BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0997

Length=143
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15608137|ref|NP_215512.1|  hypothetical protein Rv0997 [Mycoba...   287    4e-76
gi|340626009|ref|YP_004744461.1|  hypothetical protein MCAN_10021...   283    4e-75
gi|15840425|ref|NP_335462.1|  hypothetical protein MT1026 [Mycoba...   173    8e-42
gi|313755428|gb|ADR74205.1|  (E)-beta-ocimene synthase [Vitis vin...  42.4    0.020
gi|225447406|ref|XP_002281392.1|  PREDICTED: hypothetical protein...  42.4    0.020
gi|225447404|ref|XP_002281379.1|  PREDICTED: hypothetical protein...  42.4    0.020
gi|296081223|emb|CBI17967.3|  unnamed protein product [Vitis vini...  41.2    0.056
gi|4102963|gb|AAD01632.1|  ladder protein [Caenorhabditis elegans]    37.4    0.76 


>gi|15608137|ref|NP_215512.1| hypothetical protein Rv0997 [Mycobacterium tuberculosis H37Rv]
 gi|31792188|ref|NP_854681.1| hypothetical protein Mb1024 [Mycobacterium bovis AF2122/97]
 gi|121636926|ref|YP_977149.1| hypothetical protein BCG_1054 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 42 more sequence titles
 
gi|148660779|ref|YP_001282302.1| hypothetical protein MRA_1006 [Mycobacterium tuberculosis H37Ra]
 gi|148822207|ref|YP_001286961.1| hypothetical protein TBFG_11016 [Mycobacterium tuberculosis F11]
 gi|167968066|ref|ZP_02550343.1| hypothetical protein MtubH3_08533 [Mycobacterium tuberculosis 
H37Ra]
 gi|224989398|ref|YP_002644085.1| hypothetical protein JTY_1026 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|254231294|ref|ZP_04924621.1| hypothetical protein TBCG_00986 [Mycobacterium tuberculosis C]
 gi|254363915|ref|ZP_04979961.1| hypothetical protein TBHG_00981 [Mycobacterium tuberculosis str. 
Haarlem]
 gi|289555220|ref|ZP_06444430.1| hypothetical protein TBXG_02970 [Mycobacterium tuberculosis KZN 
605]
 gi|289568974|ref|ZP_06449201.1| hypothetical protein TBJG_01480 [Mycobacterium tuberculosis T17]
 gi|289573636|ref|ZP_06453863.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289753056|ref|ZP_06512434.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289761132|ref|ZP_06520510.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|298524491|ref|ZP_07011900.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308370568|ref|ZP_07666968.1| hypothetical protein TMCG_00611 [Mycobacterium tuberculosis SUMu003]
 gi|308375316|ref|ZP_07667989.1| hypothetical protein TMGG_03071 [Mycobacterium tuberculosis SUMu007]
 gi|308376576|ref|ZP_07668302.1| hypothetical protein TMHG_00174 [Mycobacterium tuberculosis SUMu008]
 gi|308377576|ref|ZP_07668541.1| hypothetical protein TMIG_03560 [Mycobacterium tuberculosis SUMu009]
 gi|308378788|ref|ZP_07668822.1| hypothetical protein TMJG_02667 [Mycobacterium tuberculosis SUMu010]
 gi|339631060|ref|YP_004722702.1| hypothetical protein MAF_10070 [Mycobacterium africanum GM041182]
 gi|2052131|emb|CAB08147.1| HYPOTHETICAL PROTEIN Rv0997 [Mycobacterium tuberculosis H37Rv]
 gi|31617776|emb|CAD93885.1| HYPOTHETICAL PROTEIN Mb1024 [Mycobacterium bovis AF2122/97]
 gi|121492573|emb|CAL71041.1| Hypothetical protein BCG_1054 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|124600353|gb|EAY59363.1| hypothetical protein TBCG_00986 [Mycobacterium tuberculosis C]
 gi|134149429|gb|EBA41474.1| hypothetical protein TBHG_00981 [Mycobacterium tuberculosis str. 
Haarlem]
 gi|148504931|gb|ABQ72740.1| hypothetical protein MRA_1006 [Mycobacterium tuberculosis H37Ra]
 gi|148720734|gb|ABR05359.1| hypothetical protein TBFG_11016 [Mycobacterium tuberculosis F11]
 gi|224772511|dbj|BAH25317.1| hypothetical protein JTY_1026 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|289439852|gb|EFD22345.1| hypothetical protein TBXG_02970 [Mycobacterium tuberculosis KZN 
605]
 gi|289538067|gb|EFD42645.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289542728|gb|EFD46376.1| hypothetical protein TBJG_01480 [Mycobacterium tuberculosis T17]
 gi|289693643|gb|EFD61072.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289708638|gb|EFD72654.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|298494285|gb|EFI29579.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308331537|gb|EFP20388.1| hypothetical protein TMCG_00611 [Mycobacterium tuberculosis SUMu003]
 gi|308346672|gb|EFP35523.1| hypothetical protein TMGG_03071 [Mycobacterium tuberculosis SUMu007]
 gi|308350587|gb|EFP39438.1| hypothetical protein TMHG_00174 [Mycobacterium tuberculosis SUMu008]
 gi|308355278|gb|EFP44129.1| hypothetical protein TMIG_03560 [Mycobacterium tuberculosis SUMu009]
 gi|308359232|gb|EFP48083.1| hypothetical protein TMJG_02667 [Mycobacterium tuberculosis SUMu010]
 gi|326904776|gb|EGE51709.1| hypothetical protein TBPG_02692 [Mycobacterium tuberculosis W-148]
 gi|328459716|gb|AEB05139.1| hypothetical protein TBSG_03010 [Mycobacterium tuberculosis KZN 
4207]
 gi|339330416|emb|CCC26079.1| hypothetical protein MAF_10070 [Mycobacterium africanum GM041182]
 gi|341600942|emb|CCC63613.1| hypothetical protein BCGM_1020 [Mycobacterium bovis BCG str. 
Moreau RDJ]
 gi|344218824|gb|AEM99454.1| hypothetical protein MTCTRI2_1022 [Mycobacterium tuberculosis 
CTRI-2]
Length=143

