BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0965c

Length=139
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15840391|ref|NP_335428.1|  hypothetical protein MT0993 [Mycoba...   280    6e-74
gi|15608105|ref|NP_215480.1|  hypothetical protein Rv0965c [Mycob...   280    7e-74
gi|31792154|ref|NP_854647.1|  hypothetical protein Mb0990c [Mycob...   277    4e-73
gi|339293970|gb|AEJ46081.1|  hypothetical protein CCDC5079_0891 [...   236    9e-61
gi|308231682|ref|ZP_07413434.2|  hypothetical protein TMAG_00901 ...   218    3e-55
gi|289761100|ref|ZP_06520478.1|  conserved hypothetical protein [...   207    5e-52
gi|240169357|ref|ZP_04748016.1|  hypothetical protein MkanA1_0859...   134    6e-30
gi|340627798|ref|YP_004746250.1|  hypothetical protein MCAN_28251...  56.2    2e-06
gi|289444346|ref|ZP_06434090.1|  conserved hypothetical protein [...  55.8    2e-06
gi|15842336|ref|NP_337373.1|  hypothetical protein MT2867 [Mycoba...  49.3    2e-04
gi|254232893|ref|ZP_04926220.1|  conserved hypothetical protein [...  48.9    2e-04
gi|253798118|ref|YP_003031119.1|  hypothetical protein TBMG_01176...  48.9    2e-04
gi|240171301|ref|ZP_04749960.1|  hypothetical protein MkanA1_1846...  47.8    5e-04
gi|323718644|gb|EGB27808.1|  hypothetical protein TMMG_02804 [Myc...  47.4    8e-04
gi|15609935|ref|NP_217314.1|  hypothetical protein Rv2798c [Mycob...  47.0    0.001
gi|118617692|ref|YP_906024.1|  hypothetical protein MUL_2136 [Myc...  45.4    0.003
gi|169628919|ref|YP_001702568.1|  hypothetical protein MAB_1831 [...  43.1    0.013
gi|15791093|ref|NP_280917.1|  alanyl-tRNA synthetase [Halobacteri...  36.2    1.6  
gi|296393462|ref|YP_003658346.1|  hypothetical protein Srot_1042 ...  35.4    3.1  
gi|317505842|ref|ZP_07963686.1|  cell division protein [Segnilipa...  34.7    5.4  


>gi|15840391|ref|NP_335428.1| hypothetical protein MT0993 [Mycobacterium tuberculosis CDC1551]
 gi|13880559|gb|AAK45242.1| hypothetical protein MT0993 [Mycobacterium tuberculosis CDC1551]
Length=146

 Score =  280 bits (716),  Expect = 6e-74, Method: Compositional matrix adjust.
 Identities = 139/139 (100%), Positives = 139/139 (100%), Gaps = 0/139 (0%)

Query  1    MRVNRPQCARVPYSAESLVRVEASWYGRTLRAIPEVLSQVGYQQADHGESLLTSHHCCLG  60
            MRVNRPQCARVPYSAESLVRVEASWYGRTLRAIPEVLSQVGYQQADHGESLLTSHHCCLG
Sbjct  8    MRVNRPQCARVPYSAESLVRVEASWYGRTLRAIPEVLSQVGYQQADHGESLLTSHHCCLG  67

Query  61   AAEGARPGWVGSSAGALSGLLDSWAEASTAHAARIGDHSYGMHLAAVGFAEMEEHNAAAL  120
            AAEGARPGWVGSSAGALSGLLDSWAEASTAHAARIGDHSYGMHLAAVGFAEMEEHNAAAL
Sbjct  68   AAEGARPGWVGSSAGALSGLLDSWAEASTAHAARIGDHSYGMHLAAVGFAEMEEHNAAAL  127

Query  121  AAVYPTGGGSARCDGVDVS  139
            AAVYPTGGGSARCDGVDVS
Sbjct  128  AAVYPTGGGSARCDGVDVS  146


>gi|15608105|ref|NP_215480.1| hypothetical protein Rv0965c [Mycobacterium tuberculosis H37Rv]
 gi|148660745|ref|YP_001282268.1| hypothetical protein MRA_0972 [Mycobacterium tuberculosis H37Ra]
 gi|148822174|ref|YP_001286928.1| hypothetical protein TBFG_10983 [Mycobacterium tuberculosis F11]
 41 more sequence titles
 Length=139

