BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0965c
Length=139
Score E
Sequences producing significant alignments: (Bits) Value
gi|15840391|ref|NP_335428.1| hypothetical protein MT0993 [Mycoba... 280 6e-74
gi|15608105|ref|NP_215480.1| hypothetical protein Rv0965c [Mycob... 280 7e-74
gi|31792154|ref|NP_854647.1| hypothetical protein Mb0990c [Mycob... 277 4e-73
gi|339293970|gb|AEJ46081.1| hypothetical protein CCDC5079_0891 [... 236 9e-61
gi|308231682|ref|ZP_07413434.2| hypothetical protein TMAG_00901 ... 218 3e-55
gi|289761100|ref|ZP_06520478.1| conserved hypothetical protein [... 207 5e-52
gi|240169357|ref|ZP_04748016.1| hypothetical protein MkanA1_0859... 134 6e-30
gi|340627798|ref|YP_004746250.1| hypothetical protein MCAN_28251... 56.2 2e-06
gi|289444346|ref|ZP_06434090.1| conserved hypothetical protein [... 55.8 2e-06
gi|15842336|ref|NP_337373.1| hypothetical protein MT2867 [Mycoba... 49.3 2e-04
gi|254232893|ref|ZP_04926220.1| conserved hypothetical protein [... 48.9 2e-04
gi|253798118|ref|YP_003031119.1| hypothetical protein TBMG_01176... 48.9 2e-04
gi|240171301|ref|ZP_04749960.1| hypothetical protein MkanA1_1846... 47.8 5e-04
gi|323718644|gb|EGB27808.1| hypothetical protein TMMG_02804 [Myc... 47.4 8e-04
gi|15609935|ref|NP_217314.1| hypothetical protein Rv2798c [Mycob... 47.0 0.001
gi|118617692|ref|YP_906024.1| hypothetical protein MUL_2136 [Myc... 45.4 0.003
gi|169628919|ref|YP_001702568.1| hypothetical protein MAB_1831 [... 43.1 0.013
gi|15791093|ref|NP_280917.1| alanyl-tRNA synthetase [Halobacteri... 36.2 1.6
gi|296393462|ref|YP_003658346.1| hypothetical protein Srot_1042 ... 35.4 3.1
gi|317505842|ref|ZP_07963686.1| cell division protein [Segnilipa... 34.7 5.4
>gi|15840391|ref|NP_335428.1| hypothetical protein MT0993 [Mycobacterium tuberculosis CDC1551]
gi|13880559|gb|AAK45242.1| hypothetical protein MT0993 [Mycobacterium tuberculosis CDC1551]
Length=146
Score = 280 bits (716), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 139/139 (100%), Positives = 139/139 (100%), Gaps = 0/139 (0%)
Query 1 MRVNRPQCARVPYSAESLVRVEASWYGRTLRAIPEVLSQVGYQQADHGESLLTSHHCCLG 60
MRVNRPQCARVPYSAESLVRVEASWYGRTLRAIPEVLSQVGYQQADHGESLLTSHHCCLG
Sbjct 8 MRVNRPQCARVPYSAESLVRVEASWYGRTLRAIPEVLSQVGYQQADHGESLLTSHHCCLG 67
Query 61 AAEGARPGWVGSSAGALSGLLDSWAEASTAHAARIGDHSYGMHLAAVGFAEMEEHNAAAL 120
AAEGARPGWVGSSAGALSGLLDSWAEASTAHAARIGDHSYGMHLAAVGFAEMEEHNAAAL
Sbjct 68 AAEGARPGWVGSSAGALSGLLDSWAEASTAHAARIGDHSYGMHLAAVGFAEMEEHNAAAL 127
Query 121 AAVYPTGGGSARCDGVDVS 139
AAVYPTGGGSARCDGVDVS
Sbjct 128 AAVYPTGGGSARCDGVDVS 146
>gi|15608105|ref|NP_215480.1| hypothetical protein Rv0965c [Mycobacterium tuberculosis H37Rv]
