BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0990c
Length=218
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608130|ref|NP_215505.1| hypothetical protein Rv0990c [Mycob... 407 8e-112
gi|31792181|ref|NP_854674.1| hypothetical protein Mb1017c [Mycob... 405 2e-111
gi|148822199|ref|YP_001286953.1| hypothetical protein TBFG_11008... 404 4e-111
gi|289573628|ref|ZP_06453855.1| conserved hypothetical protein [... 404 6e-111
gi|289753048|ref|ZP_06512426.1| conserved hypothetical protein [... 403 7e-111
gi|342860584|ref|ZP_08717235.1| hypothetical protein MCOL_16956 ... 299 2e-79
gi|254823442|ref|ZP_05228443.1| hypothetical protein MintA_26166... 291 4e-77
gi|296169796|ref|ZP_06851411.1| SAF domain protein [Mycobacteriu... 290 1e-76
gi|240169343|ref|ZP_04748002.1| hypothetical protein MkanA1_0852... 281 3e-74
gi|118465730|ref|YP_880352.1| hypothetical protein MAV_1099 [Myc... 281 6e-74
gi|183984494|ref|YP_001852785.1| hypothetical protein MMAR_4524 ... 268 5e-70
gi|254773979|ref|ZP_05215495.1| hypothetical protein MaviaA2_047... 261 5e-68
gi|41407019|ref|NP_959855.1| hypothetical protein MAP0921c [Myco... 259 1e-67
gi|118619767|ref|YP_908099.1| hypothetical protein MUL_4696 [Myc... 251 4e-65
gi|108801257|ref|YP_641454.1| hypothetical protein Mmcs_4293 [My... 238 6e-61
gi|169628178|ref|YP_001701827.1| hypothetical protein MAB_1083c ... 223 2e-56
gi|120405786|ref|YP_955615.1| SAF domain-containing protein [Myc... 218 5e-55
gi|126437236|ref|YP_001072927.1| SAF domain-containing protein [... 215 3e-54
gi|118469802|ref|YP_889718.1| hypothetical protein MSMEG_5481 [M... 215 4e-54
gi|333989578|ref|YP_004522192.1| hypothetical protein JDM601_093... 205 3e-51
gi|145222484|ref|YP_001133162.1| SAF domain-containing protein [... 199 2e-49
gi|336461405|gb|EGO40276.1| SAF domain-containing protein [Mycob... 199 3e-49
gi|325676315|ref|ZP_08155994.1| hypothetical protein HMPREF0724_... 155 3e-36
gi|111022595|ref|YP_705567.1| hypothetical protein RHA1_ro05629 ... 147 1e-33
gi|312138618|ref|YP_004005954.1| hypothetical protein REQ_11700 ... 144 1e-32
gi|226365103|ref|YP_002782886.1| hypothetical protein ROP_56940 ... 130 1e-28
gi|229495106|ref|ZP_04388852.1| SAF domain protein [Rhodococcus ... 126 2e-27
gi|226307879|ref|YP_002767839.1| hypothetical protein RER_43920 ... 121 6e-26
gi|317506822|ref|ZP_07964596.1| SAF domain-containing protein [S... 118 6e-25
gi|296393686|ref|YP_003658570.1| SAF domain-containing protein [... 110 1e-22
gi|54026930|ref|YP_121172.1| hypothetical protein nfa49560 [Noca... 110 1e-22
gi|296140955|ref|YP_003648198.1| SAF domain-containing protein [... 100 1e-19
gi|262201376|ref|YP_003272584.1| SAF domain-containing protein [... 100 1e-19
gi|343925208|ref|ZP_08764735.1| hypothetical protein GOALK_038_0... 99.4 3e-19
gi|331694666|ref|YP_004330905.1| SAF domain-containing protein [... 88.6 6e-16
gi|326383759|ref|ZP_08205444.1| SAF domain-containing protein [G... 83.6 2e-14
gi|134097376|ref|YP_001103037.1| hypothetical protein SACE_0770 ... 82.4 4e-14
gi|333921219|ref|YP_004494800.1| hypothetical protein AS9A_3562 ... 82.0 6e-14
gi|296118260|ref|ZP_06836841.1| putative secreted protein [Coryn... 79.7 3e-13
gi|227501477|ref|ZP_03931526.1| SAF domain protein [Corynebacter... 79.0 4e-13
gi|306835635|ref|ZP_07468644.1| conserved hypothetical protein [... 79.0 5e-13
gi|300790122|ref|YP_003770413.1| hypothetical protein AMED_8314 ... 72.8 3e-11
gi|302530357|ref|ZP_07282699.1| predicted protein [Streptomyces ... 71.6 7e-11
gi|119715033|ref|YP_921998.1| SAF domain-containing protein [Noc... 71.6 7e-11
gi|213966094|ref|ZP_03394282.1| SAF domain protein [Corynebacter... 70.5 2e-10
gi|227504186|ref|ZP_03934235.1| SAF domain protein [Corynebacter... 68.9 5e-10
gi|62389769|ref|YP_225171.1| hypothetical protein cg1002 [Coryne... 67.0 2e-09
gi|326333348|ref|ZP_08199595.1| putative Flp pilus assembly prot... 67.0 2e-09
gi|257057235|ref|YP_003135067.1| SAF domain-containing protein [... 66.6 2e-09
gi|145295050|ref|YP_001137871.1| hypothetical protein cgR_0993 [... 66.2 3e-09
>gi|15608130|ref|NP_215505.1| hypothetical protein Rv0990c [Mycobacterium tuberculosis H37Rv]
gi|15840415|ref|NP_335452.1| hypothetical protein MT1019 [Mycobacterium tuberculosis CDC1551]
gi|148660771|ref|YP_001282294.1| hypothetical protein MRA_0997 [Mycobacterium tuberculosis H37Ra]
33 more sequence titles
Length=218
Score = 407 bits (1045), Expect = 8e-112, Method: Compositional matrix adjust.
Identities = 217/218 (99%), Positives = 218/218 (100%), Gaps = 0/218 (0%)
Query 1 VAESSLNPSLVSRISAFLRPDWTRTVRARRFAAAGLVMLAGVAALRSNPEDDRSEVVVAA 60
+AESSLNPSLVSRISAFLRPDWTRTVRARRFAAAGLVMLAGVAALRSNPEDDRSEVVVAA
Sbjct 1 MAESSLNPSLVSRISAFLRPDWTRTVRARRFAAAGLVMLAGVAALRSNPEDDRSEVVVAA 60
Query 61 HDLRPGTALTPGDVRLEKRSATTLPDGSQADLDAVVGSTLASPTRRGEVLTDVRLLGSRL 120
HDLRPGTALTPGDVRLEKRSATTLPDGSQADLDAVVGSTLASPTRRGEVLTDVRLLGSRL
Sbjct 61 HDLRPGTALTPGDVRLEKRSATTLPDGSQADLDAVVGSTLASPTRRGEVLTDVRLLGSRL 120
Query 121 AESTAGPDARIVPLHLADSALVDLVRVGDVVDVLAAPVTDSPAALRLLATDAIVVLVSAQ 180
AESTAGPDARIVPLHLADSALVDLVRVGDVVDVLAAPVTDSPAALRLLATDAIVVLVSAQ
Sbjct 121 AESTAGPDARIVPLHLADSALVDLVRVGDVVDVLAAPVTDSPAALRLLATDAIVVLVSAQ 180
Query 181 QKAQAADSDRVVLVALPARLANTVAGAALGQTVTLTLH 218
QKAQAADSDRVVLVALPARLANTVAGAALGQTVTLTLH
Sbjct 181 QKAQAADSDRVVLVALPARLANTVAGAALGQTVTLTLH 218
>gi|31792181|ref|NP_854674.1| hypothetical protein Mb1017c [Mycobacterium bovis AF2122/97]
gi|121636917|ref|YP_977140.1| hypothetical protein BCG_1045c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224989389|ref|YP_002644076.1| hypothetical protein JTY_1017 [Mycobacterium bovis BCG str. Tokyo
172]
22 more sequence titles
Length=218
Score = 405 bits (1041), Expect = 2e-111, Method: Compositional matrix adjust.
Identities = 216/218 (99%), Positives = 218/218 (100%), Gaps = 0/218 (0%)
Query 1 VAESSLNPSLVSRISAFLRPDWTRTVRARRFAAAGLVMLAGVAALRSNPEDDRSEVVVAA 60
+AESSLNPSLVSRISAFLRPDWTRTVRARRFAAAGLVMLAGVAALRSNPEDDR+EVVVAA
Sbjct 1 MAESSLNPSLVSRISAFLRPDWTRTVRARRFAAAGLVMLAGVAALRSNPEDDRAEVVVAA 60
Query 61 HDLRPGTALTPGDVRLEKRSATTLPDGSQADLDAVVGSTLASPTRRGEVLTDVRLLGSRL 120
HDLRPGTALTPGDVRLEKRSATTLPDGSQADLDAVVGSTLASPTRRGEVLTDVRLLGSRL
Sbjct 61 HDLRPGTALTPGDVRLEKRSATTLPDGSQADLDAVVGSTLASPTRRGEVLTDVRLLGSRL 120
Query 121 AESTAGPDARIVPLHLADSALVDLVRVGDVVDVLAAPVTDSPAALRLLATDAIVVLVSAQ 180
AESTAGPDARIVPLHLADSALVDLVRVGDVVDVLAAPVTDSPAALRLLATDAIVVLVSAQ
Sbjct 121 AESTAGPDARIVPLHLADSALVDLVRVGDVVDVLAAPVTDSPAALRLLATDAIVVLVSAQ 180
Query 181 QKAQAADSDRVVLVALPARLANTVAGAALGQTVTLTLH 218
QKAQAADSDRVVLVALPARLANTVAGAALGQTVTLTLH
Sbjct 181 QKAQAADSDRVVLVALPARLANTVAGAALGQTVTLTLH 218
>gi|148822199|ref|YP_001286953.1| hypothetical protein TBFG_11008 [Mycobacterium tuberculosis F11]
gi|253799982|ref|YP_003032983.1| hypothetical protein TBMG_02999 [Mycobacterium tuberculosis KZN
1435]
gi|254549974|ref|ZP_05140421.1| hypothetical protein Mtube_05853 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
11 more sequence titles
Length=218
Score = 404 bits (1039), Expect = 4e-111, Method: Compositional matrix adjust.
Identities = 216/218 (99%), Positives = 217/218 (99%), Gaps = 0/218 (0%)
Query 1 VAESSLNPSLVSRISAFLRPDWTRTVRARRFAAAGLVMLAGVAALRSNPEDDRSEVVVAA 60
+AESSLNPSLVSRISAFLRPDWTRTVRARRFAAAGLVMLAGVAALRSNPEDDRSEVVVAA
Sbjct 1 MAESSLNPSLVSRISAFLRPDWTRTVRARRFAAAGLVMLAGVAALRSNPEDDRSEVVVAA 60
Query 61 HDLRPGTALTPGDVRLEKRSATTLPDGSQADLDAVVGSTLASPTRRGEVLTDVRLLGSRL 120
DLRPGTALTPGDVRLEKRSATTLPDGSQADLDAVVGSTLASPTRRGEVLTDVRLLGSRL
Sbjct 61 QDLRPGTALTPGDVRLEKRSATTLPDGSQADLDAVVGSTLASPTRRGEVLTDVRLLGSRL 120
Query 121 AESTAGPDARIVPLHLADSALVDLVRVGDVVDVLAAPVTDSPAALRLLATDAIVVLVSAQ 180
AESTAGPDARIVPLHLADSALVDLVRVGDVVDVLAAPVTDSPAALRLLATDAIVVLVSAQ
Sbjct 121 AESTAGPDARIVPLHLADSALVDLVRVGDVVDVLAAPVTDSPAALRLLATDAIVVLVSAQ 180
Query 181 QKAQAADSDRVVLVALPARLANTVAGAALGQTVTLTLH 218
QKAQAADSDRVVLVALPARLANTVAGAALGQTVTLTLH
Sbjct 181 QKAQAADSDRVVLVALPARLANTVAGAALGQTVTLTLH 218
>gi|289573628|ref|ZP_06453855.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
gi|339631053|ref|YP_004722695.1| hypothetical protein MAF_10000 [Mycobacterium africanum GM041182]
gi|289538059|gb|EFD42637.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
gi|339330409|emb|CCC26072.1| hypothetical protein MAF_10000 [Mycobacterium africanum GM041182]
Length=218
Score = 404 bits (1037), Expect = 6e-111, Method: Compositional matrix adjust.
