BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv1010 Length=317 Score E Sequences producing significant alignments: (Bits) Value gi|15608150|ref|NP_215526.1| dimethyladenosine transferase [Myco... 633 1e-179 gi|253799960|ref|YP_003032961.1| dimethyladenosine transferase k... 632 1e-179 gi|308376581|ref|ZP_07439351.2| dimethyladenosine transferase ks... 632 2e-179 gi|289749539|ref|ZP_06508917.1| LOW QUALITY PROTEIN: dimethylade... 625 2e-177 gi|240169906|ref|ZP_04748565.1| dimethyladenosine transferase [M... 526 2e-147 gi|336461347|gb|EGO40218.1| dimethyladenosine transferase [Mycob... 516 2e-144 gi|118466314|ref|YP_880398.1| dimethyladenosine transferase [Myc... 516 2e-144 gi|41407073|ref|NP_959909.1| dimethyladenosine transferase [Myco... 514 5e-144 gi|254774035|ref|ZP_05215551.1| dimethyladenosine transferase [M... 514 6e-144 gi|254820388|ref|ZP_05225389.1| dimethyladenosine transferase [M... 505 3e-141 gi|15827037|ref|NP_301300.1| dimethyladenosine transferase [Myco... 505 4e-141 gi|342861611|ref|ZP_08718257.1| 16S ribosomal RNA methyltransfer... 501 4e-140 gi|296169879|ref|ZP_06851491.1| dimethyladenosine transferase [M... 499 2e-139 gi|120405750|ref|YP_955579.1| dimethyladenosine transferase [Myc... 482 3e-134 gi|145222523|ref|YP_001133201.1| dimethyladenosine transferase [... 479 2e-133 gi|119870378|ref|YP_940330.1| dimethyladenosine transferase [Myc... 475 5e-132 gi|108801227|ref|YP_641424.1| dimethyladenosine transferase [Myc... 474 1e-131 gi|118473872|ref|YP_889677.1| dimethyladenosine transferase [Myc... 452 3e-125 gi|183984448|ref|YP_001852739.1| dimethyladenosine transferase K... 433 2e-119 gi|118619728|ref|YP_908060.1| dimethyladenosine transferase [Myc... 432 4e-119 gi|333989606|ref|YP_004522220.1| dimethyladenosine transferase K... 409 2e-112 gi|169628224|ref|YP_001701873.1| dimethyladenosine transferase [... 404 1e-110 gi|289757093|ref|ZP_06516471.1| predicted protein [Mycobacterium... 401 6e-110 gi|54026877|ref|YP_121119.1| dimethyladenosine transferase [Noca... 347 2e-93 gi|111022636|ref|YP_705608.1| dimethyladenosine transferase [Rho... 342 5e-92 gi|312138652|ref|YP_004005988.1| rRNA dimethyladenosine transfer... 340 1e-91 gi|226365142|ref|YP_002782925.1| dimethyladenosine transferase [... 339 4e-91 gi|325676279|ref|ZP_08155958.1| dimethyladenosine transferase [R... 338 7e-91 gi|226307847|ref|YP_002767807.1| dimethyladenosine transferase [... 335 8e-90 gi|262201474|ref|YP_003272682.1| dimethyladenosine transferase [... 334 9e-90 gi|343925258|ref|ZP_08764785.1| ribosomal RNA small subunit meth... 333 2e-89 gi|337290347|ref|YP_004629368.1| dimethyladenosine transferase [... 320 2e-85 gi|326383797|ref|ZP_08205482.1| 16S ribosomal RNA methyltransfer... 319 4e-85 gi|38233472|ref|NP_939239.1| dimethyladenosine transferase [Cory... 315 7e-84 gi|300858098|ref|YP_003783081.1| dimethyladenosine transferase [... 313 2e-83 gi|227501495|ref|ZP_03931544.1| dimethyladenosine transferase [C... 310 1e-82 gi|19552136|ref|NP_600138.1| dimethyladenosine transferase [Cory... 309 3e-82 gi|344043639|gb|EGV39328.1| 16S ribosomal RNA methyltransferase ... 308 5e-82 gi|145295068|ref|YP_001137889.1| dimethyladenosine transferase [... 308 6e-82 gi|306835652|ref|ZP_07468661.1| dimethyladenosine transferase [C... 307 1e-81 gi|25027528|ref|NP_737582.1| dimethyladenosine transferase [Cory... 306 2e-81 gi|227548244|ref|ZP_03978293.1| dimethyladenosine transferase [C... 306 3e-81 gi|300781662|ref|ZP_07091516.1| dimethyladenosine transferase [C... 305 7e-81 gi|255325442|ref|ZP_05366546.1| dimethyladenosine transferase [C... 303 2e-80 gi|256374794|ref|YP_003098454.1| dimethyladenosine transferase [... 303 2e-80 gi|311740851|ref|ZP_07714678.1| dimethyladenosine transferase [C... 303 3e-80 gi|227542448|ref|ZP_03972497.1| dimethyladenosine transferase [C... 300 3e-79 gi|227487807|ref|ZP_03918123.1| dimethyladenosine transferase [C... 299 4e-79 gi|319950588|ref|ZP_08024496.1| 16S ribosomal RNA methyltransfer... 295 6e-78 gi|68536597|ref|YP_251302.1| dimethyladenosine transferase [Cory... 294 1e-77 >gi|15608150|ref|NP_215526.1| dimethyladenosine transferase [Mycobacterium tuberculosis H37Rv] gi|15840438|ref|NP_335475.1| dimethyladenosine transferase [Mycobacterium tuberculosis CDC1551] gi|31792201|ref|NP_854694.1| dimethyladenosine transferase [Mycobacterium bovis AF2122/97] 73 more sequence titles Length=317 Score = 633 bits (1632), Expect = 1e-179, Method: Compositional matrix adjust. Identities = 317/317 (100%), Positives = 317/317 (100%), Gaps = 0/317 (0%) Query 1 MCCTSGCALTIRLLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLV 60 MCCTSGCALTIRLLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLV Sbjct 1 MCCTSGCALTIRLLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLV 60 Query 61 LEVGPGLGSLTLALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALR 120 LEVGPGLGSLTLALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALR Sbjct 61 LEVGPGLGSLTLALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALR 120 Query 121 REDLAAAPTAVVANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGV 180 REDLAAAPTAVVANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGV Sbjct 121 REDLAAAPTAVVANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGV 180 Query 181 PSVKLRFFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIA 240 PSVKLRFFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIA Sbjct 181 PSVKLRFFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIA 240 Query 241 FAQRRKTSRNAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRLLRRSGGSDEATS 300 FAQRRKTSRNAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRLLRRSGGSDEATS Sbjct 241 FAQRRKTSRNAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRLLRRSGGSDEATS 300 Query 301 TGRDARAPDISGHASAS 317 TGRDARAPDISGHASAS Sbjct 301 TGRDARAPDISGHASAS 317 >gi|253799960|ref|YP_003032961.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis KZN 1435] gi|253321463|gb|ACT26066.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis KZN 1435] gi|339294013|gb|AEJ46124.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis CCDC5079] gi|339297653|gb|AEJ49763.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis CCDC5180] Length=323 Score = 632 bits (1631), Expect = 1e-179, Method: Compositional matrix adjust. Identities = 317/317 (100%), Positives = 317/317 (100%), Gaps = 0/317 (0%) Query 1 MCCTSGCALTIRLLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLV 60 MCCTSGCALTIRLLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLV Sbjct 7 MCCTSGCALTIRLLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLV 66 Query 61 LEVGPGLGSLTLALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALR 120 LEVGPGLGSLTLALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALR Sbjct 67 LEVGPGLGSLTLALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALR 126 Query 121 REDLAAAPTAVVANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGV 180 REDLAAAPTAVVANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGV Sbjct 127 REDLAAAPTAVVANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGV 186 Query 181 PSVKLRFFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIA 240 PSVKLRFFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIA Sbjct 187 PSVKLRFFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIA 246 Query 241 FAQRRKTSRNAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRLLRRSGGSDEATS 300 FAQRRKTSRNAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRLLRRSGGSDEATS Sbjct 247 FAQRRKTSRNAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRLLRRSGGSDEATS 306 Query 301 TGRDARAPDISGHASAS 317 TGRDARAPDISGHASAS Sbjct 307 TGRDARAPDISGHASAS 323 >gi|308376581|ref|ZP_07439351.2| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu008] gi|308377580|ref|ZP_07479724.2| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu009] gi|308350599|gb|EFP39450.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu008] gi|308355232|gb|EFP44083.1| dimethyladenosine transferase ksgA [Mycobacterium tuberculosis SUMu009] Length=320 Score = 632 bits (1631), Expect = 2e-179, Method: Compositional matrix adjust. Identities = 317/317 (100%), Positives = 317/317 (100%), Gaps = 0/317 (0%) Query 1 MCCTSGCALTIRLLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLV 60 MCCTSGCALTIRLLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLV Sbjct 4 MCCTSGCALTIRLLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLV 63 Query 61 LEVGPGLGSLTLALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALR 120 LEVGPGLGSLTLALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALR Sbjct 64 LEVGPGLGSLTLALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALR 123 Query 121 REDLAAAPTAVVANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGV 180 REDLAAAPTAVVANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGV Sbjct 124 REDLAAAPTAVVANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGV 183 Query 181 PSVKLRFFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIA 240 PSVKLRFFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIA Sbjct 184 PSVKLRFFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIA 243 Query 241 FAQRRKTSRNAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRLLRRSGGSDEATS 300 FAQRRKTSRNAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRLLRRSGGSDEATS Sbjct 244 FAQRRKTSRNAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRLLRRSGGSDEATS 303 Query 301 TGRDARAPDISGHASAS 317 TGRDARAPDISGHASAS Sbjct 304 TGRDARAPDISGHASAS 320 >gi|289749539|ref|ZP_06508917.1| LOW QUALITY PROTEIN: dimethyladenosine transferase ksgA [Mycobacterium tuberculosis T92] gi|289690126|gb|EFD57555.1| LOW QUALITY PROTEIN: dimethyladenosine transferase ksgA [Mycobacterium tuberculosis T92] Length=318 Score = 625 bits (1613), Expect = 2e-177, Method: Compositional matrix adjust. Identities = 313/313 (100%), Positives = 313/313 (100%), Gaps = 0/313 (0%) Query 1 MCCTSGCALTIRLLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLV 60 MCCTSGCALTIRLLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLV Sbjct 1 MCCTSGCALTIRLLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLV 60 Query 61 LEVGPGLGSLTLALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALR 120 LEVGPGLGSLTLALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALR Sbjct 61 LEVGPGLGSLTLALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALR 120 Query 121 REDLAAAPTAVVANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGV 180 REDLAAAPTAVVANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGV Sbjct 121 REDLAAAPTAVVANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGV 180 Query 181 PSVKLRFFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIA 240 PSVKLRFFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIA Sbjct 181 PSVKLRFFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIA 240 Query 241 FAQRRKTSRNAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRLLRRSGGSDEATS 300 FAQRRKTSRNAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRLLRRSGGSDEATS Sbjct 241 FAQRRKTSRNAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRLLRRSGGSDEATS 300 Query 301 TGRDARAPDISGH 313 TGRDARAPDISGH Sbjct 301 TGRDARAPDISGH 313 >gi|240169906|ref|ZP_04748565.1| dimethyladenosine transferase [Mycobacterium kansasii ATCC 12478] Length=317 Score = 526 bits (1354), Expect = 2e-147, Method: Compositional matrix adjust. Identities = 264/309 (86%), Positives = 283/309 (92%), Gaps = 1/309 (0%) Query 4 TSGCALTIRLLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEV 63 TSG LTIRLLGRTEIRRLAKEL+FRPRKSLGQNFVHDANTVRRVVAASG++R+D VLEV Sbjct 7 TSGDTLTIRLLGRTEIRRLAKELEFRPRKSLGQNFVHDANTVRRVVAASGITRADQVLEV 66 Query 64 GPGLGSLTLALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALRRED 123 GPGLGSLTLALLDRGATVTAVEIDP+LA+RL QTVAEHSHSE+ RLTV+NRD+L+LR +D Sbjct 67 GPGLGSLTLALLDRGATVTAVEIDPVLAARLPQTVAEHSHSEIQRLTVLNRDILSLRPQD 126 Query 124 LAAAPTAVVANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSV 183 LA PTAVVANLPYNVAVPALLHLL EFPSIRVVTVMVQAEVAERLAAEPG KEYGVPSV Sbjct 127 LADEPTAVVANLPYNVAVPALLHLLAEFPSIRVVTVMVQAEVAERLAAEPGGKEYGVPSV 186 Query 184 KLRFFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIAFAQ 243 K+RF GRVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTD AFR++VFELVDIAFAQ Sbjct 187 KVRFHGRVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDGAFRQQVFELVDIAFAQ 246 Query 244 RRKTSRNAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRLLRRSG-GSDEATSTG 302 RRKTSRNAF QWAGSG+ESANRLLAASIDPARRGETLSI DFVRLL+R+G G+ E T Sbjct 247 RRKTSRNAFAQWAGSGNESANRLLAASIDPARRGETLSIADFVRLLQRTGQGAGEVAQTS 306 Query 303 RDARAPDIS 311 A +S Sbjct 307 GAAGEQQVS 315 >gi|336461347|gb|EGO40218.1| dimethyladenosine transferase [Mycobacterium avium subsp. paratuberculosis S397] Length=318 Score = 516 bits (1329), Expect = 2e-144, Method: Compositional matrix adjust. Identities = 263/314 (84%), Positives = 280/314 (90%), Gaps = 9/314 (2%) Query 5 SGCALTIRLLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVG 64 S CALTIRLLGRTEIRRLAKEL+FRPRKSLGQNFVHDANTVRRVV+ SGVSRSD VLEVG Sbjct 8 SWCALTIRLLGRTEIRRLAKELEFRPRKSLGQNFVHDANTVRRVVSTSGVSRSDHVLEVG 67 Query 65 PGLGSLTLALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDL 124 PGLGSLTLALLDRGA VTAVEIDP+LA RL TVAEHSHSE+ RLTV+NRDVL LRR++L Sbjct 68 PGLGSLTLALLDRGAHVTAVEIDPVLAERLPHTVAEHSHSEIQRLTVLNRDVLTLRRDEL 127 Query 125 AAAPTAVVANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVK 184 A PTAVVANLPYNVAVPALLHLL EFPSIR VTVMVQAEVAERLAAEPG KEYGVPSVK Sbjct 128 AEPPTAVVANLPYNVAVPALLHLLAEFPSIRTVTVMVQAEVAERLAAEPGGKEYGVPSVK 187 Query 185 LRFFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIAFAQR 244 +RFFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRY TSPWPTD AFRR+VFELVDIAF QR Sbjct 188 VRFFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRYPTSPWPTDPAFRRQVFELVDIAFGQR 247 Query 245 RKTSRNAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRLLRRS---GGSDEATST 301 RKT RNAFV WAGSG+ESA+RLLAASIDPARRGETLSIDDFVRLL+RS GG+D Sbjct 248 RKTCRNAFVDWAGSGNESADRLLAASIDPARRGETLSIDDFVRLLQRSADRGGTD----- 302 Query 302 GRDARAPDISGHAS 315 R+ +P +G + Sbjct 303 -REGTSPPTAGQGA 315 >gi|118466314|ref|YP_880398.1| dimethyladenosine transferase [Mycobacterium avium 104] gi|166221679|sp|A0QBW0.1|RSMA_MYCA1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|118167601|gb|ABK68498.1| dimethyladenosine transferase [Mycobacterium avium 104] Length=318 Score = 516 bits (1329), Expect = 2e-144, Method: Compositional matrix adjust. Identities = 263/314 (84%), Positives = 280/314 (90%), Gaps = 9/314 (2%) Query 5 SGCALTIRLLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVG 64 S CALTIRLLGRTEIRRLAKEL+FRPRKSLGQNFVHDANTVRRVV+ SGVSRSD VLEVG Sbjct 8 SWCALTIRLLGRTEIRRLAKELEFRPRKSLGQNFVHDANTVRRVVSTSGVSRSDHVLEVG 67 Query 65 PGLGSLTLALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDL 124 PGLGSLTLALLDRGA VTAVEIDP+LA RL TVAEHSHSE+ RLTV+NRDVL LRR++L Sbjct 68 PGLGSLTLALLDRGAHVTAVEIDPVLAERLPHTVAEHSHSEIQRLTVLNRDVLTLRRDEL 127 Query 125 AAAPTAVVANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVK 184 A PTAVVANLPYNVAVPALLHLL EFPSIR VTVMVQAEVAERLAAEPG KEYGVPSVK Sbjct 128 AEPPTAVVANLPYNVAVPALLHLLAEFPSIRTVTVMVQAEVAERLAAEPGGKEYGVPSVK 187 Query 185 LRFFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIAFAQR 244 +RFFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRY TSPWPTD AFRR+VF+LVDIAF QR Sbjct 188 VRFFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRYPTSPWPTDPAFRRQVFQLVDIAFGQR 247 Query 245 RKTSRNAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRLLRRS---GGSDEATST 301 RKT RNAFV WAGSG+ESA+RLLAASIDPARRGETLSIDDFVRLL+RS GGSD Sbjct 248 RKTCRNAFVDWAGSGNESADRLLAASIDPARRGETLSIDDFVRLLQRSADRGGSD----- 302 Query 302 GRDARAPDISGHAS 315 R+ +P +G + Sbjct 303 -REGTSPPTAGQGA 315 >gi|41407073|ref|NP_959909.1| dimethyladenosine transferase [Mycobacterium avium subsp. paratuberculosis K-10] gi|62900553|sp|Q741W2.1|RSMA_MYCPA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|41395424|gb|AAS03292.1| KsgA [Mycobacterium avium subsp. paratuberculosis K-10] Length=318 Score = 514 bits (1325), Expect = 5e-144, Method: Compositional matrix adjust. Identities = 262/314 (84%), Positives = 279/314 (89%), Gaps = 9/314 (2%) Query 5 SGCALTIRLLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVG 64 S CALTIRLLGRTEIRRLAKEL+FRPRKSLGQNFVHDANTVRRVV+ SGVSRSD VLEVG Sbjct 8 SWCALTIRLLGRTEIRRLAKELEFRPRKSLGQNFVHDANTVRRVVSTSGVSRSDHVLEVG 67 Query 65 PGLGSLTLALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDL 124 PGLG LTLALLDRGA VTAVEIDP+LA RL TVAEHSHSE+ RLTV+NRDVL LRR++L Sbjct 68 PGLGPLTLALLDRGAHVTAVEIDPVLAERLPHTVAEHSHSEIQRLTVLNRDVLTLRRDEL 127 Query 125 AAAPTAVVANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVK 184 A PTAVVANLPYNVAVPALLHLL EFPSIR VTVMVQAEVAERLAAEPG KEYGVPSVK Sbjct 128 AEPPTAVVANLPYNVAVPALLHLLAEFPSIRTVTVMVQAEVAERLAAEPGGKEYGVPSVK 187 Query 185 LRFFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIAFAQR 244 +RFFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRY TSPWPTD AFRR+VFELVDIAF QR Sbjct 188 VRFFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRYPTSPWPTDPAFRRQVFELVDIAFGQR 247 Query 245 RKTSRNAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRLLRRS---GGSDEATST 301 RKT RNAFV WAGSG+ESA+RLLAASIDPARRGETLSIDDFVRLL+RS GG+D Sbjct 248 RKTCRNAFVDWAGSGNESADRLLAASIDPARRGETLSIDDFVRLLQRSADRGGTD----- 302 Query 302 GRDARAPDISGHAS 315 R+ +P +G + Sbjct 303 -REGTSPPTAGQGA 315 >gi|254774035|ref|ZP_05215551.1| dimethyladenosine transferase [Mycobacterium avium subsp. avium ATCC 25291] Length=318 Score = 514 bits (1325), Expect = 6e-144, Method: Compositional matrix adjust. Identities = 262/314 (84%), Positives = 279/314 (89%), Gaps = 9/314 (2%) Query 5 SGCALTIRLLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVG 64 S CALTIRLLGRTEIRRLAKEL+FRPRKSLGQNFVHDANTVRRVV+ SGVSRSD VLEVG Sbjct 8 SWCALTIRLLGRTEIRRLAKELEFRPRKSLGQNFVHDANTVRRVVSTSGVSRSDHVLEVG 67 Query 65 PGLGSLTLALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDL 124 PGLGSLTLALLDRGA VTAVEIDP+LA RL TVAEHSHSE+ RLTV+NRDVL LRR++L Sbjct 68 PGLGSLTLALLDRGAHVTAVEIDPVLAERLPHTVAEHSHSEIQRLTVLNRDVLTLRRDEL 127 Query 125 AAAPTAVVANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVK 184 A PTAVVANLPYNVAVPALLHLL EFPSIR VTVMVQAEVAERLAAEPG KEYGVPSVK Sbjct 128 AEPPTAVVANLPYNVAVPALLHLLAEFPSIRTVTVMVQAEVAERLAAEPGGKEYGVPSVK 187 Query 185 LRFFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIAFAQR 244 +RFFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRY TSPWP D AFRR+VFELVDIAF QR Sbjct 188 VRFFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRYPTSPWPIDPAFRRQVFELVDIAFGQR 247 Query 245 RKTSRNAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRLLRRS---GGSDEATST 301 RKT RNAFV WAGSG+ESA+RLLAASIDPARRGETLSIDDFVRLL+RS GG+D Sbjct 248 RKTCRNAFVDWAGSGNESADRLLAASIDPARRGETLSIDDFVRLLQRSADRGGTD----- 302 Query 302 GRDARAPDISGHAS 315 R+ +P +G + Sbjct 303 -REGTSPPTAGQGA 315 >gi|254820388|ref|ZP_05225389.1| dimethyladenosine transferase [Mycobacterium intracellulare ATCC 13950] Length=310 Score = 505 bits (1301), Expect = 3e-141, Method: Compositional matrix adjust. Identities = 252/293 (87%), Positives = 268/293 (92%), Gaps = 0/293 (0%) Query 1 MCCTSGCALTIRLLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLV 60 M S CALTIRLLGRTEIRRLAKEL+FRPRKSLGQNFVHDANTVRRVV+ SG+ RSD V Sbjct 1 MQRKSWCALTIRLLGRTEIRRLAKELEFRPRKSLGQNFVHDANTVRRVVSTSGIGRSDHV 60 Query 61 LEVGPGLGSLTLALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALR 120 LEVGPGLGSLTLALLDRGA VTAVEIDP+LA RL TVAEHSHSE+ RL+V+NRD+L LR Sbjct 61 LEVGPGLGSLTLALLDRGAPVTAVEIDPVLAERLPDTVAEHSHSEIQRLSVLNRDILTLR 