gi|148660745|ref|YP_001282268.1| hypothetical protein MRA_0972 [Mycobacterium tuberculosis H37Ra]
gi|148822174|ref|YP_001286928.1| hypothetical protein TBFG_10983 [Mycobacterium tuberculosis F11]
41 more sequence titles
Length=139
Score = 280 bits (715), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 139/139 (100%), Positives = 139/139 (100%), Gaps = 0/139 (0%)
Query 1 MRVNRPQCARVPYSAESLVRVEASWYGRTLRAIPEVLSQVGYQQADHGESLLTSHHCCLG 60
MRVNRPQCARVPYSAESLVRVEASWYGRTLRAIPEVLSQVGYQQADHGESLLTSHHCCLG
Sbjct 1 MRVNRPQCARVPYSAESLVRVEASWYGRTLRAIPEVLSQVGYQQADHGESLLTSHHCCLG 60
Query 61 AAEGARPGWVGSSAGALSGLLDSWAEASTAHAARIGDHSYGMHLAAVGFAEMEEHNAAAL 120
AAEGARPGWVGSSAGALSGLLDSWAEASTAHAARIGDHSYGMHLAAVGFAEMEEHNAAAL
Sbjct 61 AAEGARPGWVGSSAGALSGLLDSWAEASTAHAARIGDHSYGMHLAAVGFAEMEEHNAAAL 120
Query 121 AAVYPTGGGSARCDGVDVS 139
AAVYPTGGGSARCDGVDVS
Sbjct 121 AAVYPTGGGSARCDGVDVS 139
>gi|31792154|ref|NP_854647.1| hypothetical protein Mb0990c [Mycobacterium bovis AF2122/97]
gi|121636891|ref|YP_977114.1| hypothetical protein BCG_1019c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224989362|ref|YP_002644049.1| hypothetical protein JTY_0990 [Mycobacterium bovis BCG str. Tokyo
172]
gi|31617742|emb|CAD93851.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
gi|121492538|emb|CAL71006.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224772475|dbj|BAH25281.1| hypothetical protein JTY_0990 [Mycobacterium bovis BCG str. Tokyo
172]
gi|341600907|emb|CCC63578.1| conserved hypothetical protein [Mycobacterium bovis BCG str.
Moreau RDJ]
Length=139
Score = 277 bits (708), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 138/139 (99%), Positives = 138/139 (99%), Gaps = 0/139 (0%)
Query 1 MRVNRPQCARVPYSAESLVRVEASWYGRTLRAIPEVLSQVGYQQADHGESLLTSHHCCLG 60
MRVNRPQCARVPYSAESLVRVEASWYGRTLRAIPEVLSQVGYQQADHGESLLTSHHCCLG
Sbjct 1 MRVNRPQCARVPYSAESLVRVEASWYGRTLRAIPEVLSQVGYQQADHGESLLTSHHCCLG 60
Query 61 AAEGARPGWVGSSAGALSGLLDSWAEASTAHAARIGDHSYGMHLAAVGFAEMEEHNAAAL 120
AAEGARPGWVGSSAGALSGLLDSWAEASTAHAA IGDHSYGMHLAAVGFAEMEEHNAAAL
Sbjct 61 AAEGARPGWVGSSAGALSGLLDSWAEASTAHAAHIGDHSYGMHLAAVGFAEMEEHNAAAL 120
Query 121 AAVYPTGGGSARCDGVDVS 139
AAVYPTGGGSARCDGVDVS
Sbjct 121 AAVYPTGGGSARCDGVDVS 139
>gi|339293970|gb|AEJ46081.1| hypothetical protein CCDC5079_0891 [Mycobacterium tuberculosis
CCDC5079]
gi|339297609|gb|AEJ49719.1| hypothetical protein CCDC5180_0882 [Mycobacterium tuberculosis
CCDC5180]
Length=119
Score = 236 bits (602), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 118/119 (99%), Positives = 119/119 (100%), Gaps = 0/119 (0%)
Query 21 VEASWYGRTLRAIPEVLSQVGYQQADHGESLLTSHHCCLGAAEGARPGWVGSSAGALSGL 80
+EASWYGRTLRAIPEVLSQVGYQQADHGESLLTSHHCCLGAAEGARPGWVGSSAGALSGL