Identities = 215/218 (99%), Positives = 217/218 (99%), Gaps = 0/218 (0%)
Query 1 VAESSLNPSLVSRISAFLRPDWTRTVRARRFAAAGLVMLAGVAALRSNPEDDRSEVVVAA 60
+AESSLNPSLVSRISAFLRPDWTRTVRARRFAAAGLVMLAGVAALRSNPEDDR+EVVVAA
Sbjct 1 MAESSLNPSLVSRISAFLRPDWTRTVRARRFAAAGLVMLAGVAALRSNPEDDRAEVVVAA 60
Query 61 HDLRPGTALTPGDVRLEKRSATTLPDGSQADLDAVVGSTLASPTRRGEVLTDVRLLGSRL 120
HDLRPGT LTPGDVRLEKRSATTLPDGSQADLDAVVGSTLASPTRRGEVLTDVRLLGSRL
Sbjct 61 HDLRPGTVLTPGDVRLEKRSATTLPDGSQADLDAVVGSTLASPTRRGEVLTDVRLLGSRL 120
Query 121 AESTAGPDARIVPLHLADSALVDLVRVGDVVDVLAAPVTDSPAALRLLATDAIVVLVSAQ 180
AESTAGPDARIVPLHLADSALVDLVRVGDVVDVLAAPVTDSPAALRLLATDAIVVLVSAQ
Sbjct 121 AESTAGPDARIVPLHLADSALVDLVRVGDVVDVLAAPVTDSPAALRLLATDAIVVLVSAQ 180
Query 181 QKAQAADSDRVVLVALPARLANTVAGAALGQTVTLTLH 218
QKAQAADSDRVVLVALPARLANTVAGAALGQTVTLTLH
Sbjct 181 QKAQAADSDRVVLVALPARLANTVAGAALGQTVTLTLH 218
>gi|289753048|ref|ZP_06512426.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
gi|289693635|gb|EFD61064.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
Length=218
Score = 403 bits (1036), Expect = 7e-111, Method: Compositional matrix adjust.
Identities = 215/218 (99%), Positives = 218/218 (100%), Gaps = 0/218 (0%)
Query 1 VAESSLNPSLVSRISAFLRPDWTRTVRARRFAAAGLVMLAGVAALRSNPEDDRSEVVVAA 60
+AESSLNPSLVSRISAFLRPDWTRTVRARRFAAAGLV+LAGVAALRSNPEDDR+EVVVAA
Sbjct 1 MAESSLNPSLVSRISAFLRPDWTRTVRARRFAAAGLVILAGVAALRSNPEDDRAEVVVAA 60
Query 61 HDLRPGTALTPGDVRLEKRSATTLPDGSQADLDAVVGSTLASPTRRGEVLTDVRLLGSRL 120
HDLRPGTALTPGDVRLEKRSATTLPDGSQADLDAVVGSTLASPTRRGEVLTDVRLLGSRL
Sbjct 61 HDLRPGTALTPGDVRLEKRSATTLPDGSQADLDAVVGSTLASPTRRGEVLTDVRLLGSRL 120
Query 121 AESTAGPDARIVPLHLADSALVDLVRVGDVVDVLAAPVTDSPAALRLLATDAIVVLVSAQ 180
AESTAGPDARIVPLHLADSALVDLVRVGDVVDVLAAPVTDSPAALRLLATDAIVVLVSAQ
Sbjct 121 AESTAGPDARIVPLHLADSALVDLVRVGDVVDVLAAPVTDSPAALRLLATDAIVVLVSAQ 180
Query 181 QKAQAADSDRVVLVALPARLANTVAGAALGQTVTLTLH 218
QKAQAADSDRVVLVALPARLANTVAGAALGQTVTLTLH
Sbjct 181 QKAQAADSDRVVLVALPARLANTVAGAALGQTVTLTLH 218
>gi|342860584|ref|ZP_08717235.1| hypothetical protein MCOL_16956 [Mycobacterium colombiense CECT
3035]
gi|342132239|gb|EGT85480.1| hypothetical protein MCOL_16956 [Mycobacterium colombiense CECT
3035]
Length=216
Score = 299 bits (766), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 164/216 (76%), Positives = 183/216 (85%), Gaps = 8/216 (3%)
Query 11 VSRISAFLRPDWTRTVRARRFAAAGLVMLAGVAALRSNPEDDRSEVVVAAHDLRPGTALT 70
+SR+S +LRPDWTRTV ARR AA GLVMLAG+A LRSNP+ D ++VVVA HDLRPG ALT
Sbjct 1 MSRLSLWLRPDWTRTVLARRVAAGGLVMLAGIATLRSNPDGDYAQVVVAEHDLRPGAALT 60
Query 71 PGDVRLEKRSATTLPDGSQADLDAVVGSTLASPTRRGEVLTDVRLLGSRLAE----STAG 126
P DVRLEKR A T+PDG++ DL AVVGST A PTRRGEVLTDVRLLGSRLAE S AG
Sbjct 61 PADVRLEKRLAATIPDGARTDLAAVVGSTPAGPTRRGEVLTDVRLLGSRLAEAAIGSKAG 120
Query 127 PDARIVPLHLADSALVDLVRVGDVVDVLAAPVTDSP----AALRLLATDAIVVLVSAQQK 182
P ARIVPLHLAD AL+DLVRVGDVVDVLA P T +P A ++LATDA+VVLVSA++K
Sbjct 121 PGARIVPLHLADGALIDLVRVGDVVDVLATPATSAPDNAHTAPKVLATDAVVVLVSAKEK 180
Query 183 AQAADSDRVVLVALPARLANTVAGAALGQTVTLTLH 218
QAADSDRVVLVALPAR+ANTVAG+ALGQTVTLTLH
Sbjct 181 IQAADSDRVVLVALPARVANTVAGSALGQTVTLTLH 216
>gi|254823442|ref|ZP_05228443.1| hypothetical protein MintA_26166 [Mycobacterium intracellulare
ATCC 13950]
Length=216
Score = 291 bits (745), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 159/216 (74%), Positives = 184/216 (86%), Gaps = 8/216 (3%)
Query 11 VSRISAFLRPDWTRTVRARRFAAAGLVMLAGVAALRSNPEDDRSEVVVAAHDLRPGTALT 70
+SR+S +LRPDWTRTV ARR AA GLV+LAG+A LRSNP D ++VVVA HDLRPG ALT
Sbjct 1 MSRLSLWLRPDWTRTVLARRVAAGGLVVLAGIATLRSNPAGDYTQVVVADHDLRPGNALT 60
Query 71 PGDVRLEKRSATTLPDGSQADLDAVVGSTLASPTRRGEVLTDVRLLGSRLAE----STAG 126
DVR+EKR A+T+PDG++AD+ AVVGSTLA P RRGEVLTDVRLLG+RLAE S AG
Sbjct 61 AADVRIEKRLASTVPDGARADVGAVVGSTLAGPARRGEVLTDVRLLGNRLAEAAIGSKAG 120
Query 127 PDARIVPLHLADSALVDLVRVGDVVDVLAAPVTDSP----AALRLLATDAIVVLVSAQQK 182
P ARIVPLHLAD AL+DLVR GDVVDVLAAP T +P AA R++ATDA+VVLVSA++K
Sbjct 121 PGARIVPLHLADGALIDLVRAGDVVDVLAAPATGTPETAHAAPRVVATDAVVVLVSAKEK 180
Query 183 AQAADSDRVVLVALPARLANTVAGAALGQTVTLTLH 218
Q+AD+DRVVLVALPAR+ANTVAG+ALGQTVTLTLH
Sbjct 181 LQSADADRVVLVALPARVANTVAGSALGQTVTLTLH 216
>gi|296169796|ref|ZP_06851411.1| SAF domain protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295895590|gb|EFG75289.1| SAF domain protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=225
Score = 290 bits (741), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 164/226 (73%), Positives = 185/226 (82%), Gaps = 9/226 (3%)
Query 1 VAESSLNPSLVSRISAFLRPDWTRTVRARRFAAAGLVMLAGVAALRSNPEDDRSEVVVAA 60
+ ESSLNPSL SR+ LRPDWTRTV ARR AA GLV+LAG+AALR+NP D ++VVVA
Sbjct 1 MGESSLNPSLFSRLM-MLRPDWTRTVLARRVAAGGLVVLAGLAALRANPAGDYADVVVAD 59
Query 61 HDLRPGTALTPGDVRLEKRSATTLPDGSQADLDAVVGSTLASPTRRGEVLTDVRLLGSRL 120
HDLRPG ALTP DVRLEKR ATTLPDG+ AD+ AV STL P RRGEVLTDVRLLGSRL
Sbjct 60 HDLRPGAALTPADVRLEKRLATTLPDGALADVSAVANSTLTGPARRGEVLTDVRLLGSRL 119
Query 121 AES----TAGPDARIVPLHLADSALVDLVRVGDVVDVLAAPVTDSP----AALRLLATDA 172
A++ AGP AR+VPL LADSAL++LVRVGDVVDVLAAP +P A R++ATDA
Sbjct 120 ADAAIALKAGPGARLVPLRLADSALIELVRVGDVVDVLAAPAAGTPGTPQAVPRVVATDA 179
Query 173 IVVLVSAQQKAQAADSDRVVLVALPARLANTVAGAALGQTVTLTLH 218
+VVLVSA+ KAQAAD DRVVLVALPAR+ANTVAG+ALGQ VTLTLH
Sbjct 180 VVVLVSAKPKAQAADGDRVVLVALPARVANTVAGSALGQAVTLTLH 225
>gi|240169343|ref|ZP_04748002.1| hypothetical protein MkanA1_08521 [Mycobacterium kansasii ATCC
12478]
Length=221
Score = 281 bits (720), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 171/222 (78%), Positives = 189/222 (86%), Gaps = 5/222 (2%)
Query 1 VAESSLNPSLVSRISAFLRPDWTRTVRARRFAAAGLVMLAGVAALRSNPEDDRSEVVVAA 60
+AE SLN SL SR++ LRPDWTRTV ARR AA GLV+LAGVAALRSN + D S+VVVAA
Sbjct 1 MAEPSLNASLFSRLTMLLRPDWTRTVLARRIAAGGLVLLAGVAALRSNTDADGSKVVVAA 60
Query 61 HDLRPGTALTPGDVRLEKRSATTLPDGSQADLDAVVGSTLASPTRRGEVLTDVRLLGSRL 120
DLRPG+ALT D+RLE RSA TLPDGSQ DL AVVGSTLA P RRGEVLTDVR+LGSRL
Sbjct 61 RDLRPGSALTYNDIRLETRSAATLPDGSQTDLGAVVGSTLAGPARRGEVLTDVRVLGSRL 120
Query 121 AESTAGPDARIVPLHLADSALVDLVRVGDVVDVLAAPVTDSPAAL----RLLATDAIVVL 176
AESTAGP ARIVPLHLADSAL+DLVRVGDVVDV+AAP TDSPAA +++ATDA+VVL
Sbjct 121 AESTAGPGARIVPLHLADSALIDLVRVGDVVDVVAAPATDSPAAASPVSKVVATDAVVVL 180
Query 177 VSAQQKAQAADSDRVVLVALPARLANTVAGAALGQTVTLTLH 218
VSA+ + Q+ D DRVVLV LPARLANTVAGA LGQTVTLTLH
Sbjct 181 VSAKPELQSHD-DRVVLVVLPARLANTVAGAVLGQTVTLTLH 221
>gi|118465730|ref|YP_880352.1| hypothetical protein MAV_1099 [Mycobacterium avium 104]
gi|118167017|gb|ABK67914.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=226
Score = 281 bits (718), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 160/226 (71%), Positives = 182/226 (81%), Gaps = 8/226 (3%)
Query 1 VAESSLNPSLVSRISAFLRPDWTRTVRARRFAAAGLVMLAGVAALRSNPEDDRSEVVVAA 60
+ ESSLNPS++SR+S +LRPDWTRTV ARR AA LV+LA +AALRS+P D + VVVA
Sbjct 1 MGESSLNPSVLSRLSVWLRPDWTRTVLARRIAAGTLVVLAAIAALRSDPAGDYAPVVVAE 60
Query 61 HDLRPGTALTPGDVRLEKRSATTLPDGSQADLDAVVGSTLASPTRRGEVLTDVRLLGSRL 120
HDLRPG ALT DVRLEKR A T+P+GS A++ AV+GSTLA P RRGEVLTDVRLLGSRL
