BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0967

Length=119
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15608107|ref|NP_215482.1|  hypothetical protein Rv0967 [Mycoba...   245    1e-63
gi|340625979|ref|YP_004744431.1|  hypothetical protein MCAN_09711...   244    4e-63
gi|308231683|ref|ZP_07413436.2|  hypothetical protein TMAG_00903 ...   237    5e-61
gi|296164641|ref|ZP_06847207.1|  copper-sensing transcriptional r...   204    5e-51
gi|331695159|ref|YP_004331398.1|  hypothetical protein Psed_1302 ...   198    2e-49
gi|183984842|ref|YP_001853133.1|  hypothetical protein MMAR_4874 ...   197    5e-49
gi|118616276|ref|YP_904608.1|  hypothetical protein MUL_0425 [Myc...   196    1e-48
gi|158512709|sp|A0PLB8.2|CSOR_MYCUA  RecName: Full=Copper-sensing...   196    1e-48
gi|183982551|ref|YP_001850842.1|  hypothetical protein MMAR_2538 ...   156    1e-36
gi|339629864|ref|YP_004721507.1|  hypothetical protein TPY_3612 [...  95.1    3e-18
gi|226357636|ref|YP_002787376.1|  hypothetical protein Deide_1p01...  80.5    9e-14
gi|94972023|ref|YP_594063.1|  hypothetical protein Dgeo_2555 [Dei...  80.1    1e-13
gi|335431193|ref|ZP_08558076.1|  hypothetical protein HLPCO_19431...  79.3    2e-13
gi|291294695|ref|YP_003506093.1|  hypothetical protein Mrub_0295 ...  79.0    2e-13
gi|225180846|ref|ZP_03734294.1|  protein of unknown function DUF1...  79.0    2e-13
gi|254519075|ref|ZP_05131131.1|  conserved hypothetical protein [...  77.8    4e-13
gi|293401955|ref|ZP_06646095.1|  copper-sensing transcriptional r...  77.8    5e-13
gi|297584131|ref|YP_003699911.1|  hypothetical protein Bsel_1839 ...  77.8    5e-13
gi|319653760|ref|ZP_08007857.1|  hypothetical protein HMPREF1013_...  77.0    9e-13
gi|52081858|ref|YP_080649.1|  hypothetical protein BL01897 [Bacil...  76.6    1e-12
gi|148379283|ref|YP_001253824.1|  hypothetical protein CBO1303 [C...  76.6    1e-12
gi|228998491|ref|ZP_04158079.1|  hypothetical protein bmyco0003_3...  76.3    1e-12
gi|206977882|ref|ZP_03238770.1|  conserved hypothetical protein [...  75.9    2e-12
gi|168184240|ref|ZP_02618904.1|  conserved hypothetical protein [...  75.9    2e-12
gi|320160671|ref|YP_004173895.1|  hypothetical protein ANT_12610 ...  75.5    2e-12
gi|345021636|ref|ZP_08785249.1|  hypothetical protein OTW25_09929...  75.5    3e-12
gi|152976120|ref|YP_001375637.1|  hypothetical protein Bcer98_240...  75.1    3e-12
gi|23098596|ref|NP_692062.1|  hypothetical protein OB1141 [Oceano...  75.1    3e-12
gi|164687195|ref|ZP_02211223.1|  hypothetical protein CLOBAR_0083...  75.1    3e-12
gi|301055222|ref|YP_003793433.1|  hypothetical protein BACI_c3682...  75.1    3e-12
gi|42782811|ref|NP_980058.1|  hypothetical protein BCE_3761 [Baci...  74.7    4e-12
gi|206968944|ref|ZP_03229899.1|  conserved hypothetical protein [...  74.7    4e-12
gi|288556609|ref|YP_003428544.1|  hypothetical protein BpOF4_1805...  74.7    4e-12
gi|229162664|ref|ZP_04290621.1|  hypothetical protein bcere0009_3...  74.7    4e-12
gi|30263734|ref|NP_846111.1|  hypothetical protein BA_3861 [Bacil...  74.7    4e-12
gi|340356717|ref|ZP_08679359.1|  copper-sensing transcriptional r...  74.7    5e-12
gi|229018916|ref|ZP_04175759.1|  hypothetical protein bcere0030_3...  74.7    5e-12
gi|219850258|ref|YP_002464691.1|  hypothetical protein Cagg_3411 ...  74.7    5e-12
gi|254739704|ref|ZP_05197398.1|  hypothetical protein BantKB_0156...  74.3    6e-12
gi|340358109|ref|ZP_08680705.1|  copper-sensing transcriptional r...  73.9    8e-12
gi|169824098|ref|YP_001691709.1|  hypothetical protein FMG_0401 [...  73.9    8e-12
gi|228994796|ref|ZP_04154594.1|  hypothetical protein bpmyx0001_5...  73.6    8e-12
gi|229086298|ref|ZP_04218476.1|  hypothetical protein bcere0022_2...  73.6    9e-12
gi|293375800|ref|ZP_06622070.1|  conserved hypothetical protein [...  73.6    1e-11
gi|298246205|ref|ZP_06970011.1|  protein of unknown function DUF1...  73.6    1e-11
gi|222097187|ref|YP_002531244.1|  hypothetical protein BCQ_3527 [...  73.2    1e-11
gi|75759839|ref|ZP_00739914.1|  Hypothetical cytosolic protein [B...  73.2    1e-11
gi|228922446|ref|ZP_04085748.1|  hypothetical protein bthur0011_3...  73.2    1e-11
gi|153953431|ref|YP_001394196.1|  hypothetical protein CKL_0795 [...  73.2    1e-11
gi|341591197|gb|EGS34405.1|  hypothetical protein HMPREF9489_1239...  72.8    1e-11


>gi|15608107|ref|NP_215482.1| hypothetical protein Rv0967 [Mycobacterium tuberculosis H37Rv]
 gi|15840393|ref|NP_335430.1| hypothetical protein MT0995 [Mycobacterium tuberculosis CDC1551]
 gi|31792156|ref|NP_854649.1| hypothetical protein Mb0992 [Mycobacterium bovis AF2122/97]
 62 more sequence titles
 Length=119

 Score =  245 bits (626),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 119/119 (100%), Positives = 119/119 (100%), Gaps = 0/119 (0%)

Query  1    MSKELTAKKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHN  60
            MSKELTAKKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHN
Sbjct  1    MSKELTAKKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHN  60

Query  61   HLETCFSTAVLDGHGQAAIEELIDAVKFTPALTGPHARLGGAAVGESATEEPMPDASNM  119
            HLETCFSTAVLDGHGQAAIEELIDAVKFTPALTGPHARLGGAAVGESATEEPMPDASNM
Sbjct  61   HLETCFSTAVLDGHGQAAIEELIDAVKFTPALTGPHARLGGAAVGESATEEPMPDASNM  119


>gi|340625979|ref|YP_004744431.1| hypothetical protein MCAN_09711 [Mycobacterium canettii CIPT 
140010059]
 gi|340004169|emb|CCC43308.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=119

 Score =  244 bits (622),  Expect = 4e-63, Method: Compositional matrix adjust.
 Identities = 118/119 (99%), Positives = 119/119 (100%), Gaps = 0/119 (0%)

Query  1    MSKELTAKKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHN  60
            M+KELTAKKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHN
Sbjct  1    MNKELTAKKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHN  60

