BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0991c Length=110 Score E Sequences producing significant alignments: (Bits) Value gi|15840416|ref|NP_335453.1| hypothetical protein MT1020 [Mycoba... 213 8e-54 gi|15608131|ref|NP_215506.1| putative serine rich protein [Mycob... 212 2e-53 gi|289749519|ref|ZP_06508897.1| conserved serine rich protein [M... 138 3e-31 gi|4455708|emb|CAB36694.1| hypothetical protein MLCB373.32c [Myc... 126 8e-28 gi|15826992|ref|NP_301255.1| hypothetical protein ML0180 [Mycoba... 126 1e-27 gi|254823441|ref|ZP_05228442.1| putative regulatory protein, Fmd... 121 4e-26 gi|118619766|ref|YP_908098.1| putative serine rich protein [Myco... 120 1e-25 gi|333989579|ref|YP_004522193.1| hypothetical protein JDM601_093... 119 1e-25 gi|118467153|ref|YP_880353.1| regulatory protein, FmdB family pr... 119 1e-25 gi|41407020|ref|NP_959856.1| hypothetical protein MAP0922c [Myco... 119 1e-25 gi|342860585|ref|ZP_08717236.1| regulatory protein, FmdB family ... 119 2e-25 gi|183984493|ref|YP_001852784.1| putative serine rich protein [M... 118 3e-25 gi|240169342|ref|ZP_04748001.1| hypothetical protein MkanA1_0851... 114 5e-24 gi|108801256|ref|YP_641453.1| FmdB transcriptional regulator [My... 113 9e-24 gi|54026929|ref|YP_121171.1| hypothetical protein nfa49550 [Noca... 113 1e-23 gi|126437235|ref|YP_001072926.1| FmdB family regulatory protein ... 111 3e-23 gi|120405785|ref|YP_955614.1| FmdB family regulatory protein [My... 110 6e-23 gi|145222485|ref|YP_001133163.1| FmdB family regulatory protein ... 110 9e-23 gi|226307878|ref|YP_002767838.1| hypothetical protein RER_43910 ... 107 9e-22 gi|169628179|ref|YP_001701828.1| hypothetical protein MAB_1084c ... 106 1e-21 gi|118472246|ref|YP_889717.1| type I antifreeze protein [Mycobac... 106 1e-21 gi|262201378|ref|YP_003272586.1| FmdB family transcriptional reg... 105 2e-21 gi|111022596|ref|YP_705568.1| hypothetical protein RHA1_ro05630 ... 105 2e-21 gi|317506823|ref|ZP_07964597.1| FmdB transcriptional regulator [... 105 2e-21 gi|312138619|ref|YP_004005955.1| hypothetical protein REQ_11720 ... 105 2e-21 gi|326383762|ref|ZP_08205447.1| regulatory protein, FmdB family ... 105 3e-21 gi|226365104|ref|YP_002782887.1| hypothetical protein ROP_56950 ... 104 3e-21 gi|269217389|ref|ZP_06161243.1| regulatory protein, FmdB family ... 102 2e-20 gi|297563017|ref|YP_003681991.1| FmdB family regulatory protein ... 101 4e-20 gi|296140953|ref|YP_003648196.1| FmdB family regulatory protein ... 100 5e-20 gi|291009064|ref|ZP_06567037.1| hypothetical protein SeryN2_3147... 99.4 2e-19 gi|296393687|ref|YP_003658571.1| FmdB family regulatory protein ... 99.4 2e-19 gi|145593300|ref|YP_001157597.1| FmdB family regulatory protein ... 98.6 2e-19 gi|258654755|ref|YP_003203911.1| FmdB family regulatory protein ... 98.6 2e-19 gi|333921216|ref|YP_004494797.1| hypothetical protein AS9A_3559 ... 98.6 3e-19 gi|119715034|ref|YP_921999.1| FmdB family regulatory protein [No... 97.8 5e-19 gi|315501757|ref|YP_004080644.1| regulatory protein, fmdb family... 97.8 5e-19 gi|336319683|ref|YP_004599651.1| FmdB family regulatory protein ... 97.4 5e-19 gi|300790121|ref|YP_003770412.1| hypothetical protein AMED_8313 ... 96.7 1e-18 gi|284033646|ref|YP_003383577.1| regulatory protein, FmdB family... 96.3 1e-18 gi|117927371|ref|YP_871922.1| FmdB family regulatory protein [Ac... 95.1 3e-18 gi|256374775|ref|YP_003098435.1| FmdB family regulatory protein ... 94.7 4e-18 gi|336120234|ref|YP_004575013.1| hypothetical protein MLP_45960 ... 94.7 4e-18 gi|325001319|ref|ZP_08122431.1| type I antifreeze protein [Pseud... 94.4 5e-18 gi|148273632|ref|YP_001223193.1| hypothetical protein CMM_2448 [... 94.0 7e-18 gi|238062535|ref|ZP_04607244.1| fmdB family transcriptional regu... 93.6 8e-18 gi|271969841|ref|YP_003344037.1| FmdB family regulatory protein ... 93.6 9e-18 gi|331694667|ref|YP_004330906.1| FmdB family regulatory protein ... 93.2 1e-17 gi|302519829|ref|ZP_07272171.1| FmdB family regulatory protein [... 92.8 1e-17 gi|220913318|ref|YP_002488627.1| FmdB family regulatory protein ... 