Sbjct 61 HDLRPGAALTAADVRLEKRLAATVPEGSPAEIGAVLGSTLAGPARRGEVLTDVRLLGSRL 120
Query 121 AE----STAGPDARIVPLHLADSALVDLVRVGDVVDVLAAPVTDSP----AALRLLATDA 172
AE S A ARIVPLH AD AL+DLVR GDVVDVLAAP S AA ++LATDA
Sbjct 121 AEAAVGSKAAAGARIVPLHPADGALIDLVRPGDVVDVLAAPANTSAETTHAAPKVLATDA 180
Query 173 IVVLVSAQQKAQAADSDRVVLVALPARLANTVAGAALGQTVTLTLH 218
+VVLVSA++K QAA +DRVVLVALPA +ANTVAGAALGQTVTLTLH
Sbjct 181 VVVLVSAREKIQAAGADRVVLVALPAGVANTVAGAALGQTVTLTLH 226
>gi|183984494|ref|YP_001852785.1| hypothetical protein MMAR_4524 [Mycobacterium marinum M]
gi|183177820|gb|ACC42930.1| conserved hypothetical membrane protein [Mycobacterium marinum
M]
Length=219
Score = 268 bits (684), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 158/220 (72%), Positives = 186/220 (85%), Gaps = 3/220 (1%)
Query 1 VAESSLNPSLVSRISAFLRPDWTRTVRARRFAAAGLVMLAGVAALRSNPEDDRSEVVVAA 60
+A+ SLNP+L+SR++ +RP+WTRTV ARR A LV+LA VAAL +P+ + SEVVVAA
Sbjct 1 MADPSLNPTLLSRMAVSVRPEWTRTVLARRVVAGVLVVLAAVAALWPSPDTNLSEVVVAA 60
Query 61 HDLRPGTALTPGDVRLEKRSATTLPDGSQADLDAVVGSTLASPTRRGEVLTDVRLLGSRL 120
DL PGT LT DVRLE RSA TLPDGSQ D+ A+VG+TLASPTRRGEVLTDVR+LGSRL
Sbjct 61 RDLSPGTPLTTADVRLEMRSAATLPDGSQTDVGALVGATLASPTRRGEVLTDVRILGSRL 120
Query 121 AESTAGPDARIVPLHLADSALVDLVRVGDVVDVLAAPVTD--SPAALRLLATDAIVVLVS 178
AESTAGP AR+VPLHLADSAL+DL+RVGDVVDVLAAP T SP A +++ATDA+VVLVS
Sbjct 121 AESTAGPGARVVPLHLADSALIDLIRVGDVVDVLAAPPTTQPSPPAAKVVATDAVVVLVS 180
Query 179 AQQKAQAADSDRVVLVALPARLANTVAGAALGQTVTLTLH 218
A+Q+ Q +DRVVLVALPARLAN VAG+ALGQT+TLTLH
Sbjct 181 AKQELQ-THADRVVLVALPARLANMVAGSALGQTLTLTLH 219
>gi|254773979|ref|ZP_05215495.1| hypothetical protein MaviaA2_04794 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=226
Score = 261 bits (667), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 160/226 (71%), Positives = 182/226 (81%), Gaps = 8/226 (3%)
Query 1 VAESSLNPSLVSRISAFLRPDWTRTVRARRFAAAGLVMLAGVAALRSNPEDDRSEVVVAA 60
+ ESSLNPS++SR+S +LRPDWTRTV ARR AA LV+LA +AALRS+P D + VVVA
Sbjct 1 MGESSLNPSVLSRLSVWLRPDWTRTVLARRVAAGALVVLAAIAALRSDPAGDYAPVVVAE 60
Query 61 HDLRPGTALTPGDVRLEKRSATTLPDGSQADLDAVVGSTLASPTRRGEVLTDVRLLGSRL 120
HDLRPG ALT DVRLEKR A T+P+GS A++ AV+GSTLA P RRGEVLTDVRLLGSRL
Sbjct 61 HDLRPGAALTAADVRLEKRLAATVPEGSPAEIGAVLGSTLAGPARRGEVLTDVRLLGSRL 120
Query 121 AE----STAGPDARIVPLHLADSALVDLVRVGDVVDVLAAPVTDSP----AALRLLATDA 172
AE S A ARIVPLH AD AL+DLVR GDVVDVLAAP S AA ++LATDA
Sbjct 121 AEAAVGSKAAAGARIVPLHPADGALIDLVRPGDVVDVLAAPANTSAETTHAAPKVLATDA 180
Query 173 IVVLVSAQQKAQAADSDRVVLVALPARLANTVAGAALGQTVTLTLH 218
+VVLVSA++K QAA +DRVVLVALPA +ANTVAGAALGQTVTLTLH
Sbjct 181 VVVLVSAREKIQAAGADRVVLVALPAGVANTVAGAALGQTVTLTLH 226
>gi|41407019|ref|NP_959855.1| hypothetical protein MAP0921c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41395370|gb|AAS03238.1| hypothetical protein MAP_0921c [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=226
Score = 259 bits (663), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 159/226 (71%), Positives = 181/226 (81%), Gaps = 8/226 (3%)
Query 1 VAESSLNPSLVSRISAFLRPDWTRTVRARRFAAAGLVMLAGVAALRSNPEDDRSEVVVAA 60
+ ESSLNPS++SR+ +LRPDWTRTV ARR AA LV+LA +AALRS+P D + VVVA
Sbjct 1 MGESSLNPSVLSRLPVWLRPDWTRTVLARRIAAGALVVLAAIAALRSDPAGDYAPVVVAE 60
Query 61 HDLRPGTALTPGDVRLEKRSATTLPDGSQADLDAVVGSTLASPTRRGEVLTDVRLLGSRL 120
HDLRPG ALT DVRLEKR A T+P+GS A++ AV+GSTLA P RRGEVLTDVRLLGSRL
Sbjct 61 HDLRPGAALTAADVRLEKRLAATVPEGSPAEIGAVLGSTLAGPARRGEVLTDVRLLGSRL 120
Query 121 AE----STAGPDARIVPLHLADSALVDLVRVGDVVDVLAAPVTDSP----AALRLLATDA 172
AE S A ARIVPLH AD AL+DLVR GDVVDVLAAP S AA ++LATDA
Sbjct 121 AEAAVGSKAAAGARIVPLHPADGALIDLVRPGDVVDVLAAPANTSAETTHAAPKVLATDA 180
Query 173 IVVLVSAQQKAQAADSDRVVLVALPARLANTVAGAALGQTVTLTLH 218
+VVLVSA++K QAA +DRVVLVALPA +ANTVAGAALGQTVTLTLH
Sbjct 181 VVVLVSAREKIQAAGADRVVLVALPAGVANTVAGAALGQTVTLTLH 226
>gi|118619767|ref|YP_908099.1| hypothetical protein MUL_4696 [Mycobacterium ulcerans Agy99]
gi|118571877|gb|ABL06628.1| conserved hypothetical membrane protein [Mycobacterium ulcerans
Agy99]
Length=224
Score = 251 bits (642), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 155/225 (69%), Positives = 183/225 (82%), Gaps = 8/225 (3%)
Query 1 VAESSLNPSLVSRISAFLRPDWTRTVRARRFAAAGLVMLAGVAALRSNPEDDRSEVVVAA 60
+A+ SLNP+L+SRI+ +RP+WTRTV ARR A LV+LA VAAL +P+ + EVVVAA
Sbjct 1 MADPSLNPTLLSRIAVSVRPEWTRTVLARRVVAGLLVVLAAVAALWPSPDTNLCEVVVAA 60
Query 61 HDLRPGTALTPGDVRLEKRSATTLPDGSQADLDAVVGSTLASPTRRGEVLTDVRLLGSRL 120
DL PGT LT DVRLE RSA TLPDG Q D+ A+VG+TLASPTRRGE+LTDVR+LGSRL
Sbjct 61 RDLSPGTPLTIADVRLETRSAATLPDGPQTDVGALVGATLASPTRRGEMLTDVRILGSRL 120
Query 121 AESTAGPDARIVPLHLADSALVDLVRVGDVVDVLAAPVT-------DSPAALRLLATDAI 173
AESTAGP AR+VPLHLADSAL+DL+RVGDVVDVLAAP T SP A +++ATDA+
Sbjct 121 AESTAGPGARVVPLHLADSALIDLIRVGDVVDVLAAPPTDAPAANQPSPPAAKVVATDAV 180
Query 174 VVLVSAQQKAQAADSDRVVLVALPARLANTVAGAALGQTVTLTLH 218
VVLVSA+Q+ Q + RVVLVALPARLAN VAG+ALGQT+TLTLH
Sbjct 181 VVLVSAKQELQ-THAHRVVLVALPARLANMVAGSALGQTLTLTLH 224
>gi|108801257|ref|YP_641454.1| hypothetical protein Mmcs_4293 [Mycobacterium sp. MCS]
gi|119870408|ref|YP_940360.1| SAF domain-containing protein [Mycobacterium sp. KMS]
gi|108771676|gb|ABG10398.1| conserved hypothetical protein [Mycobacterium sp. MCS]
gi|119696497|gb|ABL93570.1| SAF domain [Mycobacterium sp. KMS]
Length=218
Score = 238 bits (606), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 135/217 (63%), Positives = 168/217 (78%), Gaps = 3/217 (1%)
Query 4 SSLNPSLVSRISAFLRPDWTRTVRARRFAAAGLVMLAGVAALRSNPEDDRSEVVVAAHDL 63
SL+P+ ++R++ LRPDW+RTV ARR AA LVMLA VAA+RS+P+ D+ +VVVAA DL
Sbjct 3 ESLDPTPIARLTG-LRPDWSRTVTARRIVAAVLVMLAAVAAVRSDPDGDQVDVVVAATDL 61
Query 64 RPGTALTPGDVRLEKRSATTLPDGSQADLDAVVGSTLASPTRRGEVLTDVRLLGSRLAES 123
PGT L DVR+E+R TT+PDG+ D AV+G+T+A PTRRGEVLTDVRLLG R+AE+
Sbjct 62 TPGTELAESDVRVERRPLTTVPDGAAVDPTAVIGATVAGPTRRGEVLTDVRLLGPRIAEA 121
Query 124 TAGPDARIVPLHLADSALVDLVRVGDVVDVLAAPVTDS--PAALRLLATDAIVVLVSAQQ 181
AGPDARIV L LAD ALVDLVR GDVVDVLAAP +++ A R++AT A+VVLVS ++
Sbjct 122 AAGPDARIVSLQLADGALVDLVRTGDVVDVLAAPASNTGEEARPRVIATRAVVVLVSEKR 181
Query 182 KAQAADSDRVVLVALPARLANTVAGAALGQTVTLTLH 218
+ A +R VLVALPA+ AN VAGA+L Q VTLT H
Sbjct 182 QGPGAAGERAVLVALPAQAANDVAGASLTQAVTLTFH 218
>gi|169628178|ref|YP_001701827.1| hypothetical protein MAB_1083c [Mycobacterium abscessus ATCC
19977]
gi|169240145|emb|CAM61173.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=224
Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 128/224 (58%), Positives = 158/224 (71%), Gaps = 6/224 (2%)
Query 1 VAESSLNPSLVSRISAFLRPDWTRTVRARRFAAAGLVMLAGVAALRSNPEDDRSEVVVAA 60
+A S L+P+ + RISA LRPDW RTV ARR AAA LV+ A + A R +P DDR+EVVVAA
Sbjct 1 MARSPLDPTALQRISAALRPDWARTVLARRIAAAILVLFAALLAFRPDPADDRAEVVVAA 60
Query 61 HDLRPGTALTPGDVRLEKRSATTLPDGSQADLDAVVGSTLASPTRRGEVLTDVRLLGSRL 120
DL PGT L+ DVRLEKRS T LPDG + + + G+TLA P RRGE+LTDVR+LG RL
Sbjct 61 RDLSPGTILSSDDVRLEKRSTTILPDGVRTESATLFGATLAGPVRRGEMLTDVRVLGPRL 120
Query 121 AESTAGPDARIVPLHLADSALVDLVRVGDVVDVLA------APVTDSPAALRLLATDAIV 174
AES AG DARIVP+ LAD+A VD++R GDVVD+L D+PA +LA+ A+V