Query  61   HLETCFSTAVLDGHGQAAIEELIDAVKFTPALTGPHARLGGAAVGESATEEPMPDASNM  119
            HLETCFSTAVLDGHGQAAIEELIDAVKFTPALTGPHARLGGAAVGESATEEPMPDASNM
Sbjct  61   HLETCFSTAVLDGHGQAAIEELIDAVKFTPALTGPHARLGGAAVGESATEEPMPDASNM  119


>gi|308231683|ref|ZP_07413436.2| hypothetical protein TMAG_00903 [Mycobacterium tuberculosis SUMu001]
 gi|308370113|ref|ZP_07420323.2| hypothetical protein TMBG_01648 [Mycobacterium tuberculosis SUMu002]
 gi|308370549|ref|ZP_07421972.2| hypothetical protein TMCG_04042 [Mycobacterium tuberculosis SUMu003]
 19 more sequence titles
 Length=115

 Score =  237 bits (604),  Expect = 5e-61, Method: Compositional matrix adjust.
 Identities = 114/115 (99%), Positives = 115/115 (100%), Gaps = 0/115 (0%)

Query  5    LTAKKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHNHLET  64
            +TAKKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHNHLET
Sbjct  1    MTAKKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHNHLET  60

Query  65   CFSTAVLDGHGQAAIEELIDAVKFTPALTGPHARLGGAAVGESATEEPMPDASNM  119
            CFSTAVLDGHGQAAIEELIDAVKFTPALTGPHARLGGAAVGESATEEPMPDASNM
Sbjct  61   CFSTAVLDGHGQAAIEELIDAVKFTPALTGPHARLGGAAVGESATEEPMPDASNM  115


>gi|296164641|ref|ZP_06847207.1| copper-sensing transcriptional repressor CsoR [Mycobacterium 
parascrofulaceum ATCC BAA-614]
 gi|295899949|gb|EFG79389.1| copper-sensing transcriptional repressor CsoR [Mycobacterium 
parascrofulaceum ATCC BAA-614]
Length=120

 Score =  204 bits (518),  Expect = 5e-51, Method: Compositional matrix adjust.
 Identities = 99/113 (88%), Positives = 107/113 (95%), Gaps = 1/113 (0%)

Query  1    MSKELTAKKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHN  60
            M ++LT KKRAALNRLKTVRGHLDGI+RM+ESDAYCVDVMKQISAVQSSLERANRVMLHN
Sbjct  1    MGEDLTDKKRAALNRLKTVRGHLDGIIRMVESDAYCVDVMKQISAVQSSLERANRVMLHN  60

Query  61   HLETCFSTAVLDGHGQAAIEELIDAVKFTPALTGPHARLGGAAVGESATE-EP  112
            HLETCFS AV+DG GQAAIEELIDAVKFTPALTGPHA+L GAAVGE+AT+ EP
Sbjct  61   HLETCFSAAVIDGRGQAAIEELIDAVKFTPALTGPHAQLTGAAVGEAATDGEP  113


>gi|331695159|ref|YP_004331398.1| hypothetical protein Psed_1302 [Pseudonocardia dioxanivorans 
CB1190]
 gi|326949848|gb|AEA23545.1| protein of unknown function DUF156 [Pseudonocardia dioxanivorans 
CB1190]
Length=116

 Score =  198 bits (503),  Expect = 2e-49, Method: Compositional matrix adjust.
 Identities = 96/106 (91%), Positives = 100/106 (95%), Gaps = 0/106 (0%)

Query  1    MSKELTAKKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHN  60
            MS+ELTAKKRAALNRLKTVRGHLDGI+RMLESDAYCVDVMKQISAVQSSLERANRVMLHN
Sbjct  1    MSQELTAKKRAALNRLKTVRGHLDGIIRMLESDAYCVDVMKQISAVQSSLERANRVMLHN  60

Query  61   HLETCFSTAVLDGHGQAAIEELIDAVKFTPALTGPHARLGGAAVGE  106
            HLETCFS AVL G GQAAI+ELIDAVKF+PALTGP  RL GAAVGE
Sbjct  61   HLETCFSDAVLGGRGQAAIDELIDAVKFSPALTGPDGRLTGAAVGE  106


>gi|183984842|ref|YP_001853133.1| hypothetical protein MMAR_4874 [Mycobacterium marinum M]
 gi|183178168|gb|ACC43278.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=117

 Score =  197 bits (500),  Expect = 5e-49, Method: Compositional matrix adjust.
 Identities = 95/112 (85%), Positives = 101/112 (91%), Gaps = 0/112 (0%)

Query  1    MSKELTAKKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHN  60
            MS ELT KKRAALNRLKT RGHLDGI+RMLESDAYCVDVMKQ+SAVQSSLERANRVMLHN
Sbjct  1    MSHELTDKKRAALNRLKTARGHLDGIIRMLESDAYCVDVMKQLSAVQSSLERANRVMLHN  60

Query  61   HLETCFSTAVLDGHGQAAIEELIDAVKFTPALTGPHARLGGAAVGESATEEP  112
            HLETCFS AVLDG GQAAI+ELIDAVKFTPALTGP A+LGGA V E   ++P
Sbjct  61   HLETCFSAAVLDGRGQAAIDELIDAVKFTPALTGPQAQLGGAVVCEPPGDQP  112


>gi|118616276|ref|YP_904608.1| hypothetical protein MUL_0425 [Mycobacterium ulcerans Agy99]
 gi|118568386|gb|ABL03137.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=128

 Score =  196 bits (498),  Expect = 1e-48, Method: Compositional matrix adjust.
 Identities = 94/112 (84%), Positives = 101/112 (91%), Gaps = 0/112 (0%)

Query  1    MSKELTAKKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHN  60
            MS ELT KKRAALNRLKT RGHLDGI+RMLESDAYCVDVMKQ+SAVQSSLERANRVMLHN
Sbjct  12   MSHELTDKKRAALNRLKTARGHLDGIIRMLESDAYCVDVMKQLSAVQSSLERANRVMLHN  71

Query  61   HLETCFSTAVLDGHGQAAIEELIDAVKFTPALTGPHARLGGAAVGESATEEP  112
            HLETCFS AVLDG GQAAI+ELIDAVKFTPALTGP A+LGGA V +   ++P
Sbjct  72   HLETCFSAAVLDGRGQAAIDELIDAVKFTPALTGPQAQLGGAVVCKPPGDQP  123


>gi|158512709|sp|A0PLB8.2|CSOR_MYCUA RecName: Full=Copper-sensing transcriptional repressor CsoR; 
AltName: Full=Copper-sensitive operon repressor
Length=117

 Score =  196 bits (497),  Expect = 1e-48, Method: Compositional matrix adjust.
 Identities = 94/112 (84%), Positives = 101/112 (91%), Gaps = 0/112 (0%)

Query  1    MSKELTAKKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHN  60
            MS ELT KKRAALNRLKT RGHLDGI+RMLESDAYCVDVMKQ+SAVQSSLERANRVMLHN
Sbjct  1    MSHELTDKKRAALNRLKTARGHLDGIIRMLESDAYCVDVMKQLSAVQSSLERANRVMLHN  60

Query  61   HLETCFSTAVLDGHGQAAIEELIDAVKFTPALTGPHARLGGAAVGESATEEP  112
            HLETCFS AVLDG GQAAI+ELIDAVKFTPALTGP A+LGGA V +   ++P
Sbjct  61   HLETCFSAAVLDGRGQAAIDELIDAVKFTPALTGPQAQLGGAVVCKPPGDQP  112


