BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0970 Length=210 Score E Sequences producing significant alignments: (Bits) Value gi|15608110|ref|NP_215485.1| integral membrane protein [Mycobact... 419 1e-115 gi|340625982|ref|YP_004744434.1| putative integral membrane prot... 417 5e-115 gi|296164300|ref|ZP_06846886.1| conserved hypothetical protein [... 234 5e-60 gi|183981454|ref|YP_001849745.1| hypothetical protein MMAR_1432 ... 233 1e-59 gi|183982548|ref|YP_001850839.1| hypothetical protein MMAR_2535 ... 225 4e-57 gi|183984845|ref|YP_001853136.1| hypothetical protein MMAR_4877 ... 224 6e-57 gi|296164388|ref|ZP_06846964.1| conserved hypothetical protein [... 196 2e-48 gi|240168055|ref|ZP_04746714.1| putative integral membrane prote... 174 8e-42 gi|15828085|ref|NP_302348.1| integral membrane protein [Mycobact... 169 3e-40 gi|118619888|ref|YP_908220.1| hypothetical protein MUL_4848 [Myc... 129 3e-28 gi|183980298|ref|YP_001848589.1| hypothetical protein MMAR_0266 ... 125 3e-27 gi|41406178|ref|NP_959014.1| hypothetical protein MAP0080c [Myco... 100 2e-19 gi|336459404|gb|EGO38346.1| hypothetical protein MAPs_03440 [Myc... 100 2e-19 gi|118465215|ref|YP_879386.1| hypothetical protein MAV_0088 [Myc... 99.4 3e-19 gi|254773133|ref|ZP_05214649.1| hypothetical protein MaviaA2_004... 97.8 8e-19 gi|342860206|ref|ZP_08716858.1| hypothetical protein MCOL_15045 ... 96.7 2e-18 gi|240171335|ref|ZP_04749994.1| hypothetical protein MkanA1_1863... 92.8 3e-17 gi|296170459|ref|ZP_06852047.1| conserved hypothetical protein [... 87.0 2e-15 gi|40445329|ref|NP_954789.1| integral membrane protein [Gordonia... 75.1 6e-12 gi|134100429|ref|YP_001106090.1| integral membrane protein [Sacc... 59.7 3e-07 gi|262202530|ref|YP_003273738.1| hypothetical protein Gbro_2614 ... 57.8 9e-07 gi|300788380|ref|YP_003768671.1| integral membrane protein [Amyc... 57.0 2e-06 gi|317509503|ref|ZP_07967116.1| hypothetical protein HMPREF9336_... 56.2 3e-06 gi|296392573|ref|YP_003657457.1| hypothetical protein Srot_0137 ... 53.9 1e-05 gi|302526440|ref|ZP_07278782.1| predicted protein [Streptomyces ... 53.5 2e-05 gi|21219383|ref|NP_625162.1| integral membrane protein [Streptom... 51.2 1e-04 gi|255319169|ref|ZP_05360387.1| NADP-specific glutamate dehydrog... 44.7 0.008 gi|239502942|ref|ZP_04662252.1| glutamate dehydrogenase [Acineto... 41.6 0.079 gi|302539578|ref|ZP_07291920.1| putative integral membrane prote... 41.6 0.084 gi|325980906|ref|YP_004293308.1| glutamate dehydrogenase (NADP(+... 40.8 0.13 gi|262368734|ref|ZP_06062063.1| glutamate dehydrogenase/leucine ... 40.4 0.18 gi|222034519|emb|CAP77261.1| hypothetical protein LF82_440 [Esch... 39.7 0.31 gi|312947356|gb|ADR28183.1| hypothetical protein NRG857_13855 [E... 39.3 0.34 gi|256376711|ref|YP_003100371.1| hypothetical protein Amir_2588 ... 38.9 0.52 gi|339484661|ref|YP_004696447.1| Glu/Leu/Phe/Val dehydrogenase [... 38.9 0.52 gi|15669678|ref|NP_248491.1| TRK system potassium uptake protein... 37.7 0.97 gi|30249585|ref|NP_841655.1| glutamate dehydrogenase [Nitrosomon... 37.4 1.2 gi|256811390|ref|YP_003128759.1| cation transporter [Methanocald... 36.2 3.1 gi|261344670|ref|ZP_05972314.1| NADP-specific glutamate dehydrog... 35.4 5.8 gi|255938141|ref|XP_002559841.1| Pc13g14330 [Penicillium chrysog... 35.0 7.6 >gi|15608110|ref|NP_215485.1| integral membrane protein [Mycobacterium tuberculosis H37Rv] gi|15840396|ref|NP_335433.1| hypothetical protein MT0998 [Mycobacterium tuberculosis CDC1551] gi|31792159|ref|NP_854652.1| integral membrane protein [Mycobacterium bovis AF2122/97] 73 more sequence titles Length=210 Score = 419 bits (1078), Expect = 1e-115, Method: Compositional matrix adjust. Identities = 210/210 (100%), Positives = 210/210 (100%), Gaps = 0/210 (0%) Query 1 MIHDLMLRWVVTGLFVLTAAECGLAIIAKRRPWTLIVNHGLHFAMAVAMAVMAWPWGARV 60 MIHDLMLRWVVTGLFVLTAAECGLAIIAKRRPWTLIVNHGLHFAMAVAMAVMAWPWGARV Sbjct 1 MIHDLMLRWVVTGLFVLTAAECGLAIIAKRRPWTLIVNHGLHFAMAVAMAVMAWPWGARV 60 Query 61 PTTGPAVFFLLAAVWFGATAVVAVRGTATRGLYGYHGLMMLATAWMYAAMNPRLLPVRSC 120 PTTGPAVFFLLAAVWFGATAVVAVRGTATRGLYGYHGLMMLATAWMYAAMNPRLLPVRSC Sbjct 61 PTTGPAVFFLLAAVWFGATAVVAVRGTATRGLYGYHGLMMLATAWMYAAMNPRLLPVRSC 120 Query 121 TEYATEPDGSMPAMDMTAMNMPPNSGSPIWFSAVNWIGTVGFAVAAVFWACRFVMERRQE 180 TEYATEPDGSMPAMDMTAMNMPPNSGSPIWFSAVNWIGTVGFAVAAVFWACRFVMERRQE Sbjct 121 TEYATEPDGSMPAMDMTAMNMPPNSGSPIWFSAVNWIGTVGFAVAAVFWACRFVMERRQE 180 Query 181 ATQSRLPGSIGQAMMAAGMAMLFFAMLFPV 210 ATQSRLPGSIGQAMMAAGMAMLFFAMLFPV Sbjct 181 ATQSRLPGSIGQAMMAAGMAMLFFAMLFPV 210 >gi|340625982|ref|YP_004744434.1| putative integral membrane protein [Mycobacterium canettii CIPT 140010059] gi|340004172|emb|CCC43311.1| putative conserved integral membrane protein [Mycobacterium canettii CIPT 140010059] Length=210 Score = 417 bits (1072), Expect = 5e-115, Method: Compositional matrix adjust. Identities = 209/210 (99%), Positives = 209/210 (99%), Gaps = 0/210 (0%) Query 1 MIHDLMLRWVVTGLFVLTAAECGLAIIAKRRPWTLIVNHGLHFAMAVAMAVMAWPWGARV 60 MIHDLMLRWVVTGLFVLTAAECGLAIIAKRRPWTLIVNHGLHFAMAVAMAVMAWPWGARV Sbjct 1 MIHDLMLRWVVTGLFVLTAAECGLAIIAKRRPWTLIVNHGLHFAMAVAMAVMAWPWGARV 60 Query 61 PTTGPAVFFLLAAVWFGATAVVAVRGTATRGLYGYHGLMMLATAWMYAAMNPRLLPVRSC 120 PTTGPAVFFLLAAVWFGATAVVAVRGTATRGLYGYHGLMMLATAWMYAAMNPRLLPV SC Sbjct 61 PTTGPAVFFLLAAVWFGATAVVAVRGTATRGLYGYHGLMMLATAWMYAAMNPRLLPVHSC 120 Query 121 TEYATEPDGSMPAMDMTAMNMPPNSGSPIWFSAVNWIGTVGFAVAAVFWACRFVMERRQE 180 TEYATEPDGSMPAMDMTAMNMPPNSGSPIWFSAVNWIGTVGFAVAAVFWACRFVMERRQE Sbjct 121 TEYATEPDGSMPAMDMTAMNMPPNSGSPIWFSAVNWIGTVGFAVAAVFWACRFVMERRQE 180 Query 181 ATQSRLPGSIGQAMMAAGMAMLFFAMLFPV 210 ATQSRLPGSIGQAMMAAGMAMLFFAMLFPV Sbjct 181 ATQSRLPGSIGQAMMAAGMAMLFFAMLFPV 210 >gi|296164300|ref|ZP_06846886.