BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1012

Length=97
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15608152|ref|NP_215528.1|  hypothetical protein Rv1012 [Mycoba...   198    2e-49
gi|289442433|ref|ZP_06432177.1|  conserved hypothetical protein [...   131    4e-29
gi|31792203|ref|NP_854696.1|  hypothetical protein Mb1040 [Mycoba...   130    5e-29
gi|289749541|ref|ZP_06508919.1|  LOW QUALITY PROTEIN: hypothetica...   130    7e-29
gi|319794967|ref|YP_004156607.1|  amino acid adenylation domain-c...  35.0    3.7  


>gi|15608152|ref|NP_215528.1| hypothetical protein Rv1012 [Mycobacterium tuberculosis H37Rv]
 gi|148660794|ref|YP_001282317.1| hypothetical protein MRA_1020A [Mycobacterium tuberculosis H37Ra]
 gi|167968130|ref|ZP_02550407.1| hypothetical protein MtubH3_08885 [Mycobacterium tuberculosis 
H37Ra]
 17 more sequence titles
 Length=97

 Score =  198 bits (504),  Expect = 2e-49, Method: Compositional matrix adjust.
 Identities = 97/97 (100%), Positives = 97/97 (100%), Gaps = 0/97 (0%)

Query  1   MPRAARGIRACRGRWVDRLAHQHASGRAAGIRPREVGGAHQSQAQKPYHDATEPLGESLR  60
           MPRAARGIRACRGRWVDRLAHQHASGRAAGIRPREVGGAHQSQAQKPYHDATEPLGESLR
Sbjct  1   MPRAARGIRACRGRWVDRLAHQHASGRAAGIRPREVGGAHQSQAQKPYHDATEPLGESLR  60

Query  61  YRPAHGDSCINGHRDNPSARESSQFTAGSTAKAVTKL  97
           YRPAHGDSCINGHRDNPSARESSQFTAGSTAKAVTKL
Sbjct  61  YRPAHGDSCINGHRDNPSARESSQFTAGSTAKAVTKL  97


>gi|289442433|ref|ZP_06432177.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289573652|ref|ZP_06453879.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289415352|gb|EFD12592.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289538083|gb|EFD42661.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
Length=75

 Score =  131 bits (329),  Expect = 4e-29, Method: Compositional matrix adjust.
 Identities = 62/63 (99%), Positives = 63/63 (100%), Gaps = 0/63 (0%)

Query  35  EVGGAHQSQAQKPYHDATEPLGESLRYRPAHGDSCINGHRDNPSARESSQFTAGSTAKAV  94
           EVGGAHQSQAQKPYHDATEPLGE+LRYRPAHGDSCINGHRDNPSARESSQFTAGSTAKAV
Sbjct  13  EVGGAHQSQAQKPYHDATEPLGENLRYRPAHGDSCINGHRDNPSARESSQFTAGSTAKAV  72

Query  95  TKL  97
           TKL
Sbjct  73  TKL  75


>gi|31792203|ref|NP_854696.1| hypothetical protein Mb1040 [Mycobacterium bovis AF2122/97]
 gi|121636941|ref|YP_977164.1| hypothetical protein BCG_1069 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|224989413|ref|YP_002644100.1| hypothetical protein JTY_1041 [Mycobacterium bovis BCG str. Tokyo 
172]
 8 more sequence titles
 Length=104

 Score =  130 bits (328),  Expect = 5e-29, Method: Compositional matrix adjust.
 Identities = 62/63 (99%), Positives = 63/63 (100%), Gaps = 0/63 (0%)

Query  35   EVGGAHQSQAQKPYHDATEPLGESLRYRPAHGDSCINGHRDNPSARESSQFTAGSTAKAV  94
            EVGGAHQSQAQKPYHDATEPLGE+LRYRPAHGDSCINGHRDNPSARESSQFTAGSTAKAV
Sbjct  42   EVGGAHQSQAQKPYHDATEPLGENLRYRPAHGDSCINGHRDNPSARESSQFTAGSTAKAV  101

Query  95   TKL  97
            TKL
Sbjct  102  TKL  104


>gi|289749541|ref|ZP_06508919.1| LOW QUALITY PROTEIN: hypothetical protein TBDG_01766 [Mycobacterium 
tuberculosis T92]
 gi|289690128|gb|EFD57557.1| LOW QUALITY PROTEIN: hypothetical protein TBDG_01766 [Mycobacterium 
tuberculosis T92]
Length=97

 Score =  130 bits (327),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 62/63 (99%), Positives = 63/63 (100%), Gaps = 0/63 (0%)

Query  35  EVGGAHQSQAQKPYHDATEPLGESLRYRPAHGDSCINGHRDNPSARESSQFTAGSTAKAV  94
           EVGGAHQSQAQKPYHDATEPLGE+LRYRPAHGDSCINGHRDNPSARESSQFTAGSTAKAV
Sbjct  35  EVGGAHQSQAQKPYHDATEPLGENLRYRPAHGDSCINGHRDNPSARESSQFTAGSTAKAV  94

Query  95  TKL  97
           TKL
Sbjct  95  TKL  97


>gi|319794967|ref|YP_004156607.1| amino acid adenylation domain-containing protein [Variovorax 
paradoxus EPS]
 gi|315597430|gb|ADU38496.1| amino acid adenylation domain protein [Variovorax paradoxus EPS]
Length=1766

 Score = 35.0 bits (79),  Expect = 3.7, Method: Compositional matrix adjust.
 Identities = 32/104 (31%), Positives = 49/104 (48%), Gaps = 20/104 (19%)

Query  1    MPRAARGI---RACRGRWVDRLAHQHA-SGRAAGIRPREVGGAHQSQAQKPYHDATEPLG  56
            MP+   G     ACR  W+DR A  +A   R A ++    GG+ ++QA+ P  D TE   
Sbjct  547  MPKTTSGKLQRNACRAGWLDRSADAYAIYERGAFVK----GGSVEAQAEAPVLDETEHAV  602

Query  57   ESL---RYRPAHGDSCINGHRDNPSARESSQFTAGSTAKAVTKL  97
            +++     RPA            P AR+S  FT G ++   T++
Sbjct  603  DAIWREVLRPADA---------KPFARDSHFFTRGGSSLTATQV  637



Lambda     K      H
   0.316    0.129    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 130655526400


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40