BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0996 Length=358 Score E Sequences producing significant alignments: (Bits) Value gi|254363914|ref|ZP_04979960.1| conserved transmembrane protein ... 709 0.0 gi|15608136|ref|NP_215511.1| transmembrane protein [Mycobacteriu... 708 0.0 gi|15840421|ref|NP_335458.1| hypothetical protein MT1025 [Mycoba... 707 0.0 gi|121636923|ref|YP_977146.1| putative transmembrane protein [My... 707 0.0 gi|289555222|ref|ZP_06444432.1| conserved membrane protein [Myco... 707 0.0 gi|289446577|ref|ZP_06436321.1| conserved membrane protein [Myco... 706 0.0 gi|31792187|ref|NP_854680.1| transmembrane protein [Mycobacteriu... 705 0.0 gi|167968062|ref|ZP_02550339.1| conserved transmembrane protein ... 613 1e-173 gi|340626008|ref|YP_004744460.1| hypothetical protein MCAN_10011... 603 1e-170 gi|15826997|ref|NP_301260.1| hypothetical protein ML0185 [Mycoba... 404 1e-110 gi|240169337|ref|ZP_04747996.1| hypothetical protein MkanA1_0849... 395 5e-108 gi|118619761|ref|YP_908093.1| hypothetical protein MUL_4690 [Myc... 377 2e-102 gi|336461399|gb|EGO40270.1| hypothetical protein MAPs_31400 [Myc... 370 1e-100 gi|183984488|ref|YP_001852779.1| hypothetical protein MMAR_4518 ... 368 6e-100 gi|118463118|ref|YP_880358.1| hypothetical protein MAV_1105 [Myc... 368 7e-100 gi|41407025|ref|NP_959861.1| hypothetical protein MAP0927 [Mycob... 367 1e-99 gi|254773985|ref|ZP_05215501.1| hypothetical protein MaviaA2_048... 367 1e-99 gi|254823436|ref|ZP_05228437.1| hypothetical protein MintA_26136... 364 1e-98 gi|296169803|ref|ZP_06851417.1| conserved transmembrane protein ... 362 4e-98 gi|289761130|ref|ZP_06520508.1| conserved hypothetical protein [... 358 5e-97 gi|342860590|ref|ZP_08717241.1| hypothetical protein MCOL_16986 ... 343 3e-92 gi|126437230|ref|YP_001072921.1| hypothetical protein Mjls_4665 ... 290 3e-76 gi|108801251|ref|YP_641448.1| hypothetical protein Mmcs_4287 [My... 280 3e-73 gi|118471114|ref|YP_889706.1| hypothetical protein MSMEG_5468 [M... 270 3e-70 gi|120405780|ref|YP_955609.1| hypothetical protein Mvan_4830 [My... 270 3e-70 gi|145222490|ref|YP_001133168.1| hypothetical protein Mflv_1900 ... 237 3e-60 gi|315442937|ref|YP_004075816.1| hypothetical protein Mspyr1_130... 234 2e-59 gi|169628184|ref|YP_001701833.1| hypothetical protein MAB_1089 [... 218 1e-54 gi|333989584|ref|YP_004522198.1| transmembrane protein [Mycobact... 194 1e-47 gi|229495039|ref|ZP_04388785.1| conserved hypothetical protein [... 123 5e-26 gi|226307873|ref|YP_002767833.1| hypothetical protein RER_43860 ... 122 7e-26 gi|111022601|ref|YP_705573.1| hypothetical protein RHA1_ro05635 ... 113 4e-23 gi|226365109|ref|YP_002782892.1| hypothetical protein ROP_57000 ... 113 4e-23 gi|312138625|ref|YP_004005961.1| integral membrane protein [Rhod... 104 2e-20 gi|227832664|ref|YP_002834371.1| hypothetical protein cauri_0836... 97.4 3e-18 gi|306835640|ref|ZP_07468649.1| conserved hypothetical protein [... 94.4 3e-17 gi|227501482|ref|ZP_03931531.1| conserved hypothetical protein [... 94.0 3e-17 gi|213966065|ref|ZP_03394253.1| conserved hypothetical protein [... 89.7 6e-16 gi|319950603|ref|ZP_08024511.1| hypothetical protein ES5_13498 [... 87.8 2e-15 gi|227504181|ref|ZP_03934230.1| conserved hypothetical protein [... 87.8 3e-15 gi|296118255|ref|ZP_06836836.1| putative membrane protein [Coryn... 81.3 2e-13 gi|54026924|ref|YP_121166.1| hypothetical protein nfa49500 [Noca... 81.3 2e-13 gi|305681882|ref|ZP_07404686.1| conserved hypothetical protein [... 80.1 5e-13 gi|225023046|ref|ZP_03712238.1| hypothetical protein CORMATOL_03... 80.1 5e-13 gi|311740863|ref|ZP_07714690.1| conserved hypothetical protein [... 78.6 1e-12 gi|62389774|ref|YP_225176.1| hypothetical protein cg1007 [Coryne... 78.6 1e-12 gi|255325454|ref|ZP_05366558.1| conserved hypothetical protein [... 78.6 2e-12 gi|19552110|ref|NP_600112.1| hypothetical protein NCgl0849 [Cory... 78.6 2e-12 gi|333921211|ref|YP_004494792.1| hypothetical protein AS9A_3554 ... 77.0 4e-12 gi|227542437|ref|ZP_03972486.1| conserved transmembrane protein ... 75.9 1e-11 >gi|254363914|ref|ZP_04979960.1| conserved transmembrane protein [Mycobacterium tuberculosis str. Haarlem] gi|289744732|ref|ZP_06504110.1| transmembrane protein [Mycobacterium tuberculosis 02_1987] gi|134149428|gb|EBA41473.1| conserved transmembrane protein [Mycobacterium tuberculosis str. Haarlem] gi|289685260|gb|EFD52748.1| transmembrane protein [Mycobacterium tuberculosis 02_1987] Length=372 Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/358 (100%), Positives = 358/358 (100%), Gaps = 0/358 (0%) Query 1 MPSIPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPA 60 MPSIPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPA Sbjct 15 MPSIPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPA 74 Query 61 AGHRWGYLPPEGQGDDPDWKPEEDWRDDPVEDGFADVEHDIDEDQEADDARRRGAVVMKV 120 AGHRWGYLPPEGQGDDPDWKPEEDWRDDPVEDGFADVEHDIDEDQEADDARRRGAVVMKV Sbjct 75 AGHRWGYLPPEGQGDDPDWKPEEDWRDDPVEDGFADVEHDIDEDQEADDARRRGAVVMKV 134 Query 121 AAPQTAGADEPDYLDVDVVEEDSEALPVGAGAAVGESADEADAEAADGVAGHADPEADPV 180 AAPQTAGADEPDYLDVDVVEEDSEALPVGAGAAVGESADEADAEAADGVAGHADPEADPV Sbjct 135 AAPQTAGADEPDYLDVDVVEEDSEALPVGAGAAVGESADEADAEAADGVAGHADPEADPV 194 Query 181 EYEYEYEYVEDTCGLELEEDDQEAPPTVASGTSRRRRFDTKTAAAVSARKYTFRKRALIV 240 EYEYEYEYVEDTCGLELEEDDQEAPPTVASGTSRRRRFDTKTAAAVSARKYTFRKRALIV Sbjct 195 EYEYEYEYVEDTCGLELEEDDQEAPPTVASGTSRRRRFDTKTAAAVSARKYTFRKRALIV 254 Query 241 MAVILVGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTRIEEKVRRRRMQRIARARL 300 MAVILVGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTRIEEKVRRRRMQRIARARL Sbjct 255 MAVILVGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTRIEEKVRRRRMQRIARARL 314 Query 301 GVENTRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHLESAAPIRNYGWPRDLPRAVGQ 358 GVENTRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHLESAAPIRNYGWPRDLPRAVGQ Sbjct 315 GVENTRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHLESAAPIRNYGWPRDLPRAVGQ 372 >gi|15608136|ref|NP_215511.1| transmembrane protein [Mycobacterium tuberculosis H37Rv] gi|148660777|ref|YP_001282300.1| putative transmembrane protein [Mycobacterium tuberculosis H37Ra] gi|254549980|ref|ZP_05140427.1| putative transmembrane protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] 31 more sequence titles Length=358 Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/358 (100%), Positives = 358/358 (100%), Gaps = 0/358 (0%) Query 1 MPSIPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPA 60 MPSIPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPA Sbjct 1 MPSIPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPA 60 Query 61 AGHRWGYLPPEGQGDDPDWKPEEDWRDDPVEDGFADVEHDIDEDQEADDARRRGAVVMKV 120 AGHRWGYLPPEGQGDDPDWKPEEDWRDDPVEDGFADVEHDIDEDQEADDARRRGAVVMKV Sbjct 61 AGHRWGYLPPEGQGDDPDWKPEEDWRDDPVEDGFADVEHDIDEDQEADDARRRGAVVMKV 120 Query 121 AAPQTAGADEPDYLDVDVVEEDSEALPVGAGAAVGESADEADAEAADGVAGHADPEADPV 180 AAPQTAGADEPDYLDVDVVEEDSEALPVGAGAAVGESADEADAEAADGVAGHADPEADPV Sbjct 121 AAPQTAGADEPDYLDVDVVEEDSEALPVGAGAAVGESADEADAEAADGVAGHADPEADPV 180 Query 181 EYEYEYEYVEDTCGLELEEDDQEAPPTVASGTSRRRRFDTKTAAAVSARKYTFRKRALIV 240 EYEYEYEYVEDTCGLELEEDDQEAPPTVASGTSRRRRFDTKTAAAVSARKYTFRKRALIV Sbjct 181 EYEYEYEYVEDTCGLELEEDDQEAPPTVASGTSRRRRFDTKTAAAVSARKYTFRKRALIV 240 Query 241 MAVILVGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTRIEEKVRRRRMQRIARARL 300 MAVILVGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTRIEEKVRRRRMQRIARARL Sbjct 241 MAVILVGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTRIEEKVRRRRMQRIARARL 300 Query 301 GVENTRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHLESAAPIRNYGWPRDLPRAVGQ 358 GVENTRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHLESAAPIRNYGWPRDLPRAVGQ Sbjct 301 GVENTRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHLESAAPIRNYGWPRDLPRAVGQ 358 >gi|15840421|ref|NP_335458.1| hypothetical protein MT1025 [Mycobacterium tuberculosis CDC1551] gi|148822205|ref|YP_001286959.1| transmembrane protein [Mycobacterium tuberculosis F11] gi|253799976|ref|YP_003032977.1| hypothetical protein TBMG_02993 [Mycobacterium tuberculosis KZN 1435] 14 more sequence titles Length=391 Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/358 (100%), Positives = 358/358 (100%), Gaps = 0/358 (0%) Query 1 MPSIPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPA 60 MPSIPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPA Sbjct 34 MPSIPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPA 93 Query 61 AGHRWGYLPPEGQGDDPDWKPEEDWRDDPVEDGFADVEHDIDEDQEADDARRRGAVVMKV 120 AGHRWGYLPPEGQGDDPDWKPEEDWRDDPVEDGFADVEHDIDEDQEADDARRRGAVVMKV Sbjct 94 AGHRWGYLPPEGQGDDPDWKPEEDWRDDPVEDGFADVEHDIDEDQEADDARRRGAVVMKV 153 Query 121 AAPQTAGADEPDYLDVDVVEEDSEALPVGAGAAVGESADEADAEAADGVAGHADPEADPV 180 AAPQTAGADEPDYLDVDVVEEDSEALPVGAGAAVGESADEADAEAADGVAGHADPEADPV Sbjct 154 AAPQTAGADEPDYLDVDVVEEDSEALPVGAGAAVGESADEADAEAADGVAGHADPEADPV 213 Query 181 EYEYEYEYVEDTCGLELEEDDQEAPPTVASGTSRRRRFDTKTAAAVSARKYTFRKRALIV 240 EYEYEYEYVEDTCGLELEEDDQEAPPTVASGTSRRRRFDTKTAAAVSARKYTFRKRALIV Sbjct 214 EYEYEYEYVEDTCGLELEEDDQEAPPTVASGTSRRRRFDTKTAAAVSARKYTFRKRALIV 273 Query 241 MAVILVGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTRIEEKVRRRRMQRIARARL 300 MAVILVGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTRIEEKVRRRRMQRIARARL Sbjct 274 MAVILVGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTRIEEKVRRRRMQRIARARL 333 Query 301 GVENTRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHLESAAPIRNYGWPRDLPRAVGQ 358 GVENTRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHLESAAPIRNYGWPRDLPRAVGQ Sbjct 334 GVENTRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHLESAAPIRNYGWPRDLPRAVGQ 391 >gi|121636923|ref|YP_977146.1| putative transmembrane protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224989395|ref|YP_002644082.1| putative transmembrane protein [Mycobacterium bovis BCG str. Tokyo 172] gi|289442416|ref|ZP_06432160.1| conserved membrane protein [Mycobacterium tuberculosis T46] 14 more sequence titles Length=358 Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/358 (99%), Positives = 358/358 (100%), Gaps = 0/358 (0%) Query 1 MPSIPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPA 60 MPSIPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPA Sbjct 1 MPSIPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPA 60 Query 61 AGHRWGYLPPEGQGDDPDWKPEEDWRDDPVEDGFADVEHDIDEDQEADDARRRGAVVMKV 120 AGHRWGYLPPEGQGDDPDWKPEEDWRDDPVEDGFADVEHDIDEDQEADDARRRGAVVMKV Sbjct 61 AGHRWGYLPPEGQGDDPDWKPEEDWRDDPVEDGFADVEHDIDEDQEADDARRRGAVVMKV 120 Query 121 AAPQTAGADEPDYLDVDVVEEDSEALPVGAGAAVGESADEADAEAADGVAGHADPEADPV 180 AAPQTAGADEPDYLDVDVVEEDSEALPVGAGAAVGESADEADAEAADGVAGHADPEADPV Sbjct 121 AAPQTAGADEPDYLDVDVVEEDSEALPVGAGAAVGESADEADAEAADGVAGHADPEADPV 180 Query 181 EYEYEYEYVEDTCGLELEEDDQEAPPTVASGTSRRRRFDTKTAAAVSARKYTFRKRALIV 240 EYEYEYEYVEDTCGLELEEDDQEAPPTVASGTSRRRRFDTKTAAAVSARKYTFRKRALIV Sbjct 181 EYEYEYEYVEDTCGLELEEDDQEAPPTVASGTSRRRRFDTKTAAAVSARKYTFRKRALIV 240 Query 241 MAVILVGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTRIEEKVRRRRMQRIARARL 300 MAVILVGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTRIEEKVRRRRMQRIARARL Sbjct 241 MAVILVGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTRIEEKVRRRRMQRIARARL 300 Query 301 GVENTRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHLESAAPIRNYGWPRDLPRAVGQ 358 GV+NTRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHLESAAPIRNYGWPRDLPRAVGQ Sbjct 301 GVQNTRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHLESAAPIRNYGWPRDLPRAVGQ 358 >gi|289555222|ref|ZP_06444432.1| conserved membrane protein [Mycobacterium tuberculosis KZN 605] gi|289439854|gb|EFD22347.1| conserved membrane protein [Mycobacterium tuberculosis KZN 605] Length=383 Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/358 (100%), Positives = 358/358 (100%), Gaps = 0/358 (0%) Query 1 MPSIPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPA 60 MPSIPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPA Sbjct 26 MPSIPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPA 85 Query 61 AGHRWGYLPPEGQGDDPDWKPEEDWRDDPVEDGFADVEHDIDEDQEADDARRRGAVVMKV 120 AGHRWGYLPPEGQGDDPDWKPEEDWRDDPVEDGFADVEHDIDEDQEADDARRRGAVVMKV Sbjct 86 AGHRWGYLPPEGQGDDPDWKPEEDWRDDPVEDGFADVEHDIDEDQEADDARRRGAVVMKV 145 Query 121 AAPQTAGADEPDYLDVDVVEEDSEALPVGAGAAVGESADEADAEAADGVAGHADPEADPV 180 AAPQTAGADEPDYLDVDVVEEDSEALPVGAGAAVGESADEADAEAADGVAGHADPEADPV Sbjct 146 AAPQTAGADEPDYLDVDVVEEDSEALPVGAGAAVGESADEADAEAADGVAGHADPEADPV 205 Query 181 EYEYEYEYVEDTCGLELEEDDQEAPPTVASGTSRRRRFDTKTAAAVSARKYTFRKRALIV 240 EYEYEYEYVEDTCGLELEEDDQEAPPTVASGTSRRRRFDTKTAAAVSARKYTFRKRALIV Sbjct 206 EYEYEYEYVEDTCGLELEEDDQEAPPTVASGTSRRRRFDTKTAAAVSARKYTFRKRALIV 265 Query 241 MAVILVGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTRIEEKVRRRRMQRIARARL 300 MAVILVGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTRIEEKVRRRRMQRIARARL Sbjct 266 MAVILVGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTRIEEKVRRRRMQRIARARL 325 Query 301 GVENTRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHLESAAPIRNYGWPRDLPRAVGQ 358 GVENTRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHLESAAPIRNYGWPRDLPRAVGQ Sbjct 326 GVENTRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHLESAAPIRNYGWPRDLPRAVGQ 383 >gi|289446577|ref|ZP_06436321.1| conserved membrane protein [Mycobacterium tuberculosis CPHL_A] gi|289419535|gb|EFD16736.1| conserved membrane protein [Mycobacterium tuberculosis CPHL_A] Length=358 Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/358 (99%), Positives = 358/358 (100%), Gaps = 0/358 (0%) Query 1 MPSIPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPA 60 MPSIPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPA Sbjct 1 MPSIPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPA 60 Query 61 AGHRWGYLPPEGQGDDPDWKPEEDWRDDPVEDGFADVEHDIDEDQEADDARRRGAVVMKV 120 AGHRWGYLPPEGQGDDPDWKPEEDWRDDPVEDGFADVEHDIDEDQEADDARRRGAVVMKV Sbjct 61 AGHRWGYLPPEGQGDDPDWKPEEDWRDDPVEDGFADVEHDIDEDQEADDARRRGAVVMKV 120 Query 121 AAPQTAGADEPDYLDVDVVEEDSEALPVGAGAAVGESADEADAEAADGVAGHADPEADPV 180 AAPQTAGADEPDYLDVDVVEEDSEALPVGAGAAVGESADEADAEAADGVAGHADPEADPV Sbjct 121 AAPQTAGADEPDYLDVDVVEEDSEALPVGAGAAVGESADEADAEAADGVAGHADPEADPV 180 Query 181 EYEYEYEYVEDTCGLELEEDDQEAPPTVASGTSRRRRFDTKTAAAVSARKYTFRKRALIV 240 EYEYEYEYVEDTCGLELEEDDQEAPPTVASGTSRRRRFDTKTAAAVSARKYTFRKRALIV Sbjct 181 EYEYEYEYVEDTCGLELEEDDQEAPPTVASGTSRRRRFDTKTAAAVSARKYTFRKRALIV 240 Query 241 MAVILVGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTRIEEKVRRRRMQRIARARL 300 MAVILVGSAAAAFELTPVAWWICGSATG+TVLYLAYLRRQTRIEEKVRRRRMQRIARARL Sbjct 241 MAVILVGSAAAAFELTPVAWWICGSATGLTVLYLAYLRRQTRIEEKVRRRRMQRIARARL 300 Query 301 GVENTRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHLESAAPIRNYGWPRDLPRAVGQ 358 GV+NTRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHLESAAPIRNYGWPRDLPRAVGQ Sbjct 301 GVQNTRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHLESAAPIRNYGWPRDLPRAVGQ 358 >gi|31792187|ref|NP_854680.1| transmembrane protein [Mycobacterium bovis AF2122/97] gi|31617775|emb|CAD93884.1| PROBABLE CONSERVED TRANSMEMBRANE PROTEIN [Mycobacterium bovis AF2122/97] Length=358 Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/358 (99%), Positives = 357/358 (99%), Gaps = 0/358 (0%) Query 1 MPSIPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPA 60 MPSIPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPA Sbjct 1 MPSIPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPA 60 Query 61 AGHRWGYLPPEGQGDDPDWKPEEDWRDDPVEDGFADVEHDIDEDQEADDARRRGAVVMKV 120 AGHRWGYLPPEGQGDDPDWKPEEDWRDDPVE GFADVEHDIDEDQEADDARRRGAVVMKV Sbjct 61 AGHRWGYLPPEGQGDDPDWKPEEDWRDDPVEGGFADVEHDIDEDQEADDARRRGAVVMKV 120 Query 121 AAPQTAGADEPDYLDVDVVEEDSEALPVGAGAAVGESADEADAEAADGVAGHADPEADPV 180 AAPQTAGADEPDYLDVDVVEEDSEALPVGAGAAVGESADEADAEAADGVAGHADPEADPV Sbjct 121 AAPQTAGADEPDYLDVDVVEEDSEALPVGAGAAVGESADEADAEAADGVAGHADPEADPV 180 Query 181 EYEYEYEYVEDTCGLELEEDDQEAPPTVASGTSRRRRFDTKTAAAVSARKYTFRKRALIV 240 EYEYEYEYVEDTCGLELEEDDQEAPPTVASGTSRRRRFDTKTAAAVSARKYTFRKRALIV Sbjct 181 EYEYEYEYVEDTCGLELEEDDQEAPPTVASGTSRRRRFDTKTAAAVSARKYTFRKRALIV 240 Query 241 MAVILVGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTRIEEKVRRRRMQRIARARL 300 MAVILVGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTRIEEKVRRRRMQRIARARL Sbjct 241 MAVILVGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTRIEEKVRRRRMQRIARARL 300 Query 301 GVENTRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHLESAAPIRNYGWPRDLPRAVGQ 358 GV+NTRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHLESAAPIRNYGWPRDLPRAVGQ Sbjct 301 GVQNTRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHLESAAPIRNYGWPRDLPRAVGQ 358 >gi|167968062|ref|ZP_02550339.1| conserved transmembrane protein [Mycobacterium tuberculosis H37Ra] Length=329 Score = 613 bits (1581), Expect = 1e-173, Method: Compositional matrix adjust. Identities = 311/311 (100%), Positives = 311/311 (100%), Gaps = 0/311 (0%) Query 48 GAGARLLKRGGPAAGHRWGYLPPEGQGDDPDWKPEEDWRDDPVEDGFADVEHDIDEDQEA 107 GAGARLLKRGGPAAGHRWGYLPPEGQGDDPDWKPEEDWRDDPVEDGFADVEHDIDEDQEA Sbjct 19 GAGARLLKRGGPAAGHRWGYLPPEGQGDDPDWKPEEDWRDDPVEDGFADVEHDIDEDQEA 78 Query 108 DDARRRGAVVMKVAAPQTAGADEPDYLDVDVVEEDSEALPVGAGAAVGESADEADAEAAD 167 DDARRRGAVVMKVAAPQTAGADEPDYLDVDVVEEDSEALPVGAGAAVGESADEADAEAAD Sbjct 79 DDARRRGAVVMKVAAPQTAGADEPDYLDVDVVEEDSEALPVGAGAAVGESADEADAEAAD 138 Query 168 GVAGHADPEADPVEYEYEYEYVEDTCGLELEEDDQEAPPTVASGTSRRRRFDTKTAAAVS 227 GVAGHADPEADPVEYEYEYEYVEDTCGLELEEDDQEAPPTVASGTSRRRRFDTKTAAAVS Sbjct 139 GVAGHADPEADPVEYEYEYEYVEDTCGLELEEDDQEAPPTVASGTSRRRRFDTKTAAAVS 198 Query 228 ARKYTFRKRALIVMAVILVGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTRIEEKV 287 ARKYTFRKRALIVMAVILVGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTRIEEKV Sbjct 199 ARKYTFRKRALIVMAVILVGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTRIEEKV 258 Query 288 RRRRMQRIARARLGVENTRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHLESAAPIRNYG 347 RRRRMQRIARARLGVENTRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHLESAAPIRNYG Sbjct 259 RRRRMQRIARARLGVENTRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHLESAAPIRNYG 318 Query 348 WPRDLPRAVGQ 358 WPRDLPRAVGQ Sbjct 319 WPRDLPRAVGQ 329 >gi|340626008|ref|YP_004744460.1| hypothetical protein MCAN_10011 [Mycobacterium canettii CIPT 140010059] gi|340004198|emb|CCC43338.1| putative conserved transmembrane protein [Mycobacterium canettii CIPT 140010059] Length=356 Score = 603 bits (1555), Expect = 1e-170, Method: Compositional matrix adjust. Identities = 353/358 (99%), Positives = 355/358 (99%), Gaps = 2/358 (0%) Query 1 MPSIPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPA 60 MPSIPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPA Sbjct 1 MPSIPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPA 60 Query 61 AGHRWGYLPPEGQGDDPDWKPEEDWRDDPVEDGFADVEHDIDEDQEADDARRRGAVVMKV 120 AGHRWGYLPPEGQGDDPDWKPEEDWRDDPVEDGFADVEHDIDEDQEADDARRRGA VMKV Sbjct 