>gi|183982551|ref|YP_001850842.1| hypothetical protein MMAR_2538 [Mycobacterium marinum M]
 gi|183175877|gb|ACC40987.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=202

 Score =  156 bits (394),  Expect = 1e-36, Method: Compositional matrix adjust.
 Identities = 78/110 (71%), Positives = 87/110 (80%), Gaps = 0/110 (0%)

Query  4    ELTAKKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHNHLE  63
            EL   KRA LNR KTVRG+L GI+R+ ESDAY V+V KQISAVQSSLERANRVMLHNHLE
Sbjct  87   ELIVNKRAVLNRPKTVRGNLFGIIRVTESDAYFVEVTKQISAVQSSLERANRVMLHNHLE  146

Query  64   TCFSTAVLDGHGQAAIEELIDAVKFTPALTGPHARLGGAAVGESATEEPM  113
             CF  AV  G G+AAI+ELIDAVK TPALTG    LGGAAVGE   ++P+
Sbjct  147  RCFLVAVPGGRGRAAIDELIDAVKLTPALTGQQVELGGAAVGEPVDDDPL  196


>gi|339629864|ref|YP_004721507.1| hypothetical protein TPY_3612 [Sulfobacillus acidophilus TPY]
 gi|339287653|gb|AEJ41764.1| hypothetical protein TPY_3612 [Sulfobacillus acidophilus TPY]
Length=119

 Score = 95.1 bits (235),  Expect = 3e-18, Method: Compositional matrix adjust.
 Identities = 45/87 (52%), Positives = 63/87 (73%), Gaps = 1/87 (1%)

Query  8   KKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHNHLETCFS  67
           K+ AAL RLK   GHL+ + +M++ D YCV++MKQ++AVQ+SLE+  R++L NHL TC S
Sbjct  6   KEDAAL-RLKVAVGHLESVRKMVDQDVYCVNIMKQLAAVQASLEQVQRILLRNHLLTCVS  64

Query  68  TAVLDGHGQAAIEELIDAVKFTPALTG  94
            AV  G G   I+EL+DA+K+ P  TG
Sbjct  65  DAVSQGFGPQIIDELVDAMKYMPFSTG  91


>gi|226357636|ref|YP_002787376.1| hypothetical protein Deide_1p01710 [Deinococcus deserti VCD115]
 gi|226319627|gb|ACO47622.1| Conserved hypothetical protein [Deinococcus deserti VCD115]
Length=107

 Score = 80.5 bits (197),  Expect = 9e-14, Method: Compositional matrix adjust.
 Identities = 44/84 (53%), Positives = 57/84 (68%), Gaps = 2/84 (2%)

Query  7    AKKRAALNRLKTVRGHLDGIVRMLESD-AYCVDVMKQISAVQSSLERANRVMLHNHLETC  65
            ++KRAA  RLK  RGHLD IV MLE D AYCVDV++Q+ AVQ +L  A  V+L  HLE  
Sbjct  25   SRKRAA-RRLKIARGHLDSIVTMLEKDDAYCVDVLRQLKAVQGALSGAGEVVLRGHLEAH  83

Query  66   FSTAVLDGHGQAAIEELIDAVKFT  89
             +TA   G     +EEL++A+K+T
Sbjct  84   VATASTRGDSVEIVEELMEALKYT  107


>gi|94972023|ref|YP_594063.1| hypothetical protein Dgeo_2555 [Deinococcus geothermalis DSM 
11300]
 gi|94554074|gb|ABF43989.1| protein of unknown function DUF156 [Deinococcus geothermalis 
DSM 11300]
Length=112

 Score = 80.1 bits (196),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 44/84 (53%), Positives = 57/84 (68%), Gaps = 2/84 (2%)

Query  7    AKKRAALNRLKTVRGHLDGIVRMLES-DAYCVDVMKQISAVQSSLERANRVMLHNHLETC  65
            A+KRAA  RLK  RGHLD IV ML+  DAYCVDV++Q+ AVQ +L  A  V+L  HLE  
Sbjct  30   ARKRAA-RRLKIARGHLDSIVAMLDKEDAYCVDVLRQLKAVQGALSGAGEVVLRGHLEAH  88

Query  66   FSTAVLDGHGQAAIEELIDAVKFT  89
             +TA   G     +EEL++A+K+T
Sbjct  89   VATASTRGDSVEIVEELMEALKYT  112


>gi|335431193|ref|ZP_08558076.1| hypothetical protein HLPCO_19431 [Haloplasma contractile SSD-17B]
 gi|334886898|gb|EGM25243.1| hypothetical protein HLPCO_19431 [Haloplasma contractile SSD-17B]
Length=87

 Score = 79.3 bits (194),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 35/82 (43%), Positives = 55/82 (68%), Gaps = 0/82 (0%)

Query  5   LTAKKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHNHLET  64
           +T + +  +N LKT +G +DGI++M+E+D YCVD+ KQI AVQS L++AN  +L  H+ +
Sbjct  1   MTHEDKQLINLLKTSKGQIDGILKMIENDRYCVDISKQILAVQSMLKKANLRILEGHINS  60

Query  65  CFSTAVLDGHGQAAIEELIDAV  86
           C   A  +G G   + E+ID +
Sbjct  61  CVKEAFSEGKGDEKVSEVIDIL  82


>gi|291294695|ref|YP_003506093.1| hypothetical protein Mrub_0295 [Meiothermus ruber DSM 1279]
 gi|290469654|gb|ADD27073.1| protein of unknown function DUF156 [Meiothermus ruber DSM 1279]
Length=94

 Score = 79.0 bits (193),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 35/80 (44%), Positives = 58/80 (73%), Gaps = 0/80 (0%)

Query  9   KRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHNHLETCFST  68
           ++ A NRL + +GHL+GI++MLE + YCVDV+KQI AVQ +L++   ++L +HLE   ++
Sbjct  14  RQEARNRLLSAKGHLEGILKMLEGEPYCVDVLKQIKAVQGALDKVGEMVLRSHLEHHVAS  73

Query  69  AVLDGHGQAAIEELIDAVKF  88
           A + G  Q  +EEL++ +K+
Sbjct  74  AAVRGDTQRMVEELMEVLKY  93


>gi|225180846|ref|ZP_03734294.1| protein of unknown function DUF156 [Dethiobacter alkaliphilus 
AHT 1]
 gi|225168327|gb|EEG77130.1| protein of unknown function DUF156 [Dethiobacter alkaliphilus 
AHT 1]
Length=88

 Score = 79.0 bits (193),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 36/81 (45%), Positives = 52/81 (65%), Gaps = 0/81 (0%)

Query  8   KKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHNHLETCFS  67
           KK   + R+KT  GHL  + RM++ D YC DV+ Q+ AV SSLE+ + ++L NHLETC  
Sbjct  5   KKMDTIRRIKTASGHLKAVERMVDEDKYCADVLLQLQAVISSLEKISNIILENHLETCMR  64

Query  68  TAVLDGHGQAAIEELIDAVKF  88
           +A+L G  +  I EL   +K+
Sbjct  65  SAILRGEDEEIIRELKTFMKY  85


>gi|254519075|ref|ZP_05131131.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
 gi|226912824|gb|EEH98025.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
Length=88

 Score = 77.8 bits (190),  Expect = 4e-13, Method: Compositional matrix adjust.
 Identities = 32/79 (41%), Positives = 51/79 (65%), Gaps = 0/79 (0%)