Sbjct 121 AESAAGKDARIVPVPLADAATVDMIRTGDVVDILTVAGHEPGAARDTPAEPTVLASGAVV 180
Query 175 VLVSAQQKAQAADSDRVVLVALPARLANTVAGAALGQTVTLTLH 218
VLVS + A+ ++RVV+VALP + AN VA AL Q VTLT
Sbjct 181 VLVSPKPAAKGVGTERVVMVALPPQQANRVAAIALVQAVTLTFR 224
>gi|120405786|ref|YP_955615.1| SAF domain-containing protein [Mycobacterium vanbaalenii PYR-1]
gi|119958604|gb|ABM15609.1| SAF domain [Mycobacterium vanbaalenii PYR-1]
Length=217
Score = 218 bits (555), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 133/215 (62%), Positives = 164/215 (77%), Gaps = 2/215 (0%)
Query 5 SLNPSLVSRISAFLRPDWTRTVRARRFAAAGLVMLAGVAALRSNPEDDRSEVVVAAHDLR 64
SL+P+ + R+ LRPDWTRT ARR A LV+LAGVAA R +P+ ++S+VVV HDL
Sbjct 4 SLDPTALDRLGRVLRPDWTRTPTARRVVAGALVVLAGVAAWRGDPQAEQSDVVVTLHDLS 63
Query 65 PGTALTPGDVRLEKRSATTLPDGSQADLDAVVGSTLASPTRRGEVLTDVRLLGSRLAEST 124
PG +T DVR+E RSA+T+P+G+ +D+DAVVG+TLA PTRRGE++TDVRLL SRLAES
Sbjct 64 PGAEITAADVRVETRSASTVPEGAHSDVDAVVGATLAGPTRRGEIVTDVRLLSSRLAESA 123
Query 125 AGPDARIVPLHLADSALVDLVRVGDVVDVLAAPVTDSPAALRLLATDAIVVLVSAQQKAQ 184
AGPDARIVP+ LAD+AL DLVR GDVVD++A P D A RL+ATDA+VVLVSA+Q
Sbjct 124 AGPDARIVPIPLADAALTDLVRAGDVVDIVAGP-ADEAGAARLIATDAVVVLVSAEQNGV 182
Query 185 AADS-DRVVLVALPARLANTVAGAALGQTVTLTLH 218
+ S R+VLVAL A A VAGA L + VTLTLH
Sbjct 183 GSRSGGRIVLVALAATAAKAVAGATLVEPVTLTLH 217
>gi|126437236|ref|YP_001072927.1| SAF domain-containing protein [Mycobacterium sp. JLS]
gi|126237036|gb|ABO00437.1| SAF domain [Mycobacterium sp. JLS]
Length=218
Score = 215 bits (548), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 135/217 (63%), Positives = 167/217 (77%), Gaps = 3/217 (1%)
Query 4 SSLNPSLVSRISAFLRPDWTRTVRARRFAAAGLVMLAGVAALRSNPEDDRSEVVVAAHDL 63
SL+P+ ++R++ LRPDW+RTV ARR AAA LVMLA VAA+RS+P+ D+ +VVVAA DL
Sbjct 3 ESLDPAPLARLTG-LRPDWSRTVTARRIAAAVLVMLAAVAAVRSDPDGDQVDVVVAATDL 61
Query 64 RPGTALTPGDVRLEKRSATTLPDGSQADLDAVVGSTLASPTRRGEVLTDVRLLGSRLAES 123
PG L DVR+E+R TT+PDG+ D AV+G T+A PTRRGEVLTD+RLLG R+AE+
Sbjct 62 TPGMDLAESDVRVERRPLTTVPDGAAKDPTAVIGMTVAGPTRRGEVLTDLRLLGPRIAEA 121
Query 124 TAGPDARIVPLHLADSALVDLVRVGDVVDVLAAPVTDSPAAL--RLLATDAIVVLVSAQQ 181
AGPDARIV L LAD ALVDLVR GDVVDVLAAP +D+ A R++AT A+VVLVS ++
Sbjct 122 AAGPDARIVSLQLADGALVDLVRTGDVVDVLAAPTSDTGADARPRVIATRAVVVLVSEKR 181
Query 182 KAQAADSDRVVLVALPARLANTVAGAALGQTVTLTLH 218
+ A +R VLVALPA+ AN VAGA+L Q VTLT H
Sbjct 182 QGPGAAGERAVLVALPAQAANEVAGASLTQAVTLTFH 218
>gi|118469802|ref|YP_889718.1| hypothetical protein MSMEG_5481 [Mycobacterium smegmatis str.
MC2 155]
gi|118171089|gb|ABK71985.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=216
Score = 215 bits (547), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 137/214 (65%), Positives = 168/214 (79%), Gaps = 3/214 (1%)
Query 6 LNPSLVSRISAFLRPDWTRTVRARRFAAAGLVMLAGVAALRSNPEDDRSEVVVAAHDLRP 65
LNP+ R++A +RPDWTRTV ARR AAAGLV+LA VAA+RS+P D +V VAA DL P
Sbjct 5 LNPTAWHRLTAAMRPDWTRTVAARRAAAAGLVLLAAVAAVRSDPRGDHVDVAVAARDLVP 64
Query 66 GTALTPGDVRLEKRSATTLPDGSQADLDAVVGSTLASPTRRGEVLTDVRLLGSRLAESTA 125
GTALT DVRLE RSA+TLPDG+Q+D+ A+VG+TLA P RRGEVLTDVR++GSRLA+
Sbjct 65 GTALTAEDVRLESRSASTLPDGAQSDVGAIVGATLAGPMRRGEVLTDVRVIGSRLADLAV 124
Query 126 GPDARIVPLHLADSALVDLVRVGDVVDVLAAPVTDSPAAL-RLLATDAIVVLVSAQQKAQ 184
GPDARIVPL L D+AL+D++R GDVVDVL ++ +A RL+A+DA+VVLVS QK +
Sbjct 125 GPDARIVPLSLGDAALLDVIRAGDVVDVLTTHDEEAKSATPRLIASDAVVVLVS--QKPK 182
Query 185 AADSDRVVLVALPARLANTVAGAALGQTVTLTLH 218
A DRV LVALPAR A+ VA A+L Q VTLT+H
Sbjct 183 GAGQDRVALVALPARSAHEVAAASLTQAVTLTIH 216
>gi|333989578|ref|YP_004522192.1| hypothetical protein JDM601_0938 [Mycobacterium sp. JDM601]
gi|333485546|gb|AEF34938.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=217
Score = 205 bits (522), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 133/219 (61%), Positives = 159/219 (73%), Gaps = 5/219 (2%)
Query 1 VAESSLNPSLVSRISAFLRPDWTRTVRARRFAAAGLVMLAGVAALRSNPEDDRSEVVVAA 60
V SLNP+LVSR+S+ LRPDW RT+ ARR A LV+LAGVA +RS+P+ DR +VVVA+
Sbjct 3 VMGESLNPTLVSRVSSLLRPDWARTMLARRVVAGALVVLAGVATIRSDPQSDRVDVVVAS 62
Query 61 HDLRPGTALTPGDVRLEKRSATTLPDGSQADLDAVVGSTLASPTRRGEVLTDVRLLGSRL 120
D+ PGT LT DV LE RSA T+PDG D+ +V+ +TLA P RRGE+LTDVRLLGSRL
Sbjct 63 RDIAPGTPLTAEDVSLESRSARTVPDGVATDVSSVLHTTLAGPARRGELLTDVRLLGSRL 122
Query 121 AESTAGPDARIVPLHLADSALVDLVRVGDVVDVLAA-PVTDSPAALRLLATDAIVVLVSA 179
E+ AG DARIV +H AD+AL DLVR GDVVD++ A +D P A ++LAT IVVLVS
Sbjct 123 TEAAAGRDARIVGVHPADAALTDLVRTGDVVDIVTADDASDPPGAPKVLATGGIVVLVSD 182
Query 180 QQKAQAADSDRVVLVALPARLANTVAGAALGQTVTLTLH 218
+Q DRVVLVALPA A VAGA L Q VTLTL
Sbjct 183 KQNHD----DRVVLVALPATAAVVVAGATLAQAVTLTLR 217
>gi|145222484|ref|YP_001133162.1| SAF domain-containing protein [Mycobacterium gilvum PYR-GCK]
gi|315442930|ref|YP_004075809.1| flagellar basal body P-ring biosynthesis protein [Mycobacterium
sp. Spyr1]
gi|145214970|gb|ABP44374.1| SAF domain [Mycobacterium gilvum PYR-GCK]
gi|315261233|gb|ADT97974.1| flagellar basal body P-ring biosynthesis protein [Mycobacterium
sp. Spyr1]
Length=217
Score = 199 bits (507), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 135/216 (63%), Positives = 158/216 (74%), Gaps = 2/216 (0%)
Query 4 SSLNPSLVSRISAFLRPDWTRTVRARRFAAAGLVMLAGVAALRSNPEDDRSEVVVAAHDL 63
+ L+PS + R+S LRPDW+RT ARR A LV+LA VAA R +P+ DRSEVVV DL
Sbjct 3 NPLDPSPLHRVSRALRPDWSRTPAARRVLAGLLVVLAAVAAWRGDPDADRSEVVVTVRDL 62
Query 64 RPGTALTPGDVRLEKRSATTLPDGSQADLDAVVGSTLASPTRRGEVLTDVRLLGSRLAES 123
PG ALT DVR+E R+A LPDG+ D+D VV +TLA P R+GEVLTDVRLLG RLA S
Sbjct 63 APGVALTAADVRVESRAAPLLPDGALTDVDEVVDATLAGPARQGEVLTDVRLLGPRLARS 122
Query 124 TAGPDARIVPLHLADSALVDLVRVGDVVDVLAAPVTDSPAALRLLATDAIVVLVSAQQKA 183
AGPDARIVP+ LAD+ALVDLVR GDVVD++AA D A R +ATDAIVVLVSA +
Sbjct 123 AAGPDARIVPIPLADAALVDLVRPGDVVDIVAA-PADDAVAARTVATDAIVVLVSAAENG 181
Query 184 QAADS-DRVVLVALPARLANTVAGAALGQTVTLTLH 218
A + RVVLVALPA A VAGAAL + +TLTLH
Sbjct 182 IGARAGGRVVLVALPAAGAERVAGAALVEAITLTLH 217
>gi|336461405|gb|EGO40276.1| SAF domain-containing protein [Mycobacterium avium subsp. paratuberculosis
S397]
Length=205
Score = 199 bits (505), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 126/186 (68%), Positives = 144/186 (78%), Gaps = 8/186 (4%)
Query 17 FLRPDWTRTVRARRFAAAGLVMLAGVAALRSNPEDDRSEVVVAAHDLRPGTALTPGDVRL 76
+LRPDWTRTV ARR AA LV+LA +AALRS+P D + VVVA HDLRPG ALT DVRL
Sbjct 2 WLRPDWTRTVLARRIAAGALVVLAAIAALRSDPAGDYAPVVVAEHDLRPGAALTAADVRL 61
Query 77 EKRSATTLPDGSQADLDAVVGSTLASPTRRGEVLTDVRLLGSRLAE----STAGPDARIV 132
EKR A T+P+GS A++ AV+GSTLA P RRGEVLTDVRLLGSRLAE S A ARIV
Sbjct 62 EKRLAATVPEGSPAEIGAVLGSTLAGPARRGEVLTDVRLLGSRLAEAAVGSKAAAGARIV 121
Query 133 PLHLADSALVDLVRVGDVVDVLAAPVTDSP----AALRLLATDAIVVLVSAQQKAQAADS 188
PLH AD AL+DLVR GDVVDVLAAP S AA ++LATDA+VVLVSA++K QAA +
Sbjct 122 PLHPADGALIDLVRPGDVVDVLAAPANTSAETTHAAPKVLATDAVVVLVSAREKIQAAGA 181
Query 189 DRVVLV 194
DRVV +
Sbjct 182 DRVVWL 187
>gi|325676315|ref|ZP_08155994.1| hypothetical protein HMPREF0724_13777 [Rhodococcus equi ATCC
33707]
gi|325552876|gb|EGD22559.1| hypothetical protein HMPREF0724_13777 [Rhodococcus equi ATCC
33707]
Length=234