61 AGHRWGYLPPEGQGDDPDWKPEEDWRDDPVEDGFADVEHDIDEDQEADDARRRGAAVMKV 120 Query 121 AAPQTAGADEPDYLDVDVVEEDSEALPVGAGAAVGESADEADAEAADGVAGHADPEADPV 180 AAPQTAGADEPDYLDVDVVEEDSEALPVGAGAAVGE+ADEADAEAADGVAGHADPEADPV Sbjct 121 AAPQTAGADEPDYLDVDVVEEDSEALPVGAGAAVGEAADEADAEAADGVAGHADPEADPV 180 Query 181 EYEYEYEYVEDTCGLELEEDDQEAPPTVASGTSRRRRFDTKTAAAVSARKYTFRKRALIV 240 EYEYEYVEDTCGLELEEDDQEAPPTVASGTSRRRRFDTKTAAAVSARKYTFRKRALIV Sbjct 181 --EYEYEYVEDTCGLELEEDDQEAPPTVASGTSRRRRFDTKTAAAVSARKYTFRKRALIV 238 Query 241 MAVILVGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTRIEEKVRRRRMQRIARARL 300 MAVILVGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTRIEEKVRRRRMQRIARARL Sbjct 239 MAVILVGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTRIEEKVRRRRMQRIARARL 298 Query 301 GVENTRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHLESAAPIRNYGWPRDLPRAVGQ 358 GV+NTRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHLESAAPIRNYGWPRDLPRAVGQ Sbjct 299 GVQNTRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHLESAAPIRNYGWPRDLPRAVGQ 356 >gi|15826997|ref|NP_301260.1| hypothetical protein ML0185 [Mycobacterium leprae TN] gi|221229475|ref|YP_002502891.1| hypothetical protein MLBr_00185 [Mycobacterium leprae Br4923] gi|4455713|emb|CAB36699.1| putative membrane protein MLCB373.37 [Mycobacterium leprae] gi|13092544|emb|CAC29693.1| putative membrane protein [Mycobacterium leprae] gi|219932582|emb|CAR70278.1| putative membrane protein [Mycobacterium leprae Br4923] Length=342 Score = 404 bits (1038), Expect = 1e-110, Method: Compositional matrix adjust. Identities = 237/361 (66%), Positives = 268/361 (75%), Gaps = 22/361 (6%) Query 1 MPSIPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPA 60 MPSIPQSLLWISLVVLWLFVLVPMLISKRD VRR SDVALATRVLNG AGARLLKRGGPA Sbjct 1 MPSIPQSLLWISLVVLWLFVLVPMLISKRDVVRRISDVALATRVLNGVAGARLLKRGGPA 60 Query 61 AGHRWGYLPPEGQGDDPDWKPEEDWRDDPVEDGFADVEHDI--DEDQEADDARRRGAVVM 118 GHR D +W+ +EDWR +PV+ FAD + DI ++DQ DD +R VVM Sbjct 61 TGHR----------SDHNWELDEDWRQNPVDGEFADADQDIGEEQDQNVDDTQRTRPVVM 110 Query 119 KVAAPQTAGADEPDYLDVDVVEEDSEALPVGAGAAVGESADEADAEAADGVAGHADPEAD 178 +VA + G D YLDVDVVE DS ALP+ A V ES A G G EA+ Sbjct 111 EVAVAELTGTD---YLDVDVVE-DSVALPIEDSADVTESV-----LLAVGEGGSPGEEAE 161 Query 179 PVEYEYE-YEYVEDTCGLELEEDDQEAPPTVASGTSRRRRFDTKTAAAVSARKYTFRKRA 237 + + + Y YV+ + GL LE+ D ++P VA SR+RR+DTKTA AVSARKY FRKR Sbjct 162 AEQRQSDRYGYVDASSGLGLEQKDDKSPVPVAPTVSRQRRYDTKTATAVSARKYAFRKRV 221 Query 238 LIVMAVILVGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTRIEEKVRRRRMQRIAR 297 L+VMA+ILVGSAAAAFE+ AWWICGS+T VTVLYLAYLRRQTRIEEKVR RRM RIAR Sbjct 222 LMVMAIILVGSAAAAFEVDSNAWWICGSSTTVTVLYLAYLRRQTRIEEKVRSRRMHRIAR 281 Query 298 ARLGVENTRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHLESAAPIRNYGWPRDLPRAVG 357 AR+ VEN DRE+DVVPSRLRRPGAVVLEIDDEDPIF HL+ PIR +GWPRDLPRAVG Sbjct 282 ARVDVENAHDREFDVVPSRLRRPGAVVLEIDDEDPIFEHLDYEMPIRTFGWPRDLPRAVG 341 Query 358 Q 358 Q Sbjct 342 Q 342 >gi|240169337|ref|ZP_04747996.1| hypothetical protein MkanA1_08491 [Mycobacterium kansasii ATCC 12478] Length=381 Score = 395 bits (1015), Expect = 5e-108, Method: Compositional matrix adjust. Identities = 249/391 (64%), Positives = 280/391 (72%), Gaps = 43/391 (10%) Query 1 MPSIPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPA 60 MPSIPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGA ARLLKR GPA Sbjct 1 MPSIPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGASARLLKRTGPA 60 Query 61 AGHRWGYLPPEGQGDDPDWKPEEDWRDDPVEDGFADVE------HDIDEDQE-ADDARRR 113 AGHR DP WKPE+DW +PV D E HD+ D E ADD R Sbjct 61 AGHR----------SDPHWKPEDDWGHEPVGQAEDDAEQDTAPVHDVARDAEVADDVSRP 110 Query 114 GAVVMKVA---APQTAGADEPDYLDVDVVEEDSEALPVGAGAAVGE-------------- 156 GAVV+K A + D PDYLDV+VVEE + ALPVG A + E Sbjct 111 GAVVLKAGDARAARGTEVDRPDYLDVEVVEETAGALPVGDSAQMAEPTPLSVDGRSAVDE 170 Query 157 ------SADEADAEAADGVAGHADPEADPVEYEYEYEYVEDTCGLELEED---DQEAPPT 207 +ADE++ + A+ A A + EYEYVED+ GLE ED D +AP + Sbjct 171 PAVDDDTADESELDTAELFAVRAGDRERAERADDEYEYVEDSSGLEPPEDPQDDHDAPAS 230 Query 208 VASGTSRRRRFDTKTAAAVSARKYTFRKRALIVMAVILVGSAAAAFELTPVAWWICGSAT 267 G SRRRRFDTKTAAAVSARKY FRKR L+ MA++LVGSA AAFE+TP+AWW+CG+AT Sbjct 231 FIPGASRRRRFDTKTAAAVSARKYAFRKRMLMAMALVLVGSAVAAFEVTPLAWWLCGTAT 290 Query 268 GVTVLYLAYLRRQTRIEEKVRRRRMQRIARARLGVENTRDREYDVVPSRLRRPGAVVLEI 327 VTVLYLAYLRRQTRIEEKVRRRRM R+ARAR+GVEN DR+YDVVPSRLRRPGAVVLEI Sbjct 291 AVTVLYLAYLRRQTRIEEKVRRRRMHRMARARVGVENAHDRDYDVVPSRLRRPGAVVLEI 350 Query 328 DDEDPIFTHLESAAPIRNYGWPRDLPRAVGQ 358 DDEDPIF HL++A P+R+YGW RDLPRAVGQ Sbjct 351 DDEDPIFEHLDNAVPMRHYGWSRDLPRAVGQ 381 >gi|118619761|ref|YP_908093.1| hypothetical protein MUL_4690 [Mycobacterium ulcerans Agy99] gi|118571871|gb|ABL06622.1| conserved hypothetical transmembrane protein [Mycobacterium ulcerans Agy99] Length=392 Score = 377 bits (968), Expect = 2e-102, Method: Compositional matrix adjust. Identities = 242/404 (60%), Positives = 276/404 (69%), Gaps = 58/404 (14%) Query 1 MPSIPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPA 60 MPSIPQSLLWISLVVLWLFVLVPMLISKR+AVRRTSDVALATRVLNGGA +RL+KRGGPA Sbjct 1 MPSIPQSLLWISLVVLWLFVLVPMLISKREAVRRTSDVALATRVLNGGASSRLVKRGGPA 60 Query 61 AGHRWGYLPPEGQGDDPDWKPEEDWRDD------------PVEDGFADVEHDIDEDQEAD 108 AGHR DPDWK + +W + P D ++ H +D+ A Sbjct 61 AGHR----------SDPDWKRQREWDHEAHDDDDDEDDAEPETDQIPELAHG--DDEVAQ 108 Query 109 DARRRGAVVMKVAAPQTAGADEPDYLDVDVVEEDSEALPVG--------------AGAAV 154 D +GAV+MKVAA + DEPDYLDVDVVEEDS L +G AG AV Sbjct 109 DTGSQGAVIMKVAATRDTAVDEPDYLDVDVVEEDSGVLCLGPGARSAQEQPMARAAGTAV 168 Query 155 GESADEADAEAADGVAGHADPE-----------------ADPVEYEYEYEYVEDTCGLEL 197 E+ + + E D +PE A+ E +YEY++DT GLE Sbjct 169 PEAELDGEEEPVDESQLGDEPELADDSELDTAELFAARAANHEHAEDDYEYMDDTSGLEA 228 Query 198 EEDDQEA---PPTVASGTSRRRRFDTKTAAAVSARKYTFRKRALIVMAVILVGSAAAAFE 254 + D +E P SG SRRRR+DTKTAAAVSARKY FRKR L+ MAV+LVGSA AAFE Sbjct 229 QADGEEGYEPTPRYTSGASRRRRYDTKTAAAVSARKYAFRKRMLVAMAVVLVGSAIAAFE 288 Query 255 LTPVAWWICGSATGVTVLYLAYLRRQTRIEEKVRRRRMQRIARARLGVENTRDREYDVVP 314 +T AWW+C +AT VT+LYLAYLRRQTRIE KVRRRRMQR ARARLGVENT DR+YDVVP Sbjct 289 VTAAAWWLCSAATVVTMLYLAYLRRQTRIEAKVRRRRMQRQARARLGVENTHDRDYDVVP 348 Query 315 SRLRRPGAVVLEIDDEDPIFTHLESAAPIRNYGWPRDLPRAVGQ 358 SRLRRPGAVVLEIDDEDPIF HL+ A P+R YGWPRDLPRAVGQ Sbjct 349 SRLRRPGAVVLEIDDEDPIFEHLDYAGPVRGYGWPRDLPRAVGQ 392 >gi|336461399|gb|EGO40270.1| hypothetical protein MAPs_31400 [Mycobacterium avium subsp. paratuberculosis S397] Length=348 Score = 370 bits (951), Expect = 1e-100, Method: Compositional matrix adjust. Identities = 243/375 (65%), Positives = 271/375 (73%), Gaps = 44/375 (11%) Query 1 MPSIPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPA 60 MPSIPQSLLWISLVVLWLFVLVPML+SKRDAVRRTSDVALATRVLNGGA +RL+KRGGPA Sbjct 1 MPSIPQSLLWISLVVLWLFVLVPMLVSKRDAVRRTSDVALATRVLNGGANSRLVKRGGPA 60 Query 61 AGHRWGYLPPEGQGDDPDWKPEEDWRDDPVEDGFADVEHDIDEDQ--------EADDARR 112 AGHR DP W ED D D EHD+ D+ + D+ R Sbjct 61 AGHR----------SDPHWTRPED------SDADLDEEHDVAADEPGDQDDDADTDELSR 104 Query 113 RGAVVMKVAAPQTAGADEPDYLDVDVVEEDSEALPVGAGAAVGESADEADAEAAD----G 168 R VVM++A TA EPDYLDVDVVE DS ALPVGA + E+ DE AE D Sbjct 105 RRPVVMRMA---TAEPAEPDYLDVDVVE-DSAALPVGARGSAAENNDEQPAEDDDVDTEA 160 Query 169 VAGHADPEADPVEYEYEYEYVEDTCGLEL-----EEDDQEAPPTVASGTSRRRRFDTKTA 223 VA D E D YEYV+D+ GLE +E D+EAP + SRRRRFDTKTA Sbjct 161 VAKGGD-EQD------SYEYVDDSSGLEEPAAEGDEADEEAPAPMPRNASRRRRFDTKTA 213 Query 224 AAVSARKYTFRKRALIVMAVILVGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTRI 283 AAVSARKY FRKR L+ MAV+LVGSA AAF+++P AWW+CG+AT VT+LYL YLRRQTRI Sbjct 214 AAVSARKYAFRKRVLMAMAVVLVGSATAAFKISPTAWWVCGAATTVTLLYLGYLRRQTRI 273 Query 284 EEKVRRRRMQRIARARLGVENTRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHLESAAPI 343 EEKVRRRRMQR+ARARLGVEN REYDVVPSRLRRPGAVVLEIDDEDPIF HLE A P+ Sbjct 274 EEKVRRRRMQRMARARLGVENAYAREYDVVPSRLRRPGAVVLEIDDEDPIFEHLEYAMPM 333 Query 344 RNYGWPRDLPRAVGQ 358 R +GWPRDLPRAVG+ Sbjct 334 RTFGWPRDLPRAVGE 348 >gi|183984488|ref|YP_001852779.1| hypothetical protein MMAR_4518 [Mycobacterium marinum M] gi|183177814|gb|ACC42924.1| conserved hypothetical transmembrane protein [Mycobacterium marinum M] Length=392 Score = 368 bits (945), Expect = 6e-100, Method: Compositional matrix adjust. Identities = 245/407 (61%), Positives = 276/407 (68%), Gaps = 64/407 (15%) Query 1 MPSIPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPA 60 MPSIPQSLLWISLVVLWLFVLVPMLISKR+AVRRTSDVALATRVLNGGA +RL+KRGGPA Sbjct 1 MPSIPQSLLWISLVVLWLFVLVPMLISKREAVRRTSDVALATRVLNGGASSRLVKRGGPA 60 Query 61 AGHRWGYLPPEGQGDDPDWKPEEDWRDDPVEDG------------FADVEHDIDEDQEAD 108 AGHR DPDWK + DW + +D ++ H +D+ A Sbjct 61 AGHR----------SDPDWKHQRDWDHEAHDDDDDEDDAEPETDQIPELAHG--DDEVAQ 108 Query 109 DARRRGAVVMKVAAPQTAGADEPDYLDVDVVEEDSEALPVGAGAAVGESADEADAEAADG 168 D +GAV+MKVAA + A DEPDYLDVDVVEEDS L +G GA SA E A G Sbjct 109 DTGSQGAVIMKVAATRDAAVDEPDYLDVDVVEEDSGVLCLGPGA---RSAQEQPTPRAAG 165 Query 169 VA---GHADPEADPVE-------------------------------YEYEYEYVEDTCG 194 A D E +PV+ E +YEY++DT G Sbjct 166 TAVTDAELDGEEEPVDEPQLADEPELADDSELDTAELFAARAANHEHAEDDYEYMDDTSG 225 Query 195 LELEEDDQEA---PPTVASGTSRRRRFDTKTAAAVSARKYTFRKRALIVMAVILVGSAAA 251 L + DD+E P SG SRRRR+DTKTAAAVSARKY FRKR L+ MAV+LVGSA A Sbjct 226 LAAQADDEEGYEPTPRYTSGASRRRRYDTKTAAAVSARKYAFRKRMLVAMAVVLVGSAIA 285 Query 252 AFELTPVAWWICGSATGVTVLYLAYLRRQTRIEEKVRRRRMQRIARARLGVENTRDREYD 311 AFE+T AWW+C +AT VT+LYLAYLRRQTRIE KVRRRRMQR ARARLGVENT DR+YD Sbjct 286 AFEVTAAAWWLCSAATVVTMLYLAYLRRQTRIEAKVRRRRMQRQARARLGVENTHDRDYD 345 Query 312 