 Score =  287 bits (734),  Expect = 4e-76, Method: Compositional matrix adjust.
 Identities = 142/143 (99%), Positives = 143/143 (100%), Gaps = 0/143 (0%)

Query  1    LAGIAGVDRDPPGWPQHSHLLAGDPERFRHQLQRAETTNSIECFVAEWHHAGVAADMTRP  60
            +AGIAGVDRDPPGWPQHSHLLAGDPERFRHQLQRAETTNSIECFVAEWHHAGVAADMTRP
Sbjct  1    MAGIAGVDRDPPGWPQHSHLLAGDPERFRHQLQRAETTNSIECFVAEWHHAGVAADMTRP  60

Query  61   WPTVVQGGAGQRRRRDVEPDRKTPVRWMSGQRLSEITWPTTDIEHSVGAAEVQRHRGAVP  120
            WPTVVQGGAGQRRRRDVEPDRKTPVRWMSGQRLSEITWPTTDIEHSVGAAEVQRHRGAVP
Sbjct  61   WPTVVQGGAGQRRRRDVEPDRKTPVRWMSGQRLSEITWPTTDIEHSVGAAEVQRHRGAVP  120

Query  121  LGSGGDAAGKVEGGRTPQPFVQP  143
            LGSGGDAAGKVEGGRTPQPFVQP
Sbjct  121  LGSGGDAAGKVEGGRTPQPFVQP  143


>gi|340626009|ref|YP_004744461.1| hypothetical protein MCAN_10021 [Mycobacterium canettii CIPT 
140010059]
 gi|340004199|emb|CCC43339.1| hypothetical protein MCAN_10021 [Mycobacterium canettii CIPT 
140010059]
Length=143