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900362|gb|EFG79782.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=211 Score = 234 bits (598), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 124/211 (59%), Positives = 148/211 (71%), Gaps = 1/211 (0%) Query 1 MIHDLMLRWVVTGLFVLTAAECGLAIIAKRRPWTLIVNHGLHFAMAVAMAVMAWPWGARV 60 MIHDL+LRWVVT LF LTAAEC LAI K RPWT +V+HGLHF MAVAM +MAWP GA++ Sbjct 1 MIHDLVLRWVVTALFALTAAECVLAIATKHRPWTWVVSHGLHFIMAVAMVMMAWPSGAQL 60 Query 61 PTTGPAVFFLLAAVWFGATAVVAVRGTATRGLYGYHGLMMLATAWMYAAMNPRLLPVRSC 120 P+TGP FFLLAA+ F AVV R TA R YGYH MMLAT WMYA MN R P + Sbjct 61 PSTGPTAFFLLAAMTFVTMAVVVARTTALRIRYGYHASMMLATGWMYAMMNARWYPAPTS 120 Query 121 TEYATEPD-GSMPAMDMTAMNMPPNSGSPIWFSAVNWIGTVGFAVAAVFWACRFVMERRQ 179 T++ +P SMP MDM MP +SGSP WFSAVNW VGFAVAA+FW + ++R+ Sbjct 121 TQHRAQPAMSSMPGMDMAGTAMPASSGSPTWFSAVNWPAAVGFAVAALFWTYWYFVKRQH 180 Query 180 EATQSRLPGSIGQAMMAAGMAMLFFAMLFPV 210 E ++ R G++ QA MA GM +LF A LF + Sbjct 181 EPSRFRSLGNLSQAGMAIGMTILFSATLFRI 211 >gi|183981454|ref|YP_001849745.1| hypothetical protein MMAR_1432 [Mycobacterium marinum M] gi|183174780|gb|ACC39890.1| conserved hypothetical membrane protein [Mycobacterium marinum M] Length=210 Score = 233 bits (595), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 136/210 (65%), Positives = 159/210 (76%), Gaps = 0/210 (0%) Query 1 MIHDLMLRWVVTGLFVLTAAECGLAIIAKRRPWTLIVNHGLHFAMAVAMAVMAWPWGARV 60 MIHDLMLRWVVTGLF L+AAEC AI RRPWTL+V+HGLH MAVAMAVMAWP GA++ Sbjct 1 MIHDLMLRWVVTGLFALSAAECVAAIATTRRPWTLVVHHGLHLVMAVAMAVMAWPRGAQL 60 Query 61 PTTGPAVFFLLAAVWFGATAVVAVRGTATRGLYGYHGLMMLATAWMYAAMNPRLLPVRSC 120 TGPAVFFLLAAVWF A A+VA TA RG+Y YH LMMLA++WMYA M+ LLP+ S Sbjct 61 QPTGPAVFFLLAAVWFVAMAIVASATTAGRGVYVYHALMMLASSWMYAIMSDHLLPLLSS 120 Query 121 TEYATEPDGSMPAMDMTAMNMPPNSGSPIWFSAVNWIGTVGFAVAAVFWACRFVMERRQE 180 T++A S+P MD AMNMP S SPIWFS VNW G VG A AAVFWAC +++ + E Sbjct 121 TQHAPATTTSIPTMDEAAMNMPATSASPIWFSTVNWFGAVGLAAAAVFWACLYLIGQPHE 180 Query 181 ATQSRLPGSIGQAMMAAGMAMLFFAMLFPV 210 T+SR G++GQA MAAGMA+LFFA L + Sbjct 181 GTRSRSLGNLGQATMAAGMAILFFATLLRI 210 >gi|183982548|ref|YP_001850839.1| hypothetical protein MMAR_2535 [Mycobacterium marinum M] gi|183175874|gb|ACC40984.1| conserved hypothetical secreted protein [Mycobacterium marinum M] Length=206 Score = 225 bits (573), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 117/210 (56%), Positives = 146/210 (70%), Gaps = 4/210 (1%) Query 1 MIHDLMLRWVVTGLFVLTAAECGLAIIAKRRPWTLIVNHGLHFAMAVAMAVMAWPWGARV 60 MIH+L+LRW VTGLF +TA EC L II +RRP TL+V+H LHF MAV MA MAWPWG R+ Sbjct 1 MIHNLLLRWFVTGLFAVTAVECVLPIIVQRRPSTLVVSHSLHFLMAVGMAAMAWPWGTRL 60 Query 61 PTTGPAVFFLLAAVWFGATAVVAVRGTATRGLYGYHGLMMLATAWMYAAMNPRLLPVRSC 120 P+ GPAV F+LA +WF AV+A R A R +YGYHGLMMLA AWMY +MN L+ Sbjct 61 PSAGPAVLFMLATLWFATMAVIAARTPAGRVVYGYHGLMMLAMAWMYVSMNIHLV----T 116 Query 121 TEYATEPDGSMPAMDMTAMNMPPNSGSPIWFSAVNWIGTVGFAVAAVFWACRFVMERRQE 180 + PD MP MDM MN + GSP+W S +NW+ + FA AAVFW CR+ +E R Sbjct 117 GGASAMPDNVMPGMDMAGMNGWAHRGSPVWVSTINWLAAITFAAAAVFWTCRYAIELRHA 176 Query 181 ATQSRLPGSIGQAMMAAGMAMLFFAMLFPV 210 + R GS+GQA++AAGM++LFFA LF + Sbjct 177 LARFRSMGSLGQAVIAAGMSILFFAALFEI 206 >gi|183984845|ref|YP_001853136.1| hypothetical protein MMAR_4877 [Mycobacterium marinum M] gi|183178171|gb|ACC43281.1| conserved hypothetical protein [Mycobacterium marinum M] Length=191 Score = 224 bits (571), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 129/210 (62%), Positives = 143/210 (69%), Gaps = 19/210 (9%) Query 1 MIHDLMLRWVVTGLFVLTAAECGLAIIAKRRPWTLIVNHGLHFAMAVAMAVMAWPWGARV 60 MIHDL LRWVVT LF L+AAECGL II RRPWTL++ HGLHFAMAVAMA MAWPWG R+ Sbjct 1 MIHDLTLRWVVTALFALSAAECGLPIITVRRPWTLVLGHGLHFAMAVAMATMAWPWGTRL 60 Query 61 PTTGPAVFFLLAAVWFGATAVVAVRGTATRGLYGYHGLMMLATAWMYAAMNPRLLPVRSC 120 PTTGP FFLLA VWF A+ A TA R YGYH +MMLATAWMYA M Sbjct 61 PTTGPVTFFLLATVWFAVMALRAAPTTAVRVRYGYHAIMMLATAWMYAVM---------- 110 Query 121 TEYATEPDGSMPAMDMTAMNMPPNSGSPIWFSAVNWIGTVGFAVAAVFWACRFVMERRQE 180 SMP MTAMNMP SG+PIWFSA NW+GTVGFA A FW R + +RR+ Sbjct 111 ---------SMPGTAMTAMNMPATSGAPIWFSAANWLGTVGFAGAGAFWILRRLFDRRRG 161 Query 181 ATQSRLPGSIGQAMMAAGMAMLFFAMLFPV 210 A + G QAMMA GMA+LF AMLFP+ Sbjct 162 APRYSWLGDSVQAMMAGGMAVLFLAMLFPI 191 >gi|296164388|ref|ZP_06846964.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900268|gb|EFG79698.