VVPSRLRRPGAVVLEIDDEDPIFTHLESAAPIRNYGWPRDLPRAVGQ 358 VVPSRLRRPGAVVLEIDDEDPIF HL+ A P+R YGWPRDLPRAVGQ Sbjct 346 VVPSRLRRPGAVVLEIDDEDPIFEHLDYAGPVRGYGWPRDLPRAVGQ 392 >gi|118463118|ref|YP_880358.1| hypothetical protein MAV_1105 [Mycobacterium avium 104] gi|118164405|gb|ABK65302.1| conserved hypothetical protein [Mycobacterium avium 104] Length=335 Score = 368 bits (945), Expect = 7e-100, Method: Compositional matrix adjust. Identities = 228/362 (63%), Positives = 259/362 (72%), Gaps = 44/362 (12%) Query 14 VVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPAAGHRWGYLPPEGQ 73 +VLWLFVLVPML+SKRDAVRRTSDVALATRVLNGGA +RL+KRGGPAAGHR Sbjct 1 MVLWLFVLVPMLVSKRDAVRRTSDVALATRVLNGGANSRLVKRGGPAAGHR--------- 51 Query 74 GDDPDWKPEEDWRDDPVEDGFADVEHDIDEDQ--------EADDARRRGAVVMKVAAPQT 125 DP W ED D D EHD+ D+ + D+ RR VVM++A + Sbjct 52 -SDPHWTRPED------SDADLDEEHDVAADEPGDQDDDADTDELSRRRPVVMRMATAEP 104 Query 126 AGADEPDYLDVDVVEEDSEALPVGAGAAVGESADEADAEAAD----GVAGHADPEADPVE 181 A EPDYLDVDVVE DS ALPVGA + E+ DE AE D VA D E D Sbjct 105 A---EPDYLDVDVVE-DSAALPVGASGSAAENNDEQPAEDDDVDTEAVAKGGD-EQD--- 156 Query 182 YEYEYEYVEDTCGLEL-----EEDDQEAPPTVASGTSRRRRFDTKTAAAVSARKYTFRKR 236 YEYV+D+ GLE +E D+EAP + SRRRRFDTKTAAAVSARKY FRKR Sbjct 157 ---SYEYVDDSSGLEEPAAEGDEADEEAPAPMPRNASRRRRFDTKTAAAVSARKYAFRKR 213 Query 237 ALIVMAVILVGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTRIEEKVRRRRMQRIA 296 L+ MAV+LVGSA AAF+++P AWW+CG+AT VT+LYL YLRRQTRIEEKVRRRRMQR+A Sbjct 214 VLMAMAVVLVGSATAAFKISPTAWWVCGAATTVTLLYLGYLRRQTRIEEKVRRRRMQRMA 273 Query 297 RARLGVENTRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHLESAAPIRNYGWPRDLPRAV 356 RARLGVEN DR+YDVVPSRLRRPGAVVLEIDDEDPIF HLE A P+R +GWPRDLPRAV Sbjct 274 RARLGVENAYDRDYDVVPSRLRRPGAVVLEIDDEDPIFEHLEYAMPMRTFGWPRDLPRAV 333 Query 357 GQ 358 G+ Sbjct 334 GE 335 >gi|41407025|ref|NP_959861.1| hypothetical protein MAP0927 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395376|gb|AAS03244.1| hypothetical protein MAP_0927 [Mycobacterium avium subsp. paratuberculosis K-10] Length=373 Score = 367 bits (943), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 241/375 (65%), Positives = 270/375 (72%), Gaps = 44/375 (11%) Query 1 MPSIPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPA 60 MPSIPQSLLWISLVVLWLFVLVPML+SKRDAVRRTSDVALATRVLNGGA +RL+KRGGPA Sbjct 26 MPSIPQSLLWISLVVLWLFVLVPMLVSKRDAVRRTSDVALATRVLNGGANSRLVKRGGPA 85 Query 61 AGHRWGYLPPEGQGDDPDWKPEEDWRDDPVEDGFADVEHDIDEDQ--------EADDARR 112 AGHR DP W ED D D EHD+ D+ + D+ R Sbjct 86 AGHR----------SDPHWTRPED------SDADLDEEHDVAADEPGDQDDDADTDELSR 129 Query 113 RGAVVMKVAAPQTAGADEPDYLDVDVVEEDSEALPVGAGAAVGESADEADAEAAD----G 168 R VVM++A TA EPDYLDVDVVE DS ALPVGA + E+ DE AE D Sbjct 130 RRPVVMRMA---TAEPAEPDYLDVDVVE-DSAALPVGARGSAAENNDEQPAEDDDVDTEA 185 Query 169 VAGHADPEADPVEYEYEYEYVEDTCGLEL-----EEDDQEAPPTVASGTSRRRRFDTKTA 223 VA D E D YEYV+D+ GLE +E D+EAP + SRRRRFDTKTA Sbjct 186 VAKGGD-EQD------SYEYVDDSSGLEEPAAEGDEADEEAPAPMPRNASRRRRFDTKTA 238 Query 224 AAVSARKYTFRKRALIVMAVILVGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTRI 283 A+SARKY FRKR L+ MAV+LVGSA AAF+++P AWW+CG+AT VT+LYL YLRRQTRI Sbjct 239 IAISARKYAFRKRVLMAMAVVLVGSATAAFKISPTAWWVCGAATTVTLLYLGYLRRQTRI 298 Query 284 EEKVRRRRMQRIARARLGVENTRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHLESAAPI 343 EEKVRRRRMQR+ARARLGVEN REYDVVPSRLRRPGAVVLEIDDEDPIF HLE A P+ Sbjct 299 EEKVRRRRMQRMARARLGVENAYAREYDVVPSRLRRPGAVVLEIDDEDPIFEHLEYAMPM 358 Query 344 RNYGWPRDLPRAVGQ 358 R +GWPRDLPRAVG+ Sbjct 359 RTFGWPRDLPRAVGE 373 >gi|254773985|ref|ZP_05215501.1| hypothetical protein MaviaA2_04824 [Mycobacterium avium subsp. avium ATCC 25291] Length=335 Score = 367 bits (943), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 229/362 (64%), Positives = 258/362 (72%), Gaps = 44/362 (12%) Query 14 VVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPAAGHRWGYLPPEGQ 73 +VLWLFVLVPML+SKRDAVRRTSDVALATRVLNGGA +RL+KRGGPAAGHR Sbjct 1 MVLWLFVLVPMLVSKRDAVRRTSDVALATRVLNGGANSRLVKRGGPAAGHR--------- 51 Query 74 GDDPDWKPEEDWRDDPVEDGFADVEHDIDEDQ--------EADDARRRGAVVMKVAAPQT 125 DP W ED D D EHD+ D+ + D+ RR VVM++A T Sbjct 52 -SDPHWTRPED------SDADLDEEHDVAADEPGDQDDDADTDELSRRRPVVMRMA---T 101 Query 126 AGADEPDYLDVDVVEEDSEALPVGAGAAVGESADEADAEAAD----GVAGHADPEADPVE 181 A EPDYLDVDVVE DS ALPVGA + E+ DE AE D VA D E D Sbjct 102 AEPAEPDYLDVDVVE-DSAALPVGASGSAAENNDEQPAEDDDVDTEAVAKGGD-EQD--- 156 Query 182 YEYEYEYVEDTCGLEL-----EEDDQEAPPTVASGTSRRRRFDTKTAAAVSARKYTFRKR 236 YEYV+D+ GLE +E D+EAP + SRRRRFDTKTAAAVSARKY FRKR Sbjct 157 ---SYEYVDDSSGLEEPAAEGDEADEEAPAPMPRNASRRRRFDTKTAAAVSARKYAFRKR 213 Query 237 ALIVMAVILVGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTRIEEKVRRRRMQRIA 296 L+ MAV+LVGSA AAF+++P AWW+CG+AT VT+LYL YLRRQTRIEEKVRRRRMQR+A Sbjct 214 VLMAMAVVLVGSATAAFKISPTAWWVCGAATTVTLLYLGYLRRQTRIEEKVRRRRMQRMA 273 Query 297 RARLGVENTRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHLESAAPIRNYGWPRDLPRAV 356 RARLGVEN REYDVVPSRLRRPGAVVLEIDDEDPIF HLE A P+R +GWPRDLPRAV Sbjct 274 RARLGVENAYAREYDVVPSRLRRPGAVVLEIDDEDPIFEHLEYAMPMRTFGWPRDLPRAV 333 Query 357 GQ 358 G+ Sbjct 334 GE 335 >gi|254823436|ref|ZP_05228437.1| hypothetical protein MintA_26136 [Mycobacterium intracellulare ATCC 13950] Length=364 Score = 364 bits (934), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 235/374 (63%), Positives = 268/374 (72%), Gaps = 40/374 (10%) Query 1 MPSIPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPA 60 MPSIPQSLLWISLVVLWLFVLVPML+SKRDAVRRTSDVALATRVLNGGA +RL+KR GPA Sbjct 15 MPSIPQSLLWISLVVLWLFVLVPMLVSKRDAVRRTSDVALATRVLNGGANSRLIKRSGPA 74 Query 61 AGHRWGYLPPEGQGDDPDWKPEEDWRDDPVEDGFADVEHDIDED---------QEADDAR 111 AGHR DPDW+P ED D + D EHD+ E+ + D+ Sbjct 75 AGHR----------SDPDWQPPEDSADTDL-----DEEHDLAENGDDRETDDDADTDELS 119 Query 112 RRGAVVMKVAAPQTAGADEPDYLDVDVVEEDSEALPVGAGAAVGESADEADAEA---ADG 168 RR VVMK+A + A ADEPDYLDVDVVE DS ALPVGA + E DE AE + Sbjct 120 RRRPVVMKMAVTEPAEADEPDYLDVDVVE-DSAALPVGASDSAAEDVDEEPAEDDVDTEA 178 Query 169 VAGHADPEADPVEYEYEYEYVEDTCGLELEEDDQEAPPT----VASGTSRRRRFDTKTAA 224 VA H D E YEYVED+ GLE +D + + +RRRR D KTAA Sbjct 179 VAKHDD--------EDRYEYVEDSSGLEPPAEDADDDDEVPAPMPRSAARRRRLDAKTAA 230 Query 225 AVSARKYTFRKRALIVMAVILVGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTRIE 284 AVSARKY FRK+ L+VMA+ L+GSA AAF+++P AWW+CGSA G+T+LYL YLRRQTRIE Sbjct 231 AVSARKYAFRKKVLMVMALGLIGSATAAFKISPSAWWVCGSAIGITLLYLGYLRRQTRIE 290 Query 285 EKVRRRRMQRIARARLGVENTRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHLESAAPIR 344 EKVRRRR QR+ARARLGVEN DREYDVVPSRLRRPGAVVLEIDDEDP+F HL+ A +R Sbjct 291 EKVRRRRAQRMARARLGVENAYDREYDVVPSRLRRPGAVVLEIDDEDPVFEHLDYAMAMR 350 Query 345 NYGWPRDLPRAVGQ 358 YGWPRDLPRAVG+ Sbjct 351 TYGWPRDLPRAVGE 364 >gi|296169803|ref|ZP_06851417.1| conserved transmembrane protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895480|gb|EFG75180.1| conserved transmembrane protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=337 Score = 362 bits (930), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 229/361 (64%), Positives = 266/361 (74%), Gaps = 27/361 (7%) Query 1 MPSIPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPA 60 MPSIPQSLLWISLVVLWLFVLVPML+SKRDAVRRTSDVALATRVLNGGA +RL+KR GPA Sbjct 1 MPSIPQSLLWISLVVLWLFVLVPMLVSKRDAVRRTSDVALATRVLNGGANSRLIKRSGPA 60 Query 61 AGHRWGYLPPEGQGDDPDWKPEEDWRDDPVEDGFADVEHDIDEDQEADDARRRGAVVMKV 120 AGHR DP+W P E+ + + D+ DE+ + ++ R VVMK+ Sbjct 61 AGHR----------SDPNWTPPEESAESEL-----DLPEGEDEEHDTEELRAARPVVMKL 105 Query 121 AAPQTAGADEPDYLDVDVVEEDSEALPVGAGAAVGESADEADAEAADGVAGHADPEADPV 180 A P+ EPDYLDVDVVE DS+ALP G V E +E + D VA E D Sbjct 106 ATPERT---EPDYLDVDVVE-DSQALPAGVAEVVEEEDEEDEDSDTDVVAQAGSDEDD-- 159 Query 181 EYEYEYEYVEDTCGLELE---EDDQEAPPTVASGTSRRRRFDTKTAAAVSARKYTFRKRA 237 +EYVED+ GLE E +DD+E P + SRRRRFD KTAAAVSARKY FRKR Sbjct 160 ---EGFEYVEDSSGLEPEADADDDEEMPAPIPRNASRRRRFDAKTAAAVSARKYQFRKRM 216 Query 238 LIVMAVILVGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTRIEEKVRRRRMQRIAR 297 L+ MAV+LVGSA AAF+++P AWW+CG+AT VT+LYL YLRRQTRIEEKVRRRRMQR+AR Sbjct 217 LMAMAVVLVGSATAAFKVSPSAWWVCGTATAVTLLYLGYLRRQTRIEEKVRRRRMQRMAR 276 Query 298 ARLGVENTRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHLESAAPIRNYGWPRDLPRAVG 357 AR+GVEN DR+YDVVPSRLRRPGAVVLEIDDEDPIF HL+ A P+R +GWPRDLPRAVG Sbjct 277 ARMGVENAYDRDYDVVPSRLRRPGAVVLEIDDEDPIFEHLDYAMPMRTFGWPRDLPRAVG 336 Query 358 Q 358 + Sbjct 337 E 337 >gi|289761130|ref|ZP_06520508.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|289708636|gb|EFD72652.