120 Query 121 REDLAAAPTAVVANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGV 180 R++L PTAVVANLPYNVAVPALLHLL EFPSIRVVTVMVQAEVAERLAAEPG KEYGV Sbjct 121 RDELDVQPTAVVANLPYNVAVPALLHLLAEFPSIRVVTVMVQAEVAERLAAEPGGKEYGV 180 Query 181 PSVKLRFFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIA 240 PSVK+RFFG VRRCG VSPTVFWPIPRVYSGLVRIDRY TSPWPT DAFRR+VFELVDIA Sbjct 181 PSVKVRFFGTVRRCGTVSPTVFWPIPRVYSGLVRIDRYATSPWPTADAFRRQVFELVDIA 240 Query 241 FAQRRKTSRNAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRLLRRSG 293 FAQRRKT RNAF+ WAGSG+ESA+RLLAASIDPARRGETLSIDDFVRLL+RS Sbjct 241 FAQRRKTCRNAFLDWAGSGNESADRLLAASIDPARRGETLSIDDFVRLLQRSA 293 >gi|15827037|ref|NP_301300.1| dimethyladenosine transferase [Mycobacterium leprae TN] gi|221229515|ref|YP_002502931.1| dimethyladenosine transferase [Mycobacterium leprae Br4923] gi|27151599|sp|Q9CD52.1|RSMA_MYCLE RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|254807875|sp|B8ZU59.1|RSMA_MYCLB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|13092584|emb|CAC29749.1| putative dimethyladenosine transferase [Mycobacterium leprae] gi|219932622|emb|CAR70334.1| putative dimethyladenosine transferase [Mycobacterium leprae Br4923] Length=306 Score = 505 bits (1300), Expect = 4e-141, Method: Compositional matrix adjust. Identities = 250/294 (86%), Positives = 267/294 (91%), Gaps = 0/294 (0%) Query 5 SGCALTIRLLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVG 64 SGC LTIRLL RTEIR L KEL+ RPRKSLGQNFVHDANTVRRVV+ S V+RSD VLEVG Sbjct 5 SGCTLTIRLLERTEIRWLVKELECRPRKSLGQNFVHDANTVRRVVSTSRVNRSDFVLEVG 64 Query 65 PGLGSLTLALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDL 124 PG GSLTLALLD GA V+A+EIDP+LA RL QTVAEHS++E+HRLTV NRDVL+ RR DL Sbjct 65 PGFGSLTLALLDCGAAVSAIEIDPVLAGRLPQTVAEHSNNEIHRLTVCNRDVLSFRRGDL 124 Query 125 AAAPTAVVANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVK 184 A PTA+VANLPYNVAVPALLHLL EFPSIR VTVMVQAEVAERLAAEPG K+YGVPSVK Sbjct 125 ATEPTALVANLPYNVAVPALLHLLAEFPSIRTVTVMVQAEVAERLAAEPGGKDYGVPSVK 184 Query 185 LRFFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIAFAQR 244 L FFGRVRRCGMVSPTVFWPIPRVYSGLVR+DRY TSPWPTDDAFRR+VFELVDIAF QR Sbjct 185 LSFFGRVRRCGMVSPTVFWPIPRVYSGLVRVDRYATSPWPTDDAFRRQVFELVDIAFTQR 244 Query 245 RKTSRNAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRLLRRSGGSDEA 298 RKTSRNAFV+WAGS +ESANRLLAASIDPARRGETLSIDDFVRLLRRS G D+A Sbjct 245 RKTSRNAFVKWAGSSNESANRLLAASIDPARRGETLSIDDFVRLLRRSDGRDDA 298 >gi|342861611|ref|ZP_08718257.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Mycobacterium colombiense CECT 3035] gi|342130745|gb|EGT84041.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Mycobacterium colombiense CECT 3035] Length=317 Score = 501 bits (1291), Expect = 4e-140, Method: Compositional matrix adjust. Identities = 250/288 (87%), Positives = 264/288 (92%), Gaps = 0/288 (0%) Query 5 SGCALTIRLLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVG 64 S CALTIRLLGRTEIRRLAKEL+FRPRKSLGQNFVHDANTVRR+V SGVSRSD VLEVG Sbjct 8 SWCALTIRLLGRTEIRRLAKELEFRPRKSLGQNFVHDANTVRRIVTTSGVSRSDHVLEVG 67 Query 65 PGLGSLTLALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDL 124 PGLGSLTLALLDRG+ VTAVEIDP+LA RL TVAEHS SE RLTV+NRDVL LRR++L Sbjct 68 PGLGSLTLALLDRGSPVTAVEIDPVLAERLPHTVAEHSTSEGQRLTVLNRDVLTLRRDEL 127 Query 125 AAAPTAVVANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVK 184 A PTAVVANLPYNVAVPALLHLL EFPSI+ VTVMVQAEVAERLAAEPG KEYGVPSVK Sbjct 128 AVQPTAVVANLPYNVAVPALLHLLAEFPSIQTVTVMVQAEVAERLAAEPGGKEYGVPSVK 187 Query 185 LRFFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIAFAQR 244 +RFFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRY TSPWP D+AFRR VF L+DIAF QR Sbjct 188 VRFFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRYATSPWPADEAFRRAVFALIDIAFGQR 247 Query 245 RKTSRNAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRLLRRS 292 RKT RNAFV WAGSG+ESA+RLLAASIDPARRGETLSIDDFVRLL+RS Sbjct 248 RKTCRNAFVDWAGSGNESADRLLAASIDPARRGETLSIDDFVRLLQRS 295 >gi|296169879|ref|ZP_06851491.1| dimethyladenosine transferase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895435|gb|EFG75137.1| dimethyladenosine transferase [Mycobacterium parascrofulaceum ATCC BAA-614] Length=317 Score = 499 bits (1285), Expect = 2e-139, Method: Compositional matrix adjust. Identities = 247/288 (86%), Positives = 265/288 (93%), Gaps = 0/288 (0%) Query 5 SGCALTIRLLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVG 64 S C LTIRLLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRR+V+ +GV RSD VLEVG Sbjct 8 SWCELTIRLLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRIVSTAGVGRSDHVLEVG 67 Query 65 PGLGSLTLALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDL 124 PGLGSLTLALLDRGA VTAVEIDP+LA RL TVAEHSHSE+HRLTV+NRDVL L ++L Sbjct 68 PGLGSLTLALLDRGAAVTAVEIDPVLAERLPLTVAEHSHSEIHRLTVLNRDVLTLGPDEL 127 Query 125 AAAPTAVVANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVK 184 AA P AVVANLPYNVAVPALLHLL +FPSI+ VTVMVQAEVAERLAAEPG K+YGVPSVK Sbjct 128 AAEPNAVVANLPYNVAVPALLHLLADFPSIQTVTVMVQAEVAERLAAEPGGKDYGVPSVK 187 Query 185 LRFFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIAFAQR 244 +RFFG VRRCG VSP VFWPIPRVYSGLVRIDRY T+PWPTD+AFRR+VF LVDIAFAQR Sbjct 188 VRFFGTVRRCGTVSPAVFWPIPRVYSGLVRIDRYPTAPWPTDEAFRRQVFRLVDIAFAQR 247 Query 245 RKTSRNAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRLLRRS 292 RKT+RNAFV WAGSG+ESANRLLAASIDPARRGETLS+DDFVRLLRRS Sbjct 248 RKTARNAFVDWAGSGNESANRLLAASIDPARRGETLSVDDFVRLLRRS 295 >gi|120405750|ref|YP_955579.1| dimethyladenosine transferase [Mycobacterium vanbaalenii PYR-1] gi|226732602|sp|A1TEH3.1|RSMA_MYCVP RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|119958568|gb|ABM15573.1| dimethyladenosine transferase [Mycobacterium vanbaalenii PYR-1] Length=311 Score = 482 bits (1241), Expect = 3e-134, Method: Compositional matrix adjust. Identities = 235/311 (76%), Positives = 268/311 (87%), Gaps = 9/311 (2%) Query 9 LTIRLLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVGPGLG 68 +TIRLLGRTEIR LAK +DFRPRKS GQNFVHDANTVRR+V+AS ++RSD VLEVGPGLG Sbjct 1 MTIRLLGRTEIRHLAKSIDFRPRKSFGQNFVHDANTVRRIVSASSINRSDHVLEVGPGLG 60 Query 69 SLTLALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDLAAAP 128 SLTLALLDRGA VTAVEIDP+LA++L T+A HSHSEV+RLTV+NRD+L ++ D+ P Sbjct 61 SLTLALLDRGAKVTAVEIDPVLANQLPTTIAAHSHSEVNRLTVLNRDILTFKQSDMTEMP 120 Query 129 TAVVANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVKLRFF 188 TA+VANLPYNVAVPALLHLL EFPSIR V VMVQAEVAERLAAEPG K+YGVPS K+RFF Sbjct 121 TALVANLPYNVAVPALLHLLAEFPSIRTVMVMVQAEVAERLAAEPGGKDYGVPSAKVRFF 180 Query 189 GRVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIAFAQRRKTS 248 G VRR GMVSPTVFWPIPRVYSGLVRIDRYETSPWPTD FR++VFEL+D+AFAQRRKTS Sbjct 181 GNVRRYGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDPEFRQQVFELIDVAFAQRRKTS 240 Query 249 RNAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRLLRRSG---------GSDEAT 299 RNAF +WAGSG+ESA+RLLAASIDP+RRGETLSI+DFVRLL+RS + A Sbjct 241 RNAFAEWAGSGNESASRLLAASIDPSRRGETLSINDFVRLLQRSADWHVVPKPESAATAV 300 Query 300 STGRDARAPDI 310 +T DA+ P + Sbjct 301 ATDEDAQVPTL 311 >gi|145222523|ref|YP_001133201.1| dimethyladenosine transferase [Mycobacterium gilvum PYR-GCK] gi|315442971|ref|YP_004075850.1| dimethyladenosine transferase [Mycobacterium sp. Spyr1] gi|226732599|sp|A4T6P3.1|RSMA_MYCGI RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|145215009|gb|ABP44413.1| dimethyladenosine transferase [Mycobacterium gilvum PYR-GCK] gi|315261274|gb|ADT98015.1| dimethyladenosine transferase [Mycobacterium sp. Spyr1] Length=314 Score = 479 bits (1234), Expect = 2e-133, Method: Compositional matrix adjust. Identities = 231/285 (82%), Positives = 258/285 (91%), Gaps = 0/285 (0%) Query 9 LTIRLLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVGPGLG 68 +TIRLLGRTEIR LAK +DFRPRKS GQNFVHDANTVRR+V+AS V+RSD VLEVGPGLG Sbjct 1 MTIRLLGRTEIRHLAKSIDFRPRKSFGQNFVHDANTVRRIVSASSVNRSDHVLEVGPGLG 60 Query 69 SLTLALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDLAAAP 128 SLTLALLDRGA VTAVEIDP+LA++L T+A HSHSEV+RLTV+NRD+L ++ D+ P Sbjct 61 SLTLALLDRGARVTAVEIDPVLATQLPTTIAAHSHSEVNRLTVLNRDILTFKQSDMTEMP 120 Query 129 TAVVANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVKLRFF 188 TA+VANLPYNVAVPALLHLL EFPSIR V VMVQAEVAERLAAEPG K+YGVPS K+RFF Sbjct 121 TALVANLPYNVAVPALLHLLAEFPSIRTVMVMVQAEVAERLAAEPGGKDYGVPSAKVRFF 180 Query 189 GRVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIAFAQRRKTS 248 G VRR GMVSPTVFWPIPRVYSGLVRIDRYETSPWPTD F+ +VFEL+DIAFAQRRKTS Sbjct 181 GNVRRYGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDTEFQEQVFELIDIAFAQRRKTS 240 Query 249 RNAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRLLRRSG 293 RNAF +WAGSG+ESA+RLLAASIDP+RRGETLSI+DFVRLL+RS Sbjct 241 RNAFAEWAGSGNESASRLLAASIDPSRRGETLSINDFVRLLQRSA 285 >gi|119870378|ref|YP_940330.1| dimethyladenosine transferase [Mycobacterium sp. KMS] gi|126437207|ref|YP_001072898.1| dimethyladenosine transferase [Mycobacterium sp. JLS] gi|226732600|sp|A3Q5I0.1|RSMA_MYCSJ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732601|sp|A1UL32.1|RSMA_MYCSK RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|119696467|gb|ABL93540.1| dimethyladenosine transferase [Mycobacterium sp. KMS] gi|126237007|gb|ABO00408.1| dimethyladenosine transferase [Mycobacterium sp. JLS] Length=294 Score = 475 bits (1222), Expect = 5e-132, Method: Compositional matrix adjust. Identities = 231/289 (80%), Positives = 260/289 (90%), Gaps = 0/289 (0%) Query 9 LTIRLLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVGPGLG 68 +TIRLLGRTEIRRLAK++DFRPRKS GQNFVHDANTVRR+V+ASGV R D VLEVGPGLG Sbjct 1 MTIRLLGRTEIRRLAKDIDFRPRKSFGQNFVHDANTVRRIVSASGVHRHDHVLEVGPGLG 60 Query 69 SLTLALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDLAAAP 128 SLTLALLDRGA VTAVEIDPLLA +L T+A+HSHSE++RLTV+N+D+L L DL P Sbjct 61 