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=207 Score = 196 bits (498), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 116/211 (55%), Positives = 142/211 (68%), Gaps = 5/211 (2%) Query 1 MIHDLMLRWVVTGLFVLTAAECGLAIIAKRRPWTLIVNHGLHFAMAVAMAVMAWPWGARV 60 MIHDL+LRWVVTGLF L A EC L I+ RRPWT++V+H LHF MAV MAVMAWPW + Sbjct 1 MIHDLLLRWVVTGLFALGAIECALPILTGRRPWTVVVSHSLHFLMAVGMAVMAWPWSTQS 60 Query 61 PTTGPAVFFLLAAVWFGATAVVAVRGTATRGLYGYHGLMMLATAWMYAAMNPRLLPVRSC 120 P+TGPAVFFLLAA WF A + R +R LY YH +MMLATAWMYA MN +L Sbjct 61 PSTGPAVFFLLAAAWFTAIGITVARSPGSRLLYAYHVVMMLATAWMYADMNGSML----S 116 Query 121 TEYATEPDGSMPAMDMTAMNMPPNSGSPIWFSAVNWIGTVGFAVAAVFWACRFVMERRQE 180 + +P SM M + AMN P N G+P WFS VNW+G V FA+AA FW ++++ R Sbjct 117 GHLSAQPSVSMSGMHVAAMNGPANGGAPPWFSVVNWLGAVIFAIAAAFWTGKYLIIARAH 176 Query 181 ATQSRLP-GSIGQAMMAAGMAMLFFAMLFPV 210 A R G++ QA +AAGMA+LF A LF + Sbjct 177 AIPHRRSMGNLAQAALAAGMAVLFLAALFAI 207 >gi|240168055|ref|ZP_04746714.1| putative integral membrane protein [Mycobacterium kansasii ATCC 12478] Length=212 Score = 174 bits (441), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 96/209 (46%), Positives = 127/209 (61%), Gaps = 2/209 (0%) Query 1 MIHDLMLRWVVTGLFVLTAAECGLAIIAKRRPWTLIVNHGLHFAMAVAMAVMAWPWGARV 60 M+ +L+LRW+VTGLFVL+ A +A I +R W +V++GLH MA+AM VM WPWG Sbjct 1 MVDELLLRWLVTGLFVLSGANYVVAAIGQRGRWVYLVSNGLHLVMAIAMVVMIWPWGIHA 60 Query 61 PTTGPAVFFLLAAVWFGATAVVAVRGTATRGLYGYHGLMMLATAWMYAAMNPRLLPVRSC 120 PTTGPA FFLLAA WF A VV+ + A YH LMMLA WMY MN LLP Sbjct 61 PTTGPAAFFLLAAGWFIALTVVSAKTIAQWTAGSYHALMMLAMTWMYVVMNGHLLPGNPV 120 Query 121 TEYATEPDGSMPAMDMTAMNMPPNSGSPIWFSAVNWIGTVGFAVAAVFWACRFVMERRQE 180 T + SMP M+M+AM MPP S P W ++VNW+ + F +AA+ W + R+ Sbjct 121 TPHPASTAVSMPGMEMSAMPMPPESSQPGWVASVNWLWFLVFTIAAIVWTAVSLAGWRRG 180 Query 181 ATQSR--LPGSIGQAMMAAGMAMLFFAML 207 AT+ + + G+ MA MA++F A+L Sbjct 181 ATECKRDILAQTGRISMALAMAIVFAALL 209 >gi|15828085|ref|NP_302348.1| integral membrane protein [Mycobacterium leprae TN] gi|221230562|ref|YP_002503978.1| putative integral membrane protein [Mycobacterium leprae Br4923] gi|13093639|emb|CAC30952.1| probable integral membrane protein [Mycobacterium leprae] gi|219933669|emb|CAR72094.1| probable integral membrane protein [Mycobacterium leprae Br4923] Length=210 Score = 169 bits (427), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 109/212 (52%), Positives = 131/212 (62%), Gaps = 4/212 (1%) Query 1 MIHDLMLRWVVTGLFVLTAAECGLAIIAKRRPWTLIVNHGLHFAMAVAMAVMAWPWGARV 60 MI DL+LRWVVTGLFVL+AAECG A +A RRPWTL+ ++GLHFAMA+AMAVMAWP GA++ Sbjct 1 MIDDLLLRWVVTGLFVLSAAECGFACLACRRPWTLVPSNGLHFAMAIAMAVMAWPRGAQL 60 Query 61 PTTGPAVFFLLAAVWFGATAVVAVRGTATRGLYGYHGLMMLATAWMYAAMNPRLLPVRSC 120 PTTG VF L WF A V+ R A R Y Y LMMLA WMY M+ L Sbjct 61 PTTGTVVFCGLVGAWFVILATVSSRRIAERAAYAYPALMMLAMVWMYVIMDSHLHD-HWA 119 Query 121 TEYATEPDGSMPAMDMTAMNMPPNSGSPIWFSAVNWIGTVGFAVAAVFWACRFVMERRQE 180 T + T P SM +DMT + P SG P W S +NW+ F +A VFW R R+ Sbjct 120 TGHHTSPHTSMLGVDMTT-TVVPASGIPGWISIINWLWFAFFCIATVFWTYRSFATSRRN 178 Query 181 ATQSRLPG--SIGQAMMAAGMAMLFFAMLFPV 210 A SR GQAMM+ GMA++F +LF V Sbjct 179 AGFSRYCSLHPSGQAMMSTGMAIMFGVLLFHV 210 >gi|118619888|ref|YP_908220.1| hypothetical protein MUL_4848 [Mycobacterium ulcerans Agy99] gi|118571998|gb|ABL06749.1| conserved hypothetical secreted protein [Mycobacterium ulcerans Agy99] Length=247 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 79/194 (41%), Positives = 103/194 (54%), Gaps = 41/194 (21%) Query 1 MIHDLMLRWVVTGLFVLTAAE------------------------------------CGL 24 MI+DL++RW+ TGLFV + + G Sbjct 1 MINDLLIRWLATGLFVFSGVDYALSALSALSALPALPALPALPALSTFSALPASSAFSGA 60 Query 25 AIIAKRRPWTLIVNHGLHFAMAVAMAVMAWPWGARVPTTGPAVFFLLAAVWFGATAVVAV 84 + ++R WT +V++GLH MA+AM VM WP GA +PTTGPAVFFLLAAVWF + A+ Sbjct 61 PTVTQQRAWTSVVSNGLHLVMAIAMVVMLWPVGAALPTTGPAVFFLLAAVWFA--TLTAL 118 Query 85 RGTATRGLYG--YHGLMMLATAWMYAAMNPRLLPVRSCTEYATEPDGSMPAMDMTAMNMP 142 R T L G YH LMMLA AWMY AM+ +LL + + P SMP M M+ +M Sbjct 119 RAKTTTALVGCSYHALMMLAMAWMYVAMSDQLLACPAAHQ-TMAPGTSMPGMHMSGTDMA 177 Query 143 PNSGSPIWFSAVNW 156 + +P W SAVNW Sbjct 178 AGATAPGWVSAVNW 191 >gi|183980298|ref|YP_001848589.1| hypothetical protein MMAR_0266 [Mycobacterium marinum M] gi|183173624|gb|ACC38734.1| conserved hypothetical secreted protein [Mycobacterium marinum M] Length=247 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 78/194 (41%), Positives = 102/194 (53%), Gaps = 41/194 (21%) Query 1 MIHDLMLRWVVTGLFVLTAAE------------------------------------CGL 24 MI+DL++RW+ TGLFV + A+ G Sbjct 1 MINDLLIRWLATGLFVFSGADYALSALSALSALPALPALPALPALSTFSALPASSAFSGA 60 Query 25 AIIAKRRPWTLIVNHGLHFAMAVAMAVMAWPWGARVPTTGPAVFFLLAAVWFGATAVVAV 84 + ++R WT +V++GLH MA+AM VM WP GA +PTTGPAVFFLLAA WF + A+ Sbjct 61 PTVTQQRAWTSVVSNGLHLVMAIAMVVMLWPVGAALPTTGPAVFFLLAAGWFA--TLTAL 118 Query 85 RGTATRGLYG--YHGLMMLATAWMYAAMNPRLLPVRSCTEYATEPDGSMPAMDMTAMNMP 142 R L G YH LMMLA AWMY AM+ +LL + + P SMP M M+ +M Sbjct 119 RAKTITALVGCSYHALMMLAMAWMYVAMSDQLLACPAAHQ-TMAPGTSMPGMHMSGTDMA 177 Query 143 PNSGSPIWFSAVNW 156 + +P W SAVNW Sbjct 178 AGATAPGWVSAVNW 191 >gi|41406178|ref|NP_959014.1| hypothetical protein