Sbjct 1 MEASWYGRTLRAIPEVLSQVGYQQADHGESLLTSHHCCLGAAEGARPGWVGSSAGALSGL 60
Query 81 LDSWAEASTAHAARIGDHSYGMHLAAVGFAEMEEHNAAALAAVYPTGGGSARCDGVDVS 139
LDSWAEASTAHAARIGDHSYGMHLAAVGFAEMEEHNAAALAAVYPTGGGSARCDGVDVS
Sbjct 61 LDSWAEASTAHAARIGDHSYGMHLAAVGFAEMEEHNAAALAAVYPTGGGSARCDGVDVS 119
>gi|308231682|ref|ZP_07413434.2| hypothetical protein TMAG_00901 [Mycobacterium tuberculosis SUMu001]
gi|308370114|ref|ZP_07420325.2| hypothetical protein TMBG_01650 [Mycobacterium tuberculosis SUMu002]
gi|308370548|ref|ZP_07421970.2| hypothetical protein TMCG_04040 [Mycobacterium tuberculosis SUMu003]
22 more sequence titles
Length=110
Score = 218 bits (555), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 109/110 (99%), Positives = 110/110 (100%), Gaps = 0/110 (0%)
Query 30 LRAIPEVLSQVGYQQADHGESLLTSHHCCLGAAEGARPGWVGSSAGALSGLLDSWAEAST 89
+RAIPEVLSQVGYQQADHGESLLTSHHCCLGAAEGARPGWVGSSAGALSGLLDSWAEAST
Sbjct 1 MRAIPEVLSQVGYQQADHGESLLTSHHCCLGAAEGARPGWVGSSAGALSGLLDSWAEAST 60
Query 90 AHAARIGDHSYGMHLAAVGFAEMEEHNAAALAAVYPTGGGSARCDGVDVS 139
AHAARIGDHSYGMHLAAVGFAEMEEHNAAALAAVYPTGGGSARCDGVDVS
Sbjct 61 AHAARIGDHSYGMHLAAVGFAEMEEHNAAALAAVYPTGGGSARCDGVDVS 110
>gi|289761100|ref|ZP_06520478.1| conserved hypothetical protein [Mycobacterium tuberculosis GM
1503]
gi|289708606|gb|EFD72622.1| conserved hypothetical protein [Mycobacterium tuberculosis GM
1503]
Length=120
Score = 207 bits (526), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 107/113 (95%), Positives = 108/113 (96%), Gaps = 4/113 (3%)
Query 27 GRTLRAIPEVLSQVGYQQADHGESLLTSHHCCLGAAEGARPGWVGSSAGALSGLLDSWAE 86
GR L+ VLSQVGYQQADHGESLLTSHHCCLGAAEGARPGWVGSSAGALSGLLDSWAE
Sbjct 12 GRFLK----VLSQVGYQQADHGESLLTSHHCCLGAAEGARPGWVGSSAGALSGLLDSWAE 67
Query 87 ASTAHAARIGDHSYGMHLAAVGFAEMEEHNAAALAAVYPTGGGSARCDGVDVS 139
ASTAHAARIGDHSYGMHLAAVGFAEMEEHNAAALAAVYPTGGGSARCDGVDVS
Sbjct 68 ASTAHAARIGDHSYGMHLAAVGFAEMEEHNAAALAAVYPTGGGSARCDGVDVS 120
>gi|240169357|ref|ZP_04748016.1| hypothetical protein MkanA1_08591 [Mycobacterium kansasii ATCC
12478]
Length=114
Score = 134 bits (336), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 76/112 (68%), Positives = 85/112 (76%), Gaps = 0/112 (0%)
Query 28 RTLRAIPEVLSQVGYQQADHGESLLTSHHCCLGAAEGARPGWVGSSAGALSGLLDSWAEA 87
+ LR +PEVL++VGY+ A+HGESLL H C GAAEGAR GWVGSSAGALSGLL SW
Sbjct 3 KPLRVVPEVLTRVGYELANHGESLLVLHQSCHGAAEGARSGWVGSSAGALSGLLGSWETV 62
Query 88 STAHAARIGDHSYGMHLAAVGFAEMEEHNAAALAAVYPTGGGSARCDGVDVS 139
S HA R G+HS GMHLAAVGFAEM++ NAAALAAV G S R DG DVS
Sbjct 63 SATHADRFGEHSCGMHLAAVGFAEMDQSNAAALAAVRAQAGSSGRFDGADVS 114
>gi|340627798|ref|YP_004746250.1| hypothetical protein MCAN_28251 [Mycobacterium canettii CIPT
140010059]
gi|340005988|emb|CCC45156.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=108