 Score =  283 bits (725),  Expect = 4e-75, Method: Compositional matrix adjust.
 Identities = 140/143 (98%), Positives = 142/143 (99%), Gaps = 0/143 (0%)

Query  1    LAGIAGVDRDPPGWPQHSHLLAGDPERFRHQLQRAETTNSIECFVAEWHHAGVAADMTRP  60
            +AGIA VDRDPPGWPQHSHLLAGDPERFRHQL+RAETTNSIECFVAEWHHAGVAADMTRP
Sbjct  1    MAGIASVDRDPPGWPQHSHLLAGDPERFRHQLRRAETTNSIECFVAEWHHAGVAADMTRP  60

Query  61   WPTVVQGGAGQRRRRDVEPDRKTPVRWMSGQRLSEITWPTTDIEHSVGAAEVQRHRGAVP  120
            WPTVVQGGAGQRRRRDVEPDRKTPVRWMSGQRLSEITWPTTDIEHSVGAAEVQRHRGAVP
Sbjct  61   WPTVVQGGAGQRRRRDVEPDRKTPVRWMSGQRLSEITWPTTDIEHSVGAAEVQRHRGAVP  120

Query  121  LGSGGDAAGKVEGGRTPQPFVQP  143
            LGSGGDAAGKVEGGRTPQPFVQP
Sbjct  121  LGSGGDAAGKVEGGRTPQPFVQP  143


>gi|15840425|ref|NP_335462.1| hypothetical protein MT1026 [Mycobacterium tuberculosis CDC1551]
 gi|13880595|gb|AAK45276.1| hypothetical protein MT1026 [Mycobacterium tuberculosis CDC1551]
Length=87

 Score =  173 bits (438),  Expect = 8e-42, Method: Compositional matrix adjust.
 Identities = 87/87 (100%), Positives = 87/87 (100%), Gaps = 0/87 (0%)

Query  57   MTRPWPTVVQGGAGQRRRRDVEPDRKTPVRWMSGQRLSEITWPTTDIEHSVGAAEVQRHR  116
            MTRPWPTVVQGGAGQRRRRDVEPDRKTPVRWMSGQRLSEITWPTTDIEHSVGAAEVQRHR
Sbjct  1    MTRPWPTVVQGGAGQRRRRDVEPDRKTPVRWMSGQRLSEITWPTTDIEHSVGAAEVQRHR  60

Query  117  GAVPLGSGGDAAGKVEGGRTPQPFVQP  143
            GAVPLGSGGDAAGKVEGGRTPQPFVQP
Sbjct  61   GAVPLGSGGDAAGKVEGGRTPQPFVQP  87


>gi|313755428|gb|ADR74205.1| (E)-beta-ocimene synthase [Vitis vinifera]
Length=579

 Score = 42.4 bits (98),  Expect = 0.020, Method: Composition-based stats.
 Identities = 28/107 (27%), Positives = 47/107 (44%), Gaps = 9/107 (8%)

Query  14   WPQHSHLLAGDPERFRHQLQRAETTNSIECFVAEWHHAGVAADMTRPWPTVVQGGAGQRR  73
            WP     L  D    + +L+R E+ NSI C++   H  GV+ +  R    ++ G + ++ 
Sbjct  461  WPSTILRLCNDLATSKAELERGESANSISCYM---HQTGVSEESAREHMKILTGESWKKM  517

Query  74   RRDVEPDRKTPVR------WMSGQRLSEITWPTTDIEHSVGAAEVQR  114
             +  EPD  +P          +  R+SE T+   D   +  A   QR
Sbjct  518  NKVREPDYDSPFSKPFMEIAFNLARISECTYQYGDAHGAPDARSRQR  564