Score = 155 bits (393), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 112/222 (51%), Positives = 139/222 (63%), Gaps = 7/222 (3%)
Query 3 ESSLNPSLVSRISAFLRPDWTRTVRARRFAAAGLVMLAGVAALRSNPEDDRSEVVVAAHD 62
++SL P+L+ R+ A +RPDW RT ARR A L++ AGV LR D + V+VAAHD
Sbjct 14 DASLAPTLLGRVGAAVRPDWARTDTARRVTAGVLIVAAGVLLLRDGLRDSGAPVLVAAHD 73
Query 63 LRPGTALTPGDVRLEKRSATTLPDGSQADLDAVVGSTLASPTRRGEVLTDVRLLGSRLAE 122
L PGT LTP DVR+ R LP+GS + G T+ASP R GE+LTDVRLLG RL E
Sbjct 74 LTPGTVLTPDDVRVVARPDPDLPEGSVRVVADASGRTVASPVRAGEMLTDVRLLGPRLTE 133
Query 123 STAG-PDARIVPLHLADSALVDLVRVGDVVDVLAAPVTDSPAALR-----LLATDAIVVL 176
+ AG PDAR+VP+ L D L +L+R GD VDVL T P R +LATDA VVL
Sbjct 134 AAAGAPDARMVPVRLTDPGLSELIRAGDRVDVLTVDQTSGPTETRRPAATVLATDATVVL 193
Query 177 VSAQQKAQAADSDRVVLVALPARLANTVAGAALGQTVTLTLH 218
VS + A DRVV++ALPA A VA A+L +T+TL
Sbjct 194 VSPESSG-AGRRDRVVMLALPAPAAGAVATASLTDALTVTLR 234
>gi|111022595|ref|YP_705567.1| hypothetical protein RHA1_ro05629 [Rhodococcus jostii RHA1]
gi|110822125|gb|ABG97409.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=237
Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 111/224 (50%), Positives = 137/224 (62%), Gaps = 9/224 (4%)
Query 2 AESSLNPSLVSRISAFLRPDWTRTVRARRFAAAGLVMLAGVAALRSNPEDDRSEVVVAAH 61
A SL+PS R+S F P W RT+ ARR AA LV LA R +P+ RS VVVAA
Sbjct 16 AHRSLSPSWADRLSDFAHPGWARTLVARRVLAAALVCLALALLARGDPDSARSAVVVAAR 75
Query 62 DLRPGTALTPGDVRLEKRSATTLPDGSQADLDAVVGSTLASPTRRGEVLTDVRLLGSRLA 121
DL+PG LT DV L A TLPDG+ L V G TLA PTR GE LTDVR+LG RLA
Sbjct 76 DLQPGVVLTDADVELVDLEAGTLPDGAVTALADVDGRTLAGPTRAGEALTDVRVLGPRLA 135
Query 122 ESTAG-PDARIVPLHLADSALVDLVRVGDVVDVLAAPVTDSPA------ALRLLATDAIV 174
+ AG DARIVP+ LAD A+ +L+R GD VDVL D+PA +LA+ A+V
Sbjct 136 AAAAGMDDARIVPVRLADPAVTELLREGDRVDVLTVD-PDTPANPDRRSGATVLASRAVV 194
Query 175 VLVSAQQKAQAADSDRVVLVALPARLANTVAGAALGQTVTLTLH 218
VLV+ + + +RVV++ALPA A TVA A+L +T+T
Sbjct 195 VLVTPSENGR-DQRERVVMLALPASEATTVAAASLTSAITVTFQ 237
>gi|312138618|ref|YP_004005954.1| hypothetical protein REQ_11700 [Rhodococcus equi 103S]
gi|311887957|emb|CBH47269.1| hypothetical protein REQ_11700 [Rhodococcus equi 103S]
Length=206
Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 106/207 (52%), Positives = 128/207 (62%), Gaps = 7/207 (3%)
Query 18 LRPDWTRTVRARRFAAAGLVMLAGVAALRSNPEDDRSEVVVAAHDLRPGTALTPGDVRLE 77
+RPDW RT ARR A L++ AGV LR D + V+VAAHDL PGT LTP DVR+
Sbjct 1 MRPDWARTDTARRVTAGVLIVAAGVLLLRDGLRDSGAPVLVAAHDLTPGTVLTPDDVRVV 60
Query 78 KRSATTLPDGSQADLDAVVGSTLASPTRRGEVLTDVRLLGSRLAESTAG-PDARIVPLHL 136
R LP+GS + G T+ASP R GE+LTDVRLLG RL E+ AG PDAR+VP+ L
Sbjct 61 ARPDPDLPEGSVRVVADASGRTVASPVRAGEMLTDVRLLGPRLTEAAAGAPDARMVPVRL 120
Query 137 ADSALVDLVRVGDVVDVLAAPVTDSPAALR-----LLATDAIVVLVSAQQKAQAADSDRV 191
D L +L+R GD VDVL T P R +LATDA VVLVS + A DRV
Sbjct 121 TDPGLSELIRAGDRVDVLTVDQTSGPTETRRPAATVLATDATVVLVSPESSG-AGRRDRV 179
Query 192 VLVALPARLANTVAGAALGQTVTLTLH 218
V++ALPA A VA A+L +T+TL
Sbjct 180 VMLALPAPAAGAVATASLTDALTVTLR 206
>gi|226365103|ref|YP_002782886.1| hypothetical protein ROP_56940 [Rhodococcus opacus B4]
gi|226243593|dbj|BAH53941.1| hypothetical protein [Rhodococcus opacus B4]
Length=227
Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 109/223 (49%), Positives = 135/223 (61%), Gaps = 7/223 (3%)
Query 2 AESSLNPSLVSRISAFLRPDWTRTVRARRFAAAGLVMLAGVAALRSNPEDDRSEVVVAAH 61
A SL+PS R+S P W RTV ARR AA LV LA R +P RS VVAA
Sbjct 6 AHRSLSPSWADRLSDLTHPGWARTVVARRILAAALVCLALALLARGDPGSARSAAVVAAR 65
Query 62 DLRPGTALTPGDVRLEKRSATTLPDGSQADLDAVVGSTLASPTRRGEVLTDVRLLGSRLA 121
DL+PG LT DV L + A +LPDG+ + V G TLA PTR GE LTDVR+LG RLA
Sbjct 66 DLQPGVVLTKADVELVELEAGSLPDGAVTAVADVDGRTLAGPTRAGETLTDVRVLGPRLA 125
Query 122 ESTAG-PDARIVPLHLADSALVDLVRVGDVVDVLAA-PVTDSPAALR----LLATDAIVV 175
+ AG DARIVP+ LAD A+ +L+R GD VDVL P T S R +LA+ A+VV
Sbjct 126 AAAAGMDDARIVPVRLADPAVTELLREGDRVDVLTVDPDTPSNPDRRPGATVLASRAVVV 185
Query 176 LVSAQQKAQAADSDRVVLVALPARLANTVAGAALGQTVTLTLH 218
LV+ + + +RVV++ALPA A TVA A+L +T+T
Sbjct 186 LVTPSENGR-DQRERVVMLALPASDATTVAAASLTSAITVTFQ 227
>gi|229495106|ref|ZP_04388852.1| SAF domain protein [Rhodococcus erythropolis SK121]
gi|229318037|gb|EEN83912.1| SAF domain protein [Rhodococcus erythropolis SK121]
Length=234
Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/233 (38%), Positives = 126/233 (55%), Gaps = 17/233 (7%)
Query 2 AESSLNPSLVSRISAFLRPDWTRTVRARRFAAAGLVMLAGVAALRSNPEDDRSEVVVAAH 61
A+ L P+ R+ R R+ R+ AA L L V R +P D VVV++
Sbjct 3 AQLDLTPNTFDRVVELTRGTRFRSATVRKIAAVVLATLGVVLFFRGDPATDTVAVVVSSR 62
Query 62 DLRPGTALTPGDVRLEKRSATTLPDGSQADLDAVVGSTLASPTRRGEVLTDVRLLGSRLA 121
DL PG + DV + + + LP+G +D D VVG T+A P R GE +TDVR+L RLA
Sbjct 63 DLTPGQVIADSDVEIREIDSKQLPEGVVSDTDLVVGRTVAGPIRSGETVTDVRVLNRRLA 122
Query 122 ESTAGP-DARIVPLHLADSALVDLVRVGDVVDVLA---------APVTDSP------AAL 165
+ G DARIVP+ LAD+A+ +++R GDVVDVL P D+P A
Sbjct 123 GLSVGTDDARIVPVRLADAAVAEILRSGDVVDVLTVGPDTSRPDTPHPDTPNESVADKAP 182
Query 166 RLLATDAIVVLVSAQQKAQAADSDRVVLVALPARLANTVAGAALGQTVTLTLH 218
++LA A+V LV+ + + ++V+L+ALP AN VA A+L +T+T
Sbjct 183 QILAAGAVVALVTTSESTR-NQQEQVILLALPTPAANVVAAASLSNAITVTFR 234
>gi|226307879|ref|YP_002767839.1| hypothetical protein RER_43920 [Rhodococcus erythropolis PR4]
gi|226186996|dbj|BAH35100.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
Length=248
Score = 121 bits (304), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 92/233 (40%), Positives = 128/233 (55%), Gaps = 17/233 (7%)
Query 2 AESSLNPSLVSRISAFLRPDWTRTVRARRFAAAGLVMLAGVAALRSNPEDDRSEVVVAAH 61
A+ L+PS R+ R RT R+ AA L L V R +P D VVV++
Sbjct 17 AQLDLSPSTFDRVVELTRGTRFRTATVRKIAAVALAALGVVLFFRGDPATDTVAVVVSSR 76
Query 62 DLRPGTALTPGDVRLEKRSATTLPDGSQADLDAVVGSTLASPTRRGEVLTDVRLLGSRLA 121
DL PG + DV + + + LP+G +D D VVG T+A P R GE +TDVR+L RLA
Sbjct 77 DLTPGQVIADSDVEIREIDSKQLPEGVVSDTDLVVGRTVAGPIRSGETVTDVRVLSPRLA 136
Query 122 ESTAGP-DARIVPLHLADSALVDLVRVGDVVDVLA-APVT--------DSP------AAL 165
+ G DARIVP+ LAD+A+ D++R GDVVDVL P T D+P A
Sbjct 137 GLSVGTDDARIVPVRLADAAVADMLRSGDVVDVLTVGPDTSRTDTSRPDTPNESIADQAP 196
Query 166 RLLATDAIVVLVSAQQKAQAADSDRVVLVALPARLANTVAGAALGQTVTLTLH 218
++LA A+V LV+ + + ++V+L+ALP AN VA A+L +T+T
Sbjct 197 QILAAGAVVALVTTSESTRNQ-QEQVILLALPTPAANVVAAASLSNAITVTFR 248
>gi|317506822|ref|ZP_07964596.1| SAF domain-containing protein [Segniliparus rugosus ATCC BAA-974]
gi|316254896|gb|EFV14192.1| SAF domain-containing protein [Segniliparus rugosus ATCC BAA-974]
Length=227
Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 89/214 (42%), Positives = 127/214 (60%), Gaps = 14/214 (6%)
Query 17 FLRPDWTRTVRARRFAAAGLVMLAGVAALRSNPEDDRSEVVVAAHDLRPGTALTPGDVRL 76
+ R W R V ARR AA L++LA A+R+ VVVAAHDL+PG AL P D+ +
Sbjct 14 YARLSWWRLVAARRIAATLLLLLAAGLAVRAQLHPGELPVVVAAHDLKPGAALLPADLGI 73
Query 77 EKRSATTLPDGSQADLDAVVGSTLASPTRRGEVLTDVRLLGSRLAE-STAGPDARIVPLH 135
+ +P+G+ + +VG T+A P R GE LTD R++ RLA+ +T+ P+ARIVP+
Sbjct 74 RRLPPDQVPEGAATAAEQLVGRTVAGPVRTGETLTDARVIAPRLAQLATSVPEARIVPVR 133
Query 136 LADSALVDLVRVGDVVDVLAAP---------VTDSPAALR---LLATDAIVVLVSAQQKA 183
L D AL D++R GDVVDV+ P T LR +LA A+V+LVS +++