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] Length=226 Score = 358 bits (920), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 182/183 (99%), Positives = 183/183 (100%), Gaps = 0/183 (0%) Query 1 MPSIPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPA 60 MPSIPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPA Sbjct 34 MPSIPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPA 93 Query 61 AGHRWGYLPPEGQGDDPDWKPEEDWRDDPVEDGFADVEHDIDEDQEADDARRRGAVVMKV 120 AGHRWGYLPPEGQGDDPDWKPEEDWRDDPVEDGFADVEHDIDEDQEADDARRRGAVVMKV Sbjct 94 AGHRWGYLPPEGQGDDPDWKPEEDWRDDPVEDGFADVEHDIDEDQEADDARRRGAVVMKV 153 Query 121 AAPQTAGADEPDYLDVDVVEEDSEALPVGAGAAVGESADEADAEAADGVAGHADPEADPV 180 AAPQTAGADEPDYLDVDVVEEDSEALPVGAGAAVGESADEADAEAADGVAGHADPEADPV Sbjct 154 AAPQTAGADEPDYLDVDVVEEDSEALPVGAGAAVGESADEADAEAADGVAGHADPEADPV 213 Query 181 EYE 183 EY+ Sbjct 214 EYD 216 >gi|342860590|ref|ZP_08717241.1| hypothetical protein MCOL_16986 [Mycobacterium colombiense CECT 3035] gi|342132245|gb|EGT85486.1| hypothetical protein MCOL_16986 [Mycobacterium colombiense CECT 3035] Length=345 Score = 343 bits (879), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 213/376 (57%), Positives = 245/376 (66%), Gaps = 62/376 (16%) Query 14 VVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPAAGHRWGYLPPEGQ 73 +VLWLFVLVPML+SKRDAVRRTSDVALATRVLNGG +RL+KR GPAAGHR Sbjct 1 MVLWLFVLVPMLVSKRDAVRRTSDVALATRVLNGGGNSRLIKRSGPAAGHR--------- 51 Query 74 GDDPDWKPEEDWRDDPVEDGFADVEHDIDEDQEADDA------------------RRRGA 115 DPDW P E+ D D D+E D A RR Sbjct 52 -SDPDWTPPEE-------------SADTDLDEERDLAEDEDRDHEADDDADTDELSRRRP 97 Query 116 VVMKVAAPQTAGADEPDYLDVDVVEEDSEALPVGAGAAVGE---------SADEADAEAA 166 VVM++A A EPDYLDVDVVE DS LP GA + E DEAD EA Sbjct 98 VVMRMATADPAEPTEPDYLDVDVVE-DSHVLPAGASGSAAEPETAGIEPVEEDEADTEAV 156 Query 167 DGVAGHADPEADPVEYEYEYEYVEDTCGLELEEDDQEAPPT----VASGTSRRRRFDTKT 222 D EA E E YEYVED+ GLE + +A + SRRRRFD KT Sbjct 157 ----AKRDDEA---EDEDGYEYVEDSSGLEPAAEADDADEEAPAPMPRNASRRRRFDNKT 209 Query 223 AAAVSARKYTFRKRALIVMAVILVGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTR 282 AAAVSARKY FRK+ L+VMA +LVGSA AAF+++P AWW+CG+AT +T++YL YLRRQTR Sbjct 210 AAAVSARKYAFRKKVLLVMAFVLVGSATAAFKISPTAWWVCGTATAITLMYLGYLRRQTR 269 Query 283 IEEKVRRRRMQRIARARLGVENTRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHLESAAP 342 IEEKVR RRM+R+ARARLGVEN DR+YDVVPSRLRRPGAVVLEIDDEDP+F HL+ A Sbjct 270 IEEKVRNRRMKRMARARLGVENAYDRDYDVVPSRLRRPGAVVLEIDDEDPVFEHLDYAMA 329 Query 343 IRNYGWPRDLPRAVGQ 358 +R +GWPRDLPRAVG+ Sbjct 330 MRTFGWPRDLPRAVGE 345 >gi|126437230|ref|YP_001072921.1| hypothetical protein Mjls_4665 [Mycobacterium sp. JLS] gi|126237030|gb|ABO00431.1| conserved hypothetical protein [Mycobacterium sp. JLS] Length=347 Score = 290 bits (741), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 217/376 (58%), Positives = 251/376 (67%), Gaps = 47/376 (12%) Query 1 MPSIPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPA 60 MPSIPQSLLWISLVVLWLFVLVPML+SKR+AVRRTSDVALATRVLN G ARLL+R GPA Sbjct 1 MPSIPQSLLWISLVVLWLFVLVPMLVSKREAVRRTSDVALATRVLNSGQSARLLRRSGPA 60 Query 61 AGHRWGYLPPEGQGDDPDWKPEEDWRDD-PVEDGFADVEHDIDEDQEADDARRRGAVVMK 119 AGH DPDW+P D DD PV+D ++ DA GAVV+ Sbjct 61 AGHH----------SDPDWRPSADELDDEPVDD------------RDTRDAEPEGAVVL- 97 Query 120 VAAPQTAGADEPDYLDVDVVEEDSEALPVGAGA----------AVG------ESADEADA 163 AAPQ EPDYLDVD+VEEDS ALP+G+ A A G E D+ D Sbjct 98 AAAPQRDA--EPDYLDVDIVEEDSGALPIGSAADQPFEDILPTAAGAPEFDAELEDDVDD 155 Query 164 EAADGVAGHADPEADPVEYEYEYEYVEDTCGLELEEDDQEAPPTV-ASGTSRRRRFDTKT 222 E D A D E+ E EYEYV D+ G+E DD+ A P A G +RRRR+++KT Sbjct 156 ETDDVAAESDDAESVDDGTEDEYEYVPDSSGIETPADDERAEPAGDALGAARRRRYESKT 215 Query 223 AAAVSARKYTFRKRALIVMAVILVGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTR 282 A AVSARKY FRKR + MAV L+ SA AA+ + P AWW+CG+ VTVLYL YLRRQTR Sbjct 216 AEAVSARKYLFRKRMVTSMAVALLASAVAAYLVAPWAWWLCGAVGAVTVLYLGYLRRQTR 275 Query 283 IEEKVRRRRMQRIARARLGVENTRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHLESAAP 342 IEE+VRRRR QR+ R+RLGVENT D E DVVP+RLRRPGA VLEIDDEDPIF HL+ A Sbjct 276 IEEQVRRRRAQRVRRSRLGVENTEDPELDVVPARLRRPGAAVLEIDDEDPIFEHLDEVAF 335 Query 343 IRNYGWPRDLPRAVGQ 358 R++ DLP+A GQ Sbjct 336 ARHF----DLPKAAGQ 347 >gi|108801251|ref|YP_641448.1| hypothetical protein Mmcs_4287 [Mycobacterium sp. MCS] gi|119870402|ref|YP_940354.1| hypothetical protein Mkms_4373 [Mycobacterium sp. KMS] gi|108771670|gb|ABG10392.1| conserved hypothetical protein [Mycobacterium sp. MCS] gi|119696491|gb|ABL93564.1| conserved hypothetical protein [Mycobacterium sp. KMS] Length=347 Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 209/375 (56%), Positives = 249/375 (67%), Gaps = 45/375 (12%) Query 1 MPSIPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPA 60 MPSIPQSLLWISLVVLWLFVLVPML+SKR+AVRRTSDVALATRVLN G ARLL+R GPA Sbjct 1 MPSIPQSLLWISLVVLWLFVLVPMLVSKREAVRRTSDVALATRVLNSGQSARLLRRSGPA 60 Query 61 AGHRWGYLPPEGQGDDPDWKPEEDWRDDPVEDGFADVEHDIDEDQEADDARRRGAVVMKV 120 AGH DPDW+P +++ + +D++ DA GAVV+ Sbjct 61 AGHH----------SDPDWRP-----------SADELDDEPLDDRDTRDAEPEGAVVL-A 98 Query 121 AAPQTAGADEPDYLDVDVVEEDSEALPVG--------------AGAAVGESADEADAEAA 166 AAPQ EPDYLDVD+VEEDS ALP+G AGA ++ E D + Sbjct 99 AAPQRDT--EPDYLDVDIVEEDSGALPIGSAADQPFEDILPTAAGAPEFDAEPEDDVDDE 156 Query 167 DGVAGHADPEADPVE--YEYEYEYVEDTCGLELEEDDQEAPPTV-ASGTSRRRRFDTKTA 223 +A+ V+ E EYEYV D+ G+E DD+ A P A G +RRRR+++KTA Sbjct 157 TDDVAADSDDAESVDDGTEDEYEYVPDSSGIETPADDERAEPADDALGAARRRRYESKTA 216 Query 224 AAVSARKYTFRKRALIVMAVILVGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTRI 283 AVSARKY FRKR + MAV L+ SA AA+ + P AWW+CG+ VTVLYL YLRRQTRI Sbjct 217 EAVSARKYLFRKRMVTSMAVALLASAVAAYLVAPWAWWLCGAVGAVTVLYLGYLRRQTRI 276 Query 284 EEKVRRRRMQRIARARLGVENTRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHLESAAPI 343 EE+VRRRR QRI R+RLGVENT D E DVVP+RLRRPGA VLEIDDEDPIF HL+ A Sbjct 277 EEQVRRRRAQRIRRSRLGVENTEDPELDVVPARLRRPGAAVLEIDDEDPIFEHLDEVAFA 336 Query 344 RNYGWPRDLPRAVGQ 358 R++ DLP+A GQ Sbjct 337 RHF----DLPKAAGQ 347 >gi|118471114|ref|YP_889706.1| hypothetical protein MSMEG_5468 [Mycobacterium smegmatis str. MC2 155] gi|118172401|gb|ABK73297.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length=384 Score = 270 bits (689), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 208/413 (51%), Positives = 244/413 (60%), Gaps = 84/413 (20%) Query 1 MPSIPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPA 60 MPSIPQSLLWISLVVLWLFVLVPMLISKR++VRRTSDVALATRVLN G A+ L+RG PA Sbjct 1 MPSIPQSLLWISLVVLWLFVLVPMLISKRESVRRTSDVALATRVLNSGRNAQRLRRG-PA 59 Query 61 AGHRWGYLPPEGQGDDPDWKPEEDWRDDPVEDGFADVEHDIDEDQEADDARRRGAVVMKV 120 AGH DP W+P D DD E E + + +R V Sbjct 60 AGH----------NSDPHWRPTPDHLDDEFEAELE-------ETEPSRPPKRAVVVAAAA 102 Query 121 AAPQTAGADEPDYLDVDVVEEDSEALPVGAGAA--------------------------V 154 P EPDYLDVD+VEEDS ALP+GA A + Sbjct 103 TEPA-----EPDYLDVDIVEEDSGALPLGATHAPEIEDVEVVEEVEPADDAQTDQLSLDL 157 Query 155 GESADEADAEAADGVAGH-------------------------ADPEADPVEYEYEYEYV 189 E+ DEA EA + V AD ++D +EYEY V Sbjct 158 DEAGDEAGDEADEAVEEPEPVAEVAEEPEEADEPAAPVDEDDTADDQSDLAAHEYEY--V 215 Query 190 EDTCGLELEEDDQ----EAPPTVASGTSRRRRFDTKTAAAVSARKYTFRKRALIVMAVIL 245 D+ GLE E + + P A +SR+RR ++KTAA VS RKY FRKR L + A+IL Sbjct 216 ADSSGLEEPETEPETAEDEAPAAAMSSSRQRRMESKTAAQVSERKYRFRKRVLALFALIL 275 Query 246 VGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTRIEEKVRRRRMQRIARARLGVENT 305 V SAAAAF +TP AWW+CG+ +TVLYLAYLRRQTRIEE++RRRR QR+ R+RLGVENT Sbjct 276 VASAAAAFLVTPTAWWVCGTTATLTVLYLAYLRRQTRIEEQLRRRRAQRLRRSRLGVENT 335 Query 306 RDREYDVVPSRLRRPGAVVLEIDDEDPIFTHLESAAPIRNYGWPRDLPRAVGQ 358 DR+ DVVP+RLRRPGAVVL+IDDEDPIF HLE R Y DLPRA GQ Sbjct 336 DDRKLDVVPARLRRPGAVVLDIDDEDPIFEHLEYTTFAREY----DLPRASGQ 384 >gi|120405780|ref|YP_955609.1| hypothetical protein Mvan_4830 [Mycobacterium vanbaalenii PYR-1] gi|119958598|gb|ABM15603.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] Length=366 Score = 270 bits (689), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 213/399 (54%), Positives = 242/399 (61%), Gaps = 74/399 (18%) Query 1 MPSIPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPA 60 MPSIPQSLLWISLVVLWLFVLVPMLI+KRDAVRRTSDVALATRVLN GAGARL +RGGPA Sbjct 1 MPSIPQSLLWISLVVLWLFVLVPMLINKRDAVRRTSDVALATRVLNSGAGARLRRRGGPA 60 Query 61 AGHRWGYLPPEGQGDDPDWKPEEDWRDDPVEDGFADVEHDIDEDQEADDARRRGAVVMKV 120 AGHR DPDW+P D+DED + + + V+ V Sbjct 61 AGHR----------SDPDWRPSA---------------SDLDEDLDDVEEKAPSRAVVMV 95 Query 121 AAPQTAGADEPDYLDVDVVEEDSEALPVGAGAAVGESA---------------------- 158 A EPDYLDVDVVE DS A PV AA + A Sbjct 96 AGAAGGADAEPDYLDVDVVE-DSGAQPVAELAADAQQAESVAAESNELTLDFAEADELDD 154 Query 159 -----DEADAEAAD-------GVAGHADPEADPVEYEYE-----YEYVEDTCGLELEEDD 201 DEA AE A+ GV D E + VE EYE YE V+D + D Sbjct 155 APEDRDEAVAEGAERDTAEDTGVYSVIDDEYENVEDEYEDAEGEYEDVDDASE---QGDS 211 Query 202 QEAPPTVASGTS--RRRRFDTKTAAAVSARKYTFRKRALIVMAVILVGSAAAAFELTPVA 259 EA +A S RRRR ++ TAAAVSARKY FR R + VMAV+L+ SA AAF +P Sbjct 212 SEADLRMAESISDARRRRRESTTAAAVSARKYRFRARTIAVMAVLLLASAVAAFTWSPSM 271 Query 260 WWICGSATGVTVLYLAYLRRQTRIEEKVRRRRMQRIARARLGVENTRDREYDVVPSRLRR 319 W+ICG+ VT LYLAYLRRQTRIEE+VRRRR QR+AR+RLGVENT DR++DV PSRLRR Sbjct 272 WYICGAVGTVTALYLAYLRRQTRIEEQVRRRRAQRMARSRLGVENTSDRDFDVTPSRLRR 331 Query 320 PGAVVLEIDDEDPIFTHLESAAPIRNYGWPRDLPRAVGQ 358 PGA VLEIDDEDP F HL+ R+Y DLPRA GQ Sbjct 332 PGAAVLEIDDEDPAFEHLDYVPFSRHY----DLPRAAGQ 366 >gi|145222490|ref|YP_001133168.1| hypothetical protein Mflv_1900 [Mycobacterium gilvum PYR-GCK] gi|145214976|gb|ABP44380.