>gi|225447406|ref|XP_002281392.1| PREDICTED: hypothetical protein isoform 2 [Vitis vinifera]
Length=547

 Score = 42.4 bits (98),  Expect = 0.020, Method: Composition-based stats.
 Identities = 28/107 (27%), Positives = 47/107 (44%), Gaps = 9/107 (8%)

Query  14   WPQHSHLLAGDPERFRHQLQRAETTNSIECFVAEWHHAGVAADMTRPWPTVVQGGAGQRR  73
            WP     L  D    + +L+R E+ NSI C++   H  GV+ +  R    ++ G + ++ 
Sbjct  429  WPSTILRLCNDLATSKAELERGESANSISCYM---HQTGVSEESAREHMKILTGESWKKM  485

Query  74   RRDVEPDRKTPVR------WMSGQRLSEITWPTTDIEHSVGAAEVQR  114
             +  EPD  +P          +  R+SE T+   D   +  A   QR
Sbjct  486  NKVREPDYDSPFSKPFMEIAFNLARISECTYQYGDAHGAPDARSRQR  532


>gi|225447404|ref|XP_002281379.1| PREDICTED: hypothetical protein isoform 1 [Vitis vinifera]
Length=579

 Score = 42.4 bits (98),  Expect = 0.020, Method: Composition-based stats.
 Identities = 28/107 (27%), Positives = 47/107 (44%), Gaps = 9/107 (8%)

Query  14   WPQHSHLLAGDPERFRHQLQRAETTNSIECFVAEWHHAGVAADMTRPWPTVVQGGAGQRR  73
            WP     L  D    + +L+R E+ NSI C++   H  GV+ +  R    ++ G + ++ 
Sbjct  461  WPSTILRLCNDLATSKAELERGESANSISCYM---HQTGVSEESAREHMKILTGESWKKM  517

Query  74   RRDVEPDRKTPVR------WMSGQRLSEITWPTTDIEHSVGAAEVQR  114
             +  EPD  +P          +  R+SE T+   D   +  A   QR
Sbjct  518  NKVREPDYDSPFSKPFMEIAFNLARISECTYQYGDAHGAPDARSRQR  564


>gi|296081223|emb|CBI17967.3| unnamed protein product [Vitis vinifera]
Length=206

 Score = 41.2 bits (95),  Expect = 0.056, Method: Compositional matrix adjust.
 Identities = 26/101 (26%), Positives = 45/101 (45%), Gaps = 9/101 (8%)

Query  8    DRDPPGWPQHSHLLAGDPERFRHQLQRAETTNSIECFVAEWHHAGVAADMTRPWPTVVQG  67
            D +   WP     L  D    + +L+R E+ NSI C++   H  GV+ +  R    ++ G
Sbjct  82   DHELLRWPSTILRLCNDLATSKAELERGESANSISCYM---HQTGVSEESAREHMKILTG  138

Query  68   GAGQRRRRDVEPDRKTPVR------WMSGQRLSEITWPTTD  102
             + ++  +  EPD  +P          +  R+SE T+   D
Sbjct  139  ESWKKMNKVREPDYDSPFSKPFMEIAFNLARISECTYQYGD  179


>gi|4102963|gb|AAD01632.1| ladder protein [Caenorhabditis elegans]
Length=1198

 Score = 37.4 bits (85),  Expect = 0.76, Method: Composition-based stats.
 Identities = 18/49 (37%), Positives = 31/49 (64%), Gaps = 0/49 (0%)

Query  72   RRRRDVEPDRKTPVRWMSGQRLSEITWPTTDIEHSVGAAEVQRHRGAVP  120
            RRRR++EP  +  V+WM+ ++L +IT   T  + S   A+V+ + G +P
Sbjct  647  RRRREIEPAFQDFVKWMTPEQLGDITALKTAGKESEVQAKVKEYFGQLP  695



Lambda     K      H
   0.317    0.135    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 129250525032




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40