BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0979c

Length=64
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|31792168|ref|NP_854661.1|  hypothetical protein Mb1004c [Mycob...   128    3e-28
gi|289568735|ref|ZP_06448962.1|  multidrug resistance membrane ef...  47.4    7e-04


>gi|31792168|ref|NP_854661.1| hypothetical protein Mb1004c [Mycobacterium bovis AF2122/97]
 gi|57116807|ref|NP_215494.2| hypothetical protein Rv0979c [Mycobacterium tuberculosis H37Rv]
 gi|121636905|ref|YP_977128.1| hypothetical protein BCG_1033c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 18 more sequence titles
 
gi|148660759|ref|YP_001282282.1| hypothetical protein MRA_0985A [Mycobacterium tuberculosis H37Ra]
 gi|167966611|ref|ZP_02548888.1| hypothetical protein MtubH3_00474 [Mycobacterium tuberculosis 
H37Ra]
 gi|224989377|ref|YP_002644064.1| hypothetical protein JTY_1005 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|289446559|ref|ZP_06436303.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289568954|ref|ZP_06449181.1| hypothetical protein TBJG_01459 [Mycobacterium tuberculosis T17]
 gi|339631041|ref|YP_004722683.1| hypothetical protein MAF_09880 [Mycobacterium africanum GM041182]
 gi|340625991|ref|YP_004744443.1| hypothetical protein MCAN_09831 [Mycobacterium canettii CIPT 
140010059]
 gi|31617756|emb|CAD93865.1| HYPOTHETICAL PROTEIN Mb1004c [Mycobacterium bovis AF2122/97]
 gi|41353629|emb|CAA17578.2| HYPOTHETICAL PROTEIN Rv0979c [Mycobacterium tuberculosis H37Rv]
 gi|121492552|emb|CAL71020.1| Hypothetical protein BCG_1033c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|148504911|gb|ABQ72720.1| hypothetical protein MRA_0985A [Mycobacterium tuberculosis H37Ra]
 gi|224772490|dbj|BAH25296.1| hypothetical protein JTY_1005 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|289419517|gb|EFD16718.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289542708|gb|EFD46356.1| hypothetical protein TBJG_01459 [Mycobacterium tuberculosis T17]
 gi|339330397|emb|CCC26060.1| hypothetical protein MAF_09880 [Mycobacterium africanum GM041182]
 gi|340004181|emb|CCC43320.1| hypothetical protein MCAN_09831 [Mycobacterium canettii CIPT 
140010059]
 gi|341600921|emb|CCC63592.1| hypothetical protein BCGM_0999c [Mycobacterium bovis BCG str. 
Moreau RDJ]
 gi|344218805|gb|AEM99435.1| hypothetical protein MTCTRI2_1002 [Mycobacterium tuberculosis 
CTRI-2]
Length=64

 Score =  128 bits (322),  Expect = 3e-28, Method: Compositional matrix adjust.
 Identities = 64/64 (100%), Positives = 64/64 (100%), Gaps = 0/64 (0%)

Query  1   MGFRTQVGAATIASTMTWRIPVEDGPAQFRAGVGPGRDRQFTVVAPMVVGLWDRNRRPGW  60
           MGFRTQVGAATIASTMTWRIPVEDGPAQFRAGVGPGRDRQFTVVAPMVVGLWDRNRRPGW
Sbjct  1   MGFRTQVGAATIASTMTWRIPVEDGPAQFRAGVGPGRDRQFTVVAPMVVGLWDRNRRPGW  60

Query  61  QWPS  64
           QWPS
Sbjct  61  QWPS  64


>gi|289568735|ref|ZP_06448962.1| multidrug resistance membrane efflux protein emrB [Mycobacterium 
tuberculosis T17]
 gi|289542489|gb|EFD46137.1| multidrug resistance membrane efflux protein emrB [Mycobacterium 
tuberculosis T17]
Length=354

 Score = 47.4 bits (111),  Expect = 7e-04, Method: Compositional matrix adjust.
 Identities = 22/29 (76%), Positives = 23/29 (80%), Gaps = 0/29 (0%)

Query  36   GRDRQFTVVAPMVVGLWDRNRRPGWQWPS  64
            GRDRQFTVVAPMVVGLWDR   P W+  S
Sbjct  323  GRDRQFTVVAPMVVGLWDRASVPCWRCRS  351



Lambda     K      H
   0.323    0.138    0.480 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 130804070320




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40