 Score =  280 bits (715),  Expect = 7e-74, Method: Compositional matrix adjust.
 Identities = 139/139 (100%), Positives = 139/139 (100%), Gaps = 0/139 (0%)

Query  1    MRVNRPQCARVPYSAESLVRVEASWYGRTLRAIPEVLSQVGYQQADHGESLLTSHHCCLG  60
            MRVNRPQCARVPYSAESLVRVEASWYGRTLRAIPEVLSQVGYQQADHGESLLTSHHCCLG
Sbjct  1    MRVNRPQCARVPYSAESLVRVEASWYGRTLRAIPEVLSQVGYQQADHGESLLTSHHCCLG  60

Query  61   AAEGARPGWVGSSAGALSGLLDSWAEASTAHAARIGDHSYGMHLAAVGFAEMEEHNAAAL  120
            AAEGARPGWVGSSAGALSGLLDSWAEASTAHAARIGDHSYGMHLAAVGFAEMEEHNAAAL
Sbjct  61   AAEGARPGWVGSSAGALSGLLDSWAEASTAHAARIGDHSYGMHLAAVGFAEMEEHNAAAL  120

Query  121  AAVYPTGGGSARCDGVDVS  139
            AAVYPTGGGSARCDGVDVS
Sbjct  121  AAVYPTGGGSARCDGVDVS  139


>gi|31792154|ref|NP_854647.1| hypothetical protein Mb0990c [Mycobacterium bovis AF2122/97]
 gi|121636891|ref|YP_977114.1| hypothetical protein BCG_1019c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|224989362|ref|YP_002644049.1| hypothetical protein JTY_0990 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|31617742|emb|CAD93851.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121492538|emb|CAL71006.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|224772475|dbj|BAH25281.1| hypothetical protein JTY_0990 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|341600907|emb|CCC63578.1| conserved hypothetical protein [Mycobacterium bovis BCG str. 
Moreau RDJ]
Length=139

 Score =  277 bits (708),  Expect = 4e-73, Method: Compositional matrix adjust.
 Identities = 138/139 (99%), Positives = 138/139 (99%), Gaps = 0/139 (0%)

Query  1    MRVNRPQCARVPYSAESLVRVEASWYGRTLRAIPEVLSQVGYQQADHGESLLTSHHCCLG  60
            MRVNRPQCARVPYSAESLVRVEASWYGRTLRAIPEVLSQVGYQQADHGESLLTSHHCCLG
Sbjct  1    MRVNRPQCARVPYSAESLVRVEASWYGRTLRAIPEVLSQVGYQQADHGESLLTSHHCCLG  60

Query  61   AAEGARPGWVGSSAGALSGLLDSWAEASTAHAARIGDHSYGMHLAAVGFAEMEEHNAAAL  120
            AAEGARPGWVGSSAGALSGLLDSWAEASTAHAA IGDHSYGMHLAAVGFAEMEEHNAAAL
Sbjct  61   AAEGARPGWVGSSAGALSGLLDSWAEASTAHAAHIGDHSYGMHLAAVGFAEMEEHNAAAL  120

Query  121  AAVYPTGGGSARCDGVDVS  139
            AAVYPTGGGSARCDGVDVS
Sbjct  121  AAVYPTGGGSARCDGVDVS  139


>gi|339293970|gb|AEJ46081.1| hypothetical protein CCDC5079_0891 [Mycobacterium tuberculosis 
CCDC5079]
 gi|339297609|gb|AEJ49719.1| hypothetical protein CCDC5180_0882 [Mycobacterium tuberculosis 
CCDC5180]
Length=119

 Score =  236 bits (602),  Expect = 9e-61, Method: Compositional matrix adjust.
 Identities = 118/119 (99%), Positives = 119/119 (100%), Gaps = 0/119 (0%)

Query  21   VEASWYGRTLRAIPEVLSQVGYQQADHGESLLTSHHCCLGAAEGARPGWVGSSAGALSGL  80
            +EASWYGRTLRAIPEVLSQVGYQQADHGESLLTSHHCCLGAAEGARPGWVGSSAGALSGL
Sbjct  1    MEASWYGRTLRAIPEVLSQVGYQQADHGESLLTSHHCCLGAAEGARPGWVGSSAGALSGL  60

Query  81   LDSWAEASTAHAARIGDHSYGMHLAAVGFAEMEEHNAAALAAVYPTGGGSARCDGVDVS  139
            LDSWAEASTAHAARIGDHSYGMHLAAVGFAEMEEHNAAALAAVYPTGGGSARCDGVDVS
Sbjct  61   LDSWAEASTAHAARIGDHSYGMHLAAVGFAEMEEHNAAALAAVYPTGGGSARCDGVDVS  119