MAP0080c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41394526|gb|AAS02397.1| hypothetical protein MAP_0080c [Mycobacterium avium subsp. paratuberculosis K-10] Length=211 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 80/210 (39%), Positives = 110/210 (53%), Gaps = 3/210 (1%) Query 1 MIHDLMLRWVVTGLFVLTAAECGLAIIAKRRPWTLIVNHGLHFAMAVAMAVMAWPWGARV 60 MI +L +RW VT LF + A +++R W+ VNH LH AM+ AM +M W G + Sbjct 1 MIGELTVRWAVTALFGASLAAYTYLAVSQRDRWSCAVNHLLHLAMSAAMILMVWRVGLGL 60 Query 61 PTTGPAVFFLLAAVWFGATAVVAVRGTATRGLYGYHGLMMLATAWMYAAMNPRLLPVRSC 120 P P +FFLLA WF AV A + R Y+ MM A AWMYA M+ + Sbjct 61 PAVAPTLFFLLAGAWFVFLAVRASAESRERLKTCYYAAMMAAMAWMYALMSSGTTVAHAH 120 Query 121 TEYATEPDG-SMPAMDMTAMNMPPNSGSPIWFSAVNWIGTVGFAVAAVFWACRFVMERRQ 179 A++ G +MP M + P +G W +A NW+G +GFA AV+W RFV +RR Sbjct 121 GHSASDSVGANMPGMRLPEHPASPGAGGFSWVAAANWLGALGFAALAVYWLYRFVGQRRL 180 Query 180 EATQSRLP--GSIGQAMMAAGMAMLFFAML 207 +RL + QA AAG A++F +L Sbjct 181 ARVPARLARMEPLYQAFTAAGTALMFDTLL 210 >gi|336459404|gb|EGO38346.1| hypothetical protein MAPs_03440 [Mycobacterium avium subsp. paratuberculosis S397] Length=215 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 80/210 (39%), Positives = 110/210 (53%), Gaps = 3/210 (1%) Query 1 MIHDLMLRWVVTGLFVLTAAECGLAIIAKRRPWTLIVNHGLHFAMAVAMAVMAWPWGARV 60 MI +L +RW VT LF + A +++R W+ VNH LH AM+ AM +M W G + Sbjct 5 MIGELTVRWAVTALFGASLAAYTYLAVSQRDRWSCAVNHLLHLAMSAAMILMVWRVGLGL 64 Query 61 PTTGPAVFFLLAAVWFGATAVVAVRGTATRGLYGYHGLMMLATAWMYAAMNPRLLPVRSC 120 P P +FFLLA WF AV A + R Y+ MM A AWMYA M+ + Sbjct 65 PAVAPTLFFLLAGAWFVFLAVRASAESRERLKTCYYAAMMAAMAWMYALMSSGTTVAHAH 124 Query 121 TEYATEPDG-SMPAMDMTAMNMPPNSGSPIWFSAVNWIGTVGFAVAAVFWACRFVMERRQ 179 A++ G +MP M + P +G W +A NW+G +GFA AV+W RFV +RR Sbjct 125 GHSASDSVGANMPGMRLPEHPASPGAGGFSWVAAANWLGALGFAALAVYWLYRFVGQRRL 184 Query 180 EATQSRLP--GSIGQAMMAAGMAMLFFAML 207 +RL + QA AAG A++F +L Sbjct 185 ARVPARLARMEPLYQAFTAAGTALMFDTLL 214 >gi|118465215|ref|YP_879386.1| hypothetical protein MAV_0088 [Mycobacterium avium 104] gi|118166502|gb|ABK67399.1| conserved hypothetical protein [Mycobacterium avium 104] Length=211 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 80/210 (39%), Positives = 110/210 (53%), Gaps = 3/210 (1%) Query 1 MIHDLMLRWVVTGLFVLTAAECGLAIIAKRRPWTLIVNHGLHFAMAVAMAVMAWPWGARV 60 MI +L +RW VT LF + A +++R W+ VNH LH AM+ AM +M W G + Sbjct 1 MIGELTVRWAVTALFGASLAAYAYLAVSQRGRWSCAVNHLLHLAMSAAMILMVWRVGLGL 60 Query 61 PTTGPAVFFLLAAVWFGATAVVAVRGTATRGLYGYHGLMMLATAWMYAAMNPRLLPVRSC 120 P P +FFLLA WF AV A + R Y+ MM A AWMYA M+ + Sbjct 61 PAVAPTLFFLLAGAWFVFLAVRASAESRERLKTCYYAAMMAAMAWMYALMSSGTTGAHAH 120 Query 121 TEYATEPDG-SMPAMDMTAMNMPPNSGSPIWFSAVNWIGTVGFAVAAVFWACRFVMERRQ 179 A++ G +MP M + P +G W +A NW+G +GFA AV+W RFV +RR Sbjct 121 GHSASDSVGANMPGMRLPEHPASPGAGGFSWVAAANWLGALGFAALAVYWLYRFVGQRRL 180 Query 180 EATQSRLP--GSIGQAMMAAGMAMLFFAML 207 +RL + QA AAG A++F +L Sbjct 181 ARVPARLARMEPLYQAFTAAGTALMFDTLL 210 >gi|254773133|ref|ZP_05214649.1| hypothetical protein MaviaA2_00406 [Mycobacterium avium subsp. avium ATCC 25291] Length=215 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 80/210 (39%), Positives = 109/210 (52%), Gaps = 3/210 (1%) Query 1 MIHDLMLRWVVTGLFVLTAAECGLAIIAKRRPWTLIVNHGLHFAMAVAMAVMAWPWGARV 60 MI +L +RW VT LF + A +++R W+ VNH LH AM+ AM +M W G + Sbjct 5 MIGELTVRWAVTALFGASLAAYAYLAVSQRGRWSCAVNHLLHLAMSAAMILMVWRVGLGL 64 Query 61 PTTGPAVFFLLAAVWFGATAVVAVRGTATRGLYGYHGLMMLATAWMYAAMNPRLLPVRSC 120 P P +FFLLA WF AV A + R Y+ MM A AWMYA M+ + Sbjct 65 PAVAPTLFFLLAGAWFVFLAVRASAESRERLKTCYYAAMMAAMAWMYALMSSGTTGAHAH 124 Query 121 TEYATEPDG-SMPAMDMTAMNMPPNSGSPIWFSAVNWIGTVGFAVAAVFWACRFVMERRQ 179 A++ G +MP M + P +G W +A NW+G GFA AV+W RFV +RR Sbjct 125 GHSASDSVGANMPGMRLPEHPASPGAGGFSWVAAANWLGAPGFAALAVYWLYRFVGQRRL 184 Query 180 EATQSRLP--GSIGQAMMAAGMAMLFFAML 207 +RL + QA AAG A++F +L Sbjct 185 ARVPARLARMEPLYQAFTAAGTALMFDTLL 214 >gi|342860206|ref|ZP_08716858.1| hypothetical protein MCOL_15045 [Mycobacterium colombiense CECT 3035] gi|342132584|gb|EGT85813.1| hypothetical protein MCOL_15045 [Mycobacterium colombiense CECT 3035] Length=218 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 75/221 (34%), Positives = 113/221 (52%), Gaps = 17/221 (7%) Query 1 MIHDLM----LRWVVTGLFVLTAAECGLAIIAKRRPWTLIVNHGLHFAMAVAMAVMAWPW 56 M+H L+ LRW VT LF ++ A +A+ WT + H LH M+VAM +M W Sbjct 1 MLHALIGEPALRWAVTALFGVSVAMYAYLAVAQHDRWTARLTHLLHLVMSVAMVLMVWRV 60 Query 57 GARVPTTGPAVFFLLAAVWFGATAVVAVRGTATRGLYGYHGLMMLATAWMYAAMNPRLLP 116 +P GP +FFLLA +W+ AV A + R L + M+ A+ +P Sbjct 61 ELDLPAIGPTLFFLLAGLWWVGVAVWASSASRQR-LKACYYAAMMVAMAWMYALMSGAVP 119 Query 117 VRSCTEYATEPDGS---MPAMDMTAMNMPPNSGSPIWFSAVNWIGTVGFAVAAVFWACRF 173 S +A +P S MP M++ + +MP + W +A NW+G + FA AA++W+ RF Sbjct 120 GASTRLHA-QPHSSAMAMPGMELPSRDMPSATAGFSWVAAANWVGVLAFAAAALYWSYRF 178 Query 174 VMERRQEATQSRLPGS------IGQAMMAAGMAMLFFAMLF 208 V ERR + PG + QA AAG A++F A+++ Sbjct 179 VGERRTKWVPP--PGRLVWWEPLYQASTAAGTALMFDALVW 217 >gi|240171335|ref|ZP_04749994.1| hypothetical protein MkanA1_18631 [Mycobacterium kansasii ATCC 12478] Length=211 