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK] Length=362 Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 198/398 (50%), Positives = 236/398 (60%), Gaps = 76/398 (19%) Query 1 MPSIPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPA 60 MPSIPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLN GA +RL +R GPA Sbjct 1 MPSIPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNSGARSRL-RRRGPA 59 Query 61 AGHRWGYLPPEGQGDDPDWKPEEDWRDDPVEDGFADVEHDIDEDQEADDARRRGAVVMKV 120 AGHR DPDW P +D + D D + +R AVVM Sbjct 60 AGHR----------SDPDWSP-------------SDEDAAADVDVDDVPSR---AVVMVA 93 Query 121 AAPQTAGADEPDYLDVDVVEEDSEALPVGAGAAVGESADEADAEAADGVAGHADPEADPV 180 A + A EPDYLDVDVVE DS ALP+ A E A AE + + D E++PV Sbjct 94 AEGEDANT-EPDYLDVDVVE-DSGALPIADITAEEEVA--PVAENDEVTSTFDDVESEPV 149 Query 181 EYEYEYEYV-------------------------EDTCGLELEEDDQEAPPTVASGTSR- 214 E + ++ ED E E+++Q++ + A G R Sbjct 150 ADEPQERHIRAAAQREDRDTSEDTGVYSVIDDEYEDASDDEYEDENQDSDES-ARGEERA 208 Query 215 --------------RRRFDTKTAAAVSARKYTFRKRALIVMAVILVGSAAAAFELTPVAW 260 RRR ++ TAAAVSARKY FR R + VM+V+++ SA AA + W Sbjct 209 DTDQRVAGSLSESRRRRRESTTAAAVSARKYRFRARTIAVMSVLMLASAVAALTWSSTMW 268 Query 261 WICGSATGVTVLYLAYLRRQTRIEEKVRRRRMQRIARARLGVENTRDREYDVVPSRLRRP 320 + + VT+LYLAYLRRQTRIEE+VRRRR QR+AR+RLGVENT DR+YDV PSRLRRP Sbjct 269 YSTAAVAAVTLLYLAYLRRQTRIEEQVRRRRAQRMARSRLGVENTSDRDYDVTPSRLRRP 328 Query 321 GAVVLEIDDEDPIFTHLESAAPIRNYGWPRDLPRAVGQ 358 GA VLEIDDEDP F HL+ R+Y DLPRA GQ Sbjct 329 GAAVLEIDDEDPEFEHLDYVPFSRHY----DLPRAAGQ 362 >gi|315442937|ref|YP_004075816.1| hypothetical protein Mspyr1_13010 [Mycobacterium sp. Spyr1] gi|315261240|gb|ADT97981.1| hypothetical protein Mspyr1_13010 [Mycobacterium sp. Spyr1] Length=368 Score = 234 bits (596), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 201/405 (50%), Positives = 236/405 (59%), Gaps = 84/405 (20%) Query 1 MPSIPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPA 60 MPSIPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLN GA +RL +R GPA Sbjct 1 MPSIPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNSGARSRL-RRRGPA 59 Query 61 AGHRWGYLPPEGQGDDPDWKPEEDWRDDPVEDGFADVEHDIDEDQEADDARRRGAVVMKV 120 AGHR DPDW P +D + D D + +R AVVM Sbjct 60 AGHR----------SDPDWSP-------------SDEDAAADVDVDDVPSR---AVVMVA 93 Query 121 AAPQTAGADEPDYLDVDVVEEDSEALPVGAGAAVGESADEADAEAADGVAGHADPEADPV 180 A + A EPDYLDVDVVE DS ALP+ A E AE + + D E++PV Sbjct 94 AEGEDANT-EPDYLDVDVVE-DSGALPIADITA--EEVVAPVAENDEVTSTFDDVESEPV 149 Query 181 --------------------------------EYEYEYEYVEDTCGLELEEDDQEAPPTV 208 EYE EY ED E E+++Q++ + Sbjct 150 ADEPQERHIRAAAQREDRDTSEDTGVYSVIDDEYEDGDEY-EDAYDDEYEDENQDSDES- 207 Query 209 ASGTSR---------------RRRFDTKTAAAVSARKYTFRKRALIVMAVILVGSAAAAF 253 A G R RRR ++ TAAAVSARKY FR R + VM+V+++ SA AA Sbjct 208 ARGEERADTDQRVAGSLSESRRRRRESTTAAAVSARKYRFRARTIAVMSVLMLASAVAAL 267 Query 254 ELTPVAWWICGSATGVTVLYLAYLRRQTRIEEKVRRRRMQRIARARLGVENTRDREYDVV 313 + W+ + VT+LYLAYLRRQTRIEE+VRRRR QR+AR+RLGVENT DR+YDV Sbjct 268 TWSSTMWYSTAAVAAVTLLYLAYLRRQTRIEEQVRRRRAQRMARSRLGVENTSDRDYDVT 327 Query 314 PSRLRRPGAVVLEIDDEDPIFTHLESAAPIRNYGWPRDLPRAVGQ 358 PSRLRRPGA VLEIDDEDP F HL+ R+Y DLPRA GQ Sbjct 328 PSRLRRPGAAVLEIDDEDPEFEHLDYVPFSRHY----DLPRAAGQ 368 >gi|169628184|ref|YP_001701833.1| hypothetical protein MAB_1089 [Mycobacterium abscessus ATCC 19977] gi|169240151|emb|CAM61179.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=337 Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 180/365 (50%), Positives = 225/365 (62%), Gaps = 35/365 (9%) Query 1 MPSIPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPA 60 MPSIPQS+LWI LVVLWLFVLVPMLI+KRD V+RTSDVALATRVLNG A A+LL+R GPA Sbjct 1 MPSIPQSVLWIGLVVLWLFVLVPMLINKRDVVKRTSDVALATRVLNGKA-AKLLRRTGPA 59 Query 61 AGHRWGYLPPEGQGDDPDWKPEEDWRDDPVEDGFAD--VEHDIDEDQEADDARRRGAVVM 118 AGHR DPD++ E+ D ++ + + + ED + D AR A+ + Sbjct 60 AGHR----------SDPDFRREDIDELDDEDEEESTGVIASEPSEDDK-DAARAVKAMAV 108 Query 119 KVAAPQTAGADEPDYLDVDVVEEDSEALPVGAGAAVGESADEADAEAADGVAGHADPEAD 178 + P+ + + +DVDVV+ED+ ALP G E D +A +A H E D Sbjct 109 RKVRPEKK-VEADEPVDVDVVDEDATALPAGEATLSDELEDLEEAPSA-----HTGAETD 162 Query 179 PVEYEYEYEYVEDTCGL----ELEEDDQEAPPTVASGTSRRRRFDTKTAAAVSARKYTFR 234 YEYV+DT GL E + +APP +S SRRRRFD + A +ARK+ FR Sbjct 163 ----SGTYEYVDDTSGLAIAAEPSRERHQAPPVYSS--SRRRRFDPEVMAKENARKFAFR 216 Query 235 KRALIVMAVILVGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTRIEEKVRRRRMQR 294 KR L+ + +V + A T AWW+CG ++VLYL YLRRQTRIEE++RRRR R Sbjct 217 KRVLMGLVGAMVVAGLLAATATSTAWWVCGGFGVLSVLYLGYLRRQTRIEEQLRRRRAAR 276 Query 295 IARAR-LGVENTRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHLESAAPIRNYGWPRDLP 353 RAR +GVEN DRE DVVP RLRRPGA VLEIDDEDP+F HL+ R Y +P Sbjct 277 YQRARVVGVENVADRELDVVPQRLRRPGAAVLEIDDEDPVFEHLDYYDEPRQY----RMP 332 Query 354 RAVGQ 358 AVGQ Sbjct 333 HAVGQ 337 >gi|333989584|ref|YP_004522198.1| transmembrane protein [Mycobacterium sp. JDM601] gi|333485552|gb|AEF34944.1| transmembrane protein [Mycobacterium sp. JDM601] Length=375 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 108/175 (62%), Positives = 124/175 (71%), Gaps = 6/175 (3%) Query 184 YEYEYVEDTCGLELEEDDQEAPPTVASGTSRRRRFDTKTAAAVSARKYTFRKRALIVMAV 243 YEYEYVED+ GLE E D + A +R RR+D+ TAAAVSARKY FRKR L+ +AV Sbjct 207 YEYEYVEDSSGLEAEAD------SSAPAAARPRRYDSNTAAAVSARKYEFRKRVLMSLAV 260 Query 244 ILVGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTRIEEKVRRRRMQRIARARLGVE 303 ILV SA AF + P AWW+CG A G TVLYLAYLRRQTRIE++VR RR +R R R E Sbjct 261 ILVLSALTAFTVAPTAWWLCGGAAGATVLYLAYLRRQTRIEQQVRARRARRADRPRARRE 320 Query 304 NTRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHLESAAPIRNYGWPRDLPRAVGQ 358 + ++VVPSRLRRPG VLEIDDEDP+F HLE AA R Y W DLPRA GQ Sbjct 321 SVGAEAFEVVPSRLRRPGVAVLEIDDEDPVFEHLEYAATAREYDWRGDLPRASGQ 375 >gi|229495039|ref|ZP_04388785.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|229317970|gb|EEN83845.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length=244 Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 117/336 (35%), Positives = 155/336 (47%), Gaps = 110/336 (32%) Query 4 IPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPAAGH 63 +P S +WI LV +WLFVLVPML++KR +R+TSD ALATRVL+ G + + GPAAGH Sbjct 1 MPSSFVWIGLVAVWLFVLVPMLVNKRPRIRQTSDAALATRVLHRGDSNPVQR--GPAAGH 58 Query 64 RWGYLPPEGQGDDPDWKPEEDWRDDPVEDGFADVEHDIDEDQEADDARRRGAVVMKVAAP 123 R DP+W+PE PV + D E +D + D A R V Sbjct 59 R----------SDPNWQPE------PVRSSY-DAEDQMDTHADDDYAGGRAPV------- 94 Query 124 QTAGADEPDYLDVDVVEEDSEALPVGAGAAVGESADEADAEAADGVAGHADPEADPVEYE 183 E +PV G G DPEAD + E Sbjct 95 -------------------GEFVPVRRG------------------RGGFDPEADAIARE 117 Query 184 YEYEYVEDT-CGLELEEDDQEAPPTVASGTSRRRRFDTKTAAAVSARKYTFRKRALIVMA 242 Y + + T GL + SG +A Sbjct 118 ARYAFRQRTLLGLAFV--------AILSGA----------------------------LA 141 Query 243 VILVGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTRIEEKVRRRRMQRIARARLGV 302 +I+ F LT +CG Y+AYLRRQ RIE+++RRRR +R+ R+RLGV Sbjct 142 LIISPMVWWLFALT-----VCGLGG-----YMAYLRRQVRIEQEIRRRRTERLNRSRLGV 191 Query 303 ENTRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHLE 338 E+ D E ++P+RLRRPGAVVLE+DDEDP+F HL+ Sbjct 192 ESHTDEELRLIPARLRRPGAVVLEVDDEDPVFDHLD 227 >gi|226307873|ref|YP_002767833.1| hypothetical protein RER_43860 [Rhodococcus erythropolis PR4] gi|226186990|dbj|BAH35094.1| hypothetical membrane protein [Rhodococcus erythropolis PR4] Length=244 Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 118/336 (36%), Positives = 155/336 (47%), Gaps = 110/336 (32%) Query 4 IPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPAAGH 63 +P S +WI LV +WLFVLVPML++KR +R+TSD ALATRVL+ G + + GPAAGH Sbjct 1 MPSSFVWIGLVAVWLFVLVPMLVNKRPRIRQTSDAALATRVLHRGDSNPVQR--GPAAGH 58 Query 64 RWGYLPPEGQGDDPDWKPEEDWRDDPVEDGFADVEHDIDEDQEADDARRRGAVVMKVAAP 123 R DP+W+PE PV + D E +D E D R V Sbjct 59 R----------SDPNWQPE------PVRSSY-DAEDQMDTHAEDDYTGGRAPV------- 94 Query 124 QTAGADEPDYLDVDVVEEDSEALPVGAGAAVGESADEADAEAADGVAGHADPEADPVEYE 183 E +PV G G DPEAD + E Sbjct 95 -------------------GEFVPVRRG------------------RGGFDPEADAIARE 117 Query 184 YEYEYVEDT-CGLELEEDDQEAPPTVASGTSRRRRFDTKTAAAVSARKYTFRKRALIVMA 242 Y + + T GL A + SG +A Sbjct 118 ARYAFRQRTLLGL--------AFVAILSGA----------------------------LA 141 Query 243 VILVGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTRIEEKVRRRRMQRIARARLGV 302 +I+ F LT +CG Y+AYLRRQ RIE+++RRRR +R+ R+RLGV Sbjct 142 LIISPMVWWLFVLT-----VCGLGG-----YMAYLRRQVRIEQEIRRRRTERLNRSRLGV 191 Query 303 ENTRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHLE 338 E+ D E ++P+RLRRPGAVVLE+DDEDP+F HL+ Sbjct 192 ESHTDEELRLIPARLRRPGAVVLEVDDEDPVFDHLD 227 >gi|111022601|ref|YP_705573.1| hypothetical protein RHA1_ro05635 [Rhodococcus jostii RHA1] gi|110822131|gb|ABG97415.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=246 Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 76/175 (44%), Positives = 106/175 (61%), Gaps = 6/175 (3%) Query 170 AGH-ADP--EADPVEYEYEYEYVEDTCGLELEEDDQEAPPTVASGTSRRRR--FDTKTAA 224 AGH +DP + +P Y Y+ E + DT E +E D E P +RR R FD + A Sbjct 56 AGHRSDPYWQPEPDHYGYDAEDLVDTHAEE-DEFDGERAPVGEYVPARRGRGGFDPEADA 114 Query 225 AVSARKYTFRKRALIVMAVILVGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTRIE 284 +Y FR+R+++ + + SAA ++P+ WW + YLAYLRRQ +IE Sbjct 115 IAREARYAFRQRSVLGLVFATIMSAALGLIISPLMWWAFAAGVVGLFGYLAYLRRQVQIE 174 Query 285 EKVRRRRMQRIARARLGVENTRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHLES 339 +++RRRR R+ R+RLGVE+ D E ++P+RLRRPGAVVLE+DDEDP F HLE Sbjct 175 QEIRRRRTARLNRSRLGVESRSDEELRLIPARLRRPGAVVLEVDDEDPEFDHLEH 229 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/81 (56%), Positives = 55/81 (68%), Gaps = 12/81 (14%) Query 4 IPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPAAGH 63 +P S LWI LVV+WLFVLVPML++ R +R+TSD ALATRVL+ G R ++R GPAAGH Sbjct 1 MPNSFLWIGLVVVWLFVLVPMLVNNRPRIRQTSDAALATRVLHRG-DERPVQR-GPAAGH 58 Query 64 RWGYLPPEGQGDDPDWKPEED 84 R DP W+PE D Sbjct 59 R----------SDPYWQPEPD 69 >gi|226365109|ref|YP_002782892.1| hypothetical protein ROP_57000 [Rhodococcus opacus B4] gi|226243599|dbj|BAH53947.1| hypothetical membrane protein [Rhodococcus opacus B4] Length=246 Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 74/174 (43%), Positives = 104/174 (60%), Gaps = 4/174 (2%) Query 170 AGH-ADP--EADPVEYEYEYEYVEDTCGLELEEDDQEAPPTVASGTSRRRR-FDTKTAAA 225 AGH +DP + +P Y Y+ E + DT E + D + AP R R FD + A Sbjct 56 AGHRSDPYWQPEPDHYGYDAEDLVDTHAEEDDFDGERAPVGEYVPVRRGRGGFDPEADAI 115 Query 226 VSARKYTFRKRALIVMAVILVGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTRIEE 285 +Y FR+R+L+ + + SAA ++P+ WW + V