Sbjct 134 LPDQALADMLRPGDVVDVITVPQRQSGLPEDATTKQTGLRPPEVLARGAVVLLVSEPERS 193
Query 184 QAADSDRVVLVALPARLANTVAGAALGQTVTLTL 217
++ + RV L+A+ + A TVA A L Q VT+ L
Sbjct 194 RSPEG-RVALIAMADKPAQTVAAATLVQPVTVIL 226
>gi|296393686|ref|YP_003658570.1| SAF domain-containing protein [Segniliparus rotundus DSM 44985]
gi|296180833|gb|ADG97739.1| SAF domain protein [Segniliparus rotundus DSM 44985]
Length=227
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 93/225 (42%), Positives = 125/225 (56%), Gaps = 20/225 (8%)
Query 9 SLVSRISAFL----RPDWTRTVRARRFAAAGLVMLAGVAALRSNPEDDRSEVVVAAHDLR 64
S +R S + R W R V ARR AA L++LAG A+R++ ++ VVAAHDLR
Sbjct 2 SFSTRFSTYAAWHRRLSWWRLVAARRVAAGLLLLLAGGLAIRAHARPGQAAAVVAAHDLR 61
Query 65 PGTALTPGDVRLEKRSATTLPDGSQADLDAVVGSTLASPTRRGEVLTDVRLLGSRLAE-S 123
PG AL P D+ + S +P G+ AD ++G T+A P R GE LTDVR++ RLA +
Sbjct 62 PGVALGPADLAVRSLSPGDVPAGAVADPRQLLGRTVAGPVRSGEALTDVRIITPRLAGLA 121
Query 124 TAGPDARIVPLHLADSALVDLVRVGDVVDVLAAPVTDSPAAL-------------RLLAT 170
TA PDAR V + L D L D++R GDVVDV+ P P A +LA
Sbjct 122 TAIPDARAVSVRLPDQTLADMLRPGDVVDVVTVP-QHQPGATEDAATKQTGIRPPEVLAQ 180
Query 171 DAIVVLVSAQQKAQAADSDRVVLVALPARLANTVAGAALGQTVTL 215
A+V+LVS +++ AA RV L+A+ A VA L Q VT+
Sbjct 181 AAVVLLVSEPERSSAAQG-RVALLAMDNTAAQKVAAVTLIQAVTV 224
>gi|54026930|ref|YP_121172.1| hypothetical protein nfa49560 [Nocardia farcinica IFM 10152]
gi|54018438|dbj|BAD59808.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=221
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/203 (44%), Positives = 117/203 (58%), Gaps = 5/203 (2%)
Query 19 RPDWTRTVRARRFAAAGLVMLAGVAALRSNPEDDRSEVVVAAHDLRPGTALTPGDVRLEK 78
RP W ARR A LV +A V LR +P R VVVAA +L PGT L D+ +
Sbjct 21 RPSWVDATLARRILAGALVAVAVVLQLRGDPGAARIPVVVAARELPPGTVLAAADLTVAP 80
Query 79 RSATTLPDGSQADLDAVVGSTLASPTRRGEVLTDVRLLGSRLAESTAG-PDARIVPLHLA 137
A +LP G+ D + G+TL + GEV TD+R++G RLAE A PDARIVP+ LA
Sbjct 81 HEAGSLPAGAVRDPAVLTGATLTAAMHPGEVFTDLRVVGPRLAEVAASTPDARIVPIRLA 140
Query 138 DSALVDLVRVGDVVDVLAAPVTDSPAA--LRLLATDAIVVLVSAQQKAQAADSDRVVLVA 195
D+A+ +++R GD VDV+ D +R LA DA VVLVS + + ++RVVLVA
Sbjct 141 DTAVAEILRAGDRVDVIGGETDDDSGTRPVRTLAADAAVVLVS--EPTERGRAERVVLVA 198
Query 196 LPARLANTVAGAALGQTVTLTLH 218
+ A A VA A+L +T+ H
Sbjct 199 MDAEHAVAVAAASLHTALTVVFH 221
>gi|296140955|ref|YP_003648198.1| SAF domain-containing protein [Tsukamurella paurometabola DSM
20162]
gi|296029089|gb|ADG79859.1| SAF domain protein [Tsukamurella paurometabola DSM 20162]
Length=218
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/152 (44%), Positives = 88/152 (58%), Gaps = 1/152 (0%)
Query 4 SSLNPSLVSRISAFLRPDWTRTVRARRFAAAGLVMLAGVAALRSNPEDDRSEVVVAAHDL 63
+SL P+ RI A LRP W RT+ ARR AA L +LA V A+ S P ++EV+ AA +L
Sbjct 2 NSLQPTGAERIRAALRPGWARTLTARRAAAGVLTVLALVVAVTSEPSGPQTEVLTAAREL 61
Query 64 RPGTALTPGDVRLEKRSATTLPDGSQADLDAVVGSTLASPTRRGEVLTDVRLLGSRLAES 123
PG L D+RL A P + VG ++ P GE+LTD R+L R A
Sbjct 62 GPGGRLADADLRLTTVPAELAPPDALTSTGQAVGRSVTGPVGAGEILTDRRVLTDRTAGQ 121
Query 124 TAGPDARIVPLHLADSALVDLVRVGDVVDVLA 155
P +R+VP+ L D+A +DL+R GDVVDV+A
Sbjct 122 IR-PGSRLVPVALQDAATMDLLRPGDVVDVVA 152
>gi|262201376|ref|YP_003272584.1| SAF domain-containing protein [Gordonia bronchialis DSM 43247]
gi|262084723|gb|ACY20691.1| SAF domain protein [Gordonia bronchialis DSM 43247]
Length=220
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 84/219 (39%), Positives = 117/219 (54%), Gaps = 11/219 (5%)
Query 4 SSLNPSLVSRISAFLRPDWTRTVRARRFAAAGLVMLAGVAALRSNPEDDRSEVVVAAHDL 63
+ L P R+ LRP WTRTV RR A+ L++ A + V+VA H+L
Sbjct 9 TGLAPRWRDRLGYALRPGWTRTVLVRRGASIVLLVAAVAVGVAGQRTTGEQPVLVAVHEL 68
Query 64 RPGTALTPGDVRLEKRSATTLPDGSQADLDAVVGSTLASPTRRGEVLTDVRLLGSRL-AE 122
RPG LT DV + + ++ +PDG+ +G T+A R GE++TD RLL + L A+
Sbjct 69 RPGQPLTAEDVTVVRVPSSLMPDGALVSPAEGLGRTVAGRVRVGELVTDARLLTAHLPAD 128
Query 123 STAGPDARIVPLHLADSALVDLVRVGDVVDVLAAPVTDSPAALRLLATDAIVVLVSAQQK 182
T DAR+VP+HLAD L L+R GDVVDVL SP A +LA A+V L +
Sbjct 129 LTGLDDARLVPVHLADETLTSLLRSGDVVDVL------SPEA-EVLARGAVVALPAGDAG 181
Query 183 A---QAADSDRVVLVALPARLANTVAGAALGQTVTLTLH 218
+ A + R VL+A+ A+ VA A L + + LH
Sbjct 182 SGGLTARSATRPVLLAMAEASAHRVAAAGLDAPLAVVLH 220
>gi|343925208|ref|ZP_08764735.1| hypothetical protein GOALK_038_00120 [Gordonia alkanivorans NBRC
16433]
gi|343764805|dbj|GAA11661.1| hypothetical protein GOALK_038_00120 [Gordonia alkanivorans NBRC
16433]
Length=216
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 89/218 (41%), Positives = 121/218 (56%), Gaps = 12/218 (5%)
Query 6 LNPSLVSRISAFLRPDWTRTVRARRFAAAGLVMLAGVAALRSNPEDDRSEVVVAAHDLRP 65
L P L RI+ +RP WTR++ RR A L++ A V A+ D EV+VAAHDL P
Sbjct 6 LGPRLGDRIAHAVRPGWTRSLAVRRLVAVALIVAAAVVAVVGARADGEFEVLVAAHDLIP 65
Query 66 GTALTPGDVRLEKRSATTLPDGSQADLDAVVGSTLASPTRRGEVLTDVRLLGSRL-AEST 124
G + GD+ +T+P G+ +D G T+ R GE+LTD RLL SRL AE T
Sbjct 66 GQMVDAGDLTPRLVMGSTVPAGAISDAALATGRTVTGRVRTGEILTDTRLLSSRLPAELT 125
Query 125 AGPDARIVPLHLADSALVDLVRVGDVVDVLAAPVTDSPAALRLLATDAIVVLVSAQQKAQ 184
DAR+VP+ L+D A+ L+R GDVVDVL TDS +LA A+V + + Q +
Sbjct 126 GVDDARLVPVRLSDEAVTSLLRPGDVVDVL----TDSAD---VLARRAVVAMRTGQSSSG 178
Query 185 AADSDRV----VLVALPARLANTVAGAALGQTVTLTLH 218
S R VL+A+ A A+ VA A L ++ + LH
Sbjct 179 GIASGRNSVAPVLLAMDAAAAHRVAAAGLESSLAVVLH 216
>gi|331694666|ref|YP_004330905.1| SAF domain-containing protein [Pseudonocardia dioxanivorans CB1190]
gi|326949355|gb|AEA23052.1| SAF domain protein [Pseudonocardia dioxanivorans CB1190]
Length=224
Score = 88.6 bits (218), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 84/211 (40%), Positives = 103/211 (49%), Gaps = 5/211 (2%)
Query 9 SLVSRISAFLRPDWTRTVRARRFAAAGLVMLAGVAALRSNPEDDRSEVVVAAHDLRPGTA 68
+LV+R+ A W R V ARR A LV+ A V ALR D VVVA HDL GT
Sbjct 14 ALVARLPAT---RWRRAVLARRVIAGALVVTAVVLALRPA-ADPGVPVVVAVHDLPAGTT 69
Query 69 LTPGDVRLEKRSATTLPDGSQADLDAVVGSTLASPTRRGEVLTDVRLLGSRLAESTAG-P 127
L DV + +P G A V G LA P R GE LTD+RL+G LA G
Sbjct 70 LAAADVAVRSWPQGLVPGGVAAAPSDVTGRVLAGPARAGEPLTDLRLVGPALAVVATGRA 129
Query 128 DARIVPLHLADSALVDLVRVGDVVDVLAAPVTDSPAALRLLATDAIVVLVSAQQKAQAAD 187
DA VP+ LAD + L+ G +VDV+ T A + A VL + A
Sbjct 130 DAVSVPVRLADPGVAGLLTPGSLVDVVTPGATADEAVVLASAAAVTAVLPAENGPVAGAA 189
Query 188 SDRVVLVALPARLANTVAGAALGQTVTLTLH 218
R+VLVALP A +A A+L Q V +TL
Sbjct 190 KGRLVLVALPPAQATRLAAASLTQQVAITLR 220
>gi|326383759|ref|ZP_08205444.1| SAF domain-containing protein [Gordonia neofelifaecis NRRL B-59395]
gi|326197523|gb|EGD54712.1| SAF domain-containing protein [Gordonia neofelifaecis NRRL B-59395]
Length=182
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/185 (39%), Positives = 96/185 (52%), Gaps = 9/185 (4%)
Query 36 LVMLAGVAALRSNPEDDRSEVVVAAHDLRPGTALTPGDVRLEKRSATTLPDGSQADLDAV 95
LV+ A + + S+ D V+ AA DLRPGT LT D+ A T+P + D
Sbjct 5 LVIAATASVVYSHRRPDAPRVLTAAADLRPGTVLTADDLTSVPMPAATVPASALRDTGKA 64
Query 96 VGSTLASPTRRGEVLTDVRLLGSRLAESTAGPD-ARIVPLHLADSALVDLVRVGDVVDVL 154
VG L P RGE++T+ RLL SRLA G AR+VP+ AD ++ LVR GD VDVL
Sbjct 65 VGQRLTGPVTRGEIITETRLLTSRLAAQLTGSSTARLVPVRPADESVATLVRQGDTVDVL 124
Query 155 AAPVTDSPAALRLLATDAIVVLV-SAQQKAQAADSDRVVLVALPARLANTVAGAALGQTV 213