SLTLALLDRGAHVTAVEIDPLLAQQLPTTIADHSHSEINRLTVLNQDILTLMPSDLENQP 120 Query 129 TAVVANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVKLRFF 188 TA+VANLPYNVAVPALLHLL EFP+IR V VMVQAEVAERLAA+PG K+YGVPS K+RF+ Sbjct 121 TALVANLPYNVAVPALLHLLAEFPTIRSVMVMVQAEVAERLAADPGGKDYGVPSAKVRFY 180 Query 189 GRVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIAFAQRRKTS 248 G VRR GMVSPTVFWPIPRVYSGLVRIDRYETSPWPTD FR +VF+L+DIAFAQRRKTS Sbjct 181 GNVRRYGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDADFRAQVFDLIDIAFAQRRKTS 240 Query 249 RNAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRLLRRSGGSDE 297 RNAF +WAGSG+ESA RLLAASIDP+RRGETL+I DFVRLL+RSG ++E Sbjct 241 RNAFAEWAGSGNESARRLLAASIDPSRRGETLAIADFVRLLQRSGEAEE 289 >gi|108801227|ref|YP_641424.1| dimethyladenosine transferase [Mycobacterium sp. MCS] gi|123178211|sp|Q1B416.1|RSMA_MYCSS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|108771646|gb|ABG10368.1| dimethyladenosine transferase [Mycobacterium sp. MCS] Length=294 Score = 474 bits (1219), Expect = 1e-131, Method: Compositional matrix adjust. Identities = 230/289 (80%), Positives = 260/289 (90%), Gaps = 0/289 (0%) Query 9 LTIRLLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVGPGLG 68 +TIRLLGRTEIRRLAK++DFRPRKS GQNFVHDANTVRR+V+ASGV R D VL+VGPGLG Sbjct 1 MTIRLLGRTEIRRLAKDIDFRPRKSFGQNFVHDANTVRRIVSASGVHRHDHVLKVGPGLG 60 Query 69 SLTLALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDLAAAP 128 SLTLALLDRGA VTAVEIDPLLA +L T+A+HSHSE++RLTV+N+D+L L DL P Sbjct 61 SLTLALLDRGAHVTAVEIDPLLAQQLPTTIADHSHSEINRLTVLNQDILTLMPSDLENQP 120 Query 129 TAVVANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVKLRFF 188 TA+VANLPYNVAVPALLHLL EFP+IR V VMVQAEVAERLAA+PG K+YGVPS K+RF+ Sbjct 121 TALVANLPYNVAVPALLHLLAEFPTIRSVMVMVQAEVAERLAADPGGKDYGVPSAKVRFY 180 Query 189 GRVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIAFAQRRKTS 248 G VRR GMVSPTVFWPIPRVYSGLVRIDRYETSPWPTD FR +VF+L+DIAFAQRRKTS Sbjct 181 GNVRRYGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDADFRAQVFDLIDIAFAQRRKTS 240 Query 249 RNAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRLLRRSGGSDE 297 RNAF +WAGSG+ESA RLLAASIDP+RRGETL+I DFVRLL+RSG ++E Sbjct 241 RNAFAEWAGSGNESARRLLAASIDPSRRGETLAIADFVRLLQRSGEAEE 289 >gi|118473872|ref|YP_889677.1| dimethyladenosine transferase [Mycobacterium smegmatis str. MC2 155] gi|118175159|gb|ABK76055.1| dimethyladenosine transferase [Mycobacterium smegmatis str. MC2 155] Length=297 Score = 452 bits (1163), Expect = 3e-125, Method: Compositional matrix adjust. Identities = 225/297 (76%), Positives = 249/297 (84%), Gaps = 4/297 (1%) Query 22 LAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVGPGLGSLTLALLDRGATV 81 +AKE+DFRPRK+ GQNFVHDANTVRR+V+ASGV R D VLEVGPGLGSLTLALLDRGA V Sbjct 1 MAKEIDFRPRKAFGQNFVHDANTVRRIVSASGVHRHDHVLEVGPGLGSLTLALLDRGARV 60 Query 82 TAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDLAAAPTAVVANLPYNVAV 141 TAVEIDPLLA +L T+A+HSHSE++RLTV+NRD+L L DL PTA+VANLPYNVAV Sbjct 61 TAVEIDPLLARQLPTTIADHSHSEINRLTVLNRDILTLMPGDLEEQPTALVANLPYNVAV 120 Query 142 PALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVKLRFFGRVRRCGMVSPTV 201 PALLHLL EFPSIR V VMVQAEVAERLAAEPG K+YGVPS K+RF+G VRR GMVSPTV Sbjct 121 PALLHLLAEFPSIRTVMVMVQAEVAERLAAEPGGKDYGVPSAKVRFYGNVRRHGMVSPTV 180 Query 202 FWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIAFAQRRKTSRNAFVQWAGSGSE 261 FWPIPRVYSGLVRIDRYETSPWP D+AFR VF L+DI FAQRRKTSRNAF +WAG G+E Sbjct 181 FWPIPRVYSGLVRIDRYETSPWPMDEAFRDEVFNLIDIGFAQRRKTSRNAFAEWAGGGNE 240 Query 262 SANRLLAASIDPARRGETLSIDDFVRLLRRSG---GSDEATSTGR-DARAPDISGHA 314 SA RLLAA IDPARRGETLSI+DFVRLL+R+ G D R A AP +S A Sbjct 241 SAERLLAARIDPARRGETLSINDFVRLLQRTKEALGEDYTKQVARPSASAPSVSAEA 297 >gi|183984448|ref|YP_001852739.1| dimethyladenosine transferase KsgA [Mycobacterium marinum M] gi|183177774|gb|ACC42884.1| dimethyladenosine transferase KsgA [Mycobacterium marinum M] Length=274 Score = 433 bits (1114), Expect = 2e-119, Method: Compositional matrix adjust. Identities = 216/268 (81%), Positives = 240/268 (90%), Gaps = 4/268 (1%) Query 45 VRRVVAASGVSRSDLVLEVGPGLGSLTLALLDRGATVTAVEIDPLLASRLQQTVAEHSHS 104 +R+VV SG++RSD VLEVGPGLGSLTLALL+RGA VTAVEIDP+LA+RL QTVAEHS S Sbjct 1 MRKVVTVSGITRSDQVLEVGPGLGSLTLALLERGAAVTAVEIDPVLAARLPQTVAEHSDS 60 Query 105 EVHRLTVVNRDVLALRREDLAAAPTAVVANLPYNVAVPALLHLLVEFPSIRVVTVMVQAE 164 E+ RLTVV+ D+L LRR+D+A PTAVVANLPYNVAVPALLHLL EFPSIRVVTVMVQAE Sbjct 61 EIGRLTVVHHDILTLRRQDVADQPTAVVANLPYNVAVPALLHLLAEFPSIRVVTVMVQAE 120 Query 165 VAERLAAEPGSKEYGVPSVKLRFFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWP 224 VAERLAAEPG KEYGVPSVK+ F+GRVRRCGMVSPTVFWPIPRVYSGLVRIDRYET+PWP Sbjct 121 VAERLAAEPGGKEYGVPSVKVGFYGRVRRCGMVSPTVFWPIPRVYSGLVRIDRYETTPWP 180 Query 225 TDDAFRRRVFELVDIAFAQRRKTSRNAFVQWAGSGSESANRLLAASIDPARRGETLSIDD 284 TD+ FRR+VFELVDIAFAQRRKTSRNAF++WAGSG+ESANRLLAASIDPARRGETLSI+D Sbjct 181 TDENFRRQVFELVDIAFAQRRKTSRNAFLEWAGSGNESANRLLAASIDPARRGETLSIED 240 Query 285 FVRLLRR----SGGSDEATSTGRDARAP 308 FVRLL R SGG +A G + + P Sbjct 241 FVRLLTRSADTSGGPPDAGVAGDEGQVP 268 >gi|118619728|ref|YP_908060.1| dimethyladenosine transferase [Mycobacterium ulcerans Agy99] gi|118571838|gb|ABL06589.1| dimethyladenosine transferase KsgA [Mycobacterium ulcerans Agy99] Length=274 Score = 432 bits (1110), Expect = 4e-119, Method: Compositional matrix adjust. Identities = 216/268 (81%), Positives = 240/268 (90%), Gaps = 4/268 (1%) Query 45 VRRVVAASGVSRSDLVLEVGPGLGSLTLALLDRGATVTAVEIDPLLASRLQQTVAEHSHS 104 +R+VVA SG +RSD VLEVGPGLGSLTLALL+RGA VTAVEIDP+LA+RL QTVAEHS S Sbjct 1 MRKVVAVSGTTRSDQVLEVGPGLGSLTLALLERGAAVTAVEIDPVLAARLPQTVAEHSDS 60 Query 105 EVHRLTVVNRDVLALRREDLAAAPTAVVANLPYNVAVPALLHLLVEFPSIRVVTVMVQAE 164 E+ RLTVV+ D+L LRR+D+A PTAVVANLPYNVAVPALLHLL EFPSIRVVTVMVQAE Sbjct 61 EIGRLTVVHHDILTLRRQDVADQPTAVVANLPYNVAVPALLHLLAEFPSIRVVTVMVQAE 120 Query 165 VAERLAAEPGSKEYGVPSVKLRFFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWP 224 VAERLAAEPG KEYGVPSVK+ F+GRVRRCGMVSPTVFWPIPRVYSGLVRIDR+ET+PWP Sbjct 121 VAERLAAEPGGKEYGVPSVKVGFYGRVRRCGMVSPTVFWPIPRVYSGLVRIDRHETTPWP 180 Query 225 TDDAFRRRVFELVDIAFAQRRKTSRNAFVQWAGSGSESANRLLAASIDPARRGETLSIDD 284 TD+ FRR+VFELVDIAFAQRRKTSRNAF++WAGSG+ESANRLLAASIDPARRGETLSI+D Sbjct 181 TDENFRRQVFELVDIAFAQRRKTSRNAFLEWAGSGNESANRLLAASIDPARRGETLSIED 240 Query 285 FVRLLRR----SGGSDEATSTGRDARAP 308 FVRLL R SGG +A G + + P Sbjct 241 FVRLLTRSADTSGGPPDAGVAGDEGQVP 268 >gi|333989606|ref|YP_004522220.1| dimethyladenosine transferase KsgA [Mycobacterium sp. JDM601] gi|333485574|gb|AEF34966.1| dimethyladenosine transferase KsgA [Mycobacterium sp. JDM601] Length=380 Score = 409 bits (1052), Expect = 2e-112, Method: Compositional matrix adjust. Identities = 212/287 (74%), Positives = 239/287 (84%), Gaps = 0/287 (0%) Query 9 LTIRLLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVGPGLG 68 LTI LLG +IR LA ELD RPRKSLGQNFVHDANTVRR+VA +G++ D VLEVGPGLG Sbjct 6 LTIGLLGAGDIRALAAELDLRPRKSLGQNFVHDANTVRRIVAGAGITTDDHVLEVGPGLG 65 Query 69 SLTLALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDLAAAP 128 SLTLALL G TV AVE DP+LA RL TVAE++ ++ RLTV++RDVL L RE++A AP Sbjct 66 SLTLALLGHGPTVVAVEKDPVLADRLPATVAEYAPADADRLTVLSRDVLTLHREEVAVAP 125 Query 129 TAVVANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVKLRFF 188 TAVVANLPYNVAVPALLHLL EF +IR V VMVQ EVAERLAAEPG K+YGVPS K RFF Sbjct 126 TAVVANLPYNVAVPALLHLLAEFAAIRTVMVMVQLEVAERLAAEPGGKDYGVPSAKARFF 185 Query 189 GRVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIAFAQRRKTS 248 G VRRCG V P+VFWP+PRV SGLVRIDRY+T+PWP DD FRR VF L+DIAFAQRRKTS Sbjct 186 GEVRRCGTVPPSVFWPVPRVNSGLVRIDRYDTAPWPVDDTFRRAVFTLIDIAFAQRRKTS 245 Query 249 RNAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRLLRRSGGS 295 RNAF +WAGSG++SA L AA IDP RRGETL++ DFVRLL+ SGGS Sbjct 246 RNAFAEWAGSGAQSAALLEAAGIDPGRRGETLAVADFVRLLQVSGGS 292 >gi|169628224|ref|YP_001701873.1| dimethyladenosine transferase [Mycobacterium abscessus ATCC 19977] gi|169240191|emb|CAM61219.1| Probable dimethyladenosine transferase (16S rRNA dimethylase) [Mycobacterium abscessus] Length=301 Score = 404 bits (1037), Expect = 1e-110, Method: Compositional matrix adjust. Identities = 206/295 (70%), Positives = 246/295 (84%), Gaps = 0/295 (0%) Query 1 MCCTSGCALTIRLLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLV 60 M S C LTIRLLGRTEIR+LAK+LDFRP K+LGQNFVHDANT+RR+V+ASGV + D V Sbjct 7 MQRESWCPLTIRLLGRTEIRQLAKDLDFRPTKTLGQNFVHDANTIRRIVSASGVGKGDHV 66 Query 61 LEVGPGLGSLTLALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALR 120 +EVGPGLGSLTL LLD+GA VTAVE+DP+LA RL T+ EHSHSE +R +V+++DVL L Sbjct 67 IEVGPGLGSLTLGLLDKGAAVTAVEVDPVLARRLPTTIKEHSHSEFNRFSVIHQDVLNLT 126 Query 121 REDLAAAPTAVVANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGV 180 D+ PTA+VANLPYNVAVPALL +L EF S++ + VMVQ+EVA+RL AEPGS+ YGV Sbjct 127 PADIQGEPTAMVANLPYNVAVPALLRILTEFDSVKTILVMVQSEVADRLTAEPGSRIYGV 186 Query 181 PSVKLRFFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIA 240 PSVK+R+FG+V+R G VSP VFWPIPRVYSGLVRIDR+ + WP+D FR+ +F+L+DI+ Sbjct 187 PSVKVRYFGKVKRLGTVSPAVFWPIPRVYSGLVRIDRHADAAWPSDAGFRKELFDLIDIS 246 Query 241 FAQRRKTSRNAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRLLRRSGGS 295 FAQRRKTSRNAF +WAGSG ESA RLLAASIDPARRGETL + DF RLL RS S Sbjct 247 FAQRRKTSRNAFAEWAGSGDESARRLLAASIDPARRGETLDVADFARLLERSAIS 301 >gi|289757093|ref|ZP_06516471.1| predicted protein [Mycobacterium tuberculosis T85] gi|289712657|gb|EFD76669.1| predicted protein [Mycobacterium tuberculosis T85] Length=207 Score = 401 bits (1031), Expect = 6e-110, Method: Compositional matrix adjust. Identities = 200/201 (99%), Positives = 200/201 (99%), Gaps = 0/201 (0%) Query 117 LALRREDLAAAPTAVVANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSK 176 LAL REDLAAAPTAVVANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSK Sbjct 7 LALDREDLAAAPTAVVANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSK 66 Query 177 EYGVPSVKLRFFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFEL 236 EYGVPSVKLRFFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFEL Sbjct 67 EYGVPSVKLRFFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFEL 126 Query 237 VDIAFAQRRKTSRNAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRLLRRSGGSD 296 VDIAFAQRRKTSRNAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRLLRRSGGSD Sbjct 127 VDIAFAQRRKTSRNAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRLLRRSGGSD 186 Query 297 EATSTGRDARAPDISGHASAS 317 EATSTGRDARAPDISGHASAS Sbjct 187 EATSTGRDARAPDISGHASAS 207 >gi|54026877|ref|YP_121119.1| dimethyladenosine transferase [Nocardia farcinica IFM 10152] gi|62900491|sp|Q5YPY6.1|RSMA_NOCFA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|54018385|dbj|BAD59755.1| putative ribosomal RNA small subunit dimethyltransferase [Nocardia farcinica IFM 10152] Length=293 Score = 347 bits (890), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 179/276 (65%), Positives = 205/276 (75%), Gaps = 0/276 (0%) Query 13 LLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVGPGLGSLTL 72 LLG E+R LA+ RP K LGQNFVHDANTVRR+V A+GV R+D VLEVGPGLGSLTL Sbjct 14 LLGPAEVRALAERFGVRPTKQLGQNFVHDANTVRRIVTAAGVGRADTVLEVGPGLGSLTL 73 Query 73 ALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDLAAAPTAVV 132 ALLD +V AVEIDP+LA L +TVA+ + + RL VV D L +R DL A+PTA+V Sbjct 74 ALLDVVDSVVAVEIDPVLAEHLPRTVADRAPALAGRLRVVRDDALRVRAADLPASPTALV 133 Query 133 ANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVKLRFFGRVR 192 ANLPYNVAVP LLHLL E P +R VMVQAEVA+RLAAEPGS+ YGVPSVK FFG VR Sbjct 134 ANLPYNVAVPVLLHLLAELPGLRTALVMVQAEVADRLAAEPGSRVYGVPSVKAGFFGTVR 193 Query 193 RCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIAFAQRRKTSRNAF 252 R G V VFWP+PRV SGLVR++RY PWP D+ RRRVFE++D AFAQRRKT R A Sbjct 194 RAGAVGTQVFWPVPRVESGLVRVERYVEPPWPMDEQHRRRVFEIIDAAFAQRRKTLRAAL 253 Query 253 VQWAGSGSESANRLLAASIDPARRGETLSIDDFVRL 288 WAGS +E+ RLLAA IDP RGETL +VRL Sbjct 254 AGWAGSPAEAERRLLAAGIDPTARGETLDTAAYVRL 289 >gi|111022636|ref|YP_705608.1| dimethyladenosine transferase [Rhodococcus jostii RHA1] gi|118600893|sp|Q0S4T6.1|RSMA_RHOSR RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|110822166|gb|ABG97450.1| probable rRNA dimethyladenosine transferase [Rhodococcus jostii RHA1] Length=296 Score = 342 bits (877), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 178/276 (65%), Positives = 200/276 (73%), Gaps = 0/276 (0%) Query 13 LLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVGPGLGSLTL 72 LLG E+R LA+E RP K LGQNFVHDANTVRR+VA +GV R D VLEVGPGLGSLTL Sbjct 16 LLGPAEVRALAEEFGVRPTKQLGQNFVHDANTVRRIVATAGVGREDTVLEVGPGLGSLTL 75 Query 73 ALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDLAAAPTAVV 132 ALLD V AVEIDP LA+RL TVA+ + RLTVV D + ++ ++ PTA+V Sbjct 76 ALLDVVDKVIAVEIDPNLAARLPVTVADRAPELADRLTVVGADAMRVKPSEIPGEPTALV 135 Query 133 ANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVKLRFFGRVR 192 ANLPYNVAVP LLHL E PS+R VMVQAEVA+RLAA PGSK YGVPSVK FFG VR Sbjct 136 ANLPYNVAVPVLLHLFSELPSLRTALVMVQAEVADRLAASPGSKIYGVPSVKANFFGAVR 195 Query 193 RCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIAFAQRRKTSRNAF 252 R G V VFWP+P+V SGLVRIDRY PWP DDA RRRVF ++D AFAQRRKT R A Sbjct 196 RAGAVGRAVFWPVPKVESGLVRIDRYAEPPWPVDDAHRRRVFAVIDAAFAQRRKTLRAAL 255 Query 253 VQWAGSGSESANRLLAASIDPARRGETLSIDDFVRL 288 WAGS +E+ RLL A I P+ RGETL FVRL Sbjct 256 GGWAGSPAEAERRLLEAGIAPSARGETLDAAAFVRL 291 >gi|312138652|ref|YP_004005988.1| rRNA dimethyladenosine transferase ksga [Rhodococcus equi 103S] gi|311887991|emb|CBH47303.1| rRNA dimethyladenosine transferase KsgA [Rhodococcus equi 103S] Length=292 Score = 340 bits (873), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 177/276 (65%), Positives = 201/276 (73%), Gaps = 0/276 (0%) Query 13 LLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVGPGLGSLTL 72 LLG E+R LA+E RP K LGQNFVHDANTVRR+V +GV D VLEVGPGLGSLTL Sbjct 13 LLGPAEVRALAEEFGVRPTKQLGQNFVHDANTVRRIVTVAGVGPEDTVLEVGPGLGSLTL 72 Query 73 ALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDLAAAPTAVV 132 ALLD V AVEIDP LA+RL TVA+ + V RLTVV D + + +D+ A PTAVV Sbjct 73 ALLDVVDRVVAVEIDPKLAARLPATVADRAPELVDRLTVVGADAMRVMPDDVPAEPTAVV 132 Query 133 ANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVKLRFFGRVR 192 ANLPYNVAVP LLHL EFPS+R VMVQAEVA+RLAA PGSK YGVPSVK FFG V+ Sbjct 133 ANLPYNVAVPVLLHLFAEFPSLRTALVMVQAEVADRLAATPGSKVYGVPSVKANFFGTVK 192 Query 193 RCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIAFAQRRKTSRNAF 252 R G V VFWP+P+V SGLVRIDRYE +PWP D RR+VF ++D AFAQRRKT R A Sbjct 193 RAGHVGRAVFWPVPQVESGLVRIDRYEQAPWPIDADHRRKVFAVIDAAFAQRRKTLRAAL 252 Query 253 VQWAGSGSESANRLLAASIDPARRGETLSIDDFVRL 288 WAGS E+ RL+AA I+P+ RGE L FVRL Sbjct 253 AGWAGSPVEAERRLVAAGIEPSTRGEKLDAAAFVRL 288 >gi|226365142|ref|YP_002782925.1| dimethyladenosine transferase [Rhodococcus opacus B4] gi|254807880|sp|C1AXY5.1|RSMA_RHOOB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226243632|dbj|BAH53980.1| dimethyladenosine transferase [Rhodococcus opacus B4] Length=296 Score = 339 bits (869), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 177/276 (65%), Positives = 199/276 (73%), Gaps = 0/276 (0%) Query 13 LLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVGPGLGSLTL 72 LLG E+R LA+E RP K LGQNFVHDANTVRR+VA +GV R D VLEVGPGLGSLTL Sbjct 16 LLGPAEVRALAEEFGVRPTKQLGQNFVHDANTVRRIVATAGVGREDTVLEVGPGLGSLTL 75 Query 73 ALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDLAAAPTAVV 132 ALLD V AVEIDP LA+RL TVA+ + RLTVV D + ++ ++ PTA+V Sbjct 76 ALLDVVDRVIAVEIDPNLAARLPVTVADRAPDLADRLTVVGADAMRVKPSEIPGEPTALV 135 Query 133 ANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVKLRFFGRVR 192 ANLPYNVAVP LLHL E PS+R VMVQAEVA+RLAA PGSK YGVPSVK FFG VR Sbjct 136 ANLPYNVAVPVLLHLFSELPSLRTALVMVQAEVADRLAASPGSKIYGVPSVKANFFGAVR 195 Query 193 RCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIAFAQRRKTSRNAF 252 R G V VFWP+P+V SGLVRIDRY PWP DD RRRVF ++D AFAQRRKT R A Sbjct 196 RAGAVGRAVFWPVPKVESGLVRIDRYAEPPWPVDDENRRRVFAVIDAAFAQRRKTLRAAL 255 Query 253 VQWAGSGSESANRLLAASIDPARRGETLSIDDFVRL 288 WAGS +E+ RLL A I P+ RGETL FVRL Sbjct 256 GGWAGSPAEAERRLLEAGIPPSSRGETLDAAAFVRL 291 >gi|325676279|ref|ZP_08155958.1| dimethyladenosine transferase [Rhodococcus equi ATCC 33707] gi|325552840|gb|EGD22523.1| dimethyladenosine transferase [Rhodococcus equi ATCC 33707] Length=296 Score = 338 bits (867), Expect = 7e-91, Method: Compositional matrix adjust. Identities = 176/276 (64%), Positives = 200/276 (73%), Gaps = 0/276 (0%) Query 13 LLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVGPGLGSLTL 72 LLG E+R LA+E RP K LGQNFVHDANTVRR+V +GV D VLEVGPGLGSLTL Sbjct 17 LLGPAEVRALAEEFGVRPTKQLGQNFVHDANTVRRIVTVAGVGPEDTVLEVGPGLGSLTL 76 Query 73 ALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDLAAAPTAVV 132 ALLD V AVEIDP LA+RL TVA+ + RLTVV D + + +D+ A PTAVV Sbjct 77 ALLDVVDRVVAVEIDPKLAARLPATVADRAPELADRLTVVGADAMRVIPDDVPAEPTAVV 136 Query 133 ANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVKLRFFGRVR 192 ANLPYNVAVP LLHL EFPS+R VMVQAEVA+RLAA PGSK YGVPSVK FFG V+ Sbjct 137 ANLPYNVAVPVLLHLFAEFPSLRTALVMVQAEVADRLAATPGSKVYGVPSVKANFFGTVK 196 Query 193 RCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIAFAQRRKTSRNAF 252 R G V VFWP+P+V SGLVRIDRYE +PWP D RR+VF ++D AFAQRRKT R A Sbjct 197 RAGHVGRAVFWPVPQVESGLVRIDRYEQAPWPIDADHRRKVFAVIDAAFAQRRKTLRAAL 256 Query 253 VQWAGSGSESANRLLAASIDPARRGETLSIDDFVRL 288 WAGS E+ RL+AA I+P+ RGE L FVRL Sbjct 257 AGWAGSPVEAERRLVAAGIEPSTRGEKLDAAAFVRL 292 >gi|226307847|ref|YP_002767807.1| dimethyladenosine transferase [Rhodococcus erythropolis PR4] gi|229494958|ref|ZP_04388709.1| dimethyladenosine transferase [Rhodococcus erythropolis SK121] gi|259494255|sp|C1A383.1|RSMA_RHOE4 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226186964|dbj|BAH35068.1| dimethyladenosine transferase [Rhodococcus erythropolis PR4] gi|229318182|gb|EEN84052.1| dimethyladenosine transferase [Rhodococcus erythropolis SK121] Length=299 Score = 335 bits (858), Expect = 8e-90, Method: Compositional matrix adjust. Identities = 171/276 (62%), Positives = 198/276 (72%), Gaps = 0/276 (0%) Query 13 LLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVGPGLGSLTL 72 LLG E+R LA+E RP K LGQNFVHDANTVRR+V +GV+R D+VLEVGPGLGSLT+ Sbjct 20 LLGPVEVRALAEEFGVRPTKQLGQNFVHDANTVRRIVTTAGVTRDDVVLEVGPGLGSLTM 79 Query 73 ALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDLAAAPTAVV 132 AL+D V AVEIDP LA+RL +TVAE + RLTVV D + + + PTA+V Sbjct 80 ALMDVVDRVIAVEIDPNLAARLPKTVAERAPELADRLTVVEADAMRVLPSQIPGEPTALV 139 Query 133 ANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVKLRFFGRVR 192 ANLPYNVAVP LLHL PS+R VMVQAEVA+RLAA+PGSK YGVPSVK FFG VR Sbjct 140 ANLPYNVAVPVLLHLFASLPSLRTALVMVQAEVADRLAADPGSKIYGVPSVKANFFGEVR 199 Query 193 RCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIAFAQRRKTSRNAF 252 R G V VFWP+P+V SGLVRIDRY PWP D+ R++VF +D AFAQRRKT R A Sbjct 200 RAGAVGRNVFWPVPKVESGLVRIDRYAEPPWPMDEKHRKQVFAAIDAAFAQRRKTLRAAL 259 Query 253 VQWAGSGSESANRLLAASIDPARRGETLSIDDFVRL 288 WAGS +E+ RLLAA I+P RGE L FVRL Sbjct 260 SGWAGSPAEAERRLLAAGIEPQTRGEMLDAAAFVRL 295 >gi|262201474|ref|YP_003272682.1| dimethyladenosine transferase [Gordonia bronchialis DSM 43247] gi|262084821|gb|ACY20789.1| dimethyladenosine transferase [Gordonia bronchialis DSM 43247] Length=305 Score = 334 bits (857), Expect = 9e-90, Method: Compositional matrix adjust. Identities = 175/277 (64%), Positives = 205/277 (75%), Gaps = 2/277 (0%) Query 12 RLLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVGPGLGSLT 71 RLLG +IR+LA E+ RP K+LGQNFVHDANTVRR+VA SGV D+VLEVGPGLGSLT Sbjct 27 RLLGPAQIRQLAAEVGVRPTKTLGQNFVHDANTVRRIVAESGVGADDVVLEVGPGLGSLT 86 Query 72 LALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDLAAAPTAV 131 LALL++ V AVEIDP+LA RL +T+AE + + V+ D L + R+DL APTA+ Sbjct 87 