>gi|308231682|ref|ZP_07413434.2| hypothetical protein TMAG_00901 [Mycobacterium tuberculosis SUMu001]
 gi|308370114|ref|ZP_07420325.2| hypothetical protein TMBG_01650 [Mycobacterium tuberculosis SUMu002]
 gi|308370548|ref|ZP_07421970.2| hypothetical protein TMCG_04040 [Mycobacterium tuberculosis SUMu003]
 22 more sequence titles
 Length=110

 Score =  218 bits (555),  Expect = 3e-55, Method: Compositional matrix adjust.
 Identities = 109/110 (99%), Positives = 110/110 (100%), Gaps = 0/110 (0%)

Query  30   LRAIPEVLSQVGYQQADHGESLLTSHHCCLGAAEGARPGWVGSSAGALSGLLDSWAEAST  89
            +RAIPEVLSQVGYQQADHGESLLTSHHCCLGAAEGARPGWVGSSAGALSGLLDSWAEAST
Sbjct  1    MRAIPEVLSQVGYQQADHGESLLTSHHCCLGAAEGARPGWVGSSAGALSGLLDSWAEAST  60

Query  90   AHAARIGDHSYGMHLAAVGFAEMEEHNAAALAAVYPTGGGSARCDGVDVS  139
            AHAARIGDHSYGMHLAAVGFAEMEEHNAAALAAVYPTGGGSARCDGVDVS
Sbjct  61   AHAARIGDHSYGMHLAAVGFAEMEEHNAAALAAVYPTGGGSARCDGVDVS  110


>gi|289761100|ref|ZP_06520478.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|289708606|gb|EFD72622.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
Length=120

 Score =  207 bits (526),  Expect = 5e-52, Method: Compositional matrix adjust.
 Identities = 107/113 (95%), Positives = 108/113 (96%), Gaps = 4/113 (3%)

Query  27   GRTLRAIPEVLSQVGYQQADHGESLLTSHHCCLGAAEGARPGWVGSSAGALSGLLDSWAE  86
            GR L+    VLSQVGYQQADHGESLLTSHHCCLGAAEGARPGWVGSSAGALSGLLDSWAE
Sbjct  12   GRFLK----VLSQVGYQQADHGESLLTSHHCCLGAAEGARPGWVGSSAGALSGLLDSWAE  67

Query  87   ASTAHAARIGDHSYGMHLAAVGFAEMEEHNAAALAAVYPTGGGSARCDGVDVS  139
            ASTAHAARIGDHSYGMHLAAVGFAEMEEHNAAALAAVYPTGGGSARCDGVDVS
Sbjct  68   ASTAHAARIGDHSYGMHLAAVGFAEMEEHNAAALAAVYPTGGGSARCDGVDVS  120


>gi|240169357|ref|ZP_04748016.1| hypothetical protein MkanA1_08591 [Mycobacterium kansasii ATCC 
12478]
Length=114

 Score =  134 bits (336),  Expect = 6e-30, Method: Compositional matrix adjust.
 Identities = 76/112 (68%), Positives = 85/112 (76%), Gaps = 0/112 (0%)

Query  28   RTLRAIPEVLSQVGYQQADHGESLLTSHHCCLGAAEGARPGWVGSSAGALSGLLDSWAEA  87
            + LR +PEVL++VGY+ A+HGESLL  H  C GAAEGAR GWVGSSAGALSGLL SW   
Sbjct  3    KPLRVVPEVLTRVGYELANHGESLLVLHQSCHGAAEGARSGWVGSSAGALSGLLGSWETV  62

Query  88   STAHAARIGDHSYGMHLAAVGFAEMEEHNAAALAAVYPTGGGSARCDGVDVS  139
            S  HA R G+HS GMHLAAVGFAEM++ NAAALAAV    G S R DG DVS
Sbjct  63   SATHADRFGEHSCGMHLAAVGFAEMDQSNAAALAAVRAQAGSSGRFDGADVS  114


>gi|340627798|ref|YP_004746250.1| hypothetical protein MCAN_28251 [Mycobacterium canettii CIPT 
140010059]
 gi|340005988|emb|CCC45156.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=108

 Score = 56.2 bits (134),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 34/78 (44%), Positives = 41/78 (53%), Gaps = 0/78 (0%)