92.0 2e-17 >gi|15840416|ref|NP_335453.1| hypothetical protein MT1020 [Mycobacterium tuberculosis CDC1551] gi|167968057|ref|ZP_02550334.1| hypothetical protein MtubH3_08488 [Mycobacterium tuberculosis H37Ra] gi|253799981|ref|YP_003032982.1| hypothetical protein TBMG_02998 [Mycobacterium tuberculosis KZN 1435] 14 more sequence titles Length=117 Score = 213 bits (542), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 110/110 (100%), Positives = 110/110 (100%), Gaps = 0/110 (0%) Query 1 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSRES 60 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSRES Sbjct 8 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSRES 67 Query 61 GKKSKSQTNGSSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV 110 GKKSKSQTNGSSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV Sbjct 68 GKKSKSQTNGSSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV 117 >gi|15608131|ref|NP_215506.1| putative serine rich protein [Mycobacterium tuberculosis H37Rv] gi|31792182|ref|NP_854675.1| putative serine rich protein [Mycobacterium bovis AF2122/97] gi|121636918|ref|YP_977141.1| hypothetical protein BCG_1046c [Mycobacterium bovis BCG str. Pasteur 1173P2] 61 more sequence titles Length=110 Score = 212 bits (539), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 109/110 (99%), Positives = 110/110 (100%), Gaps = 0/110 (0%) Query 1 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSRES 60 +PTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSRES Sbjct 1 MPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSRES 60 Query 61 GKKSKSQTNGSSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV 110 GKKSKSQTNGSSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV Sbjct 61 GKKSKSQTNGSSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV 110 >gi|289749519|ref|ZP_06508897.1| conserved serine rich protein [Mycobacterium tuberculosis T92] gi|289690106|gb|EFD57535.1| conserved serine rich protein [Mycobacterium tuberculosis T92] Length=89 Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 63/66 (96%), Positives = 65/66 (99%), Gaps = 0/66 (0%) Query 1 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSRES 60 +PTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSRES Sbjct 1 MPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSRES 60 Query 61 GKKSKS 66 GKKS+ Sbjct 61 GKKSQE 66 >gi|4455708|emb|CAB36694.1| hypothetical protein MLCB373.32c [Mycobacterium leprae] Length=120 Score = 126 bits (317), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 56/62 (91%), Positives = 61/62 (99%), Gaps = 0/62 (0%) Query 1 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSRES 60 VPTYSYECT+C NRFDVVQAFTDDALTTCE+CSGRLRKLFN+VGVVFKG+GFYRTDSRES Sbjct 22 VPTYSYECTECTNRFDVVQAFTDDALTTCEKCSGRLRKLFNSVGVVFKGSGFYRTDSRES 81 Query 61 GK 62 G+ Sbjct 82 GE 83 >gi|15826992|ref|NP_301255.1| hypothetical protein ML0180 [Mycobacterium leprae TN] gi|221229470|ref|YP_002502886.1| hypothetical protein MLBr_00180 [Mycobacterium leprae Br4923] gi|13092539|emb|CAC29688.1| conserved hypothetical protein. Ser-rich C-terminus [Mycobacterium leprae] gi|219932577|emb|CAR70273.1| conserved hypothetical protein. Ser-rich C-terminus [Mycobacterium leprae Br4923] Length=99 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 55/62 (89%), Positives = 61/62 (99%), Gaps = 0/62 (0%) Query 1 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSRES 60 +PTYSYECT+C NRFDVVQAFTDDALTTCE+CSGRLRKLFN+VGVVFKG+GFYRTDSRES Sbjct 1 MPTYSYECTECTNRFDVVQAFTDDALTTCEKCSGRLRKLFNSVGVVFKGSGFYRTDSRES 60 Query 61 GK 62 G+ Sbjct 61 GE 62 >gi|254823441|ref|ZP_05228442.1| putative regulatory protein, FmdB family protein [Mycobacterium intracellulare ATCC 13950] Length=112 Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 53/63 (85%), Positives = 61/63 (97%), Gaps = 0/63 (0%) Query 1 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSRES 60 +PTYSY+CT+C +RFD+VQAFTDDALTTC+RCSGRLRK FN+VGVVFKG+GFYRTDSRES Sbjct 1 MPTYSYQCTECDDRFDIVQAFTDDALTTCKRCSGRLRKRFNSVGVVFKGSGFYRTDSRES 60 Query 61 GKK 63 GKK Sbjct 61 GKK 63 >gi|118619766|ref|YP_908098.1| putative serine rich protein [Mycobacterium ulcerans Agy99] gi|118571876|gb|ABL06627.1| conserved hypothetical serine rich protein [Mycobacterium ulcerans Agy99] Length=111 Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 51/60 (85%), Positives = 59/60 (99%), Gaps = 0/60 (0%) Query 1 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSRES 60 +PTYSYECT+C+NRFDVVQ+FTDD+LTTCE CSGRLRKLF+AVGVVFKG+GFYRTDSRE+ Sbjct 1 MPTYSYECTECSNRFDVVQSFTDDSLTTCEECSGRLRKLFHAVGVVFKGSGFYRTDSREA 60 >gi|333989579|ref|YP_004522193.1| hypothetical protein JDM601_0939 [Mycobacterium sp. JDM601] gi|333485547|gb|AEF34939.