Query  5   LTAKKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHNHLET  64
           +  +++ +L  LKT +G +DGI++M+E D YC+D+  QI A QS L++AN ++L NHL  
Sbjct  1   MNEERKKSLQSLKTAKGQIDGIIKMIEEDRYCIDISNQIFAAQSLLKKANLIILENHLSH  60

Query  65  CFSTAVLDGHGQAAIEELI  83
           C   A + G G   I E++
Sbjct  61  CVKDACISGDGDEKINEIM  79


>gi|293401955|ref|ZP_06646095.1| copper-sensing transcriptional repressor CsoR (Copper-sensitive 
operon repressor) [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304613|gb|EFE45862.1| copper-sensing transcriptional repressor CsoR (Copper-sensitive 
operon repressor) [Erysipelotrichaceae bacterium 5_2_54FAA]
Length=87

 Score = 77.8 bits (190),  Expect = 5e-13, Method: Compositional matrix adjust.
 Identities = 35/82 (43%), Positives = 53/82 (65%), Gaps = 0/82 (0%)

Query  5   LTAKKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHNHLET  64
           +T +++ AL  LKT RG +DGI+RM+E + YC+D+  QI A QS L++AN  +L  HL T
Sbjct  1   MTPERKKALQNLKTARGQIDGIIRMIEDERYCIDISNQIMASQSLLKKANLHILSGHLHT  60

Query  65  CFSTAVLDGHGQAAIEELIDAV  86
           C  TA+  G     ++E+ D +
Sbjct  61  CVKTAIATGDSDEKLQEIEDVL  82


>gi|297584131|ref|YP_003699911.1| hypothetical protein Bsel_1839 [Bacillus selenitireducens MLS10]
 gi|297142588|gb|ADH99345.1| protein of unknown function DUF156 [Bacillus selenitireducens 
MLS10]
Length=91

 Score = 77.8 bits (190),  Expect = 5e-13, Method: Compositional matrix adjust.
 Identities = 35/76 (47%), Positives = 55/76 (73%), Gaps = 0/76 (0%)

Query  8   KKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHNHLETCFS  67
           +K+A + RL+ V G + GI +M+E D YCVD++ QISA+ + L+RA   +L +H + C S
Sbjct  7   EKKALIQRLRRVEGQVRGIQKMIEEDRYCVDILVQISAINAGLKRAGFHILEDHTKGCVS  66

Query  68  TAVLDGHGQAAIEELI  83
           +AV +G G++AIEEL+
Sbjct  67  SAVEEGDGESAIEELM  82


>gi|319653760|ref|ZP_08007857.1| hypothetical protein HMPREF1013_04476 [Bacillus sp. 2_A_57_CT2]
 gi|317394603|gb|EFV75344.1| hypothetical protein HMPREF1013_04476 [Bacillus sp. 2_A_57_CT2]
Length=101

 Score = 77.0 bits (188),  Expect = 9e-13, Method: Compositional matrix adjust.
 Identities = 35/82 (43%), Positives = 52/82 (64%), Gaps = 0/82 (0%)

Query  6   TAKKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHNHLETC  65
           T +K   + RLK + G + GI  M+E+D YCVD++ QISA+ S++      +L NH   C
Sbjct  14  TKEKDKLVTRLKRIEGQVRGIQNMIENDRYCVDILTQISAINSAMNNVGLHLLENHTRHC  73

Query  66  FSTAVLDGHGQAAIEELIDAVK  87
            S A+ DG+G+ AI+EL+D  K
Sbjct  74  VSDAIKDGNGEEAIQELMDVFK  95


>gi|52081858|ref|YP_080649.1| hypothetical protein BL01897 [Bacillus licheniformis ATCC 14580]
 gi|52787245|ref|YP_093074.1| YvgZ [Bacillus licheniformis ATCC 14580]
 gi|319647776|ref|ZP_08001994.1| copper-sensing transcriptional repressor csoR [Bacillus sp. BT1B_CT2]
 gi|52005069|gb|AAU25011.1| conserved hypothetical protein YvgZ [Bacillus licheniformis ATCC 
14580]
 gi|52349747|gb|AAU42381.1| YvgZ [Bacillus licheniformis ATCC 14580]
 gi|317390117|gb|EFV70926.1| copper-sensing transcriptional repressor csoR [Bacillus sp. BT1B_CT2]
Length=100

 Score = 76.6 bits (187),  Expect = 1e-12, Method: Compositional matrix adjust.
 Identities = 34/79 (44%), Positives = 52/79 (66%), Gaps = 0/79 (0%)

Query  9   KRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHNHLETCFST  68
           K    NRLK + G + GI +M+E+D YCVD++ QISAVQ+++++    +L +H   C + 
Sbjct  17  KEQITNRLKRIEGQVRGIQKMIENDRYCVDILVQISAVQAAMQKVAFSLLEDHTHHCVAN  76

Query  69  AVLDGHGQAAIEELIDAVK  87
           A+  G G+ AIEEL+D  K
Sbjct  77  AIKSGEGEEAIEELLDVFK  95


>gi|148379283|ref|YP_001253824.1| hypothetical protein CBO1303 [Clostridium botulinum A str. ATCC 
3502]
 gi|153931522|ref|YP_001383658.1| hypothetical protein CLB_1331 [Clostridium botulinum A str. ATCC 
19397]
 gi|153936265|ref|YP_001387207.1| hypothetical protein CLC_1341 [Clostridium botulinum A str. Hall]
 17 more sequence titles
 Length=88

 Score = 76.6 bits (187),  Expect = 1e-12, Method: Compositional matrix adjust.
 Identities = 32/82 (40%), Positives = 55/82 (68%), Gaps = 0/82 (0%)

Query  5   LTAKKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHNHLET  64
           +  +K+AAL  LKT +G ++GI++M+E   YC+D+  Q++A QS L++AN ++L  HL  
Sbjct  1   MNEEKKAALQALKTSKGQIEGIIKMIEEGRYCIDISNQMTAAQSLLKKANMLILKQHLNH  60

Query  65  CFSTAVLDGHGQAAIEELIDAV  86
           C   A L  +G+  ++E+ID +
Sbjct  61  CVKQAFLHDNGEEKVDEIIDTL  82


>gi|228998491|ref|ZP_04158079.1| hypothetical protein bmyco0003_30520 [Bacillus mycoides Rock3-17]
 gi|229005966|ref|ZP_04163657.1| hypothetical protein bmyco0002_28890 [Bacillus mycoides Rock1-4]
 gi|228755283|gb|EEM04637.1| hypothetical protein bmyco0002_28890 [Bacillus mycoides Rock1-4]
 gi|228761216|gb|EEM10174.1| hypothetical protein bmyco0003_30520 [Bacillus mycoides Rock3-17]
Length=101

 Score = 76.3 bits (186),  Expect = 1e-12, Method: Compositional matrix adjust.
 Identities = 35/85 (42%), Positives = 55/85 (65%), Gaps = 1/85 (1%)

Query  8    KKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHNHLETCFS  67
            +K   +NRLK + G + GI  M+E+D YCVD++ QISA+ +++++    +L NH   C S
Sbjct  17   EKEQIMNRLKRIEGQVRGIQNMIENDRYCVDILVQISAINAAMKKVGMGILKNHTNHCVS  76