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/78 (44%), Positives = 41/78 (53%), Gaps = 0/78 (0%)
Query 30 LRAIPEVLSQVGYQQADHGESLLTSHHCCLGAAEGARPGWVGSSAGALSGLLDSWAEAST 89
LR PE + GESL T H + A+ GW G+SA AL+ LD W EAS
Sbjct 2 LRIDPEQWMHSATRVTTQGESLATGHLSSDYRMQAAQFGWQGASAMALNAKLDDWLEASR 61
Query 90 AHAARIGDHSYGMHLAAV 107
A RIGDH+YG+ AA
Sbjct 62 ALLTRIGDHAYGLREAAF 79
>gi|289444346|ref|ZP_06434090.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289417265|gb|EFD14505.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
Length=113
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/96 (39%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query 28 RTLRAIPEVLSQVGYQQADHGESLLTSHHCCLGAAEGARPGWVGSSAGALSGLLDSWAEA 87
R + PE Q GE L H + A+ GW G+SA AL+ +D W +A
Sbjct 7 RVFQISPEQWMHSAAQVTTQGEGLAVGHLSSDYRMQAAQFGWQGASAMALNAKMDDWLDA 66
Query 88 STAHAARIGDHSYGMHLAAVGFAEMEEHNAAALAAV 123
S A RIGDH++G+ AA+ AE E A ALA V
Sbjct 67 SRALLTRIGDHAFGLQEAAIQHAEAE--RAQALAQV 100
>gi|15842336|ref|NP_337373.1| hypothetical protein MT2867 [Mycobacterium tuberculosis CDC1551]
gi|13882632|gb|AAK47187.1| hypothetical protein MT2867 [Mycobacterium tuberculosis CDC1551]
Length=115
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 37/75 (50%), Gaps = 0/75 (0%)
Query 28 RTLRAIPEVLSQVGYQQADHGESLLTSHHCCLGAAEGARPGWVGSSAGALSGLLDSWAEA 87
R + PE Q GE L H + A+ GW G+SA AL+ +D W +A
Sbjct 7 RVFQISPEQWMHSAAQVTTQGEGLTVGHLSSDYRMQAAQFGWQGASAMALNAKMDDWLDA 66
Query 88 STAHAARIGDHSYGM 102
S A RIGDH++G+
Sbjct 67 SRALLTRIGDHAFGL 81
>gi|254232893|ref|ZP_04926220.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|124601952|gb|EAY60962.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
Length=115
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 37/75 (50%), Gaps = 0/75 (0%)
Query 28 RTLRAIPEVLSQVGYQQADHGESLLTSHHCCLGAAEGARPGWVGSSAGALSGLLDSWAEA 87
R + PE Q GE L H + A+ GW G+SA AL+ +D W +A
Sbjct 7 RVFQISPEQWMHSAAQVTTQGEGLAVGHLSSDYRMQAAQFGWQGASAMALNAKMDDWLDA 66
Query 88 STAHAARIGDHSYGM 102
S A RIGDH++G+
Sbjct 67 SRALLTRIGDHAFGL 81
>gi|253798118|ref|YP_003031119.1| hypothetical protein TBMG_01176 [Mycobacterium tuberculosis KZN
1435]
gi|254365449|ref|ZP_04981494.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|308232243|ref|ZP_07415416.2| hypothetical protein TMAG_03180 [Mycobacterium tuberculosis SUMu001]
25 more sequence titles
Length=115
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 37/75 (50%), Gaps = 0/75 (0%)
Query 28 RTLRAIPEVLSQVGYQQADHGESLLTSHHCCLGAAEGARPGWVGSSAGALSGLLDSWAEA 87
R + PE Q GE L H + A+ GW G+SA AL+ +D W +A
Sbjct 7 RVFQISPEQWMHSAAQVTTQGEGLAVGHLSSDYRMQAAQFGWQGASAMALNAKMDDWLDA 66
Query 88 STAHAARIGDHSYGM 102
S A RIGDH++G+