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=120 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 52/64 (82%), Positives = 59/64 (93%), Gaps = 0/64 (0%) Query 1 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSRES 60 +PTYSY CT+C+NRFDVVQAFTDDALTTCE CSGRLRK+F VGVVFKG+GFYRTDSR++ Sbjct 1 MPTYSYACTECSNRFDVVQAFTDDALTTCEECSGRLRKIFGKVGVVFKGSGFYRTDSRDA 60 Query 61 GKKS 64 GK S Sbjct 61 GKSS 64 >gi|118467153|ref|YP_880353.1| regulatory protein, FmdB family protein [Mycobacterium avium 104] gi|254773980|ref|ZP_05215496.1| putative regulatory protein, FmdB family protein [Mycobacterium avium subsp. avium ATCC 25291] gi|118168440|gb|ABK69337.1| putative regulatory protein, FmdB family protein [Mycobacterium avium 104] gi|336461404|gb|EGO40275.1| putative regulatory protein, FmdB family [Mycobacterium avium subsp. paratuberculosis S397] Length=108 Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 52/64 (82%), Positives = 60/64 (94%), Gaps = 0/64 (0%) Query 1 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSRES 60 +PTYSY+CT+C +RFD+VQAFTDDALTTC+ CSGRLRK FN+VGVVFKG+GFYRTDSRES Sbjct 1 MPTYSYQCTECDDRFDIVQAFTDDALTTCKHCSGRLRKRFNSVGVVFKGSGFYRTDSRES 60 Query 61 GKKS 64 GKK Sbjct 61 GKKP 64 >gi|41407020|ref|NP_959856.1| hypothetical protein MAP0922c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395371|gb|AAS03239.1| hypothetical protein MAP_0922c [Mycobacterium avium subsp. paratuberculosis K-10] Length=108 Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 52/64 (82%), Positives = 60/64 (94%), Gaps = 0/64 (0%) Query 1 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSRES 60 +PTYSY+CT+C +RFD+VQAFTDDALTTC+ CSGRLRK FN+VGVVFKG+GFYRTDSRES Sbjct 1 MPTYSYQCTECDDRFDIVQAFTDDALTTCKHCSGRLRKRFNSVGVVFKGSGFYRTDSRES 60 Query 61 GKKS 64 GKK Sbjct 61 GKKP 64 >gi|342860585|ref|ZP_08717236.1| regulatory protein, FmdB family protein [Mycobacterium colombiense CECT 3035] gi|342132240|gb|EGT85481.1| regulatory protein, FmdB family protein [Mycobacterium colombiense CECT 3035] Length=116 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 52/62 (84%), Positives = 60/62 (97%), Gaps = 0/62 (0%) Query 1 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSRES 60 +PTYSY+CT+C +RFD+VQAFTDDALTTC+RCSGRLRK FN+VGVVFKG+GFYRTDSRES Sbjct 1 MPTYSYQCTECDDRFDIVQAFTDDALTTCKRCSGRLRKRFNSVGVVFKGSGFYRTDSRES 60 Query 61 GK 62 GK Sbjct 61 GK 62 >gi|183984493|ref|YP_001852784.1| putative serine rich protein [Mycobacterium marinum M] gi|183177819|gb|ACC42929.1| conserved hypothetical serine rich protein [Mycobacterium marinum M] Length=111 Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 51/60 (85%), Positives = 59/60 (99%), Gaps = 0/60 (0%) Query 1 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSRES 60 +PTYSYECT+C+NRFDVVQ+FTDD+LTTCE CSGRLRKLF+AVGVVFKG+GFYRTDSRE+ Sbjct 1 MPTYSYECTECSNRFDVVQSFTDDSLTTCEECSGRLRKLFHAVGVVFKGSGFYRTDSREA 60 >gi|240169342|ref|ZP_04748001.1| hypothetical protein MkanA1_08516 [Mycobacterium kansasii ATCC 12478] Length=103 Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 50/60 (84%), Positives = 58/60 (97%), Gaps = 0/60 (0%) Query 1 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSRES 60 +PTYSY CT+CA+RFDVVQAFTD+ALTTC +CSGRLRKLFN+VGVVFKG+GFYRTDSRE+ Sbjct 1 MPTYSYACTECADRFDVVQAFTDEALTTCGKCSGRLRKLFNSVGVVFKGSGFYRTDSRET 60 >gi|108801256|ref|YP_641453.1| FmdB transcriptional regulator [Mycobacterium sp. MCS] gi|119870407|ref|YP_940359.1| FmdB family regulatory protein [Mycobacterium sp. KMS] gi|108771675|gb|ABG10397.1| Putative regulatory protein, FmdB [Mycobacterium sp. MCS] gi|119696496|gb|ABL93569.1| putative regulatory protein, FmdB family [Mycobacterium sp. KMS] Length=110 Score = 113 bits (283), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 53/70 (76%), Positives = 60/70 (86%), Gaps = 3/70 (4%) Query 1 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSRES 60 +PTYSY CT+CANRFD VQAF+DDALT C +CSGRLRKLF VGVVFKG+GFYRTDSRES Sbjct 1 MPTYSYACTECANRFDAVQAFSDDALTECPQCSGRLRKLFGKVGVVFKGSGFYRTDSRES 60 Query 61 GKKSKSQTNG 70 +K+ TNG Sbjct 61 ---TKTSTNG 67 >gi|54026929|ref|YP_121171.1| hypothetical protein nfa49550 [Nocardia farcinica IFM 10152] gi|54018437|dbj|BAD59807.