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 78/218 (36%), Positives = 101/218 (47%), Gaps = 20/218 (9%) Query 1 MIHDLMLRWVVTGLFVLTAAECGLAIIAKRRPWTLIVNHGLHFAMAVAMAVMAWPWGARV 60 M++D LRW V +F L+ A + WT V+H LH +M+ AM MAW G Sbjct 1 MLNDSALRWAVATIFGLSIAGDLYLFGTRDLRWTRAVDHLLHLSMSAAMIAMAWRIGPAS 60 Query 61 PTTGPAVFFLLAAVWFGATAVVAVRGTATRGLYGYHGLMMLATAWMYAAMNPRLLPVRSC 120 P VFFLLAA WF A R Y+ MM+A AWMY MN L Sbjct 61 HGLMPIVFFLLAAGWFVLVAGGRRCTLGDRIANCYNATMMIAMAWMYTLMNGSL-----A 115 Query 121 TEYATEPD----GSMPAMDMTAMNMP----PNSGSPIWFSAVNWIGTVGFAVAAVFWACR 172 PD GS P + +MP P +G+ W + NWI T+GFA+AA+ W R Sbjct 116 GHSDHSPDHMMAGSAPT-HIAGGSMPAAQTPQTGA--WIATANWIVTLGFAIAAMLWLWR 172 Query 173 FVMERRQEATQSRLP----GSIGQAMMAAGMAMLFFAM 206 + RR + P G + QA AAG A++F M Sbjct 173 YAGARRAGRSAGAGPLTELGLLSQAFAAAGTALMFGVM 210 >gi|296170459|ref|ZP_06852047.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894930|gb|EFG74651.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=211 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 75/212 (36%), Positives = 100/212 (48%), Gaps = 11/212 (5%) Query 4 DLMLRWVVTGLFVLTAAECGLAIIAKRRPWTLIVNHGLHFAMAVAMAVMAWPWGARVPTT 63 D LRWVVT LF ++ A ++A+RR WT +V+ LH AM+ M MAW G +PT Sbjct 3 DNTLRWVVTALFAVSFAAYAYFLVAERRCWTNMVSQVLHLAMSAVMISMAWGVGMTMPTA 62 Query 64 GPAVFFLLAAVWFGATAVVAVRGTATRGLYGYHGLMMLATAWMYAAMNPRLLPVRS---- 119 G + FLL WF A A R L Y+ +M+A LP RS Sbjct 63 GATLGFLLGGAWFVGIAGRAPWAGDGR-LTSYYYAVMMAAMAWMYVAMTDSLPGRSEHPG 121 Query 120 CTEYATEPDGSMPAMDMTAMNMPPNSGSPIWFSAVNWIGTVGFAVAAVFWACRFVMERRQ 179 G+ PA A +M P G+P W SAVNW VGFA A++WA R+ R Sbjct 122 GDAMGMPAHGAAPASPHAAQHMSP--GAPGWVSAVNWTAAVGFAAVAIYWAYRWTARRWT 179 Query 180 EATQSRLPGSI----GQAMMAAGMAMLFFAML 207 +P + Q AAG A++F A++ Sbjct 180 HLMPRAVPLTYAQIAAQTGTAAGTALMFAAIV 211 >gi|40445329|ref|NP_954789.1| integral membrane protein [Gordonia westfalica] gi|40217359|emb|CAE09110.1| putative integral membrane protein [Gordonia westfalica] Length=225 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 73/223 (33%), Positives = 105/223 (48%), Gaps = 20/223 (8%) Query 1 MIHDLMLRWVVTGLFVLTAAECGLAIIAKRRPWTLIVNHGLHFAMAVAMAVMAWPWGARV 60 +I D++LRW+VT LF + A + + A+R L + H L M++AM VMAWP G ++ Sbjct 7 VIDDVLLRWIVTALFAVGAIDSIRTLAARRTELRLSITHCLMLLMSLAMIVMAWPQGNQL 66 Query 61 PTTGPAVFFLLAAVWFGATAVV-AVRGTATRGLYGYHGLMMLATAWMYAAMNPRLLPVRS 119 P + F L V TAVV A+RGT R L+ Y +MM + WMYA M + Sbjct 67 PLLPLQLLFALGTV----TAVVFAMRGTDDRLLHVYTAVMMASMVWMYAVMGWHTATSAA 122 Query 120 CTEYATEPDGSMPAMD-MTAM-NMPPNSGSPIWFSAVNWIGTVGFAVAAVFWACRFVMER 177 GS P D ++ M M S +P+W +V + +GF ++ A R V Sbjct 123 PATATPAHHGSPPGTDALSDMAQMHGASSNPMWMGSVTLLLVLGFLALTIYCAARSVQLP 182 Query 178 RQEA---------TQSRLPGS----IGQAMMAAGMAMLFFAML 207 R A T R P I A+ A G ++F A+L Sbjct 183 RTAAPAPPMSNAVTTLRRPRLRSPWICHALTAGGTGIMFAALL 225 >gi|134100429|ref|YP_001106090.1| integral membrane protein [Saccharopolyspora erythraea NRRL 2338] gi|291007317|ref|ZP_06565290.1| integral membrane protein [Saccharopolyspora erythraea NRRL 2338] gi|133913052|emb|CAM03165.1| integral membrane protein [Saccharopolyspora erythraea NRRL 2338] Length=233 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/116 (39%), Positives = 55/116 (48%), Gaps = 6/116 (5%) Query 1 MIHDLMLRWVVTGLFVLTAAECGLAIIAKRRPWTLIVNHGLHFAMAVAMAVMAWPWGARV 60 MI L+LRWV+T LF TA + A+ V+ H M+ MA MAWPWG + Sbjct 1 MIEALLLRWVLTALFAGTALWSLTRLAARGSGLADRVSSAAHLLMSALMAAMAWPWGMAL 60 Query 61 PTTGPAVFFLLAAVWFGATAVVAVRGTATRG------LYGYHGLMMLATAWMYAAM 110 P T V F LAA+WF A R G + +H LMM A WM A M Sbjct 61 PATPQIVLFGLAALWFAFLAGNRRRTDDHHGHGSPALAHLHHALMMAAMVWMVATM 116 >gi|262202530|ref|YP_003273738.1| hypothetical protein Gbro_2614 [Gordonia bronchialis DSM 43247] gi|262085877|gb|ACY21845.1| hypothetical protein Gbro_2614 [Gordonia bronchialis DSM 43247] Length=173 Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 60/179 (34%), Positives = 78/179 (44%), Gaps = 23/179 (12%) Query 45 MAVAMAVMAWPWGARVPTTGPAVFFLLAAVWFGATAVVAVRGTATRGLYGYHGLMMLATA 104 M VAM VMAWP G R+ P VFF A V AV+A R R Y Y L M + Sbjct 2 MVVAMIVMAWPIGLRLSGVPPLVFFAGATV---VLAVIAARTLMARRFYVYASLTMGSMV 58 Query 105 WMYAAMNPRLLPVRSCTEYATEPDGS--MPAMDMTA--MNMPPNSGSPIWFSAVNWIGTV 160 WMYA M+ L + A P S + A D A +M + SP W S +N + + Sbjct 59 WMYAVMSRHSL----ASSGADGPSASHHLGADDAVAEMASMHGATSSPGWMSPLNLLIVL 114 Query 161 GFAVAAVFWACRFVME-------RRQEATQ-----SRLPGSIGQAMMAAGMAMLFFAML 207 F VA + +FV RR +A R G + MAA M ++F +L Sbjct 115 AFLVATLVCTGKFVAAMWAAPRIRRSQAVSFTRRWQREIGWLCHGCMAAAMGIMFATLL 173 >gi|300788380|ref|YP_003768671.1| integral membrane protein [Amycolatopsis mediterranei U32] gi|299797894|gb|ADJ48269.1| integral membrane protein [Amycolatopsis mediterranei U32] gi|340529975|gb|AEK45180.1| integral membrane protein [Amycolatopsis mediterranei S699] Length=200 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 66/210 (32%), Positives = 85/210 (41%), Gaps = 13/210 (6%) Query 1 MIHDLMLRWVVTGLFVLTAAECGLAIIAKRRPWTLIVNHGLHFAMAVAMAVMAWPWGARV 60 MI LRW++T +FV A C ++ T V LH AM VAM M WP V Sbjct 1 