Query  30   LRAIPEVLSQVGYQQADHGESLLTSHHCCLGAAEGARPGWVGSSAGALSGLLDSWAEAST  89
            LR  PE       +    GESL T H       + A+ GW G+SA AL+  LD W EAS 
Sbjct  2    LRIDPEQWMHSATRVTTQGESLATGHLSSDYRMQAAQFGWQGASAMALNAKLDDWLEASR  61

Query  90   AHAARIGDHSYGMHLAAV  107
            A   RIGDH+YG+  AA 
Sbjct  62   ALLTRIGDHAYGLREAAF  79


>gi|289444346|ref|ZP_06434090.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289417265|gb|EFD14505.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
Length=113

 Score = 55.8 bits (133),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 37/96 (39%), Positives = 48/96 (50%), Gaps = 2/96 (2%)

Query  28   RTLRAIPEVLSQVGYQQADHGESLLTSHHCCLGAAEGARPGWVGSSAGALSGLLDSWAEA  87
            R  +  PE       Q    GE L   H       + A+ GW G+SA AL+  +D W +A
Sbjct  7    RVFQISPEQWMHSAAQVTTQGEGLAVGHLSSDYRMQAAQFGWQGASAMALNAKMDDWLDA  66

Query  88   STAHAARIGDHSYGMHLAAVGFAEMEEHNAAALAAV  123
            S A   RIGDH++G+  AA+  AE E   A ALA V
Sbjct  67   SRALLTRIGDHAFGLQEAAIQHAEAE--RAQALAQV  100


>gi|15842336|ref|NP_337373.1| hypothetical protein MT2867 [Mycobacterium tuberculosis CDC1551]
 gi|13882632|gb|AAK47187.1| hypothetical protein MT2867 [Mycobacterium tuberculosis CDC1551]
Length=115

 Score = 49.3 bits (116),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 37/75 (50%), Gaps = 0/75 (0%)

Query  28   RTLRAIPEVLSQVGYQQADHGESLLTSHHCCLGAAEGARPGWVGSSAGALSGLLDSWAEA  87
            R  +  PE       Q    GE L   H       + A+ GW G+SA AL+  +D W +A
Sbjct  7    RVFQISPEQWMHSAAQVTTQGEGLTVGHLSSDYRMQAAQFGWQGASAMALNAKMDDWLDA  66

Query  88   STAHAARIGDHSYGM  102
            S A   RIGDH++G+
Sbjct  67   SRALLTRIGDHAFGL  81


>gi|254232893|ref|ZP_04926220.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|124601952|gb|EAY60962.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
Length=115

 Score = 48.9 bits (115),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 37/75 (50%), Gaps = 0/75 (0%)

Query  28   RTLRAIPEVLSQVGYQQADHGESLLTSHHCCLGAAEGARPGWVGSSAGALSGLLDSWAEA  87
            R  +  PE       Q    GE L   H       + A+ GW G+SA AL+  +D W +A
Sbjct  7    RVFQISPEQWMHSAAQVTTQGEGLAVGHLSSDYRMQAAQFGWQGASAMALNAKMDDWLDA  66

Query  88   STAHAARIGDHSYGM  102
            S A   RIGDH++G+
Sbjct  67   SRALLTRIGDHAFGL  81


>gi|253798118|ref|YP_003031119.1| hypothetical protein TBMG_01176 [Mycobacterium tuberculosis KZN 
1435]
 gi|254365449|ref|ZP_04981494.1| conserved hypothetical protein [Mycobacterium tuberculosis str. 
Haarlem]
 gi|308232243|ref|ZP_07415416.2| hypothetical protein TMAG_03180 [Mycobacterium tuberculosis SUMu001]
 25 more sequence titles
 Length=115

 Score = 48.9 bits (115),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 37/75 (50%), Gaps = 0/75 (0%)

Query  28   RTLRAIPEVLSQVGYQQADHGESLLTSHHCCLGAAEGARPGWVGSSAGALSGLLDSWAEA  87
            R  +  PE       Q    GE L   H       + A+ GW G+SA AL+  +D W +A
Sbjct  7    RVFQISPEQWMHSAAQVTTQGEGLAVGHLSSDYRMQAAQFGWQGASAMALNAKMDDWLDA  66

Query  88   STAHAARIGDHSYGM  102
            S A   RIGDH++G+
Sbjct  67   SRALLTRIGDHAFGL  81


>gi|240171301|ref|ZP_04749960.1| hypothetical protein MkanA1_18461 [Mycobacterium kansasii ATCC 
12478]
Length=106