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=98 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 46/58 (80%), Positives = 55/58 (95%), Gaps = 0/58 (0%) Query 1 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSR 58 +PTYSY CTQC NRFD+VQ+F+DDALT CE+CSG+LRKLFN+VG+VFKG+GFYRTDSR Sbjct 1 MPTYSYACTQCDNRFDIVQSFSDDALTVCEKCSGKLRKLFNSVGIVFKGSGFYRTDSR 58 >gi|126437235|ref|YP_001072926.1| FmdB family regulatory protein [Mycobacterium sp. JLS] gi|126237035|gb|ABO00436.1| putative regulatory protein, FmdB family [Mycobacterium sp. JLS] Length=113 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 50/62 (81%), Positives = 55/62 (89%), Gaps = 0/62 (0%) Query 1 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSRES 60 +PTYSY CT+CANRFD VQAF+DDALT C +CSGRLRKLF VGVVFKG+GFYRTDSRES Sbjct 1 MPTYSYACTECANRFDAVQAFSDDALTECPQCSGRLRKLFGKVGVVFKGSGFYRTDSRES 60 Query 61 GK 62 K Sbjct 61 TK 62 >gi|120405785|ref|YP_955614.1| FmdB family regulatory protein [Mycobacterium vanbaalenii PYR-1] gi|119958603|gb|ABM15608.1| putative regulatory protein, FmdB family [Mycobacterium vanbaalenii PYR-1] Length=115 Score = 110 bits (276), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 49/64 (77%), Positives = 56/64 (88%), Gaps = 0/64 (0%) Query 1 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSRES 60 +PTYSY CT C+N+FDVVQAFTDD+LT C +C GRLRK+F VGVVFKG+GFYRTDSRES Sbjct 1 MPTYSYACTDCSNKFDVVQAFTDDSLTDCPQCDGRLRKVFGKVGVVFKGSGFYRTDSRES 60 Query 61 GKKS 64 GK S Sbjct 61 GKSS 64 >gi|145222485|ref|YP_001133163.1| FmdB family regulatory protein [Mycobacterium gilvum PYR-GCK] gi|315442931|ref|YP_004075810.1| regulatory protein, FmdB family [Mycobacterium sp. Spyr1] gi|145214971|gb|ABP44375.1| putative regulatory protein, FmdB family [Mycobacterium gilvum PYR-GCK] gi|315261234|gb|ADT97975.1| putative regulatory protein, FmdB family [Mycobacterium sp. Spyr1] Length=117 Score = 110 bits (274), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 47/62 (76%), Positives = 56/62 (91%), Gaps = 0/62 (0%) Query 1 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSRES 60 +PTYSY CT+C+N+FDVVQAFTDD+LT C +C GRLRK+F VGVVFKG+GFYRTDSRE+ Sbjct 1 MPTYSYACTECSNKFDVVQAFTDDSLTECPQCDGRLRKIFGKVGVVFKGSGFYRTDSREA 60 Query 61 GK 62 GK Sbjct 61 GK 62 >gi|226307878|ref|YP_002767838.1| hypothetical protein RER_43910 [Rhodococcus erythropolis PR4] gi|229495078|ref|ZP_04388824.1| putative regulatory protein [Rhodococcus erythropolis SK121] gi|226186995|dbj|BAH35099.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] gi|229318009|gb|EEN83884.1| putative regulatory protein [Rhodococcus erythropolis SK121] Length=103 Score = 107 bits (266), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 42/58 (73%), Positives = 53/58 (92%), Gaps = 0/58 (0%) Query 1 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSR 58 +PTYSY CT+C NRFD+VQ+F++D+LT C CSG+LRKLFN+VG+VFKG+GFYRTDSR Sbjct 1 MPTYSYACTECDNRFDIVQSFSEDSLTVCPACSGKLRKLFNSVGIVFKGSGFYRTDSR 58 >gi|169628179|ref|YP_001701828.1| hypothetical protein MAB_1084c [Mycobacterium abscessus ATCC 19977] gi|169240146|emb|CAM61174.