Y+AYLRRQ +IE+ Sbjct 116 AREARYGFRQRSLLGLVFATIMSAALGLIISPLMWWAFAAGVAGLVAYMAYLRRQVQIEQ 175 Query 286 KVRRRRMQRIARARLGVENTRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHLES 339 ++RRRR R+ R+RLGVE+ D E ++P+RLRRPGAVVLE+DD DP F HLE Sbjct 176 EIRRRRTARLNRSRLGVESRSDEELRLIPARLRRPGAVVLEVDDGDPEFDHLEH 229 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/106 (49%), Positives = 64/106 (61%), Gaps = 19/106 (17%) Query 4 IPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPAAGH 63 +P S LWI LV++WLFVLVPML++ R +R+TSD ALATRVL+ G R ++R GPAAGH Sbjct 1 MPNSFLWIGLVLVWLFVLVPMLVNNRPRIRQTSDAALATRVLHRG-DERPVQR-GPAAGH 58 Query 64 RWGYLPPEGQGDDPDWKPEEDWRDDPVEDGFADVEHDIDEDQEADD 109 R DP W+PE D G+ D E +D E DD Sbjct 59 R----------SDPYWQPEPD------HYGY-DAEDLVDTHAEEDD 87 >gi|312138625|ref|YP_004005961.1| integral membrane protein [Rhodococcus equi 103S] gi|325676308|ref|ZP_08155987.1| hypothetical protein HMPREF0724_13770 [Rhodococcus equi ATCC 33707] gi|311887964|emb|CBH47276.1| putative integral membrane protein [Rhodococcus equi 103S] gi|325552869|gb|EGD22552.1| hypothetical protein HMPREF0724_13770 [Rhodococcus equi ATCC 33707] Length=275 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 69/148 (47%), Positives = 89/148 (61%), Gaps = 7/148 (4%) Query 218 FDTKTAAAVSARKYTFRKRALIVMAVILVGSAAAAFELTPVAWWICGSATGVTVLYLAYL 277 FD + A A +Y FR+R+++ + + +A A LTPV WW+ YLAYL Sbjct 128 FDPEADAIARAARYQFRQRSVLGLVFASLLTAGLAVALTPVMWWVFALTFVGLGFYLAYL 187 Query 278 RRQTRIEEKVRRRRMQRIARARLGVENTRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHL 337 RRQ +E+ +RRRRM R+ R+RLGVE+ D E +VPSRLRRPGAVVLE+DD DP F HL Sbjct 188 RRQVHMEQAIRRRRMARVGRSRLGVESLSDDELRLVPSRLRRPGAVVLEVDDGDPAFDHL 247 Query 338 ESA-APIRNYGW------PRDLPRAVGQ 358 + A YG+ DL RA GQ Sbjct 248 DYYDAEAAEYGYDDSRYRDEDLRRASGQ 275 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 56/134 (42%), Positives = 73/134 (55%), Gaps = 16/134 (11%) Query 1 MPSIPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPA 60 MPS S++WI+LV +WLFVLVPML+S+R +R+T+D ALATRVL G R + GPA Sbjct 12 MPS--SSIIWIALVAVWLFVLVPMLVSRRPRIRQTTDAALATRVLFQGGAKRTAR--GPA 67 Query 61 AGHRWGYLPPEGQGDDPDWKPEEDWRDDPVEDGFADVEHDIDEDQEADD--ARRRGAVVM 118 AGHR DP+W+P D+ D +D D DD AR RGA Sbjct 68 AGHR----------SDPNWRPAPDFGDTHSDDHHGTDAEDRMNAHADDDPRARDRGAAGE 117 Query 119 KVAAPQTAGADEPD 132 V + G +P+ Sbjct 118 YVPDRRGRGGFDPE 131 >gi|227832664|ref|YP_002834371.1| hypothetical protein cauri_0836 [Corynebacterium aurimucosum ATCC 700975] gi|262182851|ref|ZP_06042272.1| hypothetical protein CaurA7_02558 [Corynebacterium aurimucosum ATCC 700975] gi|227453680|gb|ACP32433.1| putative membrane protein [Corynebacterium aurimucosum ATCC 700975] Length=411 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 107/378 (29%), Positives = 159/378 (43%), Gaps = 57/378 (15%) Query 11 ISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPAAGHR------ 64 I ++VLWLF+L P+L+ + + T + TRVL G + R P G Sbjct 8 ILVIVLWLFILAPLLLRSQRPMSHTGEAFEETRVLFEGDSGSVPGRRKPRLGKEDIRMSS 67 Query 65 ------------WGYLPPEGQGDDPDWKPEEDWRDDPVE--------DGF---------- 94 + + EG +D P E D E DG Sbjct 68 QAEAQAGAEEADYELVEAEGVSEDSQSGPVETAATDAAEQPDVADTIDGEVVEAEDAEED 127 Query 95 ----------ADVEHDIDEDQEADDARRRGAVVMKVAAPQTAGADEPDYLDVDVVEEDSE 144 A+ EHD+D D E+ A V V P A E Y D + Sbjct 128 FELAAEPEHDANKEHDLDNDIES--VESNAAEVFTV--PANASVAEDAYGLDDAYTSPVD 183 Query 145 ALPVGAGAAVGESADEADAEAADGVAGHADPEADPVEYEYEYEYVEDTCGLELEEDDQEA 204 + GA ++G++ ++ +AE DG +PE + + E V +T + E + + Sbjct 184 LMYPGAIDSLGQTPEDFNAEETDGADDAPEPE-ETTAVDGESIDVAETNSADAETNGSDT 242 Query 205 PPTVASGTSRRRRF-----DTKTAAAVSARKYTFRKRALIVMAVILVGSAAAAFELTPVA 259 + +RR D SA +Y R+R LI +AV +V + + Sbjct 243 ELSAEELAFAQRRLGRGGWDPVKEKEASATRYQRRQRTLIGLAVAVVATVCLGIVVGGWT 302 Query 260 WWICGSATGVTVLYLAYLRRQTRIEEKVRRRRMQRIARARLGVENTRDREYDVVPSRLRR 319 WW+ G A VT +YL LR Q R E+++ RRR+ + RARLGV N + + +P LRR Sbjct 303 WWLAGIAGVVTTVYLVALRAQVRREQELLRRRVYHLRRARLGVRNAEN-PAESLPPNLRR 361 Query 320 PGAVVLEIDDEDPIFTHL 337 PGA++LEIDDE P F +L Sbjct 362 PGALILEIDDESPDFDYL 379 >gi|306835640|ref|ZP_07468649.1| conserved hypothetical protein [Corynebacterium accolens ATCC 49726] gi|304568484|gb|EFM44040.1| conserved hypothetical protein [Corynebacterium accolens ATCC 49726] Length=487 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 52/111 (47%), Positives = 67/111 (61%), Gaps = 1/111 (0%) Query 227 SARKYTFRKRALIVMAVILVGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTRIEEK 286 SA +Y R+R LI +A+ +V + A WW+ G +T YL LR Q R E+ Sbjct 344 SATRYQRRQRTLIGLAIAVVLTVALGIVAGGWTWWLAGIVGVLTGTYLVALRAQVRQEQA 403 Query 287 VRRRRMQRIARARLGVENTRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHL 337 + RRR++ + RARLGV NT D E +P LRRPGAVV+EIDDE P F HL Sbjct 404 LLRRRVKHLRRARLGVHNT-DDEALKIPRNLRRPGAVVVEIDDESPDFEHL 453 >gi|227501482|ref|ZP_03931531.1| conserved hypothetical protein [Corynebacterium accolens ATCC 49725] gi|227077507|gb|EEI15470.1| conserved hypothetical protein [Corynebacterium accolens ATCC 49725] Length=483 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 52/111 (47%), Positives = 67/111 (61%), Gaps = 1/111 (0%) Query 227 SARKYTFRKRALIVMAVILVGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTRIEEK 286 SA +Y R+R LI +A+ +V + A WW+ G +T YL LR Q R E+ Sbjct 340 SATRYQRRQRTLIGLAIAVVLTVALGIVAGGWTWWLAGIVGVLTGTYLVALRAQVRQEQA 399 Query 287 VRRRRMQRIARARLGVENTRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHL 337 + RRR++ + RARLGV NT D E +P LRRPGAVV+EIDDE P F HL Sbjct 400 LLRRRVKHLRRARLGVHNT-DDEALKIPRNLRRPGAVVVEIDDESPDFEHL 449 >gi|213966065|ref|ZP_03394253.1| conserved hypothetical protein [Corynebacterium amycolatum SK46] gi|213951263|gb|EEB62657.1| conserved hypothetical protein [Corynebacterium amycolatum SK46] Length=410 Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 80/231 (35%), Positives = 112/231 (49%), Gaps = 23/231 (9%) Query 129 DEPDYLDVDVVEEDSEALPVGAGAAVGESADEADAEAA--DGVAGHADPEADPVEYEYEY 186 D D + D VE D+EAL + E+AD D +A + V +D A E E Sbjct 196 DADDLMFEDAVESDAEAL-----SETEEAADTVDEQAVLDETVEDDSDHSA---ESNDES 247 Query 187 EYVEDTCGLELEEDDQEAPPTVASGTSRRRR--FDTKTAAAVSARKYTFRKRALIVMAVI 244 V+DT L EDD A RR R FD + A + ++ R+R++ +A Sbjct 248 IAVDDT----LTEDD------YAFAEKRRGRGGFDPVSDAQYAETRFARRRRSVAGLAAF 297 Query 245 LVGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTRIEEKVRRRRMQRIARARLGVEN 304 + + A WWI G+ LYL LR R E+++R RR++R+ ARLGV N Sbjct 298 IAVTIIIAAFAGGWTWWIPLVGVGLMTLYLVNLRHTVRAEQELRARRIRRMKMARLGVRN 357 Query 305 TRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHLESAAPIRNYGWPRDLPRA 355 D E +P RLRRPGAVV+E+DDEDP F L + ++P+A Sbjct 358 REDDELG-IPQRLRRPGAVVVELDDEDPDFADLAYTDYRFDDDDYDEMPQA 407 >gi|319950603|ref|ZP_08024511.1| hypothetical protein ES5_13498 [Dietzia cinnamea P4] gi|319435742|gb|EFV90954.1| hypothetical protein ES5_13498 [Dietzia cinnamea P4] Length=411 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 131/396 (34%), Positives = 176/396 (45%), Gaps = 72/396 (18%) Query 4 IPQSLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPAAG- 62 + SLL I LVV+WLFVL PMLI R+ +RRT D TR L G RL+ G AA Sbjct 1 MSSSLLIILLVVVWLFVLAPMLIRSRNPIRRTGDALAQTRTLYSGGSGRLVPSRGRAAAD 60 Query 63 ------HRWGYLPPEGQG-DDPDWKPEEDWRDDPVEDGFADVEHDIDEDQEADDARRRGA 115 + P G G D + E W EH +++ + A RRG Sbjct 61 PVQAESEESVFGLPTGAGATDAELLDTETW------------EHLLEQTLRREAAGRRGE 108 Query 116 VVMKVAAPQTAGAD--EPDYLDVDVVEEDSEALP----------VGAGAAVGE------S 157 V + + A A E + D EE + +P V A AAV E + Sbjct 109 AVRRAMEERRAAATGGERVHGDEQASEEITSEIPAVVVADERDAVRAVAAVSERSASAVA 168 Query 158 ADEADAEA-ADGVAGHADPEAD-----PVEYEYEY-------------EYVEDTCGLELE 198 D D A AD AG A +AD PV + E + ED G++ E Sbjct 169 TDVGDVRAGADVRAGDAGGDADEDARRPVVVDGELVERSAGERSAGSTGHAEDAAGIDEE 228 Query 199 ------------EDDQEAPPTVASGTSRRR---RFDTKTAAAVSARKYTFRKRALIVMAV 243 E + E RRR +D + ++ R+R +++ Sbjct 229 AVLTHRGRRRPAEPEVELTDADLDFAERRRGRGAYDPMADRQAAEQRAHARQRTALILVG 288 Query 244 ILVGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTRIEEKVRRRRMQRIARARLGVE 303 + V + A P WW G + + YL YLRRQ ++EE +RRRR++R+ RARLGVE Sbjct 289 LSVVAVVLALLTVPAVWWFAGGSVLLLAAYLTYLRRQVKLEESLRRRRIERMRRARLGVE 348 Query 304 NTRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHLES 339 + D E +VP RLRRPGAVVLEIDDEDP F L++ Sbjct 349 SREDDELSIVPPRLRRPGAVVLEIDDEDPAFDVLDT 384 >gi|227504181|ref|ZP_03934230.1| conserved hypothetical protein [Corynebacterium striatum ATCC 6940] gi|227199225|gb|EEI79273.1| conserved hypothetical protein [Corynebacterium striatum ATCC 6940] Length=446 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 50/113 (45%), Positives = 65/113 (58%), Gaps = 1/113 (0%) Query 225 AVSARKYTFRKRALIVMAVILVGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTRIE 284 A SA +Y R+R LI +AV +V + A W A +++YL LR Q R E Sbjct 303 AASANRYQRRQRTLIGLAVAVVFTVALGIVFGGWTWTFAALAGLSSIVYLVALRTQVRQE 362 Query 285 EKVRRRRMQRIARARLGVENTRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHL 337 + + +RR+ + RARLGV N D E +P LRRPGAVVLEIDD+ P F HL Sbjct 363 QALLQRRVYHLRRARLGVRNAED-EALAIPRNLRRPGAVVLEIDDDSPDFDHL 414 Score = 36.2 bits (82), Expect = 8.7, Method: Compositional matrix adjust. Identities = 40/158 (26%), Positives = 73/158 (47%), Gaps = 9/158 (5%) Query 11 ISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVLNGGAGARLLKRGGPAAGHRWGYLPP 70 I ++V+W FVL P L+ + + RT + TRVL G + R P G R L Sbjct 8 IGIIVVWAFVLAPWLLRSQRPMSRTGEAFDDTRVLFEGDSGNVAARRRPRLGKRDVRL-- 65 Query 71 EGQGDDPDWKPEEDWRDDPVEDGFADVEHDIDEDQEADDARRRGAVVM--KVAAPQTAGA 128 + DD D++ + V+D + +A R+ + K A Q+A + Sbjct 66 -SEADDEDFEVIDAADISVVDDKETEAITIAGAAAKAKAHPRQPGAQLGDKAEAAQSALS 124 Query 129 DE----PDYLDVDVVEEDSEALPVGAGAAVGESADEAD 162 +E P+ ++ ++VE+D+E VG+ E +++++ Sbjct 125 EEAERTPETIEGELVEDDNEVTIVGSAETKDEPSNQSE 162 >gi|296118255|ref|ZP_06836836.1| putative membrane protein [Corynebacterium ammoniagenes DSM 20306] gi|295968813|gb|EFG82057.1| putative membrane protein [Corynebacterium ammoniagenes DSM 20306] Length=463 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/157 (37%), Positives = 86/157 (55%), Gaps = 3/157 (1%) Query 181 EYEYEYEYVEDTCGLELEEDDQEAPPTVASGTSRRRRFDTKTAAAVSARKYTFRKRALIV 240 EY+ E+E + E D+E A R +D + AA A +Y R+R L+ Sbjct 280 EYDEEFEPAAIDADSDTELSDEEL--EFAQSRVGRGGWDPEADAANKATRYQRRQRTLLG 337 Query 241 MAVILVGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTRIEEKVRRRRMQRIARARL 300 +A+++V + A WW A G+T+ YL LR Q R E+++R RR+ ++ RARL Sbjct 338 LALVVVLTVALGIIFGGWLWWTAAIAGGLTIAYLVALRTQVRQEQQLRARRIAQLRRARL 397 Query 301 GVENTRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHL 337 GV + +D E +P LRRPGAV++EIDD P + HL Sbjct 398 GVRSAQDEEL-AIPRSLRRPGAVIVEIDDNSPDWDHL 433 >gi|54026924|ref|YP_121166.1| hypothetical protein nfa49500 [Nocardia farcinica IFM 10152] gi|54018432|dbj|BAD59802.