Sbjct 67 SRALLTRIGDHAFGL 81
>gi|240171301|ref|ZP_04749960.1| hypothetical protein MkanA1_18461 [Mycobacterium kansasii ATCC
12478]
Length=106
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/86 (42%), Positives = 45/86 (53%), Gaps = 0/86 (0%)
Query 47 HGESLLTSHHCCLGAAEGARPGWVGSSAGALSGLLDSWAEASTAHAARIGDHSYGMHLAA 106
GE L T+H + A+ GW G+SA A L W E S A R+GDH+ G+H AA
Sbjct 19 QGEGLATAHLTSDYRLQSAQVGWQGASATAFDAKLGDWLEVSRALLTRVGDHARGLHEAA 78
Query 107 VGFAEMEEHNAAALAAVYPTGGGSAR 132
V A EE A ALA V + G+ R
Sbjct 79 VRHAAAEEERAHALARVGASAVGTTR 104
>gi|323718644|gb|EGB27808.1| hypothetical protein TMMG_02804 [Mycobacterium tuberculosis CDC1551A]
Length=108
Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/69 (38%), Positives = 35/69 (51%), Gaps = 0/69 (0%)
Query 34 PEVLSQVGYQQADHGESLLTSHHCCLGAAEGARPGWVGSSAGALSGLLDSWAEASTAHAA 93
PE Q GE L H + A+ GW G+SA AL+ +D W +AS A
Sbjct 6 PEQWMHSAAQVTTQGEGLTVGHLSSDYRMQAAQFGWQGASAMALNAKMDDWLDASRALLT 65
Query 94 RIGDHSYGM 102
RIGDH++G+
Sbjct 66 RIGDHAFGL 74
>gi|15609935|ref|NP_217314.1| hypothetical protein Rv2798c [Mycobacterium tuberculosis H37Rv]
gi|31793974|ref|NP_856467.1| hypothetical protein Mb2821c [Mycobacterium bovis AF2122/97]
gi|121638678|ref|YP_978902.1| hypothetical protein BCG_2816c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
41 more sequence titles
Length=108
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/69 (38%), Positives = 35/69 (51%), Gaps = 0/69 (0%)
Query 34 PEVLSQVGYQQADHGESLLTSHHCCLGAAEGARPGWVGSSAGALSGLLDSWAEASTAHAA 93
PE Q GE L H + A+ GW G+SA AL+ +D W +AS A
Sbjct 6 PEQWMHSAAQVTTQGEGLAVGHLSSDYRMQAAQFGWQGASAMALNAKMDDWLDASRALLT 65
Query 94 RIGDHSYGM 102
RIGDH++G+
Sbjct 66 RIGDHAFGL 74
>gi|118617692|ref|YP_906024.1| hypothetical protein MUL_2136 [Mycobacterium ulcerans Agy99]
gi|183981925|ref|YP_001850216.1| hypothetical protein MMAR_1912 [Mycobacterium marinum M]
gi|118569802|gb|ABL04553.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
gi|183175251|gb|ACC40361.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=103
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/57 (43%), Positives = 32/57 (57%), Gaps = 0/57 (0%)
Query 47 HGESLLTSHHCCLGAAEGARPGWVGSSAGALSGLLDSWAEASTAHAARIGDHSYGMH 103
GE L H + A+ GW G+SA AL+ +D W E S A +RIGDH+ G+H
Sbjct 19 QGEDLAAGHLSSDHRIQAAQSGWQGASALALNAAMDDWLEMSRALLSRIGDHARGLH 75
>gi|169628919|ref|YP_001702568.1| hypothetical protein MAB_1831 [Mycobacterium abscessus ATCC 19977]
gi|169240886|emb|CAM61914.1| Hypothetical protein MAB_1831 [Mycobacterium abscessus]
Length=105
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/112 (31%), Positives = 46/112 (42%), Gaps = 20/112 (17%)
Query 29 TLRAIPEVLSQVGYQQADHGESLLTS----------HHCCLGAAEGARPGWVGSSAGALS 78