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=108 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 42/58 (73%), Positives = 53/58 (92%), Gaps = 0/58 (0%) Query 1 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSR 58 +PTYSY C C ++FD+VQ+FTDDALT C++CSG+LRKLFN+VG+VFKG+GFYRTDSR Sbjct 1 MPTYSYACADCGDKFDIVQSFTDDALTVCQKCSGKLRKLFNSVGIVFKGSGFYRTDSR 58 >gi|118472246|ref|YP_889717.1| type I antifreeze protein [Mycobacterium smegmatis str. MC2 155] gi|118173533|gb|ABK74429.1| type I antifreeze protein [Mycobacterium smegmatis str. MC2 155] Length=106 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 46/58 (80%), Positives = 53/58 (92%), Gaps = 0/58 (0%) Query 1 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSR 58 +PTYSY CT+C NRFD VQAF+DDALTTC +CSGRLRKLF +VGVVFKG+GFYRTD+R Sbjct 1 MPTYSYACTECDNRFDAVQAFSDDALTTCPKCSGRLRKLFGSVGVVFKGSGFYRTDNR 58 >gi|262201378|ref|YP_003272586.1| FmdB family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262084725|gb|ACY20693.1| regulatory protein, FmdB family [Gordonia bronchialis DSM 43247] Length=126 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 43/59 (73%), Positives = 53/59 (90%), Gaps = 0/59 (0%) Query 1 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSRE 59 VPTYSY CT+C N+FD+VQ+F+DD+LT C +C+GRLRKLFN VG+VFKG+GFYRTDSR Sbjct 20 VPTYSYACTECDNKFDIVQSFSDDSLTECPQCTGRLRKLFNTVGIVFKGSGFYRTDSRP 78 >gi|111022596|ref|YP_705568.1| hypothetical protein RHA1_ro05630 [Rhodococcus jostii RHA1] gi|110822126|gb|ABG97410.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=102 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 43/58 (75%), Positives = 52/58 (90%), Gaps = 0/58 (0%) Query 1 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSR 58 +PTYSY CT C NRFD+VQ+F+DD+LT C CSG+LRKLFN+VG+VFKG+GFYRTDSR Sbjct 1 MPTYSYACTACDNRFDIVQSFSDDSLTVCPACSGKLRKLFNSVGIVFKGSGFYRTDSR 58 >gi|317506823|ref|ZP_07964597.1| FmdB transcriptional regulator [Segniliparus rugosus ATCC BAA-974] gi|316254897|gb|EFV14193.1| FmdB transcriptional regulator [Segniliparus rugosus ATCC BAA-974] Length=110 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 45/64 (71%), Positives = 56/64 (88%), Gaps = 0/64 (0%) Query 1 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSRES 60 +PTYSY CTQC NRFD+VQ+F+D +LT CE+C GRLRK+F++VGVVFKG+GFYRTD+R S Sbjct 1 MPTYSYACTQCDNRFDIVQSFSDPSLTVCEQCQGRLRKVFDSVGVVFKGSGFYRTDARGS 60 Query 61 GKKS 64 G S Sbjct 61 GGAS 64 >gi|312138619|ref|YP_004005955.1| hypothetical protein REQ_11720 [Rhodococcus equi 103S] gi|325676314|ref|ZP_08155993.1| type I antifreeze protein [Rhodococcus equi ATCC 33707] gi|311887958|emb|CBH47270.1| conserved hypothetical protein [Rhodococcus equi 103S] gi|325552875|gb|EGD22558.1| type I antifreeze protein [Rhodococcus equi ATCC 33707] Length=94 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 44/67 (66%), Positives = 56/67 (84%), Gaps = 0/67 (0%) Query 1 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSRES 60 +PTYSY CT+C N+FD+VQ+F+DD LT C CSG+LRKLFN+VG+VFKG+GFYRTDSR Sbjct 1 MPTYSYACTECDNKFDIVQSFSDDTLTVCPACSGKLRKLFNSVGIVFKGSGFYRTDSRGG 60 Query 61 GKKSKSQ 67 G + S+ Sbjct 61 GSSTVSE 67 >gi|326383762|ref|ZP_08205447.1| regulatory protein, FmdB family [Gordonia neofelifaecis NRRL B-59395] gi|326197526|gb|EGD54715.1| regulatory protein, FmdB family [Gordonia neofelifaecis NRRL B-59395] Length=96 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 43/58 (75%), Positives = 53/58 (92%), Gaps = 0/58 (0%) Query 1 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSR 58 +PTYSY CT+C N+FD+ QAF+DD+LT C +CSGRLRKLFN+VG+VFKG+GFYRTDSR Sbjct 1 MPTYSYACTECDNKFDIQQAFSDDSLTECPQCSGRLRKLFNSVGIVFKGSGFYRTDSR 58 >gi|226365104|ref|YP_002782887.1| hypothetical protein ROP_56950 [Rhodococcus opacus B4] gi|226243594|dbj|BAH53942.1| hypothetical protein [Rhodococcus opacus B4] Length=102 Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 42/58 (73%), Positives = 53/58 (92%), Gaps = 0/58 (0%) Query 1 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSR 58 +PTYSY CT+C NRFD+VQ+F+D++LT C CSG+LRKLFN+VG+VFKG+GFYRTDSR Sbjct 1 MPTYSYACTECDNRFDIVQSFSDNSLTVCPACSGKLRKLFNSVGIVFKGSGFYRTDSR 58 >gi|269217389|ref|ZP_06161243.1| regulatory protein, FmdB family [Actinomyces sp. oral taxon 848 str. F0332] gi|269213170|gb|EEZ79510.1| regulatory protein, FmdB family [Actinomyces sp. oral taxon 848 str. F0332] Length=166 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 53/97 (55%), Positives = 67/97 (70%), Gaps = 3/97 (3%) Query 1 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSRES 60 +PTYSY