LALLEQAGRVVAVEIDPVLAQRLPRTIAERAAARQGDFEVITADALRVTRDDLPVAPTAL 146 Query 132 VANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVKLRFFGRV 191 VANLPYNVAVP LLHLL FP IR VMVQAEVA+RLAAEPGS+ YGVPSVK R+ G V Sbjct 147 VANLPYNVAVPVLLHLLAVFPEIRTALVMVQAEVADRLAAEPGSRTYGVPSVKARYHGTV 206 Query 192 RRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIAFAQRRKTSRNA 251 RR G V +VFWP P+V SGLVRI+R +T +P DD R VF +VD AFAQRRKT R+A Sbjct 207 RRAGAVGRSVFWPEPKVESGLVRIERTDT--YPVDDELRGAVFAVVDAAFAQRRKTMRSA 264 Query 252 FVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRL 288 WAGS +E+ RL AA IDP RGE L + DFVRL Sbjct 265 LAGWAGSPAEAERRLRAAGIDPGIRGERLGVADFVRL 301 >gi|343925258|ref|ZP_08764785.1| ribosomal RNA small subunit methyltransferase A [Gordonia alkanivorans NBRC 16433] gi|343764855|dbj|GAA11711.1| ribosomal RNA small subunit methyltransferase A [Gordonia alkanivorans NBRC 16433] Length=300 Score = 333 bits (853), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 174/279 (63%), Positives = 202/279 (73%), Gaps = 2/279 (0%) Query 12 RLLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVGPGLGSLT 71 RLLG +IR LA E+ RP K+LGQNFVHDANTVRR+V ASGV D+VLEVGPGLGSLT Sbjct 22 RLLGPAQIRDLAAEVGVRPTKTLGQNFVHDANTVRRIVTASGVGSDDVVLEVGPGLGSLT 81 Query 72 LALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDLAAAPTAV 131 LALL V A+EIDP+LA R+ QTVAE++ ++ VV D L + R+DL PTA+ Sbjct 82 LALLGTAGRVVAIEIDPILAQRIPQTVAEYAPAQSGNFDVVLADALQVTRDDLPVVPTAL 141 Query 132 VANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVKLRFFGRV 191 VANLPYNV+VP LLHLL FP I VMVQAEVA+RLAA PGS+ YGVPSVK R+ GRV Sbjct 142 VANLPYNVSVPVLLHLLGLFPEITTALVMVQAEVADRLAAPPGSRTYGVPSVKARYHGRV 201 Query 192 RRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIAFAQRRKTSRNA 251 R G V VFWP P+V SGLVRI+R T +P D FRR VF ++D AFAQRRKT R+A Sbjct 202 SRAGAVGRNVFWPEPKVESGLVRIER--TDDYPIDTVFRRTVFAVIDAAFAQRRKTMRSA 259 Query 252 FVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRLLR 290 WAGS +E+ RL AA IDP RGE L +DDFVRL R Sbjct 260 LAGWAGSPAEAERRLRAADIDPGIRGEKLDVDDFVRLAR 298 >gi|337290347|ref|YP_004629368.1| dimethyladenosine transferase [Corynebacterium ulcerans BR-AD22] gi|334696463|gb|AEG81260.1| dimethyladenosine transferase [Corynebacterium ulcerans 809] gi|334698653|gb|AEG83449.1| dimethyladenosine transferase [Corynebacterium ulcerans BR-AD22] Length=301 Score = 320 bits (820), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 169/294 (58%), Positives = 205/294 (70%), Gaps = 3/294 (1%) Query 2 CCTSGCALTIRLLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLVL 61 C T G RLLG EIR LA++LD P K LGQNFVHD NTVR +V+A+ ++ D V+ Sbjct 9 CRTMGENDHARLLGPAEIRHLAEKLDVTPTKKLGQNFVHDPNTVRMIVSAADLTADDHVV 68 Query 62 EVGPGLGSLTLALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALRR 121 E+GPGLGSLTLALLD +VTAVEIDP LA +L TVAE + RLT+V++D L + Sbjct 69 EIGPGLGSLTLALLDTARSVTAVEIDPRLAEQLPTTVAERAPMFADRLTLVHKDALQITP 128 Query 122 EDLAAAPTAVVANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVP 181 E++ PTA+VANLPYNV+VP LLH L FPSI+ V VMVQAEVA+RLAA+PG+K YGVP Sbjct 129 EEIDQ-PTALVANLPYNVSVPVLLHFLQIFPSIQRVLVMVQAEVADRLAAQPGTKVYGVP 187 Query 182 SVKLRFFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRY--ETSPWPTDDAFRRRVFELVDI 239 SVK F+G VRR G + VFWP P++ SGLVRID + + PWP D R +VF L+D Sbjct 188 SVKASFYGAVRRAGSIGKNVFWPAPKIESGLVRIDVFAQDEQPWPVGDELRSQVFPLIDA 247 Query 240 AFAQRRKTSRNAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRLLRRSG 293 AFAQRRKT R A + GSG + LL A IDP RGE L + DFVRL +R G Sbjct 248 AFAQRRKTLRAALSGYYGSGVAAEQALLGAGIDPTLRGEKLDVADFVRLAQRRG 301 >gi|326383797|ref|ZP_08205482.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Gordonia neofelifaecis NRRL B-59395] gi|326197561|gb|EGD54750.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Gordonia neofelifaecis NRRL B-59395] Length=311 Score = 319 bits (817), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 168/279 (61%), Positives = 195/279 (70%), Gaps = 2/279 (0%) Query 12 RLLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVGPGLGSLT 71 RLLG EIR LA ELD RP K+LGQNFVHDANTVRR+V ASG+ D+VLEVGPGLGSLT Sbjct 22 RLLGPAEIRALAAELDVRPTKTLGQNFVHDANTVRRIVTASGIGADDVVLEVGPGLGSLT 81 Query 72 LALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDLAAAPTAV 131 LALL V AVEID LA+RL +T+AE + + VV D L + DL PTA+ Sbjct 82 LALLAEAGRVVAVEIDRKLAARLPRTIAEFAPGQAANFDVVTADALGVLPGDLPQTPTAL 141 Query 132 VANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVKLRFFGRV 191 VANLPYNVAVP LLHL+ +FP+IR VMVQAEVA+RLAA PG + YGVPSVK RFFG V Sbjct 142 VANLPYNVAVPVLLHLMAQFPTIRTALVMVQAEVADRLAATPGGRIYGVPSVKARFFGDV 201 Query 192 RRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIAFAQRRKTSRNA 251 R G + VFWP P++ SGLVRIDR + + TD A R F ++D AFAQRRKT R+A Sbjct 202 ARAGSIGKHVFWPEPKIESGLVRIDRRDA--FGTDPALRSETFAVIDAAFAQRRKTLRSA 259 Query 252 FVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRLLR 290 WAGS + L AA IDP RGE ++DDFVRL R Sbjct 260 LSSWAGSAPHAEELLRAAEIDPGLRGERCTVDDFVRLAR 298 >gi|38233472|ref|NP_939239.1| dimethyladenosine transferase [Corynebacterium diphtheriae NCTC 13129] gi|62900542|sp|Q6NIA2.1|RSMA_CORDI RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|38199732|emb|CAE49392.1| Putative dimethyladenosine transferase [Corynebacterium diphtheriae] Length=295 Score = 315 bits (806), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 166/289 (58%), Positives = 202/289 (70%), Gaps = 3/289 (1%) Query 12 RLLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVGPGLGSLT 71 +LLG EIR+LA++LD P K LGQNFVHD NTVR +V+A+ ++ D V+EVGPGLGSLT Sbjct 8 QLLGPVEIRQLAEKLDVTPTKKLGQNFVHDPNTVRMIVSAADLNSDDHVIEVGPGLGSLT 67 Query 72 LALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDLAAAPTAV 131 LALLD VTAVEIDP LA +L TVAE + RL ++++D L + +D+ PTA+ Sbjct 68 LALLDTAQKVTAVEIDPRLAQQLPLTVAERAGQFADRLNLIHKDALTVAPDDIDH-PTAL 126 Query 132 VANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVKLRFFGRV 191 VANLPYNV+VP LLHLL FP+IR V VMVQAEVA+RLAA+PG+K YGVPSVK F+G V Sbjct 127 VANLPYNVSVPVLLHLLQIFPTIRRVLVMVQAEVADRLAADPGNKVYGVPSVKASFYGNV 186 Query 192 RRCGMVSPTVFWPIPRVYSGLVRIDRY--ETSPWPTDDAFRRRVFELVDIAFAQRRKTSR 249 RR G + VFWP P++ SGLVRID + E PWP D R+ VF L+D AFAQRRKT R Sbjct 187 RRAGSIGKNVFWPAPKIESGLVRIDVFDPEHQPWPVTDDMRKAVFPLIDSAFAQRRKTLR 246 Query 250 NAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRLLRRSGGSDEA 298 A GSG + L A IDP RGE L I DFVRL R + ++A Sbjct 247 AALSGHFGSGPAAEEALRTAGIDPILRGEKLDIADFVRLARVTAAQEQA 295 >gi|300858098|ref|YP_003783081.1| dimethyladenosine transferase [Corynebacterium pseudotuberculosis FRC41] gi|300685552|gb|ADK28474.1| dimethyladenosine transferase [Corynebacterium pseudotuberculosis FRC41] gi|302205822|gb|ADL10164.1| Dimethyladenosine transferase [Corynebacterium pseudotuberculosis C231] gi|302330381|gb|ADL20575.1| Dimethyladenosine transferase [Corynebacterium pseudotuberculosis 1002] gi|308276057|gb|ADO25956.1| dimethyl adenosine transferase [Corynebacterium pseudotuberculosis I19] gi|341824495|gb|AEK92016.1| Dimethyladenosine transferase [Corynebacterium pseudotuberculosis PAT10] Length=290 Score = 313 bits (803), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 163/279 (59%), Positives = 200/279 (72%), Gaps = 3/279 (1%) Query 12 RLLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVGPGLGSLT 71 RLLG EIR LA++LD P K LGQNFVHD NTVR +V+A+ ++ D V+E+GPGLGSLT Sbjct 8 RLLGPAEIRHLAEKLDVTPTKKLGQNFVHDPNTVRMIVSAADLTADDHVVEIGPGLGSLT 67 Query 72 LALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDLAAAPTAV 131 LALLD +VTAVEIDP LA +L TVAE + RLT+V++D L + E++ PTA+ Sbjct 68 LALLDTARSVTAVEIDPRLAEQLPMTVAERAPMFSDRLTLVHKDALQVTAEEIGQ-PTAL 126 Query 132 VANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVKLRFFGRV 191 VANLPYNV+VP LLH L FPSI+ V VMVQAEVA+RLAA+PG+K YGVPSVK F+G V Sbjct 127 VANLPYNVSVPVLLHFLQIFPSIQRVLVMVQAEVADRLAAQPGTKVYGVPSVKASFYGSV 186 Query 192 RRCGMVSPTVFWPIPRVYSGLVRIDRY--ETSPWPTDDAFRRRVFELVDIAFAQRRKTSR 249 RR G + VFWP P++ SGLVRID + + PW D R +VF L+D AFAQRRKT R Sbjct 187 RRAGSIGKNVFWPAPKIESGLVRIDVFTQDNQPWEVGDELRSQVFPLIDAAFAQRRKTLR 246 Query 250 NAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRL 288 A + GSG+ + + LL A IDP RGE L + DFVRL Sbjct 247 AALSGYYGSGAAAESALLGAGIDPTLRGEKLDVADFVRL 285 >gi|227501495|ref|ZP_03931544.1| dimethyladenosine transferase [Corynebacterium accolens ATCC 49725] gi|227077520|gb|EEI15483.1| dimethyladenosine transferase [Corynebacterium accolens ATCC 49725] Length=287 Score = 310 bits (795), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 167/288 (58%), Positives = 202/288 (71%), Gaps = 5/288 (1%) Query 1 MCCTSGCALTIRLLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLV 60 M + G A LG EIR LA++LD P K LGQNF+HD NT+RR++AA+ + +D V Sbjct 1 MTDSPGAAF----LGPVEIRALAEKLDITPTKKLGQNFLHDPNTIRRIIAAADLDPTDHV 56 Query 61 LEVGPGLGSLTLALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALR 120 +EVGPGLGSLTL L++ +TAVEIDP LA++L +TV E + RL VV +D L + Sbjct 57 VEVGPGLGSLTLGLVETVQDLTAVEIDPRLAAQLPETVGERAEDYAKRLRVVEKDALRVT 116 Query 121 REDLAAAPTAVVANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGV 180 ED+AA PTA+VANLPYNVAVP LLH L FPSIR V VMVQ EVA+RLAAEPGSK YGV Sbjct 117 SEDVAA-PTALVANLPYNVAVPVLLHFLETFPSIRRVLVMVQLEVAQRLAAEPGSKIYGV 175 Query 181 PSVKLRFFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIA 240 PSVK F+G V + G + VFWP P + SGLVRID ++T PWP DDA R V+ LVD A Sbjct 176 PSVKAGFYGAVSQAGTIGKNVFWPAPNIASGLVRIDVFDTPPWPVDDAARAAVWPLVDAA 235 Query 241 FAQRRKTSRNAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRL 288 FAQRRKT R A GSG+ + L AA IDP +RGE L++ DFVRL Sbjct 236 FAQRRKTLRAALSGHYGSGAAAEEALRAAGIDPKQRGEKLAVADFVRL 283 >gi|19552136|ref|NP_600138.1| dimethyladenosine transferase [Corynebacterium glutamicum ATCC 13032] gi|62389800|ref|YP_225202.1| dimethyladenosine transferase [Corynebacterium glutamicum ATCC 13032] gi|27151568|sp|Q8NRY1.1|RSMA_CORGL RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|21323676|dbj|BAB98303.1| Dimethyladenosine transferase (rRNA methylation) [Corynebacterium glutamicum ATCC 13032] gi|41325135|emb|CAF19616.1| PUTATIVE DIMETHYLADENOSINE TRANSFERASE [Corynebacterium glutamicum ATCC 13032] Length=293 Score = 309 bits (792), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 156/277 (57%), Positives = 201/277 (73%), Gaps = 1/277 (0%) Query 12 RLLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVGPGLGSLT 71 +LLG EIR LA++LD P K LGQNFVHD NTVRR+VAA+ ++ D V+EVGPGLGSLT Sbjct 8 QLLGPVEIRALAEKLDVTPTKKLGQNFVHDPNTVRRIVAAAELTPDDHVVEVGPGLGSLT 67 Query 72 LALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDLAAAPTAV 131 LAL++ A+VTAVEIDP LA+ L +T + + H+L++V +D L +++ D+A PTA+ Sbjct 68 LALVESAASVTAVEIDPRLAAELPETFQWRAPALAHKLSIVLKDALKVQQSDMAVQPTAL 127 Query 132 VANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVKLRFFGRV 191 VANLPYNV+VP LLH++ EFP+I V VMVQAEVA+RLAA+PGSK YGVPSVK F+G V Sbjct 128 VANLPYNVSVPVLLHMMEEFPTINKVLVMVQAEVADRLAADPGSKIYGVPSVKASFYGPV 187 Query 192 RRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIAFAQRRKTSRNA 251 R G + VFWP P++ SGLV+I R +T+ W DD R++V+ ++D AF QRRKT R A Sbjct 188 TRAGSIGKNVFWPAPKIESGLVKIVREDTA-WKQDDETRKKVWPIIDAAFLQRRKTLRAA 246 Query 252 FVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRL 288 GSG + L AA IDP RGE L + D+VRL Sbjct 247 LSGHYGSGQAAEEALRAADIDPTLRGEKLDVTDYVRL 283 >gi|344043639|gb|EGV39328.