Query  68   TAVLDGHGQAAIEELIDAV-KFTPA  91
             A+ DG+G  AIEEL+    +F+ A
Sbjct  77   NAIKDGNGDEAIEELMKVFERFSKA  101


>gi|206977882|ref|ZP_03238770.1| conserved hypothetical protein [Bacillus cereus H3081.97]
 gi|217961155|ref|YP_002339723.1| hypothetical protein BCAH187_A3781 [Bacillus cereus AH187]
 gi|229140375|ref|ZP_04268930.1| hypothetical protein bcere0013_34740 [Bacillus cereus BDRD-ST26]
 gi|206743882|gb|EDZ55301.1| conserved hypothetical protein [Bacillus cereus H3081.97]
 gi|217065769|gb|ACJ80019.1| conserved hypothetical protein [Bacillus cereus AH187]
 gi|228642936|gb|EEK99212.1| hypothetical protein bcere0013_34740 [Bacillus cereus BDRD-ST26]
Length=100

 Score = 75.9 bits (185),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 35/85 (42%), Positives = 56/85 (66%), Gaps = 1/85 (1%)

Query  8   KKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHNHLETCFS  67
           +K   +NRLK + G + GI  M+E+D YCVD++ QISA+ +++++    +L NH   C S
Sbjct  16  EKEQIINRLKRIEGQVRGIQNMIENDRYCVDILVQISAINAAMKKVGMGVLKNHTSHCVS  75

Query  68  TAVLDGHGQAAIEELIDAV-KFTPA  91
           +A+ DG+G  AIEEL+    +F+ A
Sbjct  76  SAIKDGNGDEAIEELMTVFERFSKA  100


>gi|168184240|ref|ZP_02618904.1| conserved hypothetical protein [Clostridium botulinum Bf]
 gi|237794592|ref|YP_002862144.1| hypothetical protein CLJ_B1350 [Clostridium botulinum Ba4 str. 
657]
 gi|182672724|gb|EDT84685.1| conserved hypothetical protein [Clostridium botulinum Bf]
 gi|229260482|gb|ACQ51515.1| conserved hypothetical protein [Clostridium botulinum Ba4 str. 
657]
Length=88

 Score = 75.9 bits (185),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 31/82 (38%), Positives = 55/82 (68%), Gaps = 0/82 (0%)

Query  5   LTAKKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHNHLET  64
           +  +K+AA+  LKT +G ++GI++M+E   YC+D+  Q++A QS L++AN ++L  HL  
Sbjct  1   MNEEKKAAIQALKTSKGQIEGIIKMIEEGRYCIDISNQMTAAQSLLKKANMLILKQHLNH  60

Query  65  CFSTAVLDGHGQAAIEELIDAV  86
           C   A L  +G+  ++E+ID +
Sbjct  61  CVKQAFLHDNGEEKVDEIIDTL  82


>gi|320160671|ref|YP_004173895.1| hypothetical protein ANT_12610 [Anaerolinea thermophila UNI-1]
 gi|319994524|dbj|BAJ63295.1| hypothetical protein ANT_12610 [Anaerolinea thermophila UNI-1]
Length=90

 Score = 75.5 bits (184),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 33/59 (56%), Positives = 45/59 (77%), Gaps = 0/59 (0%)

Query  12  ALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHNHLETCFSTAV  70
           A++RLK V GH+ GI +MLE DAYC+DV++QI AVQSSL + + ++L  HL +C  TAV
Sbjct  7   AIHRLKIVEGHIRGIQKMLEEDAYCIDVIRQIQAVQSSLNKVSTLLLEQHLNSCVITAV  65


>gi|345021636|ref|ZP_08785249.1| hypothetical protein OTW25_09929 [Ornithinibacillus sp. TW25]
Length=100

 Score = 75.5 bits (184),  Expect = 3e-12, Method: Compositional matrix adjust.
 Identities = 33/80 (42%), Positives = 52/80 (65%), Gaps = 0/80 (0%)

Query  8   KKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHNHLETCFS  67
           +K+  +NRLK + G + GI +M+E D YCVD++ QISA+QS+L+     +   H+  C S
Sbjct  17  EKQKVINRLKRIEGQVRGIQKMVEEDRYCVDILVQISAIQSALKNVGFAVTERHINHCVS  76

Query  68  TAVLDGHGQAAIEELIDAVK  87
            A+  G G+  IEEL++ +K
Sbjct  77  DAIRQGEGKETIEELMEVLK  96


>gi|152976120|ref|YP_001375637.1| hypothetical protein Bcer98_2404 [Bacillus cereus subsp. cytotoxis 
NVH 391-98]
 gi|152024872|gb|ABS22642.1| protein of unknown function DUF156 [Bacillus cytotoxicus NVH 
391-98]
Length=101

 Score = 75.1 bits (183),  Expect = 3e-12, Method: Compositional matrix adjust.
 Identities = 35/85 (42%), Positives = 55/85 (65%), Gaps = 1/85 (1%)

Query  8    KKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHNHLETCFS  67
            +K   +NRLK + G + GI  M+E+D YCVD++ QISA+ +++++    +L NH   C S
Sbjct  17   EKEQIINRLKRIEGQVRGIQNMIENDRYCVDILVQISAINAAMKKVGMSILKNHTHHCVS  76

Query  68   TAVLDGHGQAAIEELIDAV-KFTPA  91
             A+ DG+G  AIEEL+    +F+ A
Sbjct  77   HAIQDGNGDEAIEELMRVFERFSKA  101


>gi|23098596|ref|NP_692062.1| hypothetical protein OB1141 [Oceanobacillus iheyensis HTE831]
 gi|22776822|dbj|BAC13097.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length=99

 Score = 75.1 bits (183),  Expect = 3e-12, Method: Compositional matrix adjust.
 Identities = 37/86 (44%), Positives = 55/86 (64%), Gaps = 1/86 (1%)

Query  6   TAKKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHNHLETC  65
            A+K+A  NRLK + G + GI  M+E D YCVD++ QISA+Q++L++    +   H++ C
Sbjct  14  NAEKQAVTNRLKRIEGQVRGIQMMVEEDRYCVDILVQISAIQAALKKVGFEITERHMKHC  73

Query  66  FSTAVLDGHGQAAIEELIDAVK-FTP  90
            S AV  G G  AIEE++  +K FT 
Sbjct  74  VSDAVKSGEGNEAIEEVMSVLKQFTK  99


>gi|164687195|ref|ZP_02211223.1| hypothetical protein CLOBAR_00836 [Clostridium bartlettii DSM 
16795]
 gi|164603619|gb|EDQ97084.1| hypothetical protein CLOBAR_00836 [Clostridium bartlettii DSM 
16795]
Length=97

 Score = 75.1 bits (183),  Expect = 3e-12, Method: Compositional matrix adjust.
 Identities = 41/97 (43%), Positives = 64/97 (66%), Gaps = 7/97 (7%)

Query  1   MSKELTAK--KRAALNR-LKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVM  57
           MS++  AK   +AALNR LK + G + GI +M+E D YCVD++ QISA++S+++    ++
Sbjct  1   MSEKKLAKGNDKAALNRRLKRIEGQVKGIQKMIEDDRYCVDILVQISAIRSAIDNVGTII  60

Query  58  LHNHLETCFSTAVLDG---HGQAAIEELIDAV-KFTP  90
           L NH++ C S  +  G     +AAI+EL+D + KFT 
Sbjct  61  LENHIKGCVSNDLKYGDEEQSEAAIKELMDTIKKFTK  97