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=436 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/210 (32%), Positives = 99/210 (48%), Gaps = 42/210 (20%) Query 180 VEYEYEYEYV-EDTCGLELEED--DQEAPPTVASGTSRRRR--FDTKTAAAVSARKYTFR 234 EY+ +++ ED G + ED D++ P V +RR R +D + A A +YTFR Sbjct 238 AEYDAQFDQAGEDRAGFDHAEDSADEDEPDFV---PTRRGRGGYDPEADAIARAARYTFR 294 Query 235 KRALIVMAVILVGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTRIEEKV------- 287 +RA++ + + + S A A LTP+ WW CG + V YLAYLR+Q R+EE++ Sbjct 295 QRAVLALLLTAIMSGALALILTPLFWWACGLSVVVLATYLAYLRKQVRMEEEIRRRRAAR 354 Query 288 ---------------RRRRMQRIARARLGVENTRDREYDVVPSRLRRPGAVVLEIDDEDP 332 A AR G++ R S +L++DDEDP Sbjct 355 LARRRGEPVPEQADDHEDDEDEHATARGGMDRATARALRRRSS--------LLDVDDEDP 406 Query 333 IFTHLE----SAAPIRNYGWPRDLPRAVGQ 358 +F HLE +AA + D+ RAVG+ Sbjct 407 LFEHLEAFEPAAARALRHRTGTDMRRAVGE 436 >gi|305681882|ref|ZP_07404686.1| conserved hypothetical protein [Corynebacterium matruchotii ATCC 14266] gi|305658355|gb|EFM47858.1| conserved hypothetical protein [Corynebacterium matruchotii ATCC 14266] Length=495 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 42/88 (48%), Positives = 55/88 (63%), Gaps = 1/88 (1%) Query 260 WWICGSATGVTVLYLAYLRRQTRIEEKVRRRRMQRIARARLGVENTRDREYDVVPSRLRR 319 W A G+T++YL LR Q R EE++R +R+ ++ R R GV N+ DRE +P RLRR Sbjct 388 WAAPAIALGMTIIYLIALRAQVRDEERLRHKRVHQLRRTRAGVRNSMDRELG-IPHRLRR 446 Query 320 PGAVVLEIDDEDPIFTHLESAAPIRNYG 347 PGAVVLE DD+ P F LE R+ G Sbjct 447 PGAVVLETDDDSPDFIGLELVETNRSAG 474 >gi|225023046|ref|ZP_03712238.1| hypothetical protein CORMATOL_03094 [Corynebacterium matruchotii ATCC 33806] gi|224944269|gb|EEG25478.1| hypothetical protein CORMATOL_03094 [Corynebacterium matruchotii ATCC 33806] Length=495 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 42/88 (48%), Positives = 55/88 (63%), Gaps = 1/88 (1%) Query 260 WWICGSATGVTVLYLAYLRRQTRIEEKVRRRRMQRIARARLGVENTRDREYDVVPSRLRR 319 W A G+T++YL LR Q R EE++R +R+ ++ R R GV N+ DRE +P RLRR Sbjct 388 WAAPAIALGMTIIYLIALRAQVRDEERLRHKRVHQLRRTRAGVRNSMDRELG-IPHRLRR 446 Query 320 PGAVVLEIDDEDPIFTHLESAAPIRNYG 347 PGAVVLE DD+ P F LE R+ G Sbjct 447 PGAVVLETDDDSPDFIGLELVETNRSAG 474 >gi|311740863|ref|ZP_07714690.1| conserved hypothetical protein [Corynebacterium pseudogenitalium ATCC 33035] gi|311304383|gb|EFQ80459.1| conserved hypothetical protein [Corynebacterium pseudogenitalium ATCC 33035] Length=463 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/111 (47%), Positives = 68/111 (62%), Gaps = 1/111 (0%) Query 227 SARKYTFRKRALIVMAVILVGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTRIEEK 286 SA +Y R+R L+ +AV +V + A + WW+ A +TV YL LR Q R E+ Sbjct 320 SATRYQRRQRTLLGLAVAVVLTVALGIVVGGWTWWLAAVAGVLTVTYLIALRSQVRQEQA 379 Query 287 VRRRRMQRIARARLGVENTRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHL 337 + RRR++ + RARLGV N D E +P LRRPGAVV+EIDDE P F HL Sbjct 380 LMRRRVRHLRRARLGVRNAEDEELK-IPRNLRRPGAVVVEIDDESPDFVHL 429 >gi|62389774|ref|YP_225176.1| hypothetical protein cg1007 [Corynebacterium glutamicum ATCC 13032] gi|21323651|dbj|BAB98278.1| Hypothetical membrane protein [Corynebacterium glutamicum ATCC 13032] gi|41325109|emb|CAF19590.1| putative membrane protein [Corynebacterium glutamicum ATCC 13032] Length=340 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 65/167 (39%), Positives = 87/167 (53%), Gaps = 9/167 (5%) Query 196 ELEEDDQEAPPTVASGTSRRRR--FDTKTAAAVSARKYTFRKRALIVMAVILVGSAAAAF 253 E + DD+ VA RR R +D + +A +Y R+R L+ +A +V S F Sbjct 175 EFDADDELTEEDVAFAQRRRGRGYYDPEADREFAASQYVRRQRTLLGLAATVVISVILGF 234 Query 254 ELTPVAWWICGSATGVTVLYLAYLRRQTRIEEKVRRRRMQRIARARLGVENTRDREYDVV 313 W + A T LYL LR Q R E +R RR++R+ R+R+GV N+ D + Sbjct 235 VFGGWVWGLPAVALAATALYLMALRSQVREENALRARRIRRLRRSRMGVRNSED-----L 289 Query 314 PSRLRRPGAVVLEIDDEDPIFTHLESAAPIRN--YGWPRDLPRAVGQ 358 PSRLRRPGAVVLE+DDE P F L + A Y PR R +GQ Sbjct 290 PSRLRRPGAVVLELDDESPDFEGLPTVAMPEEPYYEEPRRNIRHLGQ 336 >gi|255325454|ref|ZP_05366558.1| conserved hypothetical protein [Corynebacterium tuberculostearicum SK141] gi|255297540|gb|EET76853.1| conserved hypothetical protein [Corynebacterium tuberculostearicum SK141] Length=458 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/111 (47%), Positives = 68/111 (62%), Gaps = 1/111 (0%) Query 227 SARKYTFRKRALIVMAVILVGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTRIEEK 286 SA +Y R+R L+ +AV +V + A + WW+ A +TV YL LR Q R E+ Sbjct 315 SATRYQRRQRTLLGLAVAVVLTVALGIVVGGWTWWLAAVAGVLTVTYLIALRSQVRQEQA 374 Query 287 VRRRRMQRIARARLGVENTRDREYDVVPSRLRRPGAVVLEIDDEDPIFTHL 337 + RRR++ + RARLGV N D E +P LRRPGAVV+EIDDE P F HL Sbjct 375 LMRRRVRHLRRARLGVRNAEDEELK-IPRNLRRPGAVVVEIDDESPDFVHL 424 >gi|19552110|ref|NP_600112.1| hypothetical protein NCgl0849 [Corynebacterium glutamicum ATCC 13032] gi|145295055|ref|YP_001137876.1| hypothetical protein cgR_0998 [Corynebacterium glutamicum R] gi|140844975|dbj|BAF53974.1| hypothetical protein [Corynebacterium glutamicum R] gi|344043626|gb|EGV39315.1| hypothetical protein CgS9114_13970 [Corynebacterium glutamicum S9114] Length=337 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 65/167 (39%), Positives = 87/167 (53%), Gaps = 9/167 (5%) Query 196 ELEEDDQEAPPTVASGTSRRRR--FDTKTAAAVSARKYTFRKRALIVMAVILVGSAAAAF 253 E + DD+ VA RR R +D + +A +Y R+R L+ +A +V S F Sbjct 172 EFDADDELTEEDVAFAQRRRGRGYYDPEADREFAASQYVRRQRTLLGLAATVVISVILGF 231 Query 254 ELTPVAWWICGSATGVTVLYLAYLRRQTRIEEKVRRRRMQRIARARLGVENTRDREYDVV 313 W + A T LYL LR Q R E +R RR++R+ R+R+GV N+ D + Sbjct 232 VFGGWVWGLPAVALAATALYLMALRSQVREENALRARRIRRLRRSRMGVRNSED-----L 286 Query 314 PSRLRRPGAVVLEIDDEDPIFTHLESAAPIRN--YGWPRDLPRAVGQ 358 PSRLRRPGAVVLE+DDE P F L + A Y PR R +GQ Sbjct 287 PSRLRRPGAVVLELDDESPDFEGLPTVAMPEEPYYEEPRRNIRHLGQ 333 >gi|333921211|ref|YP_004494792.1| hypothetical protein AS9A_3554 [Amycolicicoccus subflavus DQS3-9A1] gi|333483432|gb|AEF41992.1| hypothetical protein AS9A_3554 [Amycolicicoccus subflavus DQS3-9A1] Length=254 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 57/165 (35%), Positives = 78/165 (48%), Gaps = 21/165 (12%) Query 200 DDQEAPPTVASGTSRRRR--FDTKTAAAVSARKYTFRKRALIVMAVILVGSAAAAFELTP 257 DD E G+SRR R FD + +A +YT R+R +I + ++V SA A T Sbjct 105 DDAELELETEQGSSRRGRGGFDPEADEIAAAARYTLRQRIVIGLGALVVLSAVVALLFTS 164 Query 258 VAWWICGSATGVTVLYLAYLRRQTRIEEKVRRRRMQRIARARLGVENTRDREYDVVPSRL 317 AW++ + YL YLR Q RIE+ +R RR+ R+ R RE + Sbjct 165 YAWYVTAISIVAFAGYLVYLRTQVRIEQNIRERRLARL-------RGERRRE-----NAA 212 Query 318 RRPGAVVLEIDDEDPIFTHL----ESAAPIRNYGWPRDLPRAVGQ 358 P V+ DDE+P F HL ++A P R LPRA GQ Sbjct 213 GGPDGSVVGTDDENPEFDHLDRFGDTAGPGR---ASSGLPRAAGQ 254 >gi|227542437|ref|ZP_03972486.1| conserved transmembrane protein [Corynebacterium glucuronolyticum ATCC 51866] gi|227181635|gb|EEI62607.1| conserved transmembrane protein [Corynebacterium glucuronolyticum ATCC 51866] Length=358 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 107/346 (31%), Positives = 160/346 (47%), Gaps = 27/346 (7%) Query 7 SLLWISLVVLWLFVLVPMLISKRDAVRRTSDVALATRVL-NGGAGARLLKRGGPAAGHRW 65 +L + +VV+W+FVL P+L+ + +RRT+ TRV+ GG+G + R P Sbjct 4 NLPIVLIVVMWIFVLAPLLLRGQKPIRRTNKALEETRVVYEGGSGTINVPRRRPRFTKND 63 Query 66 GYLPPEGQGDD---PDWKPEEDWRDDPVEDGFADVEHDIDEDQEADD-------ARRRGA 115 + +D D ED DD EDG + E ++ EA+ A G+ Sbjct 64 IHREDAEVSEDYELVDSYELEDNLDD--EDGASASEQSSADNTEAEAVLDGEVLAESGGS 121 Query 116 VVMKVAAPQTAGADEPDYLDVDVVEEDSEALPVGAGAAVGESADEAD-----AEAADGVA 170 V ++V A D D +EE+S L + GE D D E AD + Sbjct 122 VAVRVDASMLEDLTAADSSDTSEIEENSVDLGAPSEKEQGERGDTYDLDTSYTEPAD-LL 180 Query 171 GHADPEADPVEYEYEYEYVEDTCGLELEEDDQEAPPTVASGTSRRRR--FDTKTAAAVSA 228 +P+AD +E E ED+ E + + +A R+ R FD + A VS Sbjct 181 YPGEPDADELET-TEAAVAEDSDA----ESQELSAEEIAFAERRKGRGGFDPQADAEVSL 235 Query 229 RKYTFRKRALIVMAVILVGSAAAAFELTPVAWWICGSATGVTVLYLAYLRRQTRIEEKVR 288 +Y RKR L+ + V LV S AF + W + +YL LR+Q + E +VR Sbjct 236 DRYERRKRTLLALVVALVASIPVAFLVGRWMWMLPVLVVATIAMYLWALRQQVKQENRVR 295 Query 289 RRRMQRIARARLGVENTRDREYDVVPSRLRRPGAVVLEIDDEDPIF 334 RR++ + RARLGV+ + E +P+RLR P +VLE+DD P F Sbjct 296 ARRIRNLRRARLGVKLGAEEEKS-IPARLRTPAGIVLEVDDPSPDF 340 Lambda K H 0.317 0.135 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 666731534350 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40