MIEATGLRWILTAVFVAAGAFCAYRCF-RQGTVTSRVGDVLHAAMCVAMVAMVWPATMGV 59 Query 61 PTTGPAVFFLLAAVWFGATAVVAVRGTATRGLY--GYHGLMMLATAWMYAAMNPRLLPVR 118 V F AV AVRG A + GYH +MMLA WM AM R Sbjct 60 AGLPQVVLF---GFAAAWFAVAAVRGGAPESRWHPGYHAVMMLAMVWMAFAMP------R 110 Query 119 SCTEYATEPDGSMPAMDMTAMNMPP-NSGSPIWFSAVNWIGTVGFAVAAVFWACRFVMER 177 + T MP M+ AM +P G P V + F +A + + R + Sbjct 111 AMVGSGTATTMDMPGMEGMAMALPSAGGGVPADVVIVALTLAIAFCLAGIAFLARVIDGA 170 Query 178 RQEATQSRLPGSIGQAMMAAGMAMLFFAML 207 R R G A+M G +++ AML Sbjct 171 RVAPPSVRTAGWGADALMGLGTSVMLLAML 200 >gi|317509503|ref|ZP_07967116.1| hypothetical protein HMPREF9336_03488 [Segniliparus rugosus ATCC BAA-974] gi|316252207|gb|EFV11664.1| hypothetical protein HMPREF9336_03488 [Segniliparus rugosus ATCC BAA-974] Length=236 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 66/240 (28%), Positives = 91/240 (38%), Gaps = 37/240 (15%) Query 1 MIHDLMLRWVVTGLFVLTAAECGLAIIAKRRP--WTLIVNHGLHFAMAVAMAVMAWPWGA 58 MI D LRWV+ LF+ +A C ++ RP W + H + M ++M M P Sbjct 1 MIADPWLRWVLVALFLFSAGYCAWRLV---RPGIWRGKIGHVFNLLMCLSMLAMVEPGTP 57 Query 59 RVPTTGPAVFFLLAAVWFGATAVVAVRGTATRGLYG--------------------YHGL 98 P V F +A WF A+ R +G Y YH Sbjct 58 TAPYPAQIVVFGVATAWFAMLALSPTRRVCGKGPYRSAPFQGVTGFVCASGRAAVWYHAA 117 Query 99 MMLATAWMYAAMNPRLLPVRSCTEYATEPDG----SMPAMDMTAMNM------PPNSGSP 148 MM A WM M L R + A G MP M M M+M P +P Sbjct 118 MMAAMLWMVVVMAGWLADGRP-SAAAPRSGGMAGMDMPGMSMPGMSMDAAAPSPAQHAAP 176 Query 149 IWFSAVNWIGTVGFAVAAVFWACRFVMERRQEATQSRLPGS-IGQAMMAAGMAMLFFAML 207 IW S V+ V F A ++W R+ R+ S + + MA GM ++ AM+ Sbjct 177 IWISVVDVAFGVMFFAATLWWLRRYFELRKNNGRSSLAEAELLCEVAMALGMGVMAVAMV 236 >gi|296392573|ref|YP_003657457.1| hypothetical protein Srot_0137 [Segniliparus rotundus DSM 44985] gi|296179720|gb|ADG96626.1| tetratricopeptide TPR_2 repeat protein [Segniliparus rotundus DSM 44985] Length=226 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 72/229 (32%), Positives = 101/229 (45%), Gaps = 25/229 (10%) Query 1 MIHDLMLRWVVTGLFVLTAAECGLAIIA----KRRPWTLIVNHGLHFAMAVAMAVMAWPW 56 MI D LR + LF +A C ++ + R W V H H M ++M M WP Sbjct 1 MIADPWLRLALAALFGFSAGYCAWRLLRAGAFRPRLWRGCVGHVFHLLMCLSMLAMIWPT 60 Query 57 GARVPTTGPAVFFLLAAVWFGATAV--VAVRGTAT-------RGLYGYHGLMMLATAWMY 107 VP + F +A +WF A A+ + R T RG YH MM A WM Sbjct 61 TPAVPYSAQTAVFAVATLWFAALALGRSSQRAGRTGFACASGRGAAWYHTTMMAAMLWMA 120 Query 108 AAMNPRLLPVRSCTEYATEPDGSMPAMDMTAMNMPPNSG------SPIWFSAVNWIGTVG 161 A M+ +LL A P G M MDM M+M + +P+W SAV+ + Sbjct 121 AVMSGQLLGGAPPASAAPRPGG-MAGMDMPGMSMQAEADGGARHTAPMWMSAVDVLLGFM 179 Query 162 FAVAAVFWACRFVMERRQEATQSRLPGS---IGQAMMAAGMAMLFFAML 207 F AA++W R E R+ +S +P + + MA GM + FAM+ Sbjct 180 FLAAALWWV-RGYFELRRSRGRS-VPAEAEMLCEVAMALGMGAMLFAMV 226 >gi|302526440|ref|ZP_07278782.1| predicted protein [Streptomyces sp. AA4] gi|302435335|gb|EFL07151.1| predicted protein [Streptomyces sp. AA4] Length=202 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 72/212 (34%), Positives = 93/212 (44%), Gaps = 15/212 (7%) Query 1 MIHDLMLRWVVTGLFVLTAAECGLAIIAKRRPWTLIVNHGLHFAMAVAMAVMAWPWG--- 57 MI + LRW++T LF A C L +R W V LH AM V M MAWP Sbjct 1 MITEPGLRWILTVLFAAAGAFC-LYRCVRRTGWNGRVADALHAAMCVGMVTMAWPATMTF 59 Query 58 ARVPTTGPAVFFLLAAVWFGATAVVAVRGTATRGLYG-YHGLMMLATAWMYAAMNPRLLP 116 AR+P V F AA WF AV A G L G +H LMM AWM AM + Sbjct 60 ARIPQV---VLFAAAAGWF---AVSAAWGFGHGRLPGAHHALMMAGMAWMAFAMPSAMAG 113 Query 117 VRSCTEYATEPDGSMPAMDMTAMNMPPNSGSPIWFSAVNWIGTVGFAVAAVFWACRFVME 176 + T A G MDM +M +P V + V F VA + W R + Sbjct 114 M---TMSAAAMGGEHAGMDMGDASMTMTGHAPAQVVVVAAVLAVVFLVAGIAWLARAIDH 170 Query 177 RRQEATQSRLP-GSIGQAMMAAGMAMLFFAML 207 R A R G + + +M+ GM+++ AM+ Sbjct 171 ARTVARPGRREIGLVMEGVMSLGMSVMAVAMI 202 >gi|21219383|ref|NP_625162.1| integral membrane protein [Streptomyces coelicolor A3(2)] gi|289773466|ref|ZP_06532844.1| integral membrane protein [Streptomyces lividans TK24] gi|6689153|emb|CAB65643.1| putative integral membrane protein [Streptomyces coelicolor A3(2)] gi|289703665|gb|EFD71094.1| integral membrane protein [Streptomyces lividans TK24] Length=219 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/115 (39%), Positives = 55/115 (48%), Gaps = 5/115 (4%) Query 1 MIHDLMLRWVVTGLFVLTAAECGLAIIAKRRPWTLIVNHGLHFAMAVAMAVMAWPWGARV 60 MI LRW++T +F A ++ T V H LH AM+V M MAWPWG + Sbjct 1 MIAANGLRWILTLMFAAPALYGLWRLVRPTTGLTGRVGHLLHAAMSVLMIAMAWPWGMDL 60 Query 61 PTTGPAVFFLLAAVWFGATAVV----AVRGTATRGLYGYHGLMMLATAWMYAAMN 111 V F A+WF A ++V R A R + H LMM A AWM AAM Sbjct 61 AVAPQVVLFAAGALWFVAASLVWPGERSRSGAVRAAW-PHALMMGAMAWMVAAMG 114 >gi|255319169|ref|ZP_05360387.1| NADP-specific glutamate dehydrogenase [Acinetobacter radioresistens SK82] gi|262379301|ref|ZP_06072457.1| glutamate dehydrogenase/leucine dehydrogenase [Acinetobacter radioresistens SH164] gi|255303815|gb|EET83014.1| NADP-specific glutamate dehydrogenase [Acinetobacter radioresistens SK82] gi|262298758|gb|EEY86671.1| glutamate dehydrogenase/leucine dehydrogenase [Acinetobacter radioresistens SH164] Length=447 Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust. Identities = 36/148 (25%), Positives = 61/148 (42%), Gaps = 19/148 (12%) Query 5 LMLRWVVTGLFVLTAAECGLAIIAKRRPWTLIVN-----------HGLHFAMAVAMAVMA 53 + L+ V G A++ G + +RPW + + G +A VM Sbjct 282 MELKNVKRGRMSEFASKHGFEYLEGKRPWGIKCDIALPCATQNELDGDDARQLLANGVMC 341 Query 54 WPWGARVPTTGPAVF-FLLAAVWFGATAVVAVRGTATRGLYGYHGLMMLATAWMYAAMNP 112 GA +P+T AV F+ A + + G AT GL + L W + ++ Sbjct 342 VAEGANMPSTLEAVEEFVKAKILYAPGKASNAGGVATSGLEMSQNALRLG--WSFEEVDE 399 Query 113 RLLPV-----RSCTEYATEPDGSMPAMD 135 RL + R+C +Y T+ DG++ +D Sbjct 400 RLHAIMKEIHRNCVKYGTQEDGTVNYVD 427 >gi|239502942|ref|ZP_04662252.1| glutamate dehydrogenase [Acinetobacter baumannii AB900] Length=447 Score = 41.6 bits (96), Expect = 0.079, Method: Compositional matrix adjust. Identities = 36/148 (25%), Positives = 60/148 (41%), Gaps = 19/148 (12%) Query 5 LMLRWVVTGLFVLTAAECGLAIIAKRRPWTLIVN-----------HGLHFAMAVAMAVMA 53 + L+ + G A++ G + PW + V+ G M +A V+ Sbjct 282 MELKNIQRGRISEFASKHGFEYFEGKTPWHIPVDIALPCATQNELTGEDAKMLIANGVIC 341 Query 54 WPWGARVPTTGPAV-FFLLAAVWFGATAVVAVRGTATRGLYGYHGLMMLATAWMYAAMNP 112 GA +P+T AV F+ A + + G AT GL + L W +A ++ Sbjct 342 VAEGANMPSTLEAVEHFIEAKILYAPGKASNAGGVATSGLEMSQNAIRLG--WTHAEVDE 399 Query 113 RLLPV-----RSCTEYATEPDGSMPAMD 135 RL + +C Y T+ DGS+ +D Sbjct 400 RLHAIMKDIHANCVRYGTKEDGSVNYVD 427 >gi|302539578|ref|ZP_07291920.1| putative integral membrane protein [Streptomyces hygroscopicus ATCC 53653] gi|302457196|gb|EFL20289.1| putative integral membrane protein [Streptomyces himastatinicus ATCC 53653] Length=210 Score = 41.6 bits (96), Expect = 0.084, Method: Compositional matrix adjust. Identities = 36/100 (36%), Positives = 41/100 (41%), Gaps = 9/100 (9%) Query 1 MIHDLMLRWVVTGLFVLTAAEC-----GLAIIAKRRPWTLIVNHGLHFAMAVAMAVMAWP 55 MI LRWV+T LFV+ A V H LH MA+AMA WP Sbjct 1 MIAATGLRWVLTLLFVVPALSAMWRTGAPGGAGGGPGAVERVAHLLHAVMALAMAATVWP 60 Query 56 WGARVPTTGPAVFFLLAAVWFGATAVV----AVRGTATRG 91 WG +P F L A WF A+ A R A RG Sbjct 61 WGMTLPAGPQIALFTLGAAWFAGVALARPAPASRTHALRG 100 >gi|325980906|ref|YP_004293308.1| glutamate dehydrogenase (NADP(+)) [Nitrosomonas sp. AL212] gi|325530425|gb|ADZ25146.1| Glutamate dehydrogenase (NADP(+)) [Nitrosomonas sp. AL212] Length=447 Score = 40.8 bits (94), Expect = 0.13, Method: Compositional matrix adjust. Identities = 29/95 (31%), Positives = 44/95 (47%), Gaps = 8/95 (8%) Query 47 VAMAVMAWPWGARVPTTGPAVF-FLLAAVWFGATAVVAVRGTATRGLYGYHGLMMLATAW 105 V V+ GA +P+T AV F+ V + G AT GL M L+ W Sbjct 335 VNNGVICVAEGANMPSTAEAVECFIHNKVLYAPGKASNAGGVATSGLEMSQNAMRLS--W 392 Query 106 MYAAMNPRLLPV-----RSCTEYATEPDGSMPAMD 135 + ++ RL + +SC +Y T+PDGS+ +D Sbjct 393 THEEVDVRLQAIMQAIHKSCLKYGTKPDGSVNYVD 427 >gi|262368734|ref|ZP_06062063.1| glutamate dehydrogenase/leucine dehydrogenase [Acinetobacter johnsonii SH046] gi|262316412|gb|EEY97450.1| glutamate dehydrogenase/leucine dehydrogenase [Acinetobacter johnsonii SH046] Length=447 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 36/144 (25%), Positives = 62/144 (44%), Gaps = 19/144 (13%) Query 5 LMLRWVVTGLFVLTAAECGLAIIAKRRPWTL--------IVNHGLHFAMA---VAMAVMA 53 + L+ V G A++ G + +RPW++ + L A A +A V+ Sbjct 282 MELKNVKRGRISEFASKHGFEYLEGQRPWSIPCDIALPCATQNELDQADAEVLLANGVIC 341 Query 54 WPWGARVPTTGPAVF-FLLAAVWFGATAVVAVRGTATRGLYGYHGLMMLATAWMYAAMNP 112 GA +P+T AV F+ A + + G AT GL + L W + ++ Sbjct 342 VAEGANMPSTLDAVEKFVEAKILYAPGKASNAGGVATSGLEMSQNALRLG--WTFEEVDE 399 Query 113 RLLPV-----RSCTEYATEPDGSM 131 RL + R+C +Y T+ DG++ Sbjct 400 RLHAIMKEIHRNCVKYGTQADGTV 423 >gi|222034519|emb|CAP77261.1| hypothetical protein LF82_440 [Escherichia coli LF82] Length=418 Score = 39.7 bits (91), Expect = 0.31, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 51/120 (43%), Gaps = 20/120 (16%) Query 3 HDLMLRWVVTGLFVLTAAECGL-----AIIAKRRPWTLIVNHGLHFAMAVAMAVMAWPWG 57 HD+ML G VL + C I + P LI+N+G++ G Sbjct 149 HDVMLLTYEEGAEVLQSWGCQDFKRKWVDITQSAPGQLIINYGVN--------------G 194 Query 58 ARVPTTGPAVFFLLAAVWFGATAVVAVRGTATRGLYGYHGLMMLATAWMYAAMNPRLLPV 117 V TT V L ATA V +GT L GY G+ + A ++AA NP+++ V Sbjct 195 KDVVTT-SIVLARLGDFGIKATAYVNHKGTELIKLTGYPGIRKILNAPVFAAKNPKIVDV 253 >gi|312947356|gb|ADR28183.1| hypothetical protein NRG857_13855 [Escherichia coli O83:H1 str. NRG 857C] Length=416 Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 51/120 (43%), Gaps = 20/120 (16%) Query 3 HDLMLRWVVTGLFVLTAAECGL-----AIIAKRRPWTLIVNHGLHFAMAVAMAVMAWPWG 57 HD+ML G VL + C I + P LI+N+G++ G Sbjct 147 HDVMLLTYEEGAEVLQSWGCQDFKRKWVDITQSAPGQLIINYGVN--------------G 192 Query 58 ARVPTTGPAVFFLLAAVWFGATAVVAVRGTATRGLYGYHGLMMLATAWMYAAMNPRLLPV 117 V TT V L ATA V +GT L GY G+ + A ++AA NP+++ V Sbjct 193 KDVVTT-SIVLARLGDFGIKATAYVNHKGTELIKLTGYPGIRKILNAPVFAAKNPKIVDV 251 >gi|256376711|ref|YP_003100371.1| hypothetical protein Amir_2588 [Actinosynnema mirum DSM 43827] gi|255921014|gb|ACU36525.1| tetratricopeptide TPR_2 repeat protein [Actinosynnema mirum DSM 43827] Length=203 Score = 38.9 bits (89), Expect = 0.52, Method: Compositional matrix adjust. Identities = 56/211 (27%), Positives = 81/211 (39%), Gaps = 14/211 (6%) Query 1 MIHDLMLRWVVTGLFVLTAAECGLAIIAKRRPWTLIVNHG--LHFAMAVAMAVMAWPWG- 57 MI +++LR +T + L CG ++ R L+ G LH M M +MAWP Sbjct 1 MIDEIVLRVALTAAYALA---CGFHLVRLWRDGGLVDRVGSVLHALMCAGMVLMAWPATM 57 Query 58 --ARVPTTGPAVFFLLAAVWFGATAVVAVRGTATRGLYGYHGLMMLATAWMYAAMNPRLL 115 A VP T A A G R +H +MM AWM M L Sbjct 58 AFAPVPQTALFAVAAAWFAALAAIGGRACAGHG-RVELAHHAVMMAGMAWMVVVMP---L 113 Query 116 PVRSCTEYATEPDGSMPAMDMTAMNMPPNSGSPIWFSAVNWIGTVGFAVAAVFWACRFVM 175 +R + T ++ +G P +AV V FA+A W R + Sbjct 114 AMREPSSGGGGGAHDHHGGATTTVD--AGAGVPAHVTAVGLALAVLFAIAGTAWLARALD 171 Query 176 ERRQEATQSRLPGSIGQAMMAAGMAMLFFAM 206 R T+ R ++ M+ GMA++ AM Sbjct 172 AGRAPGTRRRAAAPAVESAMSLGMAVMAVAM 202 >gi|339484661|ref|YP_004696447.1| Glu/Leu/Phe/Val dehydrogenase [Nitrosomonas sp. Is79A3] gi|338806806|gb|AEJ03048.1| Glu/Leu/Phe/Val dehydrogenase [Nitrosomonas sp. Is79A3] Length=447 Score = 38.9 bits (89), Expect = 0.52, Method: Compositional matrix adjust. Identities = 28/95 (30%), Positives = 43/95 (46%), Gaps = 8/95 (8%) Query 47 VAMAVMAWPWGARVPTTGPAVF-FLLAAVWFGATAVVAVRGTATRGLYGYHGLMMLATAW 105 V V+ GA +P+T AV F+ V + G AT GL M ++ W Sbjct 335 VKNGVICVAEGANMPSTAEAVECFIHNKVLYAPGKASNAGGVATSGLEMSQNAMRMS--W 392 Query 106 MYAAMNPRLLPV-----RSCTEYATEPDGSMPAMD 135 ++ RL + +SC +Y T+PDGS+ +D Sbjct 393 SREEVDVRLQEIMQAIHKSCLKYGTKPDGSVNYVD 427 >gi|15669678|ref|NP_248491.1| TRK system potassium uptake protein TrkG [Methanocaldococcus jannaschii DSM 2661] gi|38372551|sp|Q58880.1|Y1485_METJA RecName: Full=Uncharacterized cation transporter MJ1485 gi|1592122|gb|AAB99495.1| TRK system potassium uptake protein (trkG) [Methanocaldococcus jannaschii DSM 2661] Length=474 Score = 37.7 bits (86), Expect = 0.97, Method: Compositional matrix adjust. Identities = 38/139 (28%), Positives = 56/139 (41%), Gaps = 20/139 (14%) Query 69 FLLAAVWFGATAVVAVRGTATRGLYGYHGLMMLATAWMYAAMNPRLLPVRSCTEYATEPD 128 FL+ ++F V R T + L +H ++ A AW+ A+ +P+ +Y + D Sbjct 47 FLIPGLFFSIFGFVLKRATKPKNLKLHHTMVASALAWLIASFIGA-IPLYLSIDYFSYVD 105 Query 129 G---SMPAMDMTAMNMPPN-----SGSPIWFSAVNWIGTVGFAVAAVFWACR-------- 172 SM A T M + PN W S WIG VG V + R Sbjct 106 AVYESMSAWTTTGMTLIPNVEVLPKSILFWRSFQQWIGGVGILVLSALVLARSGTVAYLL 165 Query 173 FVMERRQEATQSRLPGSIG 191 + E RQE +P +IG Sbjct 166 YTSEARQERI---MPSAIG 181 >gi|30249585|ref|NP_841655.1| glutamate dehydrogenase [Nitrosomonas europaea ATCC 19718] gi|30138948|emb|CAD85527.1| Glutamate/leucine/phenylalanine/valine dehydrogenase [Nitrosomonas europaea ATCC 19718] Length=447 Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust. Identities = 29/85 (35%), Positives = 38/85 (45%), Gaps = 8/85 (9%) Query 57 GARVPTTGPAVF-FLLAAVWFGATAVVAVRGTATRGLYGYHGLMMLATAWMYAAMNPRLL 115 GA +P T AV F A V F G AT GL M L+ W ++ RL Sbjct 345 GANMPCTAGAVERFHHAKVLFAPGKASNAGGVATSGLEMSQQAMRLS--WTSGEVDMRLQ 402 Query 116 PV-----RSCTEYATEPDGSMPAMD 135 + SCTEY +PDG++ +D Sbjct 403 EIMRAIHHSCTEYGKKPDGTVNYVD 427 >gi|256811390|ref|YP_003128759.1| cation transporter [Methanocaldococcus fervens AG86] gi|256794590|gb|ACV25259.1| cation transporter [Methanocaldococcus fervens AG86] Length=472 Score = 36.2 bits (82), Expect = 3.1, Method: Compositional matrix adjust. Identities = 37/138 (27%), Positives = 55/138 (40%), Gaps = 17/138 (12%) Query 69 FLLAAVWFGATAVVAVRGTATRGLYGYHGLMMLATAWMYAAMNPRLLPVRSCTEYATEPD 128 FL+ V+F + + T + L +H ++ A AW+ A++ +P+ Y + D Sbjct 44 FLIPGVFFTIFGFILKKVTKHQNLKLHHTMIASALAWLIASLIGA-IPLYLSIPYFSYID 102 Query 129 G---SMPAMDMTAMNMPPN-----SGSPIWFSAVNWIGTVGFAVAAVFWACR-------- 172 G SM A T M + PN W S WIG VG V + R Sbjct 103 GVYESMSAWTTTGMTLIPNVEVLPKSVLFWRSFQQWIGGVGILVLSALVLARSGTVAYLL 162 Query 173 FVMERRQEATQSRLPGSI 190 + E RQE G+I Sbjct 163 YASEARQERIMPSAMGTI 180 >gi|261344670|ref|ZP_05972314.1| NADP-specific glutamate dehydrogenase [Providencia rustigianii DSM 4541] gi|282567590|gb|EFB73125.1| NADP-specific glutamate dehydrogenase [Providencia rustigianii DSM 4541] Length=444 Score = 35.4 bits (80), Expect = 5.8, Method: Compositional matrix adjust. Identities = 36/125 (29%), Positives = 48/125 (39%), Gaps = 19/125 (15%) Query 19 AAECGLAIIAKRRPWTLIVNHGLHFAMA-----------VAMAVMAWPWGARVPTTGPAV 67 A E GL +A ++PW + V+ L A + V A GA +PTT PA Sbjct 294 AKEFGLTYLAGKQPWCVPVDIALPCATQNELDVEAAKVLIQNGVKAVAEGANMPTTIPAT 353 Query 68 -FFLLAAVWFGATAVVAVRGTATRGLYGYHGLMMLATAWMYAAMNPRLLPV-----RSCT 121 FL A V F G AT GL L +W ++ RL + C Sbjct 354 DLFLEAGVLFAPGKAANAGGVATSGLEMAQNAARL--SWKAEKVDTRLHHIMLDIHHHCV 411 Query 122 EYATE 126 E+ E Sbjct 412 EFGGE 416 >gi|255938141|ref|XP_002559841.1| Pc13g14330 [Penicillium chrysogenum Wisconsin 54-1255] gi|211584461|emb|CAP92502.1| Pc13g14330 [Penicillium chrysogenum Wisconsin 54-1255] Length=5267 Score = 35.0 bits (79), Expect = 7.6, Method: Composition-based stats. Identities = 14/46 (31%), Positives = 22/46 (48%), Gaps = 0/46 (0%) Query 11 VTGLFVLTAAECGLAIIAKRRPWTLIVNHGLHFAMAVAMAVMAWPW 56 + ++ TA + GLA + RP + I NH H A + + W W Sbjct 2661 IEDIYPCTALQIGLAALTAERPGSYIANHRFHLAQNTDLDRLRWAW 2706 Lambda K H 0.329 0.135 0.455 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 245963417238 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40