D+ AA +LA A+V SA + +L+A+ + A+ VA LG +
Sbjct 125 -----DADAA--VLARGAVVAATPSAVSNRGIGGASSPILLAMNEQSAHEVAATGLGMAL 177
Query 214 TLTLH 218
L LH
Sbjct 178 ALVLH 182
>gi|134097376|ref|YP_001103037.1| hypothetical protein SACE_0770 [Saccharopolyspora erythraea NRRL
2338]
gi|291009066|ref|ZP_06567039.1| hypothetical protein SeryN2_31485 [Saccharopolyspora erythraea
NRRL 2338]
gi|133909999|emb|CAM00111.1| hypothetical protein SACE_0770 [Saccharopolyspora erythraea NRRL
2338]
Length=183
Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 71/185 (39%), Positives = 96/185 (52%), Gaps = 7/185 (3%)
Query 36 LVMLAGVAAL--RSNPEDDRSEVVVAAHDLRPGTALTPGDVRLEKRSATTLPDGSQADLD 93
L LA V AL R P D V+VAA DL PG L P DV A P G +++D
Sbjct 2 LATLAAVMALQPRPGPASDGVPVLVAARDLAPGHVLEPDDVARRTMPAELAPGGVLSEVD 61
Query 94 AVVGSTLASPTRRGEVLTDVRLLG-SRLAESTAGPDARIVPLHLADSALVDLVRVGDVVD 152
G L + +R GE LTDVRL G ++ A +T P VP+ LAD + DL+ G VD
Sbjct 62 EATGRVLGTASRSGEPLTDVRLAGPAQTALTTGDPRHAAVPIRLADPDVADLLHPGRRVD 121
Query 153 VLAAPVTDSPAALRLLATDAIVVLVSAQQKAQAADSDRVVLVALPARLANTVAGAALGQT 212
++ ++ +LA A V+ V + D R+++V LP LA VA A+L Q+
Sbjct 122 IVTTATRSGNSS--VLAEQAPVIAV--RPTGDRHDQGRLIVVGLPEGLAPAVAAASLTQS 177
Query 213 VTLTL 217
VT+TL
Sbjct 178 VTVTL 182
>gi|333921219|ref|YP_004494800.1| hypothetical protein AS9A_3562 [Amycolicicoccus subflavus DQS3-9A1]
gi|333483440|gb|AEF42000.1| hypothetical protein AS9A_3562 [Amycolicicoccus subflavus DQS3-9A1]
Length=228
Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 77/218 (36%), Positives = 109/218 (50%), Gaps = 9/218 (4%)
Query 4 SSLNPSLVSRISAFLRPDWTRTVRARRFAAAGLVMLAGVAALRSNPEDDRSEVVVAAHDL 63
+ P L R++ + RR +A LV+ A VAAL D EVVV DL
Sbjct 15 NEFAPHLRDRVTECAERIRRHSALLRRISAGLLVIAAFVAALTPG-RDAGVEVVVVTRDL 73
Query 64 RPGTALTPGDVRLEKRSATTLPDGSQADLDAVVGSTLASPTRRGEVLTDVRLLGSRLAES 123
G+ LT D+ L ++ P + D VG +A+P R GEVLTD R+L L +
Sbjct 74 AAGSELTDDDIELTLVTSAQRPQSALVRADQAVGQRVATPVRAGEVLTDARVLTPPLIDE 133
Query 124 TAGP-DARIVPLHLADSALVDLVRVGDVVDVLAAPVTDSPAALR---LLATDAIVVLVSA 179
G +R VP+ LADS++ L+R GD VDVL+ S R ++ DA+V+ V+
Sbjct 134 ILGARQSRGVPVRLADSSVAGLLRAGDRVDVLSHLSGASLEPERTTSVVTEDAVVLFVTE 193
Query 180 QQKAQAADSDRVVLVALPARLANTVAGAALGQTVTLTL 217
+ D +V++ LP A VAGA+L VT+TL
Sbjct 194 ESPGH----DALVVLGLPPDEAVEVAGASLRGAVTVTL 227
>gi|296118260|ref|ZP_06836841.1| putative secreted protein [Corynebacterium ammoniagenes DSM 20306]
gi|295968818|gb|EFG82062.1| putative secreted protein [Corynebacterium ammoniagenes DSM 20306]
Length=223
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/213 (34%), Positives = 104/213 (49%), Gaps = 22/213 (10%)
Query 20 PDWTRTVRARRFAAAGLVMLAGVAAL---RSNPEDDRSEVVVAAHDLRPGTALTPGDVRL 76
P + R+ R LV A V AL R NPE ++V A D+ G LT D L
Sbjct 5 PGYARSQFIRHVIGVILVFAAVVVALSGLRENPE-----ILVFARDVDAGQELTAADTHL 59
Query 77 EKRSATTLPD-GSQADLDAVVGSTLASPTRRGEVLTDVRLLGSRLAESTAGPDARIVPLH 135
+ +PD G+ D D VVG + +P GE +T++RLLG L S P +VPL
Sbjct 60 VRVPHDVIPDEGALHDPDEVVGRIITAPAVAGEFVTELRLLGDELT-SQLVPGGHMVPLK 118
Query 136 LADSALVDLVRVGDVVDV-----------LAAPVTDSPAALRLLATDAIVVLVSAQQKAQ 184
LA+ L+ L+ GD V+V L +P+T + A R++AT A + +
Sbjct 119 LAEPDLISLLHHGDTVNVVSSQEDELSPGLFSPLTIAEGA-RVIATSADISAGAHASSNA 177
Query 185 AADSDRVVLVALPARLANTVAGAALGQTVTLTL 217
+ S +L+ALPA A VA A+L Q +T+ +
Sbjct 178 SVGSPATILLALPADQAQLVASASLSQPLTVVI 210
>gi|227501477|ref|ZP_03931526.1| SAF domain protein [Corynebacterium accolens ATCC 49725]
gi|227077502|gb|EEI15465.1| SAF domain protein [Corynebacterium accolens ATCC 49725]
Length=241
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 77/222 (35%), Positives = 116/222 (53%), Gaps = 22/222 (9%)
Query 13 RISAFLR----PDWTRTVRARRFAAAGLVMLAGVAALRSNPEDDRSEVVVAAHDLRPGTA 68
RIS F R P R V RR A L++ A +A+ E +V+V +HDL G
Sbjct 8 RISQFFRTLRTPGHRRGVLVRRAIALVLLIAALASAVSRAKE--LPQVLVFSHDLPAGAE 65
Query 69 LTPGDVRLEKRSATTLPDGSQADLDA-VVGSTLASPTRRGEVLTDVRLLGSRL------- 120
L+ DV LE+ ++++P + AD + + G + + +GEV+T RLLG L
Sbjct 66 LSAADVSLERLPSSSIPSSALADAPSDLAGRIITAAAGKGEVVTSQRLLGQELVSSLVAN 125
Query 121 ---AESTAGPDARIVPLHLADSALVDLVRVGDVVDVLAAP-VTDS-PAALRLLATDAIVV 175
A+S G R++P+ LAD ++ + GD VD++ A TDS PA R++A+ A VV
Sbjct 126 SGSADSKEGGSGRMIPVKLADPDIIPHLHHGDTVDIVTANDATDSEPATARVIASGARVV 185
Query 176 LVSAQQKAQAADSDRVVLVALPARLANTVAGAALGQTVTLTL 217
+ A+ S VL+ALP AN VA A+L Q +T+ +
Sbjct 186 ---STTTAEGEVSSATVLLALPNEHANDVAAASLNQPLTVVI 224
>gi|306835635|ref|ZP_07468644.1| conserved hypothetical protein [Corynebacterium accolens ATCC
49726]
gi|304568479|gb|EFM44035.1| conserved hypothetical protein [Corynebacterium accolens ATCC
49726]
Length=241
Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/176 (36%), Positives = 98/176 (56%), Gaps = 16/176 (9%)
Query 55 EVVVAAHDLRPGTALTPGDVRLEKRSATTLPDGSQADLDA-VVGSTLASPTRRGEVLTDV 113
+V+V +HDL G L+ DV LE+ ++++P + AD + + G + + +GEV+T
Sbjct 52 QVLVFSHDLPAGAELSAADVSLERLPSSSIPSSALADAPSDLAGRIITAAAGKGEVVTSQ 111
Query 114 RLLGSRL----------AESTAGPDARIVPLHLADSALVDLVRVGDVVDVL-AAPVTDS- 161
RLLG L A+S G R++P+ LAD ++ + GD VD++ A+ TDS
Sbjct 112 RLLGQELVSSLVTESGSADSKEGGSGRMIPVKLADPDIIPHLHHGDTVDIVTASDATDSE 171
Query 162 PAALRLLATDAIVVLVSAQQKAQAADSDRVVLVALPARLANTVAGAALGQTVTLTL 217
PA R++A+ A VV + A+ S VL+ALP AN VA A+L Q +T+ +
Sbjct 172 PATARVIASGARVV---STTTAEGEVSSATVLLALPNEHANDVAAASLNQPLTVVI 224
>gi|300790122|ref|YP_003770413.1| hypothetical protein AMED_8314 [Amycolatopsis mediterranei U32]
gi|299799636|gb|ADJ50011.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
gi|340531802|gb|AEK47007.1| hypothetical protein RAM_42700 [Amycolatopsis mediterranei S699]
Length=205
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 81/195 (42%), Positives = 103/195 (53%), Gaps = 10/195 (5%)
Query 24 RTVRARRFAAAGLVMLAGVAALRSNPEDDR-SEVVVAAHDLRPGTALTPGDVRLEKRSAT 82
RT RR+ A GL++L V + +P R + V+AAHDL G L DVRL S
Sbjct 19 RTRLIRRWLAVGLLVLGAVFLI--HPGSARGAPTVLAAHDLPSGATLGAADVRLADLSDE 76
Query 83 TLPDGSQADLDAVVGSTLASPTRRGEVLTDVRLLGSRLAESTAGPDARIVPLHLADSALV 142
P G + LDAV G LA R GE LTDVRL + A P VP+ LAD A+
Sbjct 77 ARPTGVLSTLDAVDGRLLAGAVRAGEPLTDVRL---ATVPAPADPGTATVPVRLADVAVA 133
Query 143 DLVRVGDVVDVLAAPVTDSPAALRLLATDAIVVLVSAQQKAQAADSDRVVLVALPARLAN 202
L+R G VDV+AAP +PA+ +LA A VV V Q+ A +VL+ LP A
Sbjct 134 ALLRPGQRVDVVAAPEPAAPAS--VLAAGATVVTVGHQEPATLKGP--LVLLRLPEAAAT 189
Query 203 TVAGAALGQTVTLTL 217
VA +L + VT+TL
Sbjct 190 RVAAISLERPVTVTL 204
>gi|302530357|ref|ZP_07282699.1| predicted protein [Streptomyces sp. AA4]
gi|302439252|gb|EFL11068.1| predicted protein [Streptomyces sp. AA4]
Length=216
Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 63/170 (38%), Positives = 92/170 (55%), Gaps = 8/170 (4%)
Query 54 SEVVVAAHDLRPGTALTPGDVRLEKRSATTLPDGSQADLDAVVGSTLASPTRRGEVLTDV 113
+ VV+A DL G+ L DVR + P G+ + +DA VG L+ R GE +TDV
Sbjct 50 TSTVVSARDLPAGSVLRAADVRTVALPDSLRPSGALSAIDAAVGRLLSGAARAGEPITDV 109
Query 114 RLLGSRLAESTAGPDARIVPLHLADSALVDLVRVGDVVDVLAAPVTDSPAALRLLATDAI 173
RLLG+ L T PDA V + LAD+A+ +L++ G VDV+A D+ + +LA A