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Corynebacterium glutamicum S9114] Length=293 Score = 308 bits (790), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 156/277 (57%), Positives = 200/277 (73%), Gaps = 1/277 (0%) Query 12 RLLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVGPGLGSLT 71 +LLG EIR LA++LD P K LGQNFVHD NTVRR+VAA+ ++ D V+EVGPGLGSLT Sbjct 8 QLLGPVEIRALAEKLDVTPTKKLGQNFVHDPNTVRRIVAAAELTPDDHVVEVGPGLGSLT 67 Query 72 LALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDLAAAPTAV 131 LAL++ A+VTAVEIDP LA+ L +T + + H+L++V +D L +++ D+ PTA+ Sbjct 68 LALVESAASVTAVEIDPRLAAELPETFQWRAAALAHKLSIVLKDALKVQQSDMEVQPTAL 127 Query 132 VANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVKLRFFGRV 191 VANLPYNV+VP LLH+L EFP+I V VMVQAEVA+RLAA+PGSK YGVPSVK F+G V Sbjct 128 VANLPYNVSVPVLLHMLEEFPTINKVLVMVQAEVADRLAADPGSKIYGVPSVKASFYGPV 187 Query 192 RRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIAFAQRRKTSRNA 251 R G + VFWP P++ SGLV+I R +T+ W DD R++V+ ++D AF QRRKT R A Sbjct 188 TRAGSIGKNVFWPAPKIESGLVKIVREDTA-WKQDDETRKKVWPIIDAAFLQRRKTLRAA 246 Query 252 FVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRL 288 GSG + L AA IDP RGE L + D+VRL Sbjct 247 LSGHYGSGQAAEEALRAADIDPTLRGEKLDVTDYVRL 283 >gi|145295068|ref|YP_001137889.1| dimethyladenosine transferase [Corynebacterium glutamicum R] gi|166221660|sp|A4QCP0.1|RSMA_CORGB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|140844988|dbj|BAF53987.1| hypothetical protein [Corynebacterium glutamicum R] Length=293 Score = 308 bits (789), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 156/277 (57%), Positives = 200/277 (73%), Gaps = 1/277 (0%) Query 12 RLLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVGPGLGSLT 71 +LLG EIR LA++LD P K LGQNFVHD NTVRR+VAA+ ++ D V+EVGPGLGSLT Sbjct 8 QLLGPVEIRALAEKLDVTPTKKLGQNFVHDPNTVRRIVAAAELTPDDHVVEVGPGLGSLT 67 Query 72 LALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDLAAAPTAV 131 LAL++ A+VTAVEIDP LA+ L +T + + H+L++V +D L +++ D+ PTA+ Sbjct 68 LALVESAASVTAVEIDPRLAAELPETFQWRAPALAHKLSIVLKDALKVQQSDMEVQPTAL 127 Query 132 VANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVKLRFFGRV 191 VANLPYNV+VP LLH+L EFP+I V VMVQAEVA+RLAA+PGSK YGVPSVK F+G V Sbjct 128 VANLPYNVSVPVLLHMLEEFPTINKVLVMVQAEVADRLAADPGSKIYGVPSVKASFYGPV 187 Query 192 RRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIAFAQRRKTSRNA 251 R G + VFWP P++ SGLV+I R +T+ W DD R++V+ ++D AF QRRKT R A Sbjct 188 TRAGSIGKNVFWPAPKIESGLVKIVREDTA-WKQDDETRKKVWPIIDAAFLQRRKTLRAA 246 Query 252 FVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRL 288 GSG + L AA IDP RGE L + D+VRL Sbjct 247 LSGHYGSGQAAEEALRAADIDPTLRGEKLDVTDYVRL 283 >gi|306835652|ref|ZP_07468661.1| dimethyladenosine transferase [Corynebacterium accolens ATCC 49726] gi|304568496|gb|EFM44052.1| dimethyladenosine transferase [Corynebacterium accolens ATCC 49726] Length=287 Score = 307 bits (787), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 166/288 (58%), Positives = 201/288 (70%), Gaps = 5/288 (1%) Query 1 MCCTSGCALTIRLLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLV 60 M + G AL LG EIR LA++LD P K LGQNF+HD NT+RR++AA+ + +D V Sbjct 1 MTDSPGAAL----LGPVEIRALAEKLDITPTKKLGQNFLHDPNTIRRIIAAADLDPADRV 56 Query 61 LEVGPGLGSLTLALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALR 120 +EVGPGLGSLTL L++ +TAVEIDP LA++L +TV E + RL VV +D L + Sbjct 57 VEVGPGLGSLTLGLVETVEDLTAVEIDPRLAAQLPETVGERAADYAERLRVVEKDALRVT 116 Query 121 REDLAAAPTAVVANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGV 180 ED+ A PTA+VANLPYNVAVP LLH L FPSIR V VMVQ EVA+RLAA PGSK YGV Sbjct 117 SEDVTA-PTALVANLPYNVAVPVLLHFLETFPSIRRVLVMVQLEVAQRLAAAPGSKIYGV 175 Query 181 PSVKLRFFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIA 240 PSVK F+G V + G + VFWP P + SGLVRID ++T PWP DDA R V+ LVD A Sbjct 176 PSVKAGFYGTVSQAGTIGKNVFWPAPNIASGLVRIDVFDTPPWPVDDAARAAVWPLVDAA 235 Query 241 FAQRRKTSRNAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRL 288 FAQRRKT R A GSG+ + L AA IDP +RGE L++ DFVRL Sbjct 236 FAQRRKTLRAALSGHYGSGAAAEEALRAAGIDPQQRGEKLAVADFVRL 283 >gi|25027528|ref|NP_737582.1| dimethyladenosine transferase [Corynebacterium efficiens YS-314] gi|259507064|ref|ZP_05749964.1| dimethyladenosine transferase [Corynebacterium efficiens YS-314] gi|33516940|sp|Q8FQZ5.1|RSMA_COREF RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|23492810|dbj|BAC17782.1| putative dimethyladenosine transferase [Corynebacterium efficiens YS-314] gi|259165342|gb|EEW49896.1| dimethyladenosine transferase [Corynebacterium efficiens YS-314] Length=289 Score = 306 bits (785), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 159/277 (58%), Positives = 195/277 (71%), Gaps = 1/277 (0%) Query 12 RLLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVGPGLGSLT 71 +LLG EIR LA++LD P K LGQNFVHD NTVRR+V A+ ++ D V+EVGPGLGSLT Sbjct 8 QLLGPVEIRALAEKLDVTPTKKLGQNFVHDPNTVRRIVTAADLTPEDHVVEVGPGLGSLT 67 Query 72 LALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDLAAAPTAV 131 LAL+++ A+VTAVEIDP LA+ L T A + +LTVV +D L +++ D PTA+ Sbjct 68 LALVEKAASVTAVEIDPRLAAELPATFAWRAPGLADKLTVVQKDALKVQQSDFTTQPTAL 127 Query 132 VANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVKLRFFGRV 191 VANLPYNV+VP LLH+L EFPSI V VMVQ EVA+RLAA PGSK YGVPSVK F+G V Sbjct 128 VANLPYNVSVPVLLHMLAEFPSITKVLVMVQLEVADRLAAVPGSKIYGVPSVKASFYGEV 187 Query 192 RRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIAFAQRRKTSRNA 251 + G + VFWP P++ SGLV+I R T PWP DDA R +V+ ++D AF QRRKT R A Sbjct 188 SKAGTIGKHVFWPAPQIESGLVKIIRTHT-PWPQDDATRAKVWPVIDAAFLQRRKTLRAA 246 Query 252 FVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRL 288 GS S + L AA IDP RGE L + D+VRL Sbjct 247 LSGHFGSASAAEEALRAADIDPQLRGERLDVADYVRL 283 >gi|227548244|ref|ZP_03978293.1| dimethyladenosine transferase [Corynebacterium lipophiloflavum DSM 44291] gi|227079667|gb|EEI17630.1| dimethyladenosine transferase [Corynebacterium lipophiloflavum DSM 44291] Length=284 Score = 306 bits (784), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 169/283 (60%), Positives = 198/283 (70%), Gaps = 5/283 (1%) Query 13 LLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVGPGLGSLTL 72 LLG E+ +LA EL P K LGQNFVHD NTVRR+VAA+ ++ D+V+EVGPGLGSLTL Sbjct 6 LLGPVEVHQLASELGVTPTKKLGQNFVHDPNTVRRIVAAAKLNADDVVVEVGPGLGSLTL 65 Query 73 ALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDLAAAPTAVV 132 L+D + V A+EIDP LA RL +TV E + + RL VV D L +RR D++ APTA+V Sbjct 66 GLVDSVSHVVALEIDPRLAGRLARTVEERADAFATRLEVVCADALRVRRSDVSHAPTALV 125 Query 133 ANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVKLRFFGRVR 192 ANLPYNV+VP LLHLL EFP+IR V VMVQ EVA+RLAAEPGSK YGVPSVK F+GRV Sbjct 126 ANLPYNVSVPVLLHLLEEFPTIRRVLVMVQKEVADRLAAEPGSKIYGVPSVKAAFYGRVT 185 Query 193 RCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIAFAQRRKTSRNAF 252 R G + VFWP P + SGLVRID P D R VF LVD AFAQRRKT R+ Sbjct 186 RAGTIGKNVFWPAPNIESGLVRID---VDPK-VDRTLRASVFPLVDAAFAQRRKTLRSTL 241 Query 253 VQWAGSGSESANRLLAASIDPARRGETLSIDDFVRLLRRSGGS 295 GS + L+AA IDP RGE LS+DDFVR L RSGG+ Sbjct 242 AGVYGSPVAAEQALVAAGIDPGLRGEKLSVDDFVR-LARSGGA 283 >gi|300781662|ref|ZP_07091516.1| dimethyladenosine transferase [Corynebacterium genitalium ATCC 33030] gi|300533369|gb|EFK54430.1| dimethyladenosine transferase [Corynebacterium genitalium ATCC 33030] Length=302 Score = 305 bits (781), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 167/282 (60%), Positives = 197/282 (70%), Gaps = 9/282 (3%) Query 10 TIRLLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSR---SDLVLEVGPG 66 T +LLG EIR LA+EL+ P K LGQNFVHD NTVRR+VAA+ + +++VLEVGPG Sbjct 22 TSQLLGPAEIRALAEELEVSPTKKLGQNFVHDPNTVRRIVAAADLEEPGIAEMVLEVGPG 81 Query 67 LGSLTLALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDLAA 126 LGSLTL L+D V AVEIDP LA++L +T AE S ++ +LTV+N D L + DL Sbjct 82 LGSLTLGLIDVANHVVAVEIDPRLAAKLPETAAERSDAD--KLTVLNMDALMVSYADLDR 139 Query 127 APTAVVANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVKLR 186 PTA+VANLPYNVAVP LLHLL EFPSIR V VMVQ EVA+RLAA PGSK YGVPSVK Sbjct 140 EPTALVANLPYNVAVPVLLHLLEEFPSIRRVLVMVQLEVADRLAAAPGSKIYGVPSVKAS 199 Query 187 FFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIAFAQRRK 246 F+G VR+ G + VFWP P + SGLVRID ET D + R +VF L+D AFAQRRK Sbjct 200 FYGDVRKAGTIGKNVFWPAPNIESGLVRIDVNET----FDRSLRPKVFPLIDAAFAQRRK 255 Query 247 TSRNAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRL 288 T R GSG + L