 Score = 47.8 bits (112),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 36/86 (42%), Positives = 45/86 (53%), Gaps = 0/86 (0%)

Query  47   HGESLLTSHHCCLGAAEGARPGWVGSSAGALSGLLDSWAEASTAHAARIGDHSYGMHLAA  106
             GE L T+H       + A+ GW G+SA A    L  W E S A   R+GDH+ G+H AA
Sbjct  19   QGEGLATAHLTSDYRLQSAQVGWQGASATAFDAKLGDWLEVSRALLTRVGDHARGLHEAA  78

Query  107  VGFAEMEEHNAAALAAVYPTGGGSAR  132
            V  A  EE  A ALA V  +  G+ R
Sbjct  79   VRHAAAEEERAHALARVGASAVGTTR  104


>gi|323718644|gb|EGB27808.1| hypothetical protein TMMG_02804 [Mycobacterium tuberculosis CDC1551A]
Length=108

 Score = 47.4 bits (111),  Expect = 8e-04, Method: Compositional matrix adjust.
 Identities = 26/69 (38%), Positives = 35/69 (51%), Gaps = 0/69 (0%)

Query  34   PEVLSQVGYQQADHGESLLTSHHCCLGAAEGARPGWVGSSAGALSGLLDSWAEASTAHAA  93
            PE       Q    GE L   H       + A+ GW G+SA AL+  +D W +AS A   
Sbjct  6    PEQWMHSAAQVTTQGEGLTVGHLSSDYRMQAAQFGWQGASAMALNAKMDDWLDASRALLT  65

Query  94   RIGDHSYGM  102
            RIGDH++G+
Sbjct  66   RIGDHAFGL  74


>gi|15609935|ref|NP_217314.1| hypothetical protein Rv2798c [Mycobacterium tuberculosis H37Rv]
 gi|31793974|ref|NP_856467.1| hypothetical protein Mb2821c [Mycobacterium bovis AF2122/97]
 gi|121638678|ref|YP_978902.1| hypothetical protein BCG_2816c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 41 more sequence titles
 Length=108

 Score = 47.0 bits (110),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 26/69 (38%), Positives = 35/69 (51%), Gaps = 0/69 (0%)

Query  34   PEVLSQVGYQQADHGESLLTSHHCCLGAAEGARPGWVGSSAGALSGLLDSWAEASTAHAA  93
            PE       Q    GE L   H       + A+ GW G+SA AL+  +D W +AS A   
Sbjct  6    PEQWMHSAAQVTTQGEGLAVGHLSSDYRMQAAQFGWQGASAMALNAKMDDWLDASRALLT  65

Query  94   RIGDHSYGM  102
            RIGDH++G+
Sbjct  66   RIGDHAFGL  74


>gi|118617692|ref|YP_906024.1| hypothetical protein MUL_2136 [Mycobacterium ulcerans Agy99]
 gi|183981925|ref|YP_001850216.1| hypothetical protein MMAR_1912 [Mycobacterium marinum M]
 gi|118569802|gb|ABL04553.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
 gi|183175251|gb|ACC40361.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=103

 Score = 45.4 bits (106),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 24/57 (43%), Positives = 32/57 (57%), Gaps = 0/57 (0%)

Query  47   HGESLLTSHHCCLGAAEGARPGWVGSSAGALSGLLDSWAEASTAHAARIGDHSYGMH  103
             GE L   H       + A+ GW G+SA AL+  +D W E S A  +RIGDH+ G+H
Sbjct  19   QGEDLAAGHLSSDHRIQAAQSGWQGASALALNAAMDDWLEMSRALLSRIGDHARGLH  75


>gi|169628919|ref|YP_001702568.1| hypothetical protein MAB_1831 [Mycobacterium abscessus ATCC 19977]
 gi|169240886|emb|CAM61914.1| Hypothetical protein MAB_1831 [Mycobacterium abscessus]
Length=105

 Score = 43.1 bits (100),  Expect = 0.013, Method: Compositional matrix adjust.
 Identities = 34/112 (31%), Positives = 46/112 (42%), Gaps = 20/112 (17%)

Query  29   TLRAIPEVLSQVGYQQADHGESLLTS----------HHCCLGAAEGARPGWVGSSAGALS  78
            T    PE L +       HGES+L +          HH  +   E A  GW+G SA AL 
Sbjct  4    TFNVRPEDLHR-------HGESILDAVKISRDEHAGHHDQI---EEASSGWIGKSASALV  53