Sbjct 110 RLLGNNL-PVTGEPDAVTVAVRLADAAVAELLQPGQRVDVVAG--ADTTNSASVLARGAS 166
Query 174 VVLV-----SAQQKAQAADSDRVVLVALPARLANTVAGAALGQTVTLTLH 218
VV V + + +VL+ALP +A VA ++L + VT+TL
Sbjct 167 VVTVRRSDDAGNRTLGPPQKGPLVLLALPREVATQVAASSLERPVTVTLR 216
>gi|119715033|ref|YP_921998.1| SAF domain-containing protein [Nocardioides sp. JS614]
gi|119535694|gb|ABL80311.1| SAF domain [Nocardioides sp. JS614]
Length=211
Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/98 (47%), Positives = 62/98 (64%), Gaps = 2/98 (2%)
Query 59 AAHDLRPGTALTPGDVRLEKRSATTLPDGSQADLDAVVGSTLASPTRRGEVLTDVRLLGS 118
AA DL GT L PGD+R + ++P G+ D VG TLA+P R GE +TDVR++G
Sbjct 53 AARDLTAGTVLAPGDLRAVGFAPDSVPAGASDDAIDAVGRTLAAPLRAGEPVTDVRVVGP 112
Query 119 RLAESTAGPDARIVPLHLADSALVDLVRVGDVVDVLAA 156
L + G A VP+ L D+ +VDL+RVGD VD++AA
Sbjct 113 ALTDGYPGLTA--VPVRLPDAGMVDLLRVGDRVDLVAA 148
>gi|213966094|ref|ZP_03394282.1| SAF domain protein [Corynebacterium amycolatum SK46]
gi|213951292|gb|EEB62686.1| SAF domain protein [Corynebacterium amycolatum SK46]
Length=205
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/197 (33%), Positives = 98/197 (50%), Gaps = 14/197 (7%)
Query 24 RTVRARRFAAAGLVMLA-GVAALRS-NPEDDRSEVVVAAHDLRPGTALTPGDVRLEKRSA 81
R RR A + + A G+AA+ S P + VV++A + G ++ DV +
Sbjct 17 RPTTIRRIVALTVFLCAVGLAAVESLTPRSGHTRVVISAKSIAAGASVAEQDVAFKDIPR 76
Query 82 TTLPDGSQADLDAVVGSTLASPTRRGEVLTDVRLLGSRLAESTAG-PDARIVPLHLADSA 140
+P G+ D+ AV G TLA+ GE+ T+ R++G LA+S G +++I+ + L DS
Sbjct 77 DLVPGGAVTDIAAVRGRTLATGMSPGEIFTEQRMVGPSLAKSLTGTSESKIIAITLTDSG 136
Query 141 LVDLVRVGDVVDVLAAPVTDSPAALRLLATDAIVVLVSAQQKAQAADSDRVVLVALPARL 200
+V + GD VD+++ D +A A VV + D VVLVALPA
Sbjct 137 IVSALHTGDSVDIVS--TADERGMAAPIAHGARVVNIV---------DDEVVLVALPAGA 185
Query 201 ANTVAGAALGQTVTLTL 217
A VA +L +TL L
Sbjct 186 AEVVAATSLASPLTLLL 202
>gi|227504186|ref|ZP_03934235.1| SAF domain protein [Corynebacterium striatum ATCC 6940]
gi|227199230|gb|EEI79278.1| SAF domain protein [Corynebacterium striatum ATCC 6940]
Length=226
Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 65/213 (31%), Positives = 109/213 (52%), Gaps = 21/213 (9%)
Query 20 PDWTRTVRARRFAAAGLVMLAGVAALRSNPEDDRSEVVVAAHDLRPGTALTPGDVRLEKR 79
P R++ RR AA L++ AG++AL + E + VV A D+ G+ L D+ L
Sbjct 13 PGHRRSLLVRRVLAAVLIIGAGLSALHARRE--LPQAVVFARDVPAGSTLQAEDLTLAPV 70
Query 80 SATTLPDGS-QADLDAVVGSTLASPTRRGEVLTDVRLLGSRLAES--------TAGPDAR 130
+ LPD + DL+ + G + + GE++TD RLL L ++ T+G ++
Sbjct 71 PSHILPDSAVDTDLEKLEGRVVVAAAASGELVTDARLLSPELVDNLVNNSTLNTSGEESH 130
Query 131 IVPLHLADSALVDLVRVGDVVDVLAAPV------TDSPAALRLLATDAIVVLVSAQQKAQ 184
++PL LA+ ++ + GD V+V+A T SPA + A +V S++
Sbjct 131 MIPLKLAEPDILPHLHHGDTVNVIAGNSNSDLIGTTSPAGSVIAAGGRVVATTSSRDGED 190
Query 185 AADSDRVVLVALPARLANTVAGAALGQTVTLTL 217
A+ +L+ALPA A+ VA A+L Q +T+ +
Sbjct 191 AS----TLLLALPASQADAVASASLSQPLTVVI 219
>gi|62389769|ref|YP_225171.1| hypothetical protein cg1002 [Corynebacterium glutamicum ATCC
13032]
gi|21323646|dbj|BAB98273.1| Hypothetical protein [Corynebacterium glutamicum ATCC 13032]
gi|41325104|emb|CAF19585.1| putative secreted protein [Corynebacterium glutamicum ATCC 13032]
Length=217
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/203 (30%), Positives = 94/203 (47%), Gaps = 20/203 (9%)
Query 17 FLRPDWTRTVRARRFAAAGLVMLAGVAALRSNPEDDRSEVVVAAHDLRPGTALTPGDVRL 76
F P W RT+ RR A L+ +AG+ S + D + VV+ ++ GT + D+ L
Sbjct 7 FTTPSWHRTLVLRRIIAFILIGIAGLLMAHSWLKKDPTAVVIV-QEIPAGTKVEASDLGL 65
Query 77 EKRSATTLPDGSQADLDAVVGSTLASPTRRGEVLTDVRLLGSRLAESTAG--------PD 128
+ + LP S +D VVG AS GE+ T R +G+ L S A +
Sbjct 66 QAIPTSLLPSTSYDSIDDVVGLVAASTLSSGEIATKPRFVGTELINSIATNVTDSSLVEE 125
Query 129 ARIVPLHLADSALVDLVRVGDVVDVLAA-PVTDSPAALRLLATDAIVVLVSAQQKAQAAD 187
+VPL LA+ +++ L++ GD + V++ P T P +A V+L +
Sbjct 126 INMVPLSLAEPSVIPLLQHGDTISVVSQDPDTGLPEN---IAAGGTVILAGGTDPS---- 178
Query 188 SDRVVLVALPARLANTVAGAALG 210
+L+ALP +A VA +L
Sbjct 179 ---TILIALPQSIAEKVAAQSLN 198
>gi|326333348|ref|ZP_08199595.1| putative Flp pilus assembly protein CpaB [Nocardioidaceae bacterium
Broad-1]
gi|325948992|gb|EGD41085.1| putative Flp pilus assembly protein CpaB [Nocardioidaceae bacterium
Broad-1]
Length=219
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/227 (34%), Positives = 109/227 (49%), Gaps = 31/227 (13%)
Query 10 LVSRISAFLRPDWTRTVRARRFAAAGLVMLA---GVAALRSNPEDDRSEVVVAAHDLRPG 66
+++RI++F R + RR A L A G +A R +P D S + VA+ DL G
Sbjct 1 MLTRITSFTRRVRRGVLAHRRLLAFLLTASAVAIGFSATRPDPPD-TSTMAVASRDLPVG 59
Query 67 TALTPGDVRLEKRSATTLPDGSQADL-DAVVGSTLASPTRRGEVLTDVRLLGSRLAESTA 125
T LT D+ T P ADL +A +G LA+P R+GE +TDVRL+G L E
Sbjct 60 TVLTAADLT----DIETDPGSVPADLAEAPLGERLAAPLRQGEPVTDVRLVGPELTE--G 113
Query 126 GPDARIVPLHLADSALVDLVRVGDVVDVLAA-PVTDSPAALRLLATDAIVVLV------- 177
PD VP+ L D+ + L+ VGD VD+ A P T A + TD +++ +
Sbjct 114 HPDLVAVPVRLPDAEMAGLLHVGDTVDLYATDPAT---AETARVTTDTLILSLPQATEPN 170
Query 178 ----SAQQKAQA-----ADSDRVVLVALPARLANTVAGAALGQTVTL 215
SAQ K + + R+V+V + A V A +G +T
Sbjct 171 RDDSSAQGKTEGFGVTNTSAGRLVIVGVAASSVEDVTSAGVGGYLTF 217
>gi|257057235|ref|YP_003135067.1| SAF domain-containing protein [Saccharomonospora viridis DSM
43017]
gi|256587107|gb|ACU98240.1| SAF domain-containing protein [Saccharomonospora viridis DSM
43017]
Length=221
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/173 (36%), Positives = 86/173 (50%), Gaps = 11/173 (6%)
Query 51 DDRSEVVVAAHDLRPGTALTPGDVRLEKRSATTLPDGSQADLDAVVGSTLASPTRRGEVL 110
+ R V+VAA L G+ L+ DVR+ + A PDG+ D V L R GE L
Sbjct 55 EPRVPVLVAARTLPLGSTLSEDDVRVAEVPAELRPDGALVTPDQAVDRRLVGAAREGEPL 114
Query 111 TDVRLLGSRLAESTAGPDARIVPLHLADSALVDLVRVGDVVDVLAAPVTDSPAALRLLAT 170
TD+R L +R P + VPL L D+ + L+R G VDV+ + R+LA
Sbjct 115 TDLRFLDAR----NGPPGSTTVPLRLTDAGMTRLLRSGTRVDVVTP--GEGVRQARVLAE 168
Query 171 DAIVVLVSAQQKAQ-----AADSDRVVLVALPARLANTVAGAALGQTVTLTLH 218
+A VV V + + A + +VLV++P A VA AALG VT+TL
Sbjct 169 NATVVSVVTPEPDRDDSPLARQNTPLVLVSVPDEQAPHVAAAALGNPVTVTLR 221
>gi|145295050|ref|YP_001137871.1| hypothetical protein cgR_0993 [Corynebacterium glutamicum R]
gi|140844970|dbj|BAF53969.1| hypothetical protein [Corynebacterium glutamicum R]
Length=217
Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/202 (30%), Positives = 95/202 (48%), Gaps = 20/202 (9%)
Query 17 FLRPDWTRTVRARRFAAAGLVMLAGVAALRSNPEDDRSEVVVAAHDLRPGTALTPGDVRL 76
F P W RT+ RR A L+ +AG+ S + D + VV+ ++ GT + D+ L
Sbjct 7 FTTPSWRRTLVLRRIIAFILIGIAGLLMAHSWLKKDPTAVVIV-QEIPAGTKVESSDLGL 65
Query 77 EKRSATTLPDGSQADLDAVVGSTLASPTRRGEVLTDVRLLGSRLAES-----TAG---PD 128
+ + LP S +D VVG AS GE+ T R +G+ L S T G +
Sbjct 66 QAIPTSLLPSTSYDSIDDVVGLVAASTLSSGEIATKPRFVGTELINSIVTNVTDGSLVEE 125
Query 129 ARIVPLHLADSALVDLVRVGDVVDVLAA-PVTDSPAALRLLATDAIVVLVSAQQKAQAAD 187
+VPL LA+ +++ L++ GD + V++ P T P +A V+L +
Sbjct 126 INMVPLSLAEPSVIPLLQHGDTISVVSQDPDTGLPEN---IAAGGTVILAGGTNPS---- 178
Query 188 SDRVVLVALPARLANTVAGAAL 209
+L+ALP +A VA +L
Sbjct 179 ---TILIALPQSIAEKVAAQSL 197
Lambda K H
0.317 0.130 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 267044465184
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40