>gi|301055222|ref|YP_003793433.1| hypothetical protein BACI_c36820 [Bacillus cereus biovar anthracis 
str. CI]
 gi|300377391|gb|ADK06295.1| conserved hypothetical protein [Bacillus cereus biovar anthracis 
str. CI]
Length=98

 Score = 75.1 bits (183),  Expect = 3e-12, Method: Compositional matrix adjust.
 Identities = 35/86 (41%), Positives = 56/86 (66%), Gaps = 1/86 (1%)

Query  7   AKKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHNHLETCF  66
           ++K   +NRLK + G + GI  M+E+D YCVD++ QISA+ +++++    +L NH   C 
Sbjct  13  SEKEQIINRLKRIEGQVRGIQNMIENDRYCVDILVQISAINAAMKKVGMGVLKNHTSHCV  72

Query  67  STAVLDGHGQAAIEELIDAV-KFTPA  91
           S A+ DG+G  AIEEL+    +F+ A
Sbjct  73  SGAIKDGNGDEAIEELMTVFERFSKA  98


>gi|42782811|ref|NP_980058.1| hypothetical protein BCE_3761 [Bacillus cereus ATCC 10987]
 gi|229071228|ref|ZP_04204452.1| hypothetical protein bcere0025_34020 [Bacillus cereus F65185]
 gi|229080985|ref|ZP_04213498.1| hypothetical protein bcere0023_36260 [Bacillus cereus Rock4-2]
 8 more sequence titles
 Length=100

 Score = 74.7 bits (182),  Expect = 4e-12, Method: Compositional matrix adjust.
 Identities = 35/85 (42%), Positives = 55/85 (65%), Gaps = 1/85 (1%)

Query  8   KKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHNHLETCFS  67
           +K   +NRLK + G + GI  M+E+D YCVD++ QISA+ +++++    +L NH   C S
Sbjct  16  EKEQIINRLKRIEGQVRGIQNMIENDRYCVDILVQISAINAAMKKVGMGVLKNHTSHCVS  75

Query  68  TAVLDGHGQAAIEELIDAV-KFTPA  91
            A+ DG+G  AIEEL+    +F+ A
Sbjct  76  GAIKDGNGDEAIEELMTVFERFSKA  100


>gi|206968944|ref|ZP_03229899.1| conserved hypothetical protein [Bacillus cereus AH1134]
 gi|206735985|gb|EDZ53143.1| conserved hypothetical protein [Bacillus cereus AH1134]
Length=100

 Score = 74.7 bits (182),  Expect = 4e-12, Method: Compositional matrix adjust.
 Identities = 35/85 (42%), Positives = 55/85 (65%), Gaps = 1/85 (1%)

Query  8   KKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHNHLETCFS  67
           +K   +NRLK + G + GI  M+E+D YCVD++ QISA+ +++++    +L NH   C S
Sbjct  16  EKEQIINRLKRIEGQVRGIQNMIENDRYCVDILVQISAINAAMKKVGMGVLKNHTSHCVS  75

Query  68  TAVLDGHGQAAIEELIDAV-KFTPA  91
            A+ DG+G  AIEEL+    +F+ A
Sbjct  76  GAIKDGNGDEAIEELMTVFERFSKA  100


>gi|288556609|ref|YP_003428544.1| hypothetical protein BpOF4_18055 [Bacillus pseudofirmus OF4]
 gi|288547769|gb|ADC51652.1| hypothetical protein BpOF4_18055 [Bacillus pseudofirmus OF4]
Length=92

 Score = 74.7 bits (182),  Expect = 4e-12, Method: Compositional matrix adjust.
 Identities = 33/86 (39%), Positives = 57/86 (67%), Gaps = 0/86 (0%)

Query  2   SKELTAKKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHNH  61
            K +   K+  LNRLK + G + GI  M+E+D YCVDV+ QISA+Q+++ + +  ++ +H
Sbjct  4   KKTVQPNKQQMLNRLKRIEGQVRGIHNMIENDRYCVDVLTQISAIQAAINKVSLGLVEDH  63

Query  62  LETCFSTAVLDGHGQAAIEELIDAVK  87
              C + A+ + +G+ AI+EL+D +K
Sbjct  64  TRHCVANAIKNDNGEKAIDELMDVMK  89


>gi|229162664|ref|ZP_04290621.1| hypothetical protein bcere0009_34340 [Bacillus cereus R309803]
 gi|228620546|gb|EEK77415.1| hypothetical protein bcere0009_34340 [Bacillus cereus R309803]
Length=100

 Score = 74.7 bits (182),  Expect = 4e-12, Method: Compositional matrix adjust.
 Identities = 35/85 (42%), Positives = 55/85 (65%), Gaps = 1/85 (1%)

Query  8   KKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHNHLETCFS  67
           +K   +NRLK + G + GI  M+E+D YCVD++ QISA+ +++++    +L NH   C S
Sbjct  16  EKEQIINRLKRIEGQVRGIQNMIENDRYCVDILVQISAINAAMKKVGMGVLKNHTSHCVS  75

Query  68  TAVLDGHGQAAIEELIDAV-KFTPA  91
            A+ DG+G  AIEEL+    +F+ A
Sbjct  76  GAIKDGNGDEAIEELMTVFERFSKA  100


>gi|30263734|ref|NP_846111.1| hypothetical protein BA_3861 [Bacillus anthracis str. Ames]
 gi|47529150|ref|YP_020499.1| hypothetical protein GBAA_3861 [Bacillus anthracis str. 'Ames 
Ancestor']
 gi|47568224|ref|ZP_00238927.1| uncharacterized BCR [Bacillus cereus G9241]
 73 more sequence titles
 Length=100

 Score = 74.7 bits (182),  Expect = 4e-12, Method: Compositional matrix adjust.
 Identities = 35/85 (42%), Positives = 55/85 (65%), Gaps = 1/85 (1%)

Query  8   KKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHNHLETCFS  67
           +K   +NRLK + G + GI  M+E+D YCVD++ QISA+ +++++    +L NH   C S
Sbjct  16  EKEQIINRLKRIEGQVRGIQNMIENDRYCVDILVQISAINAAMKKVGMGVLKNHTSHCVS  75

Query  68  TAVLDGHGQAAIEELIDAV-KFTPA  91
            A+ DG+G  AIEEL+    +F+ A
Sbjct  76  GAIKDGNGDEAIEELMTVFERFSKA  100


>gi|340356717|ref|ZP_08679359.1| copper-sensing transcriptional repressor CsoR [Sporosarcina newyorkensis 
2681]
 gi|339620644|gb|EGQ25213.1| copper-sensing transcriptional repressor CsoR [Sporosarcina newyorkensis 
2681]
Length=95

 Score = 74.7 bits (182),  Expect = 5e-12, Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 55/85 (65%), Gaps = 0/85 (0%)

Query  3   KELTAKKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHNHL  62
           K +   K+  LNRLK + G + GI +M+E+D YCVD++ QISA+QS++ + +  +L +H 
Sbjct  7   KTVQPNKQQLLNRLKRIEGQVRGIHQMIENDRYCVDILHQISAIQSAMNKVSLALLEDHT  66