Query  79   GLLDSWAEASTAHAARIGDHSYGMHLAAVGFAEMEEHNAAALAAVYPTGGGS  130
             L  +W +       ++     GM   A  FA MEE N  ++    P  GG+
Sbjct  54   DLHKAWVDQRATLHHQLSQVGIGMQEDAKTFAAMEEQNRGSIGKASPANGGA  105


>gi|15791093|ref|NP_280917.1| alanyl-tRNA synthetase [Halobacterium sp. NRC-1]
 gi|169236845|ref|YP_001690045.1| alanyl-tRNA synthetase [Halobacterium salinarum R1]
 gi|22096204|sp|Q9HN24.1|SYA_HALSA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA 
ligase; Short=AlaRS
 gi|205830064|sp|B0R7I0.1|SYA_HALS3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA 
ligase; Short=AlaRS
 gi|10581694|gb|AAG20397.1| alanyl-tRNA synthetase [Halobacterium sp. NRC-1]
 gi|167727911|emb|CAP14699.1| alanine--tRNA ligase [Halobacterium salinarum R1]
Length=929

 Score = 36.2 bits (82),  Expect = 1.6, Method: Compositional matrix adjust.
 Identities = 27/92 (30%), Positives = 41/92 (45%), Gaps = 4/92 (4%)

Query  7    QCARVPY----SAESLVRVEASWYGRTLRAIPEVLSQVGYQQADHGESLLTSHHCCLGAA  62
            Q  R+ Y    +  S+VR E   YG TL      + Q+  + AD GE + T     L  +
Sbjct  399  QADRLGYENRDTIRSIVRSEVEKYGETLERGGRRVEQLAEEYADRGEPVPTDELIELYDS  458

Query  63   EGARPGWVGSSAGALSGLLDSWAEASTAHAAR  94
             G +PG V   A  +   +D+  +  +  AAR
Sbjct  459  HGIQPGMVADIAADVGATVDAPDDFYSLVAAR  490


>gi|296393462|ref|YP_003658346.1| hypothetical protein Srot_1042 [Segniliparus rotundus DSM 44985]
 gi|296180609|gb|ADG97515.1| helix-turn-helix domain protein [Segniliparus rotundus DSM 44985]
Length=188

 Score = 35.4 bits (80),  Expect = 3.1, Method: Compositional matrix adjust.
 Identities = 31/101 (31%), Positives = 43/101 (43%), Gaps = 7/101 (6%)

Query  3    VNRPQ--CARVPYSAESLVRVEASWYGRTLRAIPEVLSQVGYQQADHGESLLTSHHCCLG  60
            +N PQ    R+   A SL   EA+ +   LR   EVL     + +D       + H    
Sbjct  45   LNLPQQTIVRIEQGARSLKFSEATAFASALRVPLEVLQAQDSEASDS----WINEHVAFS  100

Query  61   AAEGARPGWVGSSAGALSGLLDSWAEASTAHAARIGDHSYG  101
            A + A    V S  GA   +  +W+EAS  H   IG H +G
Sbjct  101  AFQEAVKDAVASIKGAEEKM-KAWSEASEEHGREIGLHVFG  140


>gi|317505842|ref|ZP_07963686.1| cell division protein [Segniliparus rugosus ATCC BAA-974]
 gi|316255857|gb|EFV15083.1| cell division protein [Segniliparus rugosus ATCC BAA-974]
Length=99

 Score = 34.7 bits (78),  Expect = 5.4, Method: Compositional matrix adjust.
 Identities = 24/85 (29%), Positives = 40/85 (48%), Gaps = 0/85 (0%)

Query  36   VLSQVGYQQADHGESLLTSHHCCLGAAEGARPGWVGSSAGALSGLLDSWAEASTAHAARI  95
            +LSQ      +H +     +    G  + A+  W G++AG+ +   + W EAS A A  +
Sbjct  11   ILSQAASSFEEHHQQYNALNAQLQGLVDDAQGQWRGAAAGSFATSANKWHEASAAIAQIL  70

Query  96   GDHSYGMHLAAVGFAEMEEHNAAAL  120
             D    +  + V +  +EE  AAAL
Sbjct  71   NDIQENLQSSGVDYERVEEEQAAAL  95



Lambda     K      H
   0.316    0.129    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 131443546824




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40