CT+C N FDV Q+F+D+ L CE C G LRKLFN+VG+VFKG+GFY D+R S Sbjct 1 MPTYSYRCTECGNEFDVRQSFSDEPLKVCEACGGSLRKLFNSVGIVFKGSGFYHNDARSS 60 Query 61 GKKSKSQTNGSSTSESTKSSGS-SGSSGSSESKASGS 96 S+ S E++ S+GS SG S SSE+ SGS Sbjct 61 SGTLHSKN--SEGREASDSAGSRSGESASSENGNSGS 95 >gi|297563017|ref|YP_003681991.1| FmdB family regulatory protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847465|gb|ADH69485.1| regulatory protein, FmdB family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length=120 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 48/84 (58%), Positives = 61/84 (73%), Gaps = 3/84 (3%) Query 1 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSRES 60 +PTY Y CT+C + +VVQ+F+DDALT C C GRLRK+++AVG+VFKG+GFYRTD S Sbjct 1 MPTYQYACTECGAQMEVVQSFSDDALTVCPECEGRLRKVYSAVGIVFKGSGFYRTD---S 57 Query 61 GKKSKSQTNGSSTSESTKSSGSSG 84 GK S S S S +K SG+SG Sbjct 58 GKSSNSSVLTGSGSTESKDSGNSG 81 >gi|296140953|ref|YP_003648196.1| FmdB family regulatory protein [Tsukamurella paurometabola DSM 20162] gi|296029087|gb|ADG79857.1| regulatory protein, FmdB family [Tsukamurella paurometabola DSM 20162] Length=90 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 49/90 (55%), Positives = 61/90 (68%), Gaps = 5/90 (5%) Query 1 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSRES 60 +PTYSY C +C FD VQ+F+DD LT C C G LRKLFN+VGVVFKG+GFYRTDSR S Sbjct 1 MPTYSYACKECGEAFDAVQSFSDDPLTVCPNCGGPLRKLFNSVGVVFKGSGFYRTDSRSS 60 Query 61 GKKSKSQTNGSSTSEST-----KSSGSSGS 85 + ++T S S T K++ S+GS Sbjct 61 KADTTAKTEPKSASSDTAAKVEKATNSAGS 90 >gi|291009064|ref|ZP_06567037.1| hypothetical protein SeryN2_31475 [Saccharopolyspora erythraea NRRL 2338] Length=109 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 40/58 (69%), Positives = 51/58 (88%), Gaps = 0/58 (0%) Query 1 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSR 58 +PTY Y CT+C +RF+ VQ+F +D+LTTC C+GRLRKLFNAVG+VFKG+GFYRTD+R Sbjct 1 MPTYQYACTECDHRFEAVQSFKEDSLTTCPECTGRLRKLFNAVGIVFKGSGFYRTDNR 58 >gi|296393687|ref|YP_003658571.1| FmdB family regulatory protein [Segniliparus rotundus DSM 44985] gi|296180834|gb|ADG97740.1| regulatory protein, FmdB family [Segniliparus rotundus DSM 44985] Length=107 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 42/60 (70%), Positives = 53/60 (89%), Gaps = 0/60 (0%) Query 1 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSRES 60 +PTYSY CTQC NRFD+VQ+F+D +LT C +C GRLRK+F++VGVVFKG+GFYRTD+R S Sbjct 1 MPTYSYACTQCDNRFDIVQSFSDASLTVCGQCQGRLRKVFDSVGVVFKGSGFYRTDARGS 60 >gi|145593300|ref|YP_001157597.1| FmdB family regulatory protein [Salinispora tropica CNB-440] gi|145302637|gb|ABP53219.1| putative regulatory protein, FmdB family [Salinispora tropica CNB-440] Length=132 Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 38/58 (66%), Positives = 48/58 (83%), Gaps = 0/58 (0%) Query 1 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSR 58 +PTY Y CT C ++ + VQ+FTD+ LT C C+GRLRKLFN+VG+VFKG+GFYRTDSR Sbjct 1 MPTYQYACTACGHQLEAVQSFTDEPLTECPTCAGRLRKLFNSVGIVFKGSGFYRTDSR 58 >gi|258654755|ref|YP_003203911.1| FmdB family regulatory protein [Nakamurella multipartita DSM 44233] gi|258557980|gb|ACV80922.1| regulatory protein, FmdB family [Nakamurella multipartita DSM 44233] Length=119 Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 41/58 (71%), Positives = 51/58 (88%), Gaps = 0/58 (0%) Query 1 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSR 58 +PTY Y CT+C +RF+ VQAFTDD+LTTC CSG+LRK++ +VGVVFKG+GFYRTDSR Sbjct 1 MPTYQYACTECGHRFEAVQAFTDDSLTTCPVCSGQLRKVYGSVGVVFKGSGFYRTDSR 58 >gi|333921216|ref|YP_004494797.1| hypothetical protein AS9A_3559 [Amycolicicoccus subflavus DQS3-9A1] gi|333483437|gb|AEF41997.1| hypothetical protein AS9A_3559 [Amycolicicoccus subflavus DQS3-9A1] Length=104 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 39/59 (67%), Positives = 53/59 (90%), Gaps = 0/59 (0%) Query 1 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSRE 59 +PTYSY C C ++FD+VQ+F+D +LT CE+C+G+LRKLFN+VG+VFKG+GFYRTDSR+ Sbjct 1 MPTYSYACYDCDDKFDIVQSFSDASLTVCEKCNGKLRKLFNSVGIVFKGSGFYRTDSRK 59 >gi|119715034|ref|YP_921999.1| FmdB family regulatory protein [Nocardioides sp. JS614] gi|119535695|gb|ABL80312.1| putative