Query  63  ETCFSTAVLDGHGQAAIEELIDAVK  87
             C   A+    G+AAI+EL+  +K
Sbjct  67  HHCVVNAIKGQDGEAAIQELMSVMK  91


>gi|229018916|ref|ZP_04175759.1| hypothetical protein bcere0030_34300 [Bacillus cereus AH1273]
 gi|229025161|ref|ZP_04181585.1| hypothetical protein bcere0029_34640 [Bacillus cereus AH1272]
 gi|228736094|gb|EEL86665.1| hypothetical protein bcere0029_34640 [Bacillus cereus AH1272]
 gi|228742359|gb|EEL92516.1| hypothetical protein bcere0030_34300 [Bacillus cereus AH1273]
Length=100

 Score = 74.7 bits (182),  Expect = 5e-12, Method: Compositional matrix adjust.
 Identities = 35/85 (42%), Positives = 55/85 (65%), Gaps = 1/85 (1%)

Query  8   KKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHNHLETCFS  67
           +K   +NRLK + G + GI  M+E+D YCVD++ QISA+ +++++    +L NH   C S
Sbjct  16  EKEQIINRLKRIEGQVRGIQNMIENDRYCVDILVQISAINAAMKKVGMGVLKNHTSHCVS  75

Query  68  TAVLDGHGQAAIEELIDAV-KFTPA  91
            A+ DG+G  AIEEL+    +F+ A
Sbjct  76  GAIKDGNGDEAIEELMTVFERFSKA  100


>gi|219850258|ref|YP_002464691.1| hypothetical protein Cagg_3411 [Chloroflexus aggregans DSM 9485]
 gi|219544517|gb|ACL26255.1| protein of unknown function DUF156 [Chloroflexus aggregans DSM 
9485]
Length=91

 Score = 74.7 bits (182),  Expect = 5e-12, Method: Compositional matrix adjust.
 Identities = 29/63 (47%), Positives = 47/63 (75%), Gaps = 0/63 (0%)

Query  8   KKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHNHLETCFS  67
           +K+  LNRLKT+ GH+ G+ RM+E DAYC+D++ Q  A+Q +L + + ++L NHL +C +
Sbjct  5   RKQQILNRLKTIEGHIRGVQRMVEEDAYCIDLLNQTRAIQQALAKLDAIILANHLHSCVT  64

Query  68  TAV  70
           TA+
Sbjct  65  TAI  67


>gi|254739704|ref|ZP_05197398.1| hypothetical protein BantKB_01567 [Bacillus anthracis str. Kruger 
B]
Length=100

 Score = 74.3 bits (181),  Expect = 6e-12, Method: Compositional matrix adjust.
 Identities = 35/85 (42%), Positives = 54/85 (64%), Gaps = 1/85 (1%)

Query  8   KKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHNHLETCFS  67
           +K   +NRLK + G + GI  M+E+D YCVD++ QISA+ + +++    +L NH   C S
Sbjct  16  EKEQIINRLKRIEGQVRGIQNMIENDRYCVDILVQISAINAEMKKVGMGVLKNHTSHCVS  75

Query  68  TAVLDGHGQAAIEELIDAV-KFTPA  91
            A+ DG+G  AIEEL+    +F+ A
Sbjct  76  GAIKDGNGDEAIEELMTVFERFSKA  100


>gi|340358109|ref|ZP_08680705.1| copper-sensing transcriptional repressor CsoR [Sporosarcina newyorkensis 
2681]
 gi|339615317|gb|EGQ19997.1| copper-sensing transcriptional repressor CsoR [Sporosarcina newyorkensis 
2681]
Length=95

 Score = 73.9 bits (180),  Expect = 8e-12, Method: Compositional matrix adjust.
 Identities = 33/79 (42%), Positives = 54/79 (69%), Gaps = 0/79 (0%)

Query  9   KRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHNHLETCFST  68
           K+  LNRLK V G + G+ +M+E+D YCVD++ QISA+QS++ + +  +L +H   C + 
Sbjct  13  KQQLLNRLKRVEGQVRGVHQMVENDRYCVDILHQISAIQSAMNKVSLALLEDHTHHCVAN  72

Query  69  AVLDGHGQAAIEELIDAVK  87
           A+    G+AAI+EL+  +K
Sbjct  73  AIKGQDGEAAIKELMSVMK  91


>gi|169824098|ref|YP_001691709.1| hypothetical protein FMG_0401 [Finegoldia magna ATCC 29328]
 gi|167830903|dbj|BAG07819.1| conserved hypothetical protein [Finegoldia magna ATCC 29328]
Length=87

 Score = 73.9 bits (180),  Expect = 8e-12, Method: Compositional matrix adjust.
 Identities = 35/82 (43%), Positives = 52/82 (64%), Gaps = 0/82 (0%)

Query  5   LTAKKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHNHLET  64
           +T  K+ AL ++KTVRG LD IV M+E D YCVD+  QI +    L++AN  +L+ HL T
Sbjct  1   MTEHKQKALKKIKTVRGQLDAIVNMIEEDRYCVDISTQILSCIGQLKKANIDILNGHLRT  60

Query  65  CFSTAVLDGHGQAAIEELIDAV  86
           C   A+ + +    IEE+I+ +
Sbjct  61  CVKHAIENDNADEKIEEVINII  82


>gi|228994796|ref|ZP_04154594.1| hypothetical protein bpmyx0001_54590 [Bacillus pseudomycoides 
DSM 12442]
 gi|228764904|gb|EEM13660.1| hypothetical protein bpmyx0001_54590 [Bacillus pseudomycoides 
DSM 12442]
Length=101

 Score = 73.6 bits (179),  Expect = 8e-12, Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 54/85 (64%), Gaps = 1/85 (1%)

Query  8    KKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHNHLETCFS  67
            +K   +NRLK + G + GI  M+E+D YCVD++ QISA+ +++++    +L NH   C S
Sbjct  17   EKEQIMNRLKRIEGQVRGIQNMIENDRYCVDILVQISAINAAMKKVGMGILKNHTNHCVS  76

Query  68   TAVLDGHGQAAIEELIDAV-KFTPA  91
             A+ DG+G  AI EL+    +F+ A
Sbjct  77   NAIKDGNGDEAIGELMKVFERFSKA  101


>gi|229086298|ref|ZP_04218476.1| hypothetical protein bcere0022_28850 [Bacillus cereus Rock3-44]
 gi|228696993|gb|EEL49800.1| hypothetical protein bcere0022_28850 [Bacillus cereus Rock3-44]
Length=103

 Score = 73.6 bits (179),  Expect = 9e-12, Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 55/85 (65%), Gaps = 1/85 (1%)

Query  8    KKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHNHLETCFS  67
            +K   +NRLK + G + GI  M+E+D YCVD++ QISA+ +++++    +L NH   C S
Sbjct  19   EKEQIINRLKRIEGQVRGIQNMIENDRYCVDILVQISAINAAMKKVGMGVLKNHTNHCVS  78

Query  68   TAVLDGHGQAAIEELIDAV-KFTPA  91
             A+ +G+G  AIEEL+    +F+ A
Sbjct  79   GAIKNGNGDEAIEELMTVFERFSKA  103


>gi|293375800|ref|ZP_06622070.1| conserved hypothetical protein [Turicibacter sanguinis PC909]
 gi|325840772|ref|ZP_08167136.1| putative copper-sensing transcriptional repressor CsoR [Turicibacter 
sp. HGF1]
 gi|292645577|gb|EFF63617.1| conserved hypothetical protein [Turicibacter sanguinis PC909]
 gi|325490142|gb|EGC92479.1| putative copper-sensing transcriptional repressor CsoR [Turicibacter 
sp. HGF1]
Length=88