AA IDP RGE LS++DFVRL Sbjct 256 TLRACLTGVYGSGPAAEEALRAAGIDPGLRGEKLSVEDFVRL 297 >gi|255325442|ref|ZP_05366546.1| dimethyladenosine transferase [Corynebacterium tuberculostearicum SK141] gi|255297528|gb|EET76841.1| dimethyladenosine transferase [Corynebacterium tuberculostearicum SK141] Length=300 Score = 303 bits (777), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 164/288 (57%), Positives = 202/288 (71%), Gaps = 5/288 (1%) Query 1 MCCTSGCALTIRLLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLV 60 M ++G AL LG EIR LA++LD P K LGQNF+HD NT+RR+VAA+ + +D V Sbjct 15 MTDSTGAAL----LGPVEIRALAEKLDIVPTKKLGQNFLHDPNTIRRIVAAAELDPTDRV 70 Query 61 LEVGPGLGSLTLALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALR 120 LEVGPGLGSLTL L++ VTAVEID LA++L TVAE + RL VV +D L + Sbjct 71 LEVGPGLGSLTLGLVEAVGDVTAVEIDSRLAAQLPDTVAERAPEYAQRLRVVEKDALRVT 130 Query 121 REDLAAAPTAVVANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGV 180 D+ PTA+VANLPYNVAVP LLHLL FPSIR V VMVQ EVA+RLAA+PGSK YGV Sbjct 131 DSDVTE-PTALVANLPYNVAVPVLLHLLETFPSIRRVLVMVQLEVADRLAAQPGSKVYGV 189 Query 181 PSVKLRFFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIA 240 PSVK F+G+V + G + VFWP P + SGLVRID +E +PWP D R +V+ ++D A Sbjct 190 PSVKAGFYGKVSKAGTIGKNVFWPAPNIESGLVRIDVFEDAPWPITDESRSKVWPVIDAA 249 Query 241 FAQRRKTSRNAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRL 288 FAQRRKT R A GSG+ + L AA IDP +RGE L+++DFVRL Sbjct 250 FAQRRKTLRAALSGHFGSGAAAEEALRAADIDPKQRGEKLAVEDFVRL 297 >gi|256374794|ref|YP_003098454.1| dimethyladenosine transferase [Actinosynnema mirum DSM 43827] gi|255919097|gb|ACU34608.1| dimethyladenosine transferase [Actinosynnema mirum DSM 43827] Length=298 Score = 303 bits (776), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 161/276 (59%), Positives = 194/276 (71%), Gaps = 3/276 (1%) Query 13 LLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVGPGLGSLTL 72 LLG ++RRLA ELD RP K LGQNFVHD NTVR++VAA+ + D+VLEVGPGLGSLTL Sbjct 19 LLGPADVRRLAAELDVRPTKKLGQNFVHDPNTVRKIVAAANLRPDDVVLEVGPGLGSLTL 78 Query 73 ALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDLAAAPTAVV 132 ALL A + AVEIDP+LA+RL T AE + S L+VV D + + L APTA+V Sbjct 79 ALLPACADLVAVEIDPVLAARLPTTAAERAPSLAANLSVVTADAMRVTAAQLPHAPTALV 138 Query 133 ANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVKLRFFGRVR 192 ANLPYNVAVP +LHLL E PS+R VMVQ+EVA+R+AA PGSK YGVPSVKL ++ R Sbjct 139 ANLPYNVAVPVVLHLLAELPSLRTGLVMVQSEVADRMAAGPGSKVYGVPSVKLAWYADAR 198 Query 193 RCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIAFAQRRKTSRNAF 252 R G V +VFWP+P V S LV R + P D R +F LVD AFAQRRKT R A Sbjct 199 RAGPVGRSVFWPVPNVDSALVGFTRRDA---PLSDVPREVLFPLVDAAFAQRRKTLRAAL 255 Query 253 VQWAGSGSESANRLLAASIDPARRGETLSIDDFVRL 288 WAGS +E+ RL+AA +DP+ RGE LS+ DFVR+ Sbjct 256 SGWAGSAAEAERRLVAAGVDPSARGEQLSVADFVRI 291 >gi|311740851|ref|ZP_07714678.1| dimethyladenosine transferase [Corynebacterium pseudogenitalium ATCC 33035] gi|311304371|gb|EFQ80447.1| dimethyladenosine transferase [Corynebacterium pseudogenitalium ATCC 33035] Length=300 Score = 303 bits (775), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 163/288 (57%), Positives = 202/288 (71%), Gaps = 5/288 (1%) Query 1 MCCTSGCALTIRLLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLV 60 M ++G AL LG EIR LA++LD P K LGQNF+HD NT+RR+VAA+ + +D V Sbjct 15 MTDSTGAAL----LGPVEIRALAEKLDIVPTKKLGQNFLHDPNTIRRIVAAAELEPTDRV 70 Query 61 LEVGPGLGSLTLALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALR 120 LEVGPG+GSLTL L++ VTAVEID LA++L TVAE + RL VV +D L + Sbjct 71 LEVGPGMGSLTLGLVEAVGDVTAVEIDSRLAAQLPDTVAERAPEYAQRLRVVEKDALRVT 130 Query 121 REDLAAAPTAVVANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGV 180 D+ PTA+VANLPYNVAVP LLHLL FPSIR V VMVQ EVA+RLAA+PGSK YGV Sbjct 131 DSDVTE-PTALVANLPYNVAVPVLLHLLETFPSIRRVLVMVQLEVADRLAAQPGSKVYGV 189 Query 181 PSVKLRFFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIA 240 PSVK F+G+V + G + VFWP P + SGLVRID +E +PWP D R +V+ ++D A Sbjct 190 PSVKAGFYGKVSKAGTIGKNVFWPAPNIESGLVRIDVFEDAPWPITDESRAKVWPVIDAA 249 Query 241 FAQRRKTSRNAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRL 288 FAQRRKT R A GSG+ + L AA IDP +RGE L+++DFVRL Sbjct 250 FAQRRKTLRAALSGHFGSGAAAEEALRAADIDPKQRGEKLAVEDFVRL 297 >gi|227542448|ref|ZP_03972497.1| dimethyladenosine transferase [Corynebacterium glucuronolyticum ATCC 51866] gi|227181646|gb|EEI62618.1| dimethyladenosine transferase [Corynebacterium glucuronolyticum ATCC 51866] Length=286 Score = 300 bits (767), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 161/282 (58%), Positives = 194/282 (69%), Gaps = 4/282 (1%) Query 12 RLLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVGPGLGSLT 71 RLLG EIR LA +LD P K LGQNF+HD NTVR +VAA+G+ D V+EVGPGLGSLT Sbjct 6 RLLGPAEIRALAAQLDIVPTKKLGQNFLHDPNTVRMIVAAAGLEPDDRVIEVGPGLGSLT 65 Query 72 LALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDLAAA-PTA 130 L L+ + VTAVEID LA +L +TVA+H+ RL+VVN D LA+ RE A PTA Sbjct 66 LGLVGEVSAVTAVEIDRRLAEQLPKTVADHAPGCAERLSVVNEDALAVTREAFGEAEPTA 125 Query 131 VVANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVKLRFFGR 190 +VANLPYNVAVP LLHLL PSIR V VMVQ EVA+RL+A PG+K YGVPSVK +FG Sbjct 126 IVANLPYNVAVPVLLHLLRTVPSIRRVLVMVQEEVADRLSASPGTKIYGVPSVKASYFGE 185 Query 191 VRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIAFAQRRKTSRN 250 V++ G V VFWP P V SGLVRID +E++PW +F LVD AFAQRRKT R Sbjct 186 VKKAGTVGKHVFWPAPNVSSGLVRIDCFESNPWGVSPEV---LFPLVDAAFAQRRKTLRA 242 Query 251 AFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRLLRRS 292 A + G + L AA IDP +RGE L +D+FVR+ + + Sbjct 243 ALGSFFGGADRAEAILTAAGIDPRQRGEKLGVDEFVRIAKEA 284 >gi|227487807|ref|ZP_03918123.1| dimethyladenosine transferase [Corynebacterium glucuronolyticum ATCC 51867] gi|227092309|gb|EEI27621.1| dimethyladenosine transferase [Corynebacterium glucuronolyticum ATCC 51867] Length=286 Score = 299 bits (766), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 161/282 (58%), Positives = 194/282 (69%), Gaps = 4/282 (1%) Query 12 RLLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVGPGLGSLT 71 RLLG EIR LA +LD P K LGQNF+HD NTVR +VAA+G+ D V+EVGPGLGSLT Sbjct 6 RLLGPAEIRALAAQLDIVPTKKLGQNFLHDPNTVRMIVAAAGLEPDDRVIEVGPGLGSLT 65 Query 72 LALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDLAAA-PTA 130 L L+ + VTAVEID LA +L +TVA+H+ RL+VVN D LA+ RE A PTA Sbjct 66 LGLVGEVSAVTAVEIDRRLAEQLPKTVADHAPGCAERLSVVNADALAVTREAFGEAEPTA 125 Query 131 VVANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVKLRFFGR 190 +VANLPYNVAVP LLHLL PSIR V VMVQ EVA+RL+A PG+K YGVPSVK +FG Sbjct 126 IVANLPYNVAVPVLLHLLRTVPSIRRVLVMVQEEVADRLSASPGTKIYGVPSVKASYFGE 185 Query 191 VRRCGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIAFAQRRKTSRN 250 V++ G V VFWP P V SGLVRID +E++PW +F LVD AFAQRRKT R Sbjct 186 VKKAGTVGKHVFWPAPNVSSGLVRIDCFESNPWGVSP---EALFPLVDAAFAQRRKTLRA 242 Query 251 AFVQWAGSGSESANRLLAASIDPARRGETLSIDDFVRLLRRS 292 A + G + L AA IDP +RGE L +D+FVR+ + + Sbjct 243 ALGSFFGGADRAEAILTAAGIDPRQRGEKLGVDEFVRIAKEA 284 >gi|319950588|ref|ZP_08024496.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Dietzia cinnamea P4] gi|319435727|gb|EFV90939.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [Dietzia cinnamea P4] Length=244 Score = 295 bits (755), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 155/244 (64%), Positives = 177/244 (73%), Gaps = 1/244 (0%) Query 19 IRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVGPGLGSLTLALLDRG 78 +R LA EL P K+LGQNFVHDANTVR++V ASGV R D V+EVGPGLGSLTL LLD Sbjct 1 MRALAAELGVTPTKTLGQNFVHDANTVRKIVTASGVGRDDTVIEVGPGLGSLTLPLLDAA 60 Query 79 ATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDLA-AAPTAVVANLPY 137 V AVEIDP+LA+RL +TVAE + LTVV D LA+ DL +PTA+VANLPY Sbjct 61 GRVVAVEIDPVLAARLPRTVAERAPRLAELLTVVGADALAVSAADLGEPSPTALVANLPY 120 Query 138 NVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVKLRFFGRVRRCGMV 197 NV+VP LLHLL E P+IR VMVQ EVA+RLAA PGS+ YGVPSVK FFG VRR G+V Sbjct 121 NVSVPVLLHLLAEVPTIRTALVMVQLEVADRLAAAPGSRVYGVPSVKAGFFGTVRRTGVV 180 Query 198 SPTVFWPIPRVYSGLVRIDRYETSPWPTDDAFRRRVFELVDIAFAQRRKTSRNAFVQWAG 257 VFWP+P V SGLVRID Y +PW RRRVF +VD AFAQRRKT R A WAG Sbjct 181 GRNVFWPVPNVESGLVRIDAYPEAPWDLGAEHRRRVFAVVDAAFAQRRKTLRAALSGWAG 240 Query 258 SGSE 261 SG++ Sbjct 241 SGAD 244 >gi|68536597|ref|YP_251302.1| dimethyladenosine transferase [Corynebacterium jeikeium K411] gi|119365018|sp|Q4JU23.1|RSMA_CORJK RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|68264196|emb|CAI37684.1| dimethyladenosine transferase [Corynebacterium jeikeium K411] Length=316 Score = 294 bits (753), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 162/302 (54%), Positives = 196/302 (65%), Gaps = 25/302 (8%) Query 11 IRLLGRTEIRRLAKELDFRPRKSLGQNFVHDANTVRRVVAASGVSRSDLVLEVGPGLGSL 70 IRLLG EIR+LA+ELD P K LGQNFVHD NTVR++V A+ V+ D V+E+GPGLGSL Sbjct 7 IRLLGPNEIRQLAEELDLNPTKKLGQNFVHDPNTVRKIVKAADVTADDNVVEIGPGLGSL 66 Query 71 TLALLDRGATVTAVEIDPLLASRLQQTVAEHSHSEVHRLTVVNRDVLALRREDLAAA--- 127 TLALL+ GA+VTAVEIDP LA++L T+ E +E + V+ +D + + +D A A Sbjct 67 TLALLEAGASVTAVEIDPRLAAKLPATLEEQGAAEAD-VAVILKDAMEVAVQDFADAGRP 125 Query 128 -PTAVVANLPYNVAVPALLHLLVEFPSIRVVTVMVQAEVAERLAAEPGSKEYGVPSVKLR 186 PTA+VANLPYNV+VP LLH+L EFPSI V VMVQ EVA+RLAA PGSK YGVPSVK Sbjct 126 LPTALVANLPYNVSVPVLLHMLEEFPSIDRVLVMVQLEVADRLAAAPGSKIYGVPSVKAG 185 Query 187 FFGRVRRCGMVSPTVFWPIPRVYSGLVRIDRYE--TSPWPTDDA---------------- 228 F+G V R + VFWP P++ SGLVRIDRY PW + Sbjct 186 FYGSVARAATIGKNVFWPAPKIDSGLVRIDRYAEGAEPWAGGQSGAEQFDADQGIEQLDA 245 Query 229 --FRRRVFELVDIAFAQRRKTSRNAFVQWAGSGSESANRLLAASIDPARRGETLSIDDFV 286 RR VF+L D AF QRRKT R A GSG + L +A IDP RGE LS + FV Sbjct 246 QKLRREVFDLADAAFLQRRKTLRAALSGHFGSGQAAEEALRSAGIDPTLRGEKLSTEQFV 305 Query 287 RL 288 +L Sbjct 306 QL 307 Lambda K H 0.321 0.134 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 552325845108 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40