAYATGTALPPPDLSSYSPADQ 88
+A LPPPDL + DQ
Sbjct 186 MA-----DLPPPDLLIRTGGDQ 202
Lambda K H
0.322 0.131 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 127750398496
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40