regulatory protein, FmdB family [Nocardioides sp. JS614] Length=93 Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 42/58 (73%), Positives = 49/58 (85%), Gaps = 0/58 (0%) Query 1 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSR 58 +PTY Y CT+C + F+ Q+F+DDALT C CSGRLRKLFNAVGVVFKG+GFYRTDSR Sbjct 1 MPTYQYACTECGHAFEQFQSFSDDALTECPSCSGRLRKLFNAVGVVFKGSGFYRTDSR 58 >gi|315501757|ref|YP_004080644.1| regulatory protein, fmdb family [Micromonospora sp. L5] gi|315408376|gb|ADU06493.1| regulatory protein, FmdB family [Micromonospora sp. L5] Length=120 Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 43/74 (59%), Positives = 55/74 (75%), Gaps = 5/74 (6%) Query 1 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSRES 60 +PTY Y CT C ++ + VQ+F+D+ LT C C GRLRKLFN+VG+VFKG+GFYRTDSR S Sbjct 1 MPTYQYACTACGHQLEAVQSFSDEPLTECPACEGRLRKLFNSVGIVFKGSGFYRTDSRPS 60 Query 61 GKKSKSQTNGSSTS 74 G NG+ST+ Sbjct 61 GSD-----NGASTT 69 >gi|336319683|ref|YP_004599651.1| FmdB family regulatory protein [Cellvibrio gilvus ATCC 13127] gi|336103264|gb|AEI11083.1| regulatory protein, FmdB family [Cellvibrio gilvus ATCC 13127] Length=115 Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 42/66 (64%), Positives = 55/66 (84%), Gaps = 1/66 (1%) Query 1 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSRES 60 +PTYSY CTQCA+ FD+ Q+F+D++L+ C C GRLRK+F++VGVVFKG+GFYR D+R S Sbjct 1 MPTYSYACTQCAHAFDIHQSFSDESLSVCPECEGRLRKVFSSVGVVFKGSGFYRNDAR-S 59 Query 61 GKKSKS 66 G KS S Sbjct 60 GAKSSS 65 >gi|300790121|ref|YP_003770412.1| hypothetical protein AMED_8313 [Amycolatopsis mediterranei U32] gi|299799635|gb|ADJ50010.1| conserved hypothetical protein [Amycolatopsis mediterranei U32] gi|340531801|gb|AEK47006.1| hypothetical protein RAM_42695 [Amycolatopsis mediterranei S699] Length=99 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 41/68 (61%), Positives = 55/68 (81%), Gaps = 0/68 (0%) Query 1 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSRES 60 +PTY Y C +C +RF+ VQ+F+D +LT C +CSG LRK+F++VGVVFKG+GFYRTDSR+S Sbjct 1 MPTYQYACKECDHRFEAVQSFSDPSLTVCPQCSGALRKVFSSVGVVFKGSGFYRTDSRDS 60 Query 61 GKKSKSQT 68 K S + T Sbjct 61 SKSSTAAT 68 >gi|284033646|ref|YP_003383577.1| regulatory protein, FmdB family [Kribbella flavida DSM 17836] gi|283812939|gb|ADB34778.1| regulatory protein, FmdB family [Kribbella flavida DSM 17836] Length=118 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 42/61 (69%), Positives = 48/61 (79%), Gaps = 0/61 (0%) Query 1 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSRES 60 +PTY Y+CT C +V Q+FTDDALT C C G LRK+FNAVGVVFKG+GFYRTDSR S Sbjct 1 MPTYQYQCTDCGEALEVRQSFTDDALTVCPNCDGTLRKVFNAVGVVFKGSGFYRTDSRSS 60 Query 61 G 61 G Sbjct 61 G 61 >gi|117927371|ref|YP_871922.1| FmdB family regulatory protein [Acidothermus cellulolyticus 11B] gi|117647834|gb|ABK51936.1| putative regulatory protein, FmdB family [Acidothermus cellulolyticus 11B] Length=102 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 41/68 (61%), Positives = 52/68 (77%), Gaps = 0/68 (0%) Query 1 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSRES 60 +PTY Y CT C R +VVQ FTD+ LT C C GRLRK+F++VGVVFKG+GFYRTDSR + Sbjct 1 MPTYQYVCTSCGERLEVVQKFTDEPLTECPTCQGRLRKVFSSVGVVFKGSGFYRTDSRAA 60 Query 61 GKKSKSQT 68 +KS++ Sbjct 61 ANGAKSES 68 >gi|256374775|ref|YP_003098435.1| FmdB family regulatory protein [Actinosynnema mirum DSM 43827] gi|255919078|gb|ACU34589.1| regulatory protein, FmdB family [Actinosynnema mirum DSM 43827] Length=101 Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 40/58 (69%), Positives = 49/58 (85%), Gaps = 0/58 (0%) Query 1 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSR 58 +PTY Y CT+C +RF+ VQ+F+D ALT C CSG+LRKL+ AVGVVFKG+GFYRTDSR Sbjct 1 MPTYQYACTECDHRFEAVQSFSDSALTECPECSGKLRKLYGAVGVVFKGSGFYRTDSR 58 >gi|336120234|ref|YP_004575013.1| hypothetical protein MLP_45960 [Microlunatus phosphovorus NM-1] gi|334688025|dbj|BAK37610.1| hypothetical protein MLP_45960 [Microlunatus phosphovorus NM-1] Length=119 Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 41/63 (66%), Positives = 46/63 (74%), Gaps = 0/63 (0%) Query 1 