 Score = 73.6 bits (179),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 30/79 (38%), Positives = 52/79 (66%), Gaps = 0/79 (0%)

Query  5   LTAKKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHNHLET  64
           +  +++ AL  LKT +G +DGI++M+E + YC+D+  QI A Q+ L+R+N ++L  HL  
Sbjct  1   MNEERKKALQSLKTAKGQIDGIIKMIEEERYCMDISNQIVAAQALLKRSNLLILKQHLNH  60

Query  65  CFSTAVLDGHGQAAIEELI  83
           C   AV++G     I+E++
Sbjct  61  CVKQAVINGESDEKIDEIM  79


>gi|298246205|ref|ZP_06970011.1| protein of unknown function DUF156 [Ktedonobacter racemifer DSM 
44963]
 gi|297553686|gb|EFH87551.1| protein of unknown function DUF156 [Ktedonobacter racemifer DSM 
44963]
Length=88

 Score = 73.6 bits (179),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 31/79 (40%), Positives = 53/79 (68%), Gaps = 0/79 (0%)

Query  5   LTAKKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHNHLET  64
           + A+K+  L RL  + GH+ GI +M+E D YCVDV++Q  AV+ ++E+  +++L  HLE+
Sbjct  1   MKAEKQDVLKRLNYIEGHIAGIRKMVEEDKYCVDVLRQTHAVRKAIEKLEQLILSGHLES  60

Query  65  CFSTAVLDGHGQAAIEELI  83
           C    + +G  +A I+EL+
Sbjct  61  CVVEGIKEGREEAVIDELL  79


>gi|222097187|ref|YP_002531244.1| hypothetical protein BCQ_3527 [Bacillus cereus Q1]
 gi|229197839|ref|ZP_04324555.1| hypothetical protein bcere0001_33750 [Bacillus cereus m1293]
 gi|221241245|gb|ACM13955.1| conserved hypothetical protein [Bacillus cereus Q1]
 gi|228585557|gb|EEK43659.1| hypothetical protein bcere0001_33750 [Bacillus cereus m1293]
Length=100

 Score = 73.2 bits (178),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 55/85 (65%), Gaps = 1/85 (1%)

Query  8   KKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHNHLETCFS  67
           +K   +NRLK + G + GI  M+E+D YCVD++ QISA+ +++++    +L NH   C S
Sbjct  16  EKEQIINRLKRIEGQVRGIQNMIENDRYCVDILVQISAINAAMKKVGMGVLKNHTSHCVS  75

Query  68  TAVLDGHGQAAIEELIDAV-KFTPA  91
            A+ +G+G  AIEEL+    +F+ A
Sbjct  76  GAIKNGNGDEAIEELMTVFERFSKA  100


>gi|75759839|ref|ZP_00739914.1| Hypothetical cytosolic protein [Bacillus thuringiensis serovar 
israelensis ATCC 35646]
 gi|218898830|ref|YP_002447241.1| hypothetical protein BCG9842_B1470 [Bacillus cereus G9842]
 gi|228902234|ref|ZP_04066394.1| hypothetical protein bthur0014_34120 [Bacillus thuringiensis 
IBL 4222]
 gi|228966654|ref|ZP_04127700.1| hypothetical protein bthur0004_34610 [Bacillus thuringiensis 
serovar sotto str. T04001]
 gi|74492655|gb|EAO55796.1| Hypothetical cytosolic protein [Bacillus thuringiensis serovar 
israelensis ATCC 35646]
 gi|218544119|gb|ACK96513.1| conserved hypothetical protein [Bacillus cereus G9842]
 gi|228793030|gb|EEM40586.1| hypothetical protein bthur0004_34610 [Bacillus thuringiensis 
serovar sotto str. T04001]
 gi|228857349|gb|EEN01849.1| hypothetical protein bthur0014_34120 [Bacillus thuringiensis 
IBL 4222]
Length=100

 Score = 73.2 bits (178),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 55/85 (65%), Gaps = 1/85 (1%)

Query  8   KKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHNHLETCFS  67
           +K   +NRLK + G + GI  M+E+D YCVD++ QISA+ +++++    +L NH   C S
Sbjct  16  EKEQIINRLKRIEGQVRGIQNMIENDRYCVDILVQISAINAAMKKVGMGVLKNHTSHCVS  75

Query  68  TAVLDGHGQAAIEELIDAV-KFTPA  91
            A+ +G+G  AIEEL+    +F+ A
Sbjct  76  GAIKNGNGDEAIEELMTVFERFSKA  100


>gi|228922446|ref|ZP_04085748.1| hypothetical protein bthur0011_34330 [Bacillus thuringiensis 
serovar huazhongensis BGSC 4BD1]
 gi|228837160|gb|EEM82499.1| hypothetical protein bthur0011_34330 [Bacillus thuringiensis 
serovar huazhongensis BGSC 4BD1]
Length=100

 Score = 73.2 bits (178),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 55/85 (65%), Gaps = 1/85 (1%)

Query  8   KKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHNHLETCFS  67
           +K   +NRLK + G + GI  M+E+D YCVD++ QISA+ +++++    +L NH   C S
Sbjct  16  EKEQIINRLKRIEGQVRGIQNMIENDRYCVDILVQISAINAAMKKVGMGVLKNHTSHCVS  75

Query  68  TAVLDGHGQAAIEELIDAV-KFTPA  91
            A+ +G+G  AIEEL+    +F+ A
Sbjct  76  GAIKNGNGDEAIEELMTVFERFSKA  100


>gi|153953431|ref|YP_001394196.1| hypothetical protein CKL_0795 [Clostridium kluyveri DSM 555]
 gi|219854055|ref|YP_002471177.1| hypothetical protein CKR_0712 [Clostridium kluyveri NBRC 12016]
 gi|146346312|gb|EDK32848.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
 gi|219567779|dbj|BAH05763.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length=90

 Score = 73.2 bits (178),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 31/80 (39%), Positives = 51/80 (64%), Gaps = 0/80 (0%)

Query  5   LTAKKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHNHLET  64
           +  +K+ A   LKT +G ++GI++M+E+  YC+D+  QI A Q+ L+RAN ++L  HL  
Sbjct  1   MNEEKKKAFQALKTSKGQIEGIMKMIENGRYCIDISNQIIAAQALLKRANLLILKQHLNH  60

Query  65  CFSTAVLDGHGQAAIEELID  84
           C   A L   G+  +EE++D
Sbjct  61  CVKEAFLQNTGEEKVEEIVD  80


>gi|341591197|gb|EGS34405.1| hypothetical protein HMPREF9489_1239 [Finegoldia magna SY403409CC001050417]
Length=87

 Score = 72.8 bits (177),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 34/82 (42%), Positives = 52/82 (64%), Gaps = 0/82 (0%)

Query  5   LTAKKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHNHLET  64
           +T  K+ AL ++KTVRG LD IV M+E D YCVD+  QI +    L++AN  +L+ H+ T
Sbjct  1   MTEHKQKALKKIKTVRGQLDAIVNMIEEDRYCVDISTQILSCIGQLKKANIDILNGHMRT  60

Query  65  CFSTAVLDGHGQAAIEELIDAV  86
           C   A+ + +    IEE+I+ +
Sbjct  61  CVKHAIENDNADEKIEEVINII  82



Lambda     K      H
   0.316    0.129    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 129033565320




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40