T PE L + HGES+L + HH + E A GW+G SA AL
Sbjct 4 TFNVRPEDLHR-------HGESILDAVKISRDEHAGHHDQI---EEASSGWIGKSASALV 53
Query 79 GLLDSWAEASTAHAARIGDHSYGMHLAAVGFAEMEEHNAAALAAVYPTGGGS 130
L +W + ++ GM A FA MEE N ++ P GG+
Sbjct 54 DLHKAWVDQRATLHHQLSQVGIGMQEDAKTFAAMEEQNRGSIGKASPANGGA 105
>gi|15791093|ref|NP_280917.1| alanyl-tRNA synthetase [Halobacterium sp. NRC-1]
gi|169236845|ref|YP_001690045.1| alanyl-tRNA synthetase [Halobacterium salinarum R1]
gi|22096204|sp|Q9HN24.1|SYA_HALSA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
ligase; Short=AlaRS
gi|205830064|sp|B0R7I0.1|SYA_HALS3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
ligase; Short=AlaRS
gi|10581694|gb|AAG20397.1| alanyl-tRNA synthetase [Halobacterium sp. NRC-1]
gi|167727911|emb|CAP14699.1| alanine--tRNA ligase [Halobacterium salinarum R1]
Length=929
Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/92 (30%), Positives = 41/92 (45%), Gaps = 4/92 (4%)
Query 7 QCARVPY----SAESLVRVEASWYGRTLRAIPEVLSQVGYQQADHGESLLTSHHCCLGAA 62
Q R+ Y + S+VR E YG TL + Q+ + AD GE + T L +
Sbjct 399 QADRLGYENRDTIRSIVRSEVEKYGETLERGGRRVEQLAEEYADRGEPVPTDELIELYDS 458
Query 63 EGARPGWVGSSAGALSGLLDSWAEASTAHAAR 94
G +PG V A + +D+ + + AAR
Sbjct 459 HGIQPGMVADIAADVGATVDAPDDFYSLVAAR 490
>gi|296393462|ref|YP_003658346.1| hypothetical protein Srot_1042 [Segniliparus rotundus DSM 44985]
gi|296180609|gb|ADG97515.1| helix-turn-helix domain protein [Segniliparus rotundus DSM 44985]
Length=188
Score = 35.4 bits (80), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/101 (31%), Positives = 43/101 (43%), Gaps = 7/101 (6%)
Query 3 VNRPQ--CARVPYSAESLVRVEASWYGRTLRAIPEVLSQVGYQQADHGESLLTSHHCCLG 60
+N PQ R+ A SL EA+ + LR EVL + +D + H
Sbjct 45 LNLPQQTIVRIEQGARSLKFSEATAFASALRVPLEVLQAQDSEASDS----WINEHVAFS 100
Query 61 AAEGARPGWVGSSAGALSGLLDSWAEASTAHAARIGDHSYG 101
A + A V S GA + +W+EAS H IG H +G
Sbjct 101 AFQEAVKDAVASIKGAEEKM-KAWSEASEEHGREIGLHVFG 140
>gi|317505842|ref|ZP_07963686.1| cell division protein [Segniliparus rugosus ATCC BAA-974]
gi|316255857|gb|EFV15083.1| cell division protein [Segniliparus rugosus ATCC BAA-974]
Length=99
Score = 34.7 bits (78), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/85 (29%), Positives = 40/85 (48%), Gaps = 0/85 (0%)
Query 36 VLSQVGYQQADHGESLLTSHHCCLGAAEGARPGWVGSSAGALSGLLDSWAEASTAHAARI 95
+LSQ +H + + G + A+ W G++AG+ + + W EAS A A +
Sbjct 11 ILSQAASSFEEHHQQYNALNAQLQGLVDDAQGQWRGAAAGSFATSANKWHEASAAIAQIL 70
Query 96 GDHSYGMHLAAVGFAEMEEHNAAAL 120
D + + V + +EE AAAL
Sbjct 71 NDIQENLQSSGVDYERVEEEQAAAL 95
Lambda K H
0.316 0.129 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 131443546824
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40