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSRES 60 +PTY Y C+ C N + VQ FTD ALT C C G LRK+FNAVGVVFKG+GFYRTDSR Sbjct 1 MPTYQYRCSDCGNELEAVQKFTDAALTDCPTCDGSLRKVFNAVGVVFKGSGFYRTDSRAD 60 Query 61 GKK 63 KK Sbjct 61 QKK 63 >gi|325001319|ref|ZP_08122431.1| type I antifreeze protein [Pseudonocardia sp. P1] Length=123 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 39/56 (70%), Positives = 48/56 (86%), Gaps = 0/56 (0%) Query 1 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTD 56 +PTY Y CT C +RFD VQAF+DDALTTC C G+LRK+F++VG+VFKG+GFYRTD Sbjct 1 MPTYQYACTSCDHRFDAVQAFSDDALTTCPNCGGKLRKVFSSVGIVFKGSGFYRTD 56 >gi|148273632|ref|YP_001223193.1| hypothetical protein CMM_2448 [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831562|emb|CAN02529.1| conserved hypothetical protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length=135 Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 41/58 (71%), Positives = 46/58 (80%), Gaps = 0/58 (0%) Query 1 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSR 58 +PTYSY CT C N FD+VQAFTDD+LT C C G+LRKLF AVGV F G+GFYR DSR Sbjct 1 MPTYSYRCTVCGNAFDIVQAFTDDSLTECPVCGGKLRKLFAAVGVSFTGSGFYRNDSR 58 >gi|238062535|ref|ZP_04607244.1| fmdB family transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237884346|gb|EEP73174.1| fmdB family transcriptional regulator [Micromonospora sp. ATCC 39149] Length=140 Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 41/72 (57%), Positives = 53/72 (74%), Gaps = 3/72 (4%) Query 1 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSRES 60 VPTY Y CT C + + VQ+F+D+ LT C C+GRLRK+FN+VG+VFKG+GFYRTDSR Sbjct 8 VPTYQYACTACGQQLEAVQSFSDEPLTECPACAGRLRKVFNSVGIVFKGSGFYRTDSRSG 67 Query 61 GKKSKSQTNGSS 72 +K NGS+ Sbjct 68 SDAAK---NGSA 76 >gi|271969841|ref|YP_003344037.1| FmdB family regulatory protein [Streptosporangium roseum DSM 43021] gi|270513016|gb|ACZ91294.1| putative regulatory protein, FmdB family [Streptosporangium roseum DSM 43021] Length=115 Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 38/56 (68%), Positives = 46/56 (83%), Gaps = 0/56 (0%) Query 1 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTD 56 +PTY Y C+ C N FD+VQ F+DDALT C CSG LRK+F+AVG+VFKG+GFYRTD Sbjct 1 MPTYQYACSACGNEFDIVQKFSDDALTECPTCSGELRKVFSAVGIVFKGSGFYRTD 56 >gi|331694667|ref|YP_004330906.1| FmdB family regulatory protein [Pseudonocardia dioxanivorans CB1190] gi|326949356|gb|AEA23053.1| regulatory protein, FmdB family [Pseudonocardia dioxanivorans CB1190] Length=119 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 38/60 (64%), Positives = 49/60 (82%), Gaps = 0/60 (0%) Query 1 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSRES 60 +PTY Y CT C +RF+ VQ+F+DD+LT C C G LRK+F++VG+VFKG+GFYRTDSR S Sbjct 1 MPTYQYACTACDHRFEAVQSFSDDSLTVCPECGGPLRKVFSSVGIVFKGSGFYRTDSRGS 60 >gi|302519829|ref|ZP_07272171.1| FmdB family regulatory protein [Streptomyces sp. SPB78] gi|318056940|ref|ZP_07975663.1| hypothetical protein SSA3_03294 [Streptomyces sp. SA3_actG] gi|318080288|ref|ZP_07987620.1| hypothetical protein SSA3_27270 [Streptomyces sp. SA3_actF] gi|302428724|gb|EFL00540.1| FmdB family regulatory protein [Streptomyces sp. SPB78] Length=109 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 36/58 (63%), Positives = 46/58 (80%), Gaps = 0/58 (0%) Query 1 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSR 58 +PTY Y+CT+C + VQ FTDD+LT C C GRL+K+F+AVG+VFKG+GFYR DSR Sbjct 1 MPTYQYQCTECGEGLEAVQKFTDDSLTECPNCGGRLKKVFSAVGIVFKGSGFYRNDSR 58 >gi|220913318|ref|YP_002488627.1| FmdB family regulatory protein [Arthrobacter chlorophenolicus A6] gi|219860196|gb|ACL40538.1| regulatory protein, FmdB family [Arthrobacter chlorophenolicus A6] Length=86 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 38/60 (64%), Positives = 49/60 (82%), Gaps = 0/60 (0%) Query 1 VPTYSYECTQCANRFDVVQAFTDDALTTCERCSGRLRKLFNAVGVVFKGTGFYRTDSRES 60 +PTY+Y C C + FD+VQ+F+D +LT+C C G LRK FN+VGVVFKG+GFYRTDSR+S Sbjct 1 MPTYAYACKDCGHAFDIVQSFSDSSLTSCPECEGTLRKKFNSVGVVFKGSGFYRTDSRDS 